Changeset 14385 for NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs
- Timestamp:
- 2021-02-03T16:03:34+01:00 (3 years ago)
- Location:
- NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED
- Files:
-
- 1 added
- 2 edited
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field_def_nemo-pisces.xml (modified) (1 diff)
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namelist_pisces_ref (modified) (13 diffs)
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namelist_sediment_ref (added)
Legend:
- Unmodified
- Added
- Removed
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NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/field_def_nemo-pisces.xml
r14209 r14385 136 136 <field id="SedpH" long_name="PH" unit="1" /> 137 137 <field id="SedCO3por" long_name="Bicarbonates" unit="mol/m3" /> 138 <field id="Sedligand" long_name="Ligands" unit="mol/m3" /> 139 <field id="SaturCO3" long_name="CO3 Saturation" unit="-" /> 138 140 </field_group> 139 141 140 142 <!-- SEDIMENT additional variables on T sediment grid --> 141 143 <field_group id="Diag_S" grid_ref="grid_T_2D"> 142 <field id="FlxSi" long_name="Si sediment flux" unit="mol/cm2/s" /> 143 <field id="FlxO2" long_name="O2 sediment flux" unit="mol/cm2/s" /> 144 <field id="FlxDIC" long_name="DIC sediment flux" unit="mol/cm2/s" /> 145 <field id="FlxNO3" long_name="NO3 sediment flux" unit="mol/cm2/s" /> 146 <field id="FlxPO4" long_name="PO4 sediment flux" unit="mol/cm2/s" /> 147 <field id="FlxAlkalini" long_name="Alkalinity sediment flux" unit="mol/cm2/s" /> 148 <field id="FlxNH4" long_name="Ammonium sediment flux" unit="mol/cm2/s" /> 149 <field id="FlxH2S" long_name="H2S sediment flux" unit="mol/cm2/s" /> 150 <field id="FlxSO4" long_name="SO4 sediment flux" unit="mol/cm2/s" /> 151 <field id="FlxFe2" long_name="Fe2+ sediment flux" unit="mol/cm2/s" /> 152 <field id="Flxtot" long_name="Sediment net burial rate" unit="cm/s" /> 153 <field id="dzdep" long_name="Sedimentation rate" unit="cm/s" /> 154 <field id="sflxclay" long_name="Clay sedimentation rate" unit="g/m2/s" /> 155 <field id="sflxcal" long_name="Calcite sedimentation rate" unit="mol/m2/s" /> 156 <field id="sflxbsi" long_name="BSi Sedimentation rate" unit="mol/m2/s" /> 157 <field id="sflxpoc" long_name="POC Sedimentation rate" unit="mol/m2/s" /> 158 <field id="sflxfeo" long_name="Fe(OH)3 Sedimentation rate" unit="mol/m2/s" /> 144 <field id="FlxSi" long_name="Si sediment flux" unit="mol/cm2/s" /> 145 <field id="FlxO2" long_name="O2 sediment flux" unit="mol/cm2/s" /> 146 <field id="FlxDIC" long_name="DIC sediment flux" unit="mol/cm2/s" /> 147 <field id="FlxNO3" long_name="NO3 sediment flux" unit="mol/cm2/s" /> 148 <field id="FlxPO4" long_name="PO4 sediment flux" unit="mol/cm2/s" /> 149 <field id="FlxAlkalini" long_name="Alkalinity sediment flux" unit="mol/cm2/s" /> 150 <field id="FlxNH4" long_name="Ammonium sediment flux" unit="mol/cm2/s" /> 151 <field id="FlxH2S" long_name="H2S sediment flux" unit="mol/cm2/s" /> 152 <field id="FlxSO4" long_name="SO4 sediment flux" unit="mol/cm2/s" /> 153 <field id="FlxFe2" long_name="Fe2+ sediment flux" unit="mol/cm2/s" /> 154 <field id="dzdep" long_name="Sedimentation rate" unit="cm/s" /> 155 <field id="sflxclay" long_name="Clay sedimentation rate" unit="g/cm2/s" /> 156 <field id="sflxbsi" long_name="BSi sedimentation rate" unit="g/cm2/s" /> 157 <field id="sflxpoc" long_name="POC sedimentation rate" unit="g/cm2/s" /> 158 <field id="sflxcal" long_name="Calcite sedimentation rate" unit="g/cm2/s" /> 159 <field id="FlxClay" long_name="Clay burial rate" unit="g/cm2/s" /> 160 <field id="FlxCaCO3" long_name="Calcite burial rate" unit="g/cm2/s" /> 161 <field id="FlxBSi" long_name="BSi burial rate" unit="g/cm2/s" /> 162 <field id="FlxPOC" long_name="POC burial rate" unit="g/cm2/s" /> 163 <field id="FlxFeO" long_name="Fe(OH)3 burial rate" unit="g/cm2/s" /> 164 <field id="FlxFeS" long_name="FeS burial rate" unit="g/cm2/s" /> 165 <field id="FlxPOR" long_name="POR burial rate" unit="g/cm2/s" /> 166 <field id="FlxPOS" long_name="POS burial rate" unit="g/cm2/s" /> 167 <field id="Flxtot" long_name="total burial flux" unit="g/cm2/s" /> 159 168 </field_group> 160 169 -
NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/namelist_pisces_ref
r12845 r14385 14 14 !----------------------------------------------------------------------- 15 15 ln_p2z = .false. ! LOBSTER model used 16 ln_p4z = . true.! PISCES model used17 ln_p5z = . false.! PISCES QUOTA model used16 ln_p4z = .false. ! PISCES model used 17 ln_p5z = .true. ! PISCES QUOTA model used 18 18 ln_ligand = .false. ! Enable organic ligands 19 19 ln_sediment = .false. ! Enable sediment module … … 34 34 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! 35 35 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! 36 sn_patm = 'presatm' , -1 37 sn_atmco2 = 'presatmco2' , -1 36 sn_patm = 'presatm' , -1. , 'patm' , .true. , .true. , 'yearly' , '' , '' , '' 37 sn_atmco2 = 'presatmco2' , -1. , 'xco2' , .true. , .true. , 'yearly' , '' , '' , '' 38 38 cn_dir = './' ! root directory for the location of the dynamical files 39 39 ! … … 44 44 &nampisbio ! biological parameters 45 45 !----------------------------------------------------------------------- 46 nrdttrc = 1 ! time step frequency for biology 47 wsbio = 2. ! POC sinking speed 48 xkmort = 2.E-7 ! half saturation constant for mortality 49 ferat3 = 10.E-6 ! Fe/C in zooplankton 50 wsbio2 = 50. ! Big particles sinking speed 51 wsbio2max = 50. ! Big particles maximum sinking speed 52 wsbio2scale = 5000. ! Big particles length scale of sinking 46 nrdttrc = 1 ! time step frequency for biology 47 wsbio = 2. ! POC sinking speed 48 xkmort = 2.E-7 ! half saturation constant for mortality 49 feratz = 10.E-6 ! Fe/C in zooplankton 50 feratm = 15.E-6 ! Fe/C in mesozooplankton 51 wsbio2 = 50. ! Big particles sinking speed 52 wsbio2max = 50. ! Big particles maximum sinking speed 53 wsbio2scale = 5000. ! Big particles length scale of sinking 53 54 ! ! ln_ligand enabled 54 ldocp = 1.E-4! Phyto ligand production per unit doc55 ldocz = 1.E-4! Zoo ligand production per unit doc56 lthet = 1.0! Proportional loss of ligands due to Fe uptake55 ldocp = 1.E-4 ! Phyto ligand production per unit doc 56 ldocz = 1.E-4 ! Zoo ligand production per unit doc 57 lthet = 1.0 ! Proportional loss of ligands due to Fe uptake 57 58 ! ! ln_p5z enabled 58 no3rat3 = 0.182! N/C ratio in zooplankton59 po4rat3 = 0.0094! P/C ratio in zooplankton59 no3rat3 = 0.151 ! N/C ratio in zooplankton 60 po4rat3 = 0.00944 ! P/C ratio in zooplankton 60 61 / 61 62 !----------------------------------------------------------------------- … … 64 65 concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton 65 66 concdno3 = 3.E-6 ! Nitrate half saturation for diatoms 66 concnnh4 = 1.E- 7! NH4 half saturation for phyto67 concdnh4 = 3.E- 7! NH4 half saturation for diatoms68 concnfer = 1.E-9 ! Iron half saturation for phyto69 concdfer = 3.E-9 ! Iron half saturation for diatoms70 concbfe = 1.E-11 ! Iron half-saturation for DOC remin.71 concbnh4 = 2.E-8! NH4 half saturation for DOC remin.72 concbno3 = 2.E-7 ! Nitrate half saturation for DOC remin.67 concnnh4 = 1.E-6 ! NH4 half saturation for phyto 68 concdnh4 = 3.E-6 ! NH4 half saturation for diatoms 69 concnfer = 3.E-9 ! Iron half saturation for phyto 70 concdfer = 9.E-9 ! Iron half saturation for diatoms 71 concbfe = 3.E-11 ! Iron half-saturation for DOC remin. 72 concbnh4 = 3.E-7 ! NH4 half saturation for DOC remin. 73 concbno3 = 3.E-7 ! Nitrate half saturation for DOC remin. 73 74 xsizedia = 1.E-6 ! Minimum size criteria for diatoms 74 75 xsizephy = 1.E-6 ! Minimum size criteria for phyto 75 76 xsizern = 3.0 ! Size ratio for nanophytoplankton 76 xsizerd = 3.0 ! Size ratio for diatoms77 xksi1 = 2.E-6 ! half saturation constant for Si uptake77 xsizerd = 4.0 ! Size ratio for diatoms 78 xksi1 = 8.E-6 ! half saturation constant for Si uptake 78 79 xksi2 = 20E-6 ! half saturation constant for Si/C 79 80 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 80 qnfelim = 7.E-6! Optimal quota of phyto81 qdfelim = 7.E-6! Optimal quota of diatoms82 caco3r = 0. 3! mean rain ratio81 qnfelim = 10.E-6 ! Optimal quota of phyto 82 qdfelim = 10.E-6 ! Optimal quota of diatoms 83 caco3r = 0.28 ! mean rain ratio 83 84 oxymin = 1.E-6 ! Half-saturation constant for anoxia 84 85 / … … 86 87 &namp5zlim ! parameters for nutrient limitations PISCES QUOTA - ln_p5z 87 88 !----------------------------------------------------------------------- 88 concnno3 = 3e-6 ! Nitrate half saturation of nanophytoplankton89 concpno3 = 1e-690 concdno3 = 4E-6 ! Phosphate half saturation for diatoms91 concnnh4 = 1.5E-6! NH4 half saturation for phyto92 concpnh4 = 4E-793 concdnh4 = 2E-6 ! NH4 half saturation for diatoms94 concnpo4 = 3E-6 ! PO4 half saturation for phyto95 concppo4 = 1.5E-696 concdpo4 = 4E-6 ! PO4 half saturation for diatoms97 concnfer = 3E-9! Iron half saturation for phyto98 concpfer = 1.5E-999 concdfer = 4E-9! Iron half saturation for diatoms100 concbfe = 1.E-11! Half-saturation for Fe limitation of Bacteria101 concbnh4 = 1.E-7 ! NH4 half saturation for phyto102 concbno3 = 5.E-7 ! Phosphate half saturation for diatoms103 concbpo4 = 1E-7! Phosphate half saturation for bacteria89 concnno3 = 2e-6 ! Nitrate half saturation of nanophytoplankton 90 concpno3 = 7e-7 ! Nitrate half saturation of picophytoplankton 91 concdno3 = 3E-6 ! Phosphate half saturation for diatoms 92 concnnh4 = 2E-6 ! NH4 half saturation for phyto 93 concpnh4 = 7E-7 ! NH4 half saturation for picophytoplankton 94 concdnh4 = 3E-6 ! NH4 half saturation for diatoms 95 concnpo4 = 2E-6 ! PO4 half saturation for phyto 96 concppo4 = 7E-7 ! PO4 half saturation for picophytoplankton 97 concdpo4 = 3E-6 ! PO4 half saturation for diatoms 98 concnfer = 6E-9 ! Iron half saturation for phyto 99 concpfer = 2E-9 ! Iron half saturation for picophytoplankton 100 concdfer = 9E-9 ! Iron half saturation for diatoms 101 concbfe = 3E-11 ! Half-saturation for Fe limitation of Bacteria 102 concbnh4 = 4.E-7 ! NH4 half saturation for phyto 103 concbno3 = 4.E-7 ! Phosphate half saturation for diatoms 104 concbpo4 = 4.E-7 ! Phosphate half saturation for bacteria 104 105 xsizedia = 1.E-6 ! Minimum size criteria for diatoms 105 106 xsizephy = 1.E-6 ! Minimum size criteria for phyto 106 xsizepic = 1.E-6107 xsizern = 1.0 ! Size ratio for nanophytoplankton108 xsizerp = 1.0107 xsizepic = 5.E-7 ! Minimum size criteria for picophyto 108 xsizern = 3.0 ! Size ratio for nanophytoplankton 109 xsizerp = 2.0 ! Size ratio for picophytoplankton 109 110 xsizerd = 4.0 ! Size ratio for diatoms 110 xksi1 = 2.E-6 ! half saturation constant for Si uptake111 xksi2 = 20E-6 ! half saturation constant for Si/C111 xksi1 = 8.E-6 ! half saturation constant for Si uptake 112 xksi2 = 20E-6 ! half saturation constant for Si/C 112 113 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 113 caco3r = 0. 35! mean rain ratio114 caco3r = 0.5 ! mean rain ratio 114 115 oxymin = 1.E-6 ! Half-saturation constant for anoxia 115 116 / … … 117 118 &namp5zquota ! parameters for nutrient limitations PISCES quota - ln_p5z 118 119 !----------------------------------------------------------------------- 119 qfnopt = 7.E-6! Optimal Fe quota of nanophyto120 qfpopt = 7.E-6! Optimal Fe quota of picophyto121 qfdopt = 7.E-6! Optimal quota of diatoms122 qnnmin = 0. 29! Minimal N quota for nano123 qnnmax = 1. 39! Maximal N quota for nano124 qpnmin = 0.2 8! Minimal P quota for nano125 qpnmax = 1. 06! Maximal P quota for nano126 qnpmin = 0.42 ! Minimal N quota for pico120 qfnopt = 10.E-6 ! Optimal Fe quota of nanophyto 121 qfpopt = 10.E-6 ! Optimal Fe quota of picophyto 122 qfdopt = 10.E-6 ! Optimal quota of diatoms 123 qnnmin = 0.61 ! Minimal N quota for nano 124 qnnmax = 1.25 ! Maximal N quota for nano 125 qpnmin = 0.24 ! Minimal P quota for nano 126 qpnmax = 1.35 ! Maximal P quota for nano 127 qnpmin = 1.02 ! Minimal N quota for pico 127 128 qnpmax = 1.39 ! Maximal N quota for pico 128 qppmin = 0. 25! Minimal P quota for pico129 qppmax = 0.7! Maximal P quota for pico130 qndmin = 0. 25! Minimal N quota for diatoms131 qndmax = 1. 39! Maximal N quota for diatoms132 qpdmin = 0.2 9! Minimal P quota for diatoms133 qpdmax = 1. 32! Maximal P quota for diatoms134 qfnmax = 40E-6 ! Maximal Fe quota for nano135 qfpmax = 40E-6 ! Maximal Fe quota for pico136 qfdmax = 40E-6 ! Maximal Fe quota for diatoms129 qppmin = 0.19 ! Minimal P quota for pico 130 qppmax = 1.15 ! Maximal P quota for pico 131 qndmin = 0.51 ! Minimal N quota for diatoms 132 qndmax = 1.25 ! Maximal N quota for diatoms 133 qpdmin = 0.24 ! Minimal P quota for diatoms 134 qpdmax = 1.525 ! Maximal P quota for diatoms 135 qfnmax = 60E-6 ! Maximal Fe quota for nano 136 qfpmax = 60E-6 ! Maximal Fe quota for pico 137 qfdmax = 60E-6 ! Maximal Fe quota for diatoms 137 138 / 138 139 !----------------------------------------------------------------------- … … 141 142 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! 142 143 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! 143 sn_par = 'par.orca' , 24 144 sn_par = 'par.orca' , 24. , 'fr_par' , .true. , .true. , 'yearly' , '' , '' , '' 144 145 cn_dir = './' ! root directory for the location of the dynamical files 145 146 ln_varpar = .true. ! boolean for PAR variable … … 149 150 &namp4zprod ! parameters for phytoplankton growth for PISCES std - ln_p4z 150 151 !----------------------------------------------------------------------- 151 pislopen = 2. 152 pisloped = 2. 152 pislopen = 2.5 ! P-I slope 153 pisloped = 2.5 ! P-I slope for diatoms 153 154 xadap = 0. ! Adaptation factor to low light 154 155 excretn = 0.05 ! excretion ratio of phytoplankton … … 157 158 chlcnm = 0.033 ! Maximum Chl/C in nanophytoplankton 158 159 chlcdm = 0.05 ! Maximum Chl/C in diatoms 159 chlcmin = 0.00 4! Minimum Chl/c in phytoplankton160 fecnm = 40E-6 ! Maximum Fe/C in nanophytoplankton161 fecdm = 40E-6 ! Maximum Fe/C in diatoms162 grosip = 0.1 59! mean Si/C ratio160 chlcmin = 0.003 ! Minimum Chl/c in phytoplankton 161 fecnm = 60E-6 ! Maximum Fe/C in nanophytoplankton 162 fecdm = 60E-6 ! Maximum Fe/C in diatoms 163 grosip = 0.13 ! mean Si/C ratio 163 164 / 164 165 !----------------------------------------------------------------------- 165 166 &namp5zprod ! parameters for phytoplankton growth for PISCES quota- ln_p5z 166 167 !----------------------------------------------------------------------- 167 pislopen = 3. ! P-I slope168 pislopep = 3.! P-I slope for picophytoplankton169 pisloped = 3.! P-I slope for diatoms168 pislopen = 5 ! P-I slope of nanophytoplankton 169 pislopep = 5 ! P-I slope for picophytoplankton 170 pisloped = 5 ! P-I slope for diatoms 170 171 excretn = 0.05 ! excretion ratio of phytoplankton 171 172 excretp = 0.05 ! excretion ratio of picophytoplankton … … 173 174 xadap = 0. ! Adaptation factor to low light 174 175 bresp = 0.02 ! Basal respiration rate 175 thetannm = 0. 25! Maximum Chl/N in nanophytoplankton176 thetanpm = 0. 25! Maximum Chl/N in picophytoplankton177 thetandm = 0. 3! Maximum Chl/N in diatoms178 chlcmin = 0.00 4! Minimum Chl/c in phytoplankton179 grosip = 0.1 31! mean Si/C ratio176 thetannm = 0.3 ! Maximum Chl/N in nanophytoplankton 177 thetanpm = 0.3 ! Maximum Chl/N in picophytoplankton 178 thetandm = 0.4 ! Maximum Chl/N in diatoms 179 chlcmin = 0.003 ! Minimum Chl/c in phytoplankton 180 grosip = 0.12 ! mean Si/C ratio 180 181 / 181 182 !----------------------------------------------------------------------- 182 183 &namp4zmort ! parameters for phytoplankton sinks for PISCES std - ln_p4z 183 184 !----------------------------------------------------------------------- 184 wchl = 0.01 ! quadratic mortality of phytoplankton 185 wchld = 0.01 ! maximum quadratic mortality of diatoms 186 wchldm = 0.03 ! maximum quadratic mortality of diatoms 187 mprat = 0.01 ! phytoplankton mortality rate 188 mprat2 = 0.01 ! Diatoms mortality rate 185 wchln = 0.01 ! quadratic mortality of phytoplankton 186 wchld = 0.03 ! maximum quadratic mortality of diatoms 187 mpratn = 0.01 ! phytoplankton mortality rate 188 mpratd = 0.01 ! Diatoms mortality rate 189 189 / 190 190 !----------------------------------------------------------------------- … … 193 193 wchln = 0.01 ! quadratic mortality of nanophytoplankton 194 194 wchlp = 0.01 ! quadratic mortality of picophytoplankton 195 wchld = 0.01 ! maximum quadratic mortality of diatoms 196 wchldm = 0.02 ! maximum quadratic mortality of diatoms 195 wchld = 0.03 ! maximum quadratic mortality of diatoms 197 196 mpratn = 0.01 ! nanophytoplankton mortality rate 198 197 mpratp = 0.01 ! picophytoplankton mortality rate 199 mprat 2= 0.01 ! Diatoms mortality rate198 mpratd = 0.01 ! Diatoms mortality rate 200 199 / 201 200 !----------------------------------------------------------------------- 202 201 &namp4zmes ! parameters for mesozooplankton for PISCES std - ln_p4z 203 202 !----------------------------------------------------------------------- 204 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 205 grazrat2 = 0.75 ! maximal mesozoo grazing rate 206 resrat2 = 0.005 ! exsudation rate of mesozooplankton 207 mzrat2 = 0.03 ! mesozooplankton mortality rate 208 xpref2d = 1. ! mesozoo preference for diatoms 209 xpref2n = 0.3 ! mesozoo preference for nanophyto. 210 xpref2z = 1. ! mesozoo preference for microzoo. 211 xpref2c = 0.3 ! mesozoo preference for poc 212 xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton 213 xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton 214 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton 215 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton 216 xthresh2 = 3E-7 ! Food threshold for grazing 217 xkgraz2 = 20.E-6 ! half saturation constant for meso grazing 218 epsher2 = 0.35 ! Efficicency of Mesozoo growth 219 epsher2min = 0.35 ! Minimum efficiency of mesozoo growth 220 sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM 221 unass2 = 0.3 ! non assimilated fraction of P by mesozoo 222 grazflux = 3.e3 ! flux-feeding rate 203 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 204 grazrat2 = 0.5 ! maximal mesozoo grazing rate 205 resrat2 = 0.005 ! exsudation rate of mesozooplankton 206 mzrat2 = 0.01 ! mesozooplankton mortality rate 207 xpref2d = 1. ! mesozoo preference for diatoms 208 xpref2n = 0.3 ! mesozoo preference for nanophyto. 209 xpref2z = 1. ! mesozoo preference for microzoo. 210 xpref2c = 0.3 ! mesozoo preference for poc 211 xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton 212 xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton 213 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton 214 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton 215 xthresh2 = 3E-7 ! Food threshold for grazing 216 xkgraz2 = 20.E-6 ! half saturation constant for meso grazing 217 epsher2 = 0.4 ! Efficicency of Mesozoo growth 218 epsher2min = 0.4 ! Minimum efficiency of mesozoo growth 219 sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM 220 unass2 = 0.3 ! non assimilated fraction of P by mesozoo 221 grazflux = 2.e3 ! flux-feeding rate 222 xsigma2 = 0.5 ! Predation window size 223 xsigma2del = 1.0 ! Predation window size scaling 224 ln_dvm_meso = .false. ! Activates DVM for mesozooplankton 225 xfracmig = 0.3 ! Fraction of mesozooplankton performing DVM 223 226 / 224 227 !----------------------------------------------------------------------- 225 228 &namp5zmes ! parameters for mesozooplankton 226 229 !----------------------------------------------------------------------- 227 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts228 grazrat2 = 0.85! maximal mesozoo grazing rate229 bmetexc2 = .true. ! Metabolic use of excess carbon230 resrat2 = 0.005 ! exsudation rate of mesozooplankton231 mzrat2 = 0.02! mesozooplankton mortality rate232 xpref2d = 1. ! zoo preference for phyto233 xpref2 p = 1. ! zoo preference for POC234 xpref2z = 1. ! zoo preference for zoo235 xpref2m = 0.2! meso preference for zoo236 xpref2c = 0.3 ! zoo preference for poc237 xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton238 xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton239 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton240 xthresh2mes = 1E-8 ! meso feeding threshold for mesozooplankton241 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton230 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 231 grazrat2 = 0.5 ! maximal mesozoo grazing rate 232 bmetexc2 = .true. ! Metabolic use of excess carbon 233 resrat2 = 0.005 ! exsudation rate of mesozooplankton 234 mzrat2 = 0.01 ! mesozooplankton mortality rate 235 xpref2d = 1. ! meso preference for diatoms 236 xpref2n = 0.3 ! meso preference for nano 237 xpref2z = 1. ! meso preference for zoo 238 xpref2m = 0. ! meso preference for zoo 239 xpref2c = 0.3 ! meso preference for poc 240 xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton 241 xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton 242 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton 243 xthresh2mes = 1E-8 ! meso feeding threshold for mesozooplankton 244 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton 242 245 xthresh2 = 3E-7 ! Food threshold for grazing 243 246 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 244 247 epsher2 = 0.5 ! Efficicency of Mesozoo growth 245 epsher2min = 0.2 ! Minimum efficiency of mesozoo growth 246 ssigma2 = 0.5 ! Fraction excreted as semi-labile DOM 247 srespir2 = 0.2 ! Active respiration 248 unass2c = 0.3 ! non assimilated fraction of P by mesozoo 249 unass2n = 0.3 ! non assimilated fraction of N by mesozoo 250 unass2p = 0.3 ! non assimilated fraction of P by mesozoo 251 grazflux = 3.e3 ! flux-feeding rate 248 epsher2min = 0.5 ! Minimum efficiency of mesozoo growth 249 ssigma2 = 0.5 ! Fraction excreted as semi-labile DOM 250 srespir2 = 0.2 ! Active respiration 251 unass2c = 0.3 ! non assimilated fraction of C by mesozoo 252 unass2n = 0.3 ! non assimilated fraction of N by mesozoo 253 unass2p = 0.3 ! non assimilated fraction of P by mesozoo 254 xsigma2 = 0.5 ! Predation window size 255 xsigma2del = 1.0 ! Predation window size scaling 256 grazflux = 2.e3 ! flux-feeding rate 257 ln_dvm_meso = .false. ! Activates DVM for mesozooplankton 258 xfracmig = 0.25 ! Fraction of mesozooplankton performing DVM 252 259 / 253 260 !----------------------------------------------------------------------- 254 261 &namp4zzoo ! parameters for microzooplankton for PISCES std - ln_p4z 255 262 !----------------------------------------------------------------------- 256 part = 0. 5! part of calcite not dissolved in microzoo guts257 grazrat = 3.0 ! maximal zoo grazing rate258 resrat = 0.0 3 ! exsudationrate of zooplankton259 mzrat = 0.00 4! zooplankton mortality rate263 part = 0.75 ! part of calcite not dissolved in microzoo guts 264 grazrat = 2.0 ! maximal zoo grazing rate 265 resrat = 0.02 ! Linear mortality rate of zooplankton 266 mzrat = 0.005 ! zooplankton mortality rate 260 267 xprefc = 0.1 ! Microzoo preference for POM 261 268 xprefn = 1. ! Microzoo preference for Nanophyto 262 xprefd = 0. 6! Microzoo preference for Diatoms269 xprefd = 0.8 ! Microzoo preference for Diatoms 263 270 xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton 264 271 xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton … … 266 273 xthresh = 3.E-7 ! Food threshold for feeding 267 274 xkgraz = 20.E-6 ! half sturation constant for grazing 268 epsher = 0. 3! Efficiency of microzoo growth269 epshermin = 0. 3! Minimum efficiency of microzoo growth275 epsher = 0.4 ! Efficiency of microzoo growth 276 epshermin = 0.4 ! Minimum efficiency of microzoo growth 270 277 sigma1 = 0.6 ! Fraction of microzoo excretion as DOM 271 278 unass = 0.3 ! non assimilated fraction of phyto by zoo 279 xsigma = 0.5 ! Predation window size 280 xsigmadel = 1.0 ! Predation window size scaling 272 281 / 273 282 !----------------------------------------------------------------------- 274 283 &namp5zzoo ! parameters for microzooplankton 275 284 !----------------------------------------------------------------------- 276 part = 0. 5! part of calcite not dissolved in microzoo gutsa277 grazrat = 2. 75! maximal zoo grazing rate285 part = 0.75 ! part of calcite not dissolved in microzoo gutsa 286 grazrat = 2.0 ! maximal zoo grazing rate 278 287 bmetexc = .true. ! Metabolic use of excess carbon 279 resrat = 0.0 3! exsudation rate of zooplankton288 resrat = 0.02 ! exsudation rate of zooplankton 280 289 mzrat = 0.005 ! zooplankton mortality rate 281 290 xprefc = 0.1 ! Microzoo preference for POM 282 xprefn = 1. 283 xprefp = 1. 6! Microzoo preference for picophyto284 xprefd = 1.0! Microzoo preference for Diatoms285 xprefz = 0. 3! Microzoo preference for microzooplankton291 xprefn = 1.0 ! Microzoo preference for Nanophyto 292 xprefp = 1.0 ! Microzoo preference for picophyto 293 xprefd = 0.8 ! Microzoo preference for Diatoms 294 xprefz = 0. ! Microzoo preference for microzooplankton 286 295 xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton 287 296 xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton 288 xthreshpic = 1.E-8 289 xthreshzoo = 1.E-8 ! Nanophyto feeding threshold for microzooplankton297 xthreshpic = 1.E-8 ! Picophyto feeding threshold for microzooplankton 298 xthreshzoo = 1.E-8 ! Microzoo feeding threshold for microzooplankton 290 299 xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton 291 300 xthresh = 3.E-7 ! Food threshold for feeding 292 xkgraz = 20.E-6 ! half s turation constant for grazing301 xkgraz = 20.E-6 ! half saturation constant for grazing 293 302 epsher = 0.5 ! Efficiency of microzoo growth 294 epshermin = 0. 2! Minimum efficiency of microzoo growth303 epshermin = 0.5 ! Minimum efficiency of microzoo growth 295 304 ssigma = 0.5 ! Fraction excreted as semi-labile DOM 296 305 srespir = 0.2 ! Active respiration 297 306 unassc = 0.3 ! non assimilated fraction of C by zoo 298 unassn = 0.3 ! non assimilated fraction of C by zoo 299 unassp = 0.3 ! non assimilated fraction of C by zoo 307 unassn = 0.3 ! non assimilated fraction of N by zoo 308 unassp = 0.3 ! non assimilated fraction of P by zoo 309 xsigma = 0.5 ! Predation window size 310 xsigmadel = 1.0 ! Predation window size scaling 300 311 / 301 312 !----------------------------------------------------------------------- 302 313 &nampisfer ! parameters for iron chemistry 303 314 !----------------------------------------------------------------------- 304 ln_ligvar = .false. 305 xlam1 = 0.0 05 ! scavenging rate of Iron306 xlamdust = 150.0 ! Scavenging rate of dust307 ligand = 0.7E-9! Ligands concentration315 ln_ligvar = .false. ! variable ligand concentration 316 xlam1 = 0.05 ! scavenging rate of Iron by biogenic particles 317 xlamdust = 150.0 ! Scavenging rate of Iron by dust 318 ligand = 1E-9 ! Ligands concentration 308 319 kfep = 0.01 ! Nanoparticle formation rate constant 320 scaveff = 1.0 ! Fraction of scavenged Fe that goes to POFe 309 321 / 310 322 !----------------------------------------------------------------------- 311 323 &nampisrem ! parameters for remineralization 312 324 !----------------------------------------------------------------------- 313 xremik = 0.3 ! remineralization rate of DOC314 325 nitrif = 0.05 ! NH4 nitrification rate 315 326 xsirem = 0.003 ! remineralization rate of Si 316 327 xsiremlab = 0.03 ! fast remineralization rate of Si 317 328 xsilab = 0.5 ! Fraction of labile biogenic silica 318 feratb = 10.E-6 ! Fe/C quota in bacteria329 feratb = 30.E-6 ! Fe/C quota in bacteria 319 330 xkferb = 3E-10 ! Half-saturation constant for bacteria Fe/C 320 331 ! ! ln_p5z 321 xremikc = 0.25 ! remineralization rate of DOC 322 xremikn = 0.35 ! remineralization rate of DON 323 xremikp = 0.4 ! remineralization rate of DOP 324 ! feratb = 20E-6 ! Bacterial Fe/C ratio 325 ! xkferb = 3E-10 ! Half-saturation constant for bact. Fe/C 332 xremikc = 0.4 ! remineralization rate of DOC 333 xremikn = 0.4 ! remineralization rate of DON 334 xremikp = 0.5 ! remineralization rate of DOP 326 335 / 327 336 !----------------------------------------------------------------------- 328 337 &nampispoc ! parameters for organic particles 329 338 !----------------------------------------------------------------------- 330 xremip = 0.035 ! remineralisation rate of PO N339 xremip = 0.035 ! remineralisation rate of POC 331 340 jcpoc = 15 ! Number of lability classes 332 341 rshape = 1.0 ! Shape of the gamma function 333 342 ! ! ln_p5z 334 xremipc = 0.02 335 xremipn = 0.0 25! remineralisation rate of PON336 xremipp = 0.03 343 xremipc = 0.028 ! remineralisation rate of POC 344 xremipn = 0.03 ! remineralisation rate of PON 345 xremipp = 0.035 ! remineralisation rate of POP 337 346 / 338 347 !----------------------------------------------------------------------- 339 348 &nampiscal ! parameters for Calcite chemistry 340 349 !----------------------------------------------------------------------- 341 kdca = 6. ! calcite dissolution rate constant (1/time)342 nca = 1. ! order of dissolution reaction (dimensionless)350 kdca = 3. ! calcite dissolution rate constant (1/time) 351 nca = 2. ! order of dissolution reaction (dimensionless) 343 352 / 344 353 !----------------------------------------------------------------------- … … 358 367 distcoast = 5.e3 ! Distance off the coast for Iron from sediments 359 368 mfrac = 0.035 ! Fe mineral fraction of dust 360 wdust = 2.0 ! Dust sinking speed 369 wdust = 2.0 ! Dust sinking speed 361 370 icefeinput = 15.e-9 ! Iron concentration in sea ice 362 hratio = 1.e+7 ! Fe to 3He ratio assumed for vent iron supply 371 hratio = 1.e+7 ! Fe to 3He ratio assumed for vent iron supply 363 372 ! ! ln_ligand 364 lgw_rath = 0.5 ! Weak ligand ratio from sed hydro sources 365 / 366 !----------------------------------------------------------------------- 367 &nampissed ! parameters for sediments mobilization 368 !----------------------------------------------------------------------- 369 nitrfix = 1.e-7 ! Nitrogen fixation rate 370 diazolight = 50. ! Diazotrophs sensitivity to light (W/m2) 371 concfediaz = 1.e-10 ! Diazotrophs half-saturation Cste for Iron 373 lgw_rath = 0.5 ! Weak ligand ratio from sed hydro sources 372 374 / 373 375 !----------------------------------------------------------------------- 374 376 &nampislig ! Namelist parameters for ligands, nampislig 375 377 !----------------------------------------------------------------------- 376 rlgw = 100. ! Lifetime (years) of weak ligands378 rlgw = 200. ! Lifetime (years) of weak ligands 377 379 rlig = 1.E-4 ! Remin ligand production per unit C 378 prlgw = 1.E-4 ! Photolysis of weak ligand380 prlgw = 5.E-4 ! Photolysis of weak ligand 379 381 rlgs = 1. ! Lifetime (years) of strong ligands 382 xklig = 1.E-9 ! 1/2 saturation constant of photolysis 380 383 / 381 384 !-----------------------------------------------------------------------
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