Changeset 3744 for branches/2012/dev_MERGE_2012
- Timestamp:
- 2013-01-12T13:59:49+01:00 (12 years ago)
- Location:
- branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/GYRE_BFM
- Files:
-
- 12 deleted
- 3 edited
Legend:
- Unmodified
- Added
- Removed
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branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/GYRE_BFM/EXP00/namelist
r3399 r3744 25 25 !----------------------------------------------------------------------- 26 26 nn_no = 0 ! job number 27 cn_exp = "GYRE"! experience name27 cn_exp = "GYRE_BFM"! experience name 28 28 nn_it000 = 1 ! first time step 29 nn_itend = 12! last time step29 nn_itend = 4320 ! last time step 30 30 nn_date0 = 010101 ! initial calendar date yymmdd (used if nn_rstctl=1) 31 31 nn_leapy = 30 ! Leap year calendar (1) or not (0) … … 38 38 nn_istate = 0 ! output the initial state (1) or not (0) 39 39 nn_stock = 4320 ! frequency of creation of a restart file (modulo referenced to 1) 40 nn_write = 12! frequency of write in the output file (modulo referenced to nn_it000)40 nn_write = 120 ! frequency of write in the output file (modulo referenced to nn_it000) 41 41 ln_dimgnnn = .false. ! DIMG file format: 1 file for all processors (F) or by processor (T) 42 42 ln_mskland = .false. ! mask land points in NetCDF outputs (costly: + ~15%) … … 252 252 ln_qsr_rgb = .false. ! RGB (Red-Green-Blue) light penetration 253 253 ln_qsr_2bd = .true. ! 2 bands light penetration 254 ln_qsr_bio = . false. ! bio-model light penetration254 ln_qsr_bio = .true. ! bio-model light penetration 255 255 nn_chldta = 0 ! RGB : Chl data (=1) or cst value (=0) 256 256 rn_abs = 0.58 ! RGB & 2 bands: fraction of light (rn_si1) -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/GYRE_BFM/EXP00/namelist_top
r3718 r3744 11 11 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 12 12 nn_dttrc = 1 ! time step frequency for passive sn_tracers 13 nn_writetrc = 360! time step frequency for sn_tracer outputs14 ln_top_euler = .true. ! use Euler timestepping at first step (T) or not (F)13 nn_writetrc = 0 ! time step frequency for sn_tracer outputs 14 ln_top_euler = .true. ! use Euler timestepping for TOP 15 15 ln_rsttr = .false. ! start from a restart file (T) or not (F) 16 16 nn_rsttr = 0 ! restart control = 0 initial time step is not compared to the restart file value … … 67 67 68 68 !----------------------------------------------------------------------- 69 &namtrc_dta 69 &namtrc_dta ! initial conditions 70 70 !----------------------------------------------------------------------- 71 ! ! file name ! frequency (hr) ! variable ! time interp. ! clim !'yearly' or ! weights ! rotation72 ! ! ! (if <0 mon) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing73 sn_trcdta(1) = 'data_O2_nomask' , -1 , 'O2' , .true. , .true. , 'yearly' , '' , ''74 sn_trcdta(2) = 'data_PO4_nomask' , -1 , 'PO4' , .true. , .true. , 'yearly' , '' , ''75 sn_trcdta(3) = 'data_NO3_nomask' , -1 , 'NO3' , .true. , .true. , 'yearly' , '' , ''76 sn_trcdta(6) = 'data_Si_nomask' , -1 , 'Si' , .true. , .true. , 'yearly' , '' , ''77 sn_trcdta(43) = 'data_DOC_nomask' , -12 , 'DOC' , .false. , .true. , 'yearly' , '' , ''78 sn_trcdta(49) = 'data_DIC_nomask' , -12 , 'DIC' , .false. , .true. , 'yearly' , '' , ''79 sn_trcdta(50) = 'data_Alkalini_nomask' , -12 , 'Alkalini', .false. , .true. , 'yearly' , '' , ''80 !81 cn_dir = './' ! root directory for the location of the input files82 71 / 83 72 84 73 !----------------------------------------------------------------------- 85 &namtrc_bc 74 &namtrc_bc ! boundary conditions 86 75 !----------------------------------------------------------------------- 87 ! ! file name ! frequency (hr) ! variable ! time interp. ! clim !'yearly' or ! weights ! rotation88 ! ! ! (if <0 mon) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing89 sn_trcsbc(3) = 'ndeposition.orca.nc' , -12 , '' , .true. , .true. , 'yearly' , '' , ''90 !91 cn_dir = './' ! root directory for the location of the boundary condition files92 76 / 77 93 78 !----------------------------------------------------------------------- 94 79 &namtrc_trd ! diagnostics on tracer trends ('key_trdtrc') … … 96 81 !---------------------------------------------------------------------- 97 82 / 83 98 84 !----------------------------------------------------------------------- 99 85 &namtrc_dia ! parameters for passive tracer additional diagnostics -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/GYRE_BFM/README
r3399 r3744 1 To compile with the BFM: 2 export BFMDIR=path/to/bfm 3 cd .. 4 ./makenemo -n GYRE_BFM -m ARCHFILE -e $BFMDIR/src/nemo -j 8 1 ----------------------------------------------------------------------- 2 Coupling with the Biogeochemical Flux Model (BFM) 3 ----------------------------------------------------------------------- 4 Author: M. Vichi, BFM system team and NEMO system team 5 INFO HELPDESK: info@bfm-community.eu 6 WEB SITE: www.bfm-community.eu 7 REVISION DATE: January 2013 8 9 Please address any technical query to the BFM System Team 10 bfm_st@lists.cmcc.it 11 ----------------------------------------------------------------------- 12 13 ----------------------------------------------------------------------- 14 What is the BFM? 15 ----------------------------------------------------------------------- 16 The Biogeochemical Flux Model (BFM) is a numerical model for the 17 simulation of the dynamics of major biogeochemical properties 18 in marine ecosystems. The BFM is open source software freely available 19 under the GNU Public License. The model can be used in standalone mode 20 to simulate a 0-D system or coupled with other OGCM. 21 The coupling with NEMO is maintained by CMCC as part of the 22 NEMO system team activity 23 24 ----------------------------------------------------------------------- 25 How to get the BFM code 26 ----------------------------------------------------------------------- 27 The code can be downloaded from http://www.bfm-community.eu after 28 the registration of a new user. Follow the instructions on how to 29 install the code. It is recommended to run the STANDALONE test cases 30 before using the NEMO-BFM coupled system. 31 32 ----------------------------------------------------------------------- 33 Compile NEMO with the BFM 34 ----------------------------------------------------------------------- 35 Make sure that the BFMDIR variable is defined in your environment 36 (ex: export BFMDIR=path/to/bfm) 37 Define the variable NEMODIR pointing to the root of NEMO source code 38 (ex: export NEMODIR=path/to/nemo) 39 40 Go to the $BFMDIR/build directory and modify the script 41 config_GYRE_BFM.sh 42 adding the appropriate ARCHFILE that is used for the NEMO compilation. 43 The script will generate the BFM code and then launch makenemo 44 to build the executable in this directory. 45 46 Once the BFM code has been generated the first time, the code can be 47 rebuilt with the following command: 48 ./makenemo -n GYRE_BFM -m ARCHFILE -e $BFMDIR/src/nemo 49 50 ----------------------------------------------------------------------- 51 Standard test case 52 ----------------------------------------------------------------------- 53 The distributed standard test case is GYRE_BFM, a version of GYRE 54 with a full-blown BFM. It is a demnstration simulation and it is not 55 meant to produce any published result. The namelistsfor the BFM are 56 not distributed with NEMO but are found in the BFM tree, in 57 directory $BFMDIR/run/nemo/GYRE_BFM. The user can either copy the content 58 of $NEMODIR/NEMOGCM/CONFIG/GYRE_BFM/EXP00 in this directory or the 59 other way around. GYRE_BFM runs with analytical input data only. 60 61 ----------------------------------------------------------------------- 62 Other examples 63 ----------------------------------------------------------------------- 64 Other couplings with NEMO are available in $BFMDIR/run/nemo/. 65 Please refer to the README file in each directory for more information.
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