Changeset 1121 for trunk/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_pisces
- Timestamp:
- 2008-06-20T17:23:23+02:00 (16 years ago)
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trunk/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_pisces
r1093 r1121 1 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 2 !! PISCES : 1 - air-sea exchange (nampisext) 3 !! namelists 2 - biological parameters (nampisbio) 4 !! 3 - parameters for nutrient limitations (nampislim) 5 !! 4 - parameters for phytoplankton (nampisprod,nampismort) 6 !! 5 - parameters for zooplankton (nampismes,nampiszoo) 7 !! 6 - parameters for remineralization (nampisrem) 8 !! 7 - parameters for calcite chemistry (nampiscal) 9 !! 8 - parameters for inputs deposition (nampissed) 10 !! 9 - parameters for Kriest parameterization (nampiskrp, nampiskrs) 11 !! 10 - additional 2D/3D diagnostics (nampisdia) 1 12 !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 2 ! General namelist for PISCES model 3 ! ------------- 4 !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 13 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 14 &nampisext ! air-sea exchange 15 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 16 atcco2 = 278. ! atmospheric pCO2 17 / 18 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 19 &nampisbio ! biological parameters 20 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 21 part = 0.85 ! part of calcite not dissolved in guts 22 nrdttrc = 4 ! time step frequency for biology 23 wsbio = 2. ! POC sinking speed 24 xkmort = 1.E-7 ! half saturation constant for mortality 25 ferat3 = 3.E-6 ! Fe/C in zooplankton 26 wsbio2 = 50. ! Big particles sinking speed 27 / 28 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 29 &nampislim ! parameters for nutrient limitations 30 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 31 conc0 = 2.e-6 ! Phosphate half saturation 32 conc1 = 10E-6 ! Phosphate half saturation for diatoms 33 conc2 = 0.02E-9 ! Iron half saturation for phyto 34 conc2m = 0.08E-9 ! Max iron half saturation for phyto 35 conc3 = 0.1E-9 ! Iron half saturation for diatoms 36 conc3m = 0.4E-9 ! Maxi iron half saturation for diatoms 37 concnnh4 = 1.E-7 ! NH4 half saturation for phyto 38 concdnh4 = 5.E-7 ! NH4 half saturation for diatoms 39 xksi1 = 2.E-6 ! half saturation constant for Si uptake 40 xksi2 = 3.33E-6 ! half saturation constant for Si/C 41 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 42 caco3r = 0.3 ! mean rain ratio 43 / 44 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 45 &nampisprod ! parameters for phytoplankton growth 46 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 47 pislope = 4. ! P-I slope 48 pislope2 = 4. ! P-I slope for diatoms 49 excret = 0.05 ! excretion ratio of phytoplankton 50 excret2 = 0.05 ! excretion ratio of diatoms 51 chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton 52 chlcdm = 0.05 ! Minimum Chl/C in diatoms 53 fecnm = 10E-6 ! Maximum Fe/C in nanophytoplankton 54 fecdm = 15E-6 ! Minimum Fe/C in diatoms 55 grosip = 0.151 ! mean Si/C ratio 56 / 57 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 58 &nampismort ! parameters for phytoplankton sinks 59 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 60 wchl = 0.001 ! quadratic mortality of phytoplankton 61 wchld = 0.02 ! maximum quadratic mortality of diatoms 62 mprat = 0.01 ! phytoplankton mortality rate 63 mprat2 = 0.01 ! Diatoms mortality rate 64 mpratm = 0.01 ! Phytoplankton minimum mortality rate 65 / 66 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 67 &nampismes ! parameters for mesozooplankton 68 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 69 grazrat2 = 0.7 ! maximal mesozoo grazing rate 70 resrat2 = 0.005 ! exsudation rate of mesozooplankton 71 mzrat2 = 0.03 ! mesozooplankton mortality rate 72 xprefc = 1. ! zoo preference for phyto 73 xprefp = 0.2 ! zoo preference for POC 74 xprefz = 1. ! zoo preference for zoo 75 xprefpoc = 0.2 ! zoo preference for poc 76 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 77 epsher2 = 0.33 ! Efficicency of Mesozoo growth 78 sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM 79 unass2 = 0.3 ! non assimilated fraction of P by mesozoo 80 grazflux = 5.e3 ! flux-feeding rate 81 / 82 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 83 &nampiszoo ! parameters for microzooplankton 84 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 85 grazrat = 4.0 ! maximal zoo grazing rate 86 resrat = 0.03 ! exsudation rate of zooplankton 87 mzrat = 0.0 ! zooplankton mortality rate 88 xpref2c = 0.0 ! Microzoo preference for POM 89 xpref2p = 0.5 ! Microzoo preference for Nanophyto 90 xpref2d = 0.5 ! Microzoo preference for Diatoms 91 xkgraz = 20.E-6 ! half sturation constant for grazing 92 epsher = 0.33 ! Efficiency of microzoo growth 93 sigma1 = 0.6 ! Fraction of microzoo excretion as DOM 94 unass = 0.3 ! non assimilated fraction of phyto by zoo 95 / 96 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 97 &nampisrem ! parameters for remineralization 98 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 99 xremik = 0.3 ! remineralization rate of DOC 100 xremip = 0.025 ! remineralisation rate of POC 101 nitrif = 0.05 ! NH4 nitrification rate 102 xsirem = 0.015 ! remineralization rate of Si 103 xlam1 = 0.005 ! scavenging rate of Iron 104 oxymin = 1.E-6 ! Half-saturation constant for anoxia 105 / 106 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 107 &nampiscal ! parameters for Calcite chemistry 108 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 109 kdca = 0.327e3 ! calcite dissolution rate constant (1/time) 110 nca = 1. ! order of dissolution reaction (dimensionless) 111 / 112 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 113 &nampissed ! parameters for inputs deposition 114 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 115 bdustfer = .true. ! boolean for dust input from the atmosphere 116 briver = .true. ! boolean for river input of nutrients 117 bndepo = .true. ! boolean for atmospheric deposition of N 118 bsedinput = .true. ! boolean for Fe input from sediments 119 sedfeinput = 1E-9 ! Coastal release of Iron 120 dustsolub = 0.014 ! Solubility of the dust 121 / 122 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 123 &nampiskrp ! Kriest parameterization : parameters "key_kriest" 124 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 125 xkr_eta = 1.17 ! Sinking exponent 126 xkr_zeta = 2.28 ! N content exponent 127 xkr_mass_min = 0.0002 ! Minimum mass for Aggregates 128 xkr_mass_max = 1. ! Maximum mass for Aggregates 129 / 130 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 131 &nampiskrs ! Kriest parameterization : size classes "key_kriest" 132 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 133 xkr_sfact = 942. ! Sinking factor 134 xkr_stick = 0.5 ! Stickiness 135 xkr_nnano = 2.337 ! Nbr of cell in nano size class 136 xkr_ndiat = 3.718 ! Nbr of cell in diatoms size class 137 xkr_nmeso = 7.147 ! Nbr of cell in mesozoo size class 138 xkr_naggr = 9.877 ! Nbr of cell in aggregates size class 139 / 140 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 141 &nampisdia ! additional 2D/3D tracers diagnostics ("key_trc_diaadd") 142 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 143 nwritedia = 6000 ! time step frequency for tracers diagnostics 5 144 ! 6 !----------------------------------------------------------------------- 7 ! natext air-sea exchange 8 !----------------------------------------------------------------------- 9 ! atcco2 : atmospheric pCO2 10 ! 11 &natext 12 atcco2 = 278., 145 ! ! name ! title of the field ! units ! 146 ! ! ! ! ! 147 pisdia2d(1) = 'Cflx ' , 'DIC flux ', 'molC/m2/s ' 148 pisdia2d(2) = 'Oflx ' , 'Oxygen flux ', 'molC/m2/s ' 149 pisdia2d(3) = 'Kg ' , 'Gas transfer ', 'mol/m2/s/uatm' 150 pisdia2d(4) = 'Delc ' , 'Delta CO2 ', 'uatm ' 151 pisdia2d(5) = 'PMO ' , 'POC export ', 'molC/m2/s ' 152 pisdia2d(6) = 'PMO2 ' , 'GOC export ', 'molC/m2/s ' 153 pisdia2d(7) = 'ExpFe1 ' , 'Nano iron export ', 'molFe/m2/s ' 154 pisdia2d(8) = 'ExpFe2 ' , 'Diatoms iron export ', 'molFe/m2/s ' 155 pisdia2d(9) = 'ExpSi ' , 'Silicate export ', 'molSi/m2/s ' 156 pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export ', 'molC/m2/s ' 157 pisdia2d(11) = 'heup ' , 'euphotic layer depth ', 'm ' 158 pisdia2d(12) = 'Fedep ' , 'Iron dep ', 'molFe/m2/s ' 159 pisdia2d(13) = 'Nfix ' , 'Nitrogen Fixation ', 'molN/m2/s ' 160 pisdia3d(1) = 'PH ' , 'PH ', '- ' 161 pisdia3d(2) = 'CO3 ' , 'Bicarbonates ', 'mol/l ' 162 pisdia3d(3) = 'CO3sat ' , 'CO3 saturation ', 'mol/l ' 163 pisdia3d(4) = 'PAR ' , 'light penetration ', 'W/m2 ' 164 pisdia3d(5) = 'PPPHY ' , 'Primary production of nanophyto ', 'molC/m3/s ' 165 pisdia3d(6) = 'PPPHY2 ' , 'Primary production of diatoms ', 'molC/m3/s ' 166 pisdia3d(7) = 'PPZOO ' , 'Primary production of microzoo ', 'molC/m3/s ' 167 pisdia3d(8) = 'PPZOO2 ' , 'Primary production of mesozoo ', 'molC/m3/s ' 168 pisdia3d(9) = 'PBSi ' , 'Primary production of Si diatoms ', 'molSi/m3/s ' 169 pisdia3d(10) = 'PFeN ' , 'Primary production of nano iron ', 'molFe/m3/s ' 170 pisdia3d(11) = 'PFeD ' , 'Primary production of diatoms iron', 'molFe/m3/s ' 13 171 / 14 !-----------------------------------------------------------------------15 ! natbio biological parameters16 !-----------------------------------------------------------------------17 ! part part of calcite not dissolved in guts18 ! nrdttrc time step frequency for biology19 ! wsbio POC sinking speed20 ! xkmort half saturation constant for mortality21 ! ferat3 Fe/C in zooplankton22 ! wsbio2 Big particles sinking speed23 !24 &natbio25 part = 0.85,26 nrdttrc = 4,27 wsbio = 2. ,28 xkmort = 1.E-7 ,29 ferat3 = 3.E-6,30 wsbio2 = 50.,31 /32 !-----------------------------------------------------------------------33 ! natlim parameters for nutrient limitations34 !-----------------------------------------------------------------------35 ! conc0 Phosphate half saturation36 ! conc1 Phosphate half saturation for diatoms37 ! conc2 Iron half saturation for phyto38 ! conc3 Iron half saturation for diatoms39 ! concnnh4 NH4 half saturation for phyto40 ! concdnh4 NH4 half saturation for diatoms41 ! xksi1 half saturation constant for Si uptake42 ! xksi2 half saturation constant for Si/C43 ! xkdoc half-saturation constant of DOC remineralization44 ! caco3r mean rain ratio45 &natlim46 conc0 = 2.e-6,47 conc1 = 10E-6 ,48 conc2 = 0.02E-9 ,49 conc2m = 0.08E-9,50 conc3 = 0.1E-9 ,51 conc3m = 0.4E-9,52 concnnh4 = 1.E-7,53 concdnh4 = 5.E-7,54 xksi1 = 2.E-6 ,55 xksi2 = 3.33E-6 ,56 xkdoc = 417.E-6 ,57 caco3r = 0.3,58 /59 !-----------------------------------------------------------------------60 ! natprod parameters for phytoplankton growth61 !-----------------------------------------------------------------------62 ! pislope P-I slope63 ! pislope2 P-I slope for diatoms64 ! excret excretion ratio of phytoplankton65 ! excret2 excretion ratio of diatoms66 ! chlcnm Minimum Chl/C in nanophytoplankton67 ! chlcdm Minimum Chl/C in diatoms68 ! fecnm Maximum Fe/C in nanophytoplankton69 ! fecdm Minimum Fe/C in diatoms70 ! grosip mean Si/C ratio71 &natprod72 pislope = 4. ,73 pislope2 = 4. ,74 excret = 0.05 ,75 excret2 = 0.05 ,76 chlcnm = 0.033,77 chlcdm = 0.05,78 fecnm = 10E-6,79 fecdm = 15E-6,80 grosip = 0.151,81 /82 !-----------------------------------------------------------------------83 ! natmort parameters for phytoplankton sinks84 !-----------------------------------------------------------------------85 ! wchl quadratic mortality of phytoplankton86 ! wchld maximum quadratic mortality of diatoms87 ! mprat phytoplankton mortality rate88 ! mprat2 Diatoms mortality rate89 ! mpratm Phytoplankton minimum mortality rate90 &natmort91 wchl = 0.001,92 wchld = 0.02,93 mprat = 0.01,94 mprat2 = 0.01,95 mpratm = 0.01,96 /97 !-----------------------------------------------------------------------98 ! natmes parameters for mesozooplankton99 !-----------------------------------------------------------------------100 ! grazrat2 maximal mesozoo grazing rate101 ! resrat2 exsudation rate of mesozooplankton102 ! mzrat2 mesozooplankton mortality rate103 ! xprefc zoo preference for phyto104 ! xprefp zoo preference for POC105 ! xprefz zoo preference for zoo106 ! xprefpoc zoo preference for poc107 ! xkgraz2 half sturation constant for meso grazing108 ! epsher2 Efficicency of Mesozoo growth109 ! sigma2 Fraction of mesozoo excretion as DOM110 ! unass2 non assimilated fraction of P by mesozoo111 ! grazflux flux-feeding rate112 &natmes113 grazrat2 = 0.7,114 resrat2 = 0.005,115 mzrat2 = 0.03,116 xprefc = 1. ,117 xprefp = 0.2 ,118 xprefz = 1 ,119 xprefpoc = 0.2 ,120 xkgraz2 = 20.E-6 ,121 epsher2 = 0.33 ,122 sigma2 = 0.6,123 unass2 = 0.3 ,124 grazflux = 5.e3,125 /126 !-----------------------------------------------------------------------127 ! natbio biological parameters128 !-----------------------------------------------------------------------129 ! grazrat maximal zoo grazing rate130 ! resrat exsudation rate of zooplankton131 ! mzrat zooplankton mortality rate132 ! xpref2c Microzoo preference for POM133 ! xpref2p Microzoo preference for Nanophyto134 ! xpref2d Microzoo preference for Diatoms135 ! xkgraz half sturation constant for grazing136 ! epsher Efficiency of microzoo growth137 ! sigma1 Fraction of microzoo excretion as DOM138 ! unass non assimilated fraction of phyto by zoo139 &natzoo140 grazrat = 4.0,141 resrat = 0.03,142 mzrat = 0.0,143 xpref2c = 0.0 ,144 xpref2p = 0.5 ,145 xpref2d = 0.5 ,146 xkgraz = 20.E-6 ,147 epsher = 0.33 ,148 sigma1 = 0.6,149 unass = 0.3 ,150 /151 !152 !-----------------------------------------------------------------------153 ! natrem parameters for remineralization154 !-----------------------------------------------------------------------155 ! xremik remineralization rate of DOC156 ! xremip remineralisation rate of POC157 ! nitrif NH4 nitrification rate158 ! xsirem remineralization rate of Si159 ! xlam1 scavenging rate of Iron160 ! oxymin Half-saturation constant for anoxia161 &natrem162 xremik = 0.3,163 xremip = 0.025,164 nitrif = 0.05,165 xsirem = 0.015,166 xlam1 = 0.005,167 oxymin = 1.E-6,168 /169 !-----------------------------------------------------------------------170 ! natcal Calcite chemistry171 !-----------------------------------------------------------------------172 ! kdca calcite dissolution rate constant (1/time)173 ! nca order of dissolution reaction (dimensionless)174 &natcal175 kdca = 0.327e3,176 nca = 1.,177 /178 !-----------------------------------------------------------------------179 ! natsms inputs deposition180 !-----------------------------------------------------------------------181 ! bdustfer boolean for dust input from the atmosphere182 ! briver boolean for river input of nutrients183 ! bndepo boolean for atmospheric deposition of N184 ! bsedinput boolean for Fe input from sediments185 ! sedfeinput Coastal release of Iron186 !187 &natsms188 bdustfer = .true.,189 briver = .false.,190 bndepo = .false.,191 bsedinput = .false.,192 sedfeinput = 1E-9,193 dustsolub = 0.014,194 /195 !---------------------------------------------------------------------------------196 ! natkrpar parameter for Kriest parameterization (#ifdef key_kriest)197 !---------------------------------------------------------------------------------198 ! xkr_eta Sinking exponent199 ! xkr_zeta N content exponent200 ! xkr_mass_min Minimum mass for Aggregates201 ! xkr_mass_max Maximum mass for Aggregates202 !203 &natkrpar204 xkr_eta = 1.17,205 xkr_zeta = 2.28,206 xkr_mass_min = 0.0002,207 xkr_mass_max = 1.,208 /209 !---------------------------------------------------------------------------------210 ! natkrsize size calsses for Kriest parameterization (#ifdef key_kriest)211 !---------------------------------------------------------------------------------212 ! xkr_sfact Sinking factor213 ! xkr_stick Stickiness214 ! xkr_xnnano Nbr of cell in nano size class215 ! xkr_ndiat Nbr of cell in diatoms size class216 ! xkr_nmeso Nbr of cell in mesozoo size class217 ! xkr_naggr Nbr of cell in aggregates size class218 !219 &natkrsize220 xkr_sfact = 942.,221 xkr_stick = 0.5,222 xkr_nnano = 2.337,223 xkr_ndiat = 3.718,224 xkr_nmeso = 7.147,225 xkr_naggr = 9.877,226 /
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