Version 5 (modified by techene, 3 years ago) (diff) |
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Make sure proper libs are at proper places
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Note that in the provided environment XIOS and softwares from INSTALL should be already compiled.
HOME |-- XIOS |-- INSTALL |-- NEMO |-- arch |-- arch-MY_ENV.fcm |-- arch-linux_gfortran.fcm |-- ... |-- tests |-- CANAL |-- ... |-- cfgs |-- ORCA2_ICE_PISCES |-- ...
arch-MY_ENV.fcm
In arch-MY_ENV.fcm you must specify where is what, you must also specify compilers and compilers option :
%NCDF_HOME $HOME/INSTALL %HDF5_HOME $HOME/INSTALL %XIOS_HOME $HOME/XIOS ... %CPP cpp -Dkey_nosignedzero %FC /usr/bin/mpif90 -c -cpp %FCFLAGS -fdefault-real-8 -O3 -funroll-all-loops -fcray-pointer -ffree-line-length-none %FFLAGS %FCFLAGS %LD /usr/bin/mpif90 -Wl,-rpath=$HOME/INSTALL/lib:/usr/lib ...
Get NEMO code for users
# root cd HOME # my login me=techene # get last trunk revision svn co forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/release/r4.0/r4.0.5 NEMO # let's go ! cd NEMO
Get NEMO code for developers
# root cd HOME # my login me=techene # get last trunk revision svn co svn+ssh://${ME}@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk NEMO # let's go ! cd NEMO
Compile NEMO
generic example : ./makenemo -n MY_CONFIG -j 6 -m MY_ENV
- Replace -n MY_CONFIG by names you find in NEMO/tests prefixed with -a or NEMO/cfgs prefixed with -r.
- Replace MY_ENV by linux_gfortran or by any name you chose when you created your arch file.
# check you are in HOME you want to go to HOME/NEMO pwd # Let's go ! cd NEMO # generic example : ./makenemo -n MY_CONFIG -j 6 -m MY_ENV ./makenemo -h # compile ORCA2 configuration in the pre-set environment ./makenemo -r ORCA2_ICE_PISCES -j 6 -m linux_gfortran # compile CANAL configuration in the pre-set environment ./makenemo -a CANAL -j 6 -m linux_gfortran
Resulting executable is created in a repository associated with the MY_CONFIG configuration. In the generic example case it is ./*/MY_CONFIG/EXP00/. * stands either for tests or cfgs depending on where your configuration was originally located.
Run NEMO's ORCA2 configuration
# check you are in HOME/NEMO you want to go to HOME/NEMO/cfgs/ORCA2_ICE_PISCES/EXP00 pwd # Let's go ! cd ./cfgs/ORCA2_ICE_PISCES/EXP00 # Check executable presence ls -lrt # Run NEMO on 4 nodes (default) mpirun ./nemo -np 4 # Run NEMO with customize parameters vi namelist_cfg mpirun ./nemo -np 4
What happens ? namelist_cfg is the parameter file that is where you change values and input files in order to customize your run.
- change the model time step
- change the file frequency
Run NEMO's CANAL configuration
# check you are in HOME/NEMO you want to go to HOME/NEMO/tests/CANAL/EXP00 pwd # Let's go ! cd ./tests/CANAL/EXP00 # Check executable presence ls -lrt # Run NEMO on 4 nodes (default) mpirun ./nemo -np 4 # Run NEMO with customize parameters vi namelist_cfg mpirun ./nemo -np 4
What happens ? NEMO's sources (files.F90) are in src and in ./tests/CANAL/MY_SRC here we may want to change them in order to implement new features such as boundary condition shape. In that case we have to compile NEMO each time we change a source file.
- change the model time step
- change the file frequency
Attachments (2)
- namelist_cfg_pac2_trunk (36.4 KB) - added by techene 3 years ago.
- namelist_cfg_pac2_r4.0.5 (34.1 KB) - added by techene 3 years ago.
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