Changeset 9306 for branches/UKMO/dev_r5518_obs_oper_update/NEMOGCM/CONFIG/SHARED/namelist_ref

Timestamp:

2018-02-05T16:07:40+01:00 (6 years ago)

Author:

dford

Message:

Add extra biogeochemical variables to OBS code, and make profile obs operator code more generic. See internal Met Office NEMO ticket 733.

File:

• branches/UKMO/dev_r5518_obs_oper_update/NEMOGCM/CONFIG/SHARED/namelist_ref (modified) (2 diffs)

branches/UKMO/dev_r5518_obs_oper_update/NEMOGCM/CONFIG/SHARED/namelist_ref

@@ -1201 +1201 @@
    ln_vel3d   = .false.             ! Logical switch for velocity observations
    ln_sss     = .false.             ! Logical swithc for SSS observations
-   ln_logchl  = .false.             ! Logical switch for log(Chl) obs
-   ln_spm     = .false.             ! Logical switch for SPM obs
-   ln_fco2    = .false.             
-   ln_pco2    = .false.
+   ln_slchltot = .false.            ! Logical switch for surface total              log10(chlorophyll) obs
+   ln_slchldia = .false.            ! Logical switch for surface diatom             log10(chlorophyll) obs
+   ln_slchlnon = .false.            ! Logical switch for surface non-diatom         log10(chlorophyll) obs
+   ln_slchldin = .false.            ! Logical switch for surface dinoflagellate     log10(chlorophyll) obs
+   ln_slchlmic = .false.            ! Logical switch for surface microphytoplankton log10(chlorophyll) obs
+   ln_slchlnan = .false.            ! Logical switch for surface nanophytoplankton  log10(chlorophyll) obs
+   ln_slchlpic = .false.            ! Logical switch for surface picophytoplankton  log10(chlorophyll) obs
+   ln_schltot  = .false.            ! Logical switch for surface total              chlorophyll        obs
+   ln_slphytot = .false.            ! Logical switch for surface total      log10(phytoplankton carbon) obs
+   ln_slphydia = .false.            ! Logical switch for surface diatom     log10(phytoplankton carbon) obs
+   ln_slphynon = .false.            ! Logical switch for surface non-diatom log10(phytoplankton carbon) obs
+   ln_sspm     = .false.            ! Logical switch for surface suspended particulate matter obs
+   ln_sfco2    = .false.            ! Logical switch for surface fugacity         of carbon dioxide obs
+   ln_spco2    = .false.            ! Logical switch for surface partial pressure of carbon dioxide obs
+   ln_plchltot = .false.            ! Logical switch for profile total log10(chlorophyll) obs
+   ln_pchltot  = .false.            ! Logical switch for profile total chlorophyll obs
+   ln_pno3     = .false.            ! Logical switch for profile nitrate obs
+   ln_psi4     = .false.            ! Logical switch for profile silicate obs
+   ln_ppo4     = .false.            ! Logical switch for profile phosphate obs
+   ln_pdic     = .false.            ! Logical switch for profile dissolved inorganic carbon obs
+   ln_palk     = .false.            ! Logical switch for profile alkalinity obs
+   ln_pph      = .false.            ! Logical switch for profile pH obs
+   ln_po2      = .false.            ! Logical switch for profile dissolved oxygen obs
    ln_altbias = .false.             ! Logical switch for altimeter bias correction
    ln_sstbias = .false.             ! Logical switch for SST bias correction
@@ -1213 +1232 @@
    ln_s_at_t  = .false.             ! Logical switch for computing model S at T obs if not there
    ln_sstnight = .false.            ! Logical switch for calculating night-time average for SST obs
-   ln_sla_fp_indegs = .true.        ! Logical: T=> averaging footpring is in degrees, F=> in metres
+   ln_default_fp_indegs = .true.    ! Logical: T=> averaging footprint is in degrees, F=> in metres
+   ln_sla_fp_indegs = .true.        ! Logical: T=> averaging footprint is in degrees, F=> in metres
    ln_sst_fp_indegs = .true.
    ln_sss_fp_indegs = .true.
    ln_sic_fp_indegs = .true.
 ! All of the *files* variables below are arrays. Use namelist_cfg to add more files
-   cn_profbfiles = 'profiles_01.nc'    ! Profile feedback input observation file names
-   cn_slafbfiles = 'sla_01.nc'         ! SLA feedback input observation file names
-   cn_sstfbfiles = 'sst_01.nc'         ! SST feedback input observation file names
-   cn_sicfbfiles = 'sic_01.nc'         ! SIC feedback input observation file names
-   cn_velfbfiles = 'vel_01.nc'         ! Velocity feedback input observation file names
-   cn_sssfbfiles = 'sss_01.nc'         ! SSS feedback input observation file names
-   cn_altbiasfile = 'altbias.nc'       ! Altimeter bias input file name
-   cn_sstbiasfiles = 'sstbias.nc'      ! SST bias input file names
-   cn_gridsearchfile = 'gridsearch.nc' ! Grid search file name
-   rn_gridsearchres = 0.5              ! Grid search resolution
-   rn_sla_avglamscl = 0.               ! E/W diameter of SLA observation footprint (metres/degrees)
-   rn_sla_avgphiscl = 0.               ! N/S diameter of SLA observation footprint (metres/degrees)
-   rn_sst_avglamscl = 0.
-   rn_sst_avgphiscl = 0.
-   rn_sss_avglamscl = 0.
-   rn_sss_avgphiscl = 0.
-   rn_sic_avglamscl = 0.
-   rn_sic_avgphiscl = 0.
-   nn_1dint = 0                        ! Type of vertical interpolation method
-   nn_2dint = 0                        ! Default horizontal interpolation method
-   nn_2dint_sla = 0                    ! Horizontal interpolation method for SLA
-   nn_2dint_sst = 0                    ! Horizontal interpolation method for SST
-   nn_2dint_sss = 0                    ! Horizontal interpolation method for SSS
-   nn_2dint_sic = 0                    ! Horizontal interpolation method for SIC
-   nn_msshc = 0                        ! MSSH correction scheme
-   rn_mdtcorr = 1.61                   ! MDT  correction
-   rn_mdtcutoff = 65.0                 ! MDT cutoff for computed correction
-   nn_profdavtypes = -1                ! Profile daily average types - array
+   cn_profbfiles = 'profiles_01.nc'      ! Profile feedback input observation file names
+   cn_slafbfiles = 'sla_01.nc'           ! SLA feedback input observation file names
+   cn_sstfbfiles = 'sst_01.nc'           ! SST feedback input observation file names
+   cn_sicfbfiles = 'sic_01.nc'           ! SIC feedback input observation file names
+   cn_velfbfiles = 'vel_01.nc'           ! Velocity feedback input observation file names
+   cn_sssfbfiles = 'sss_01.nc'           ! SSS feedback input observation file names
+   cn_slchltotfbfiles = 'slchltot_01.nc' ! Surface total              log10(chlorophyll) obs file names
+   cn_slchldiafbfiles = 'slchldia_01.nc' ! Surface diatom             log10(chlorophyll) obs file names
+   cn_slchlnonfbfiles = 'slchlnon_01.nc' ! Surface non-diatom         log10(chlorophyll) obs file names
+   cn_slchldinfbfiles = 'slchldin_01.nc' ! Surface dinoflagellate     log10(chlorophyll) obs file names
+   cn_slchlmicfbfiles = 'slchlmic_01.nc' ! Surface microphytoplankton log10(chlorophyll) obs file names
+   cn_slchlnanfbfiles = 'slchlnan_01.nc' ! Surface nanophytoplankton  log10(chlorophyll) obs file names
+   cn_slchlpicfbfiles = 'slchlpic_01.nc' ! Surface picophytoplankton  log10(chlorophyll) obs file names
+   cn_schltotfbfiles  = 'schltot_01.nc'  ! Surface total              chlorophyll        obs file names
+   cn_slphytotfbfiles = 'slphytot_01.nc' ! Surface total      log10(phytoplankton carbon) obs file names
+   cn_slphydiafbfiles = 'slphydia_01.nc' ! Surface diatom     log10(phytoplankton carbon) obs file names
+   cn_slphynonfbfiles = 'slphynon_01.nc' ! Surface non-diatom log10(phytoplankton carbon) obs file names
+   cn_sspmfbfiles     = 'sspm_01.nc'     ! Surface suspended particulate matter obs file names
+   cn_sfco2fbfiles    = 'sfco2_01.nc'    ! Surface fugacity         of carbon dioxide obs file names
+   cn_spco2fbfiles    = 'spco2_01.nc'    ! Surface partial pressure of carbon dioxide obs file names
+   cn_plchltotfbfiles = 'plchltot_01.nc' ! Profile total log10(chlorophyll) obs file names
+   cn_pchltotfbfiles  = 'pchltot_01.nc'  ! Profile total chlorophyll obs file names
+   cn_pno3fbfiles     = 'pno3_01.nc'     ! Profile nitrate obs file names
+   cn_psi4fbfiles     = 'psi4_01.nc'     ! Profile silicate obs file names
+   cn_ppo4fbfiles     = 'ppo4_01.nc'     ! Profile phosphate obs file names
+   cn_pdicfbfiles     = 'pdic_01.nc'     ! Profile dissolved inorganic carbon obs file names
+   cn_palkfbfiles     = 'palk_01.nc'     ! Profile alkalinity obs file names
+   cn_pphfbfiles      = 'pph_01.nc'      ! Profile pH obs file names
+   cn_po2fbfiles      = 'po2_01.nc'      ! Profile dissolved oxygen obs file names
+   cn_altbiasfile = 'altbias.nc'         ! Altimeter bias input file name
+   cn_sstbiasfiles = 'sstbias.nc'        ! SST bias input file names
+   cn_gridsearchfile = 'gridsearch.nc'   ! Grid search file name
+   rn_gridsearchres = 0.5                ! Grid search resolution
+   rn_default_avglamscl = 0.             ! Default E/W diameter of observation footprint (metres/degrees)
+   rn_default_avgphiscl = 0.             ! Default N/S diameter of observation footprint (metres/degrees)
+   rn_sla_avglamscl = 0.                 ! E/W diameter of SLA observation footprint (metres/degrees)
+   rn_sla_avgphiscl = 0.                 ! N/S diameter of SLA observation footprint (metres/degrees)
+   rn_sst_avglamscl = 0.                 ! E/W diameter of SST observation footprint (metres/degrees)
+   rn_sst_avgphiscl = 0.                 ! N/S diameter of SST observation footprint (metres/degrees)
+   rn_sss_avglamscl = 0.                 ! E/W diameter of SSS observation footprint (metres/degrees)
+   rn_sss_avgphiscl = 0.                 ! N/S diameter of SSS observation footprint (metres/degrees)
+   rn_sic_avglamscl = 0.                 ! E/W diameter of SIC observation footprint (metres/degrees)
+   rn_sic_avgphiscl = 0.                 ! N/S diameter of SIC observation footprint (metres/degrees)
+   nn_1dint = 0                          ! Type of vertical interpolation method
+   nn_2dint_default = 0                  ! Default horizontal interpolation method
+   nn_2dint_sla = -1                     ! Horizontal interpolation method for SLA
+   nn_2dint_sst = -1                     ! Horizontal interpolation method for SST
+   nn_2dint_sss = -1                     ! Horizontal interpolation method for SSS
+   nn_2dint_sic = -1                     ! Horizontal interpolation method for SIC
+   nn_msshc = 0                          ! MSSH correction scheme
+   rn_mdtcorr = 1.61                     ! MDT  correction
+   rn_mdtcutoff = 65.0                   ! MDT cutoff for computed correction
+   nn_profdavtypes = -1                  ! Profile daily average types - array
    
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