[268] | 1 | MODULE trcrst |
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[335] | 2 | !!====================================================================== |
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[1801] | 3 | !! *** MODULE trcrst *** |
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| 4 | !! TOP : Manage the passive tracer restart |
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[335] | 5 | !!====================================================================== |
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[1801] | 6 | !! History : - ! 1991-03 () original code |
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| 7 | !! 1.0 ! 2005-03 (O. Aumont, A. El Moussaoui) F90 |
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| 8 | !! - ! 2005-10 (C. Ethe) print control |
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| 9 | !! 2.0 ! 2005-10 (C. Ethe, G. Madec) revised architecture |
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[274] | 10 | !!---------------------------------------------------------------------- |
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[945] | 11 | #if defined key_top |
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[335] | 12 | !!---------------------------------------------------------------------- |
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[945] | 13 | !! 'key_top' TOP models |
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| 14 | !!---------------------------------------------------------------------- |
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[1801] | 15 | !!---------------------------------------------------------------------- |
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| 16 | !! trc_rst : Restart for passive tracer |
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| 17 | !!---------------------------------------------------------------------- |
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| 18 | !!---------------------------------------------------------------------- |
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| 19 | !! 'key_top' TOP models |
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| 20 | !!---------------------------------------------------------------------- |
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[945] | 21 | !! trc_rst_opn : open restart file |
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| 22 | !! trc_rst_read : read restart file |
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| 23 | !! trc_rst_wri : write restart file |
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| 24 | !!---------------------------------------------------------------------- |
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[335] | 25 | USE oce_trc |
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| 26 | USE trc |
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[2528] | 27 | USE trcnam_trp |
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[616] | 28 | USE iom |
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[6028] | 29 | USE ioipsl, ONLY : ju2ymds ! for calendar |
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[2528] | 30 | USE daymod |
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[5726] | 31 | !! AXY (05/11/13): need these for MEDUSA to input/output benthic reservoirs |
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| 32 | USE sms_medusa |
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| 33 | USE trcsms_medusa |
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| 34 | !! |
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[6213] | 35 | #if defined key_idtra |
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| 36 | USE trcsms_idtra |
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| 37 | #endif |
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| 38 | !! |
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| 39 | #if defined key_cfc |
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| 40 | USE trcsms_cfc |
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| 41 | #endif |
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[335] | 42 | IMPLICIT NONE |
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| 43 | PRIVATE |
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[1801] | 44 | |
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[945] | 45 | PUBLIC trc_rst_opn ! called by ??? |
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| 46 | PUBLIC trc_rst_read ! called by ??? |
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| 47 | PUBLIC trc_rst_wri ! called by ??? |
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[3294] | 48 | PUBLIC trc_rst_cal |
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[1801] | 49 | |
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[350] | 50 | !! * Substitutions |
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[945] | 51 | # include "top_substitute.h90" |
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[335] | 52 | |
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[268] | 53 | CONTAINS |
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[335] | 54 | |
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[616] | 55 | SUBROUTINE trc_rst_opn( kt ) |
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| 56 | !!---------------------------------------------------------------------- |
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| 57 | !! *** trc_rst_opn *** |
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| 58 | !! |
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| 59 | !! ** purpose : output of sea-trc variable in a netcdf file |
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| 60 | !!---------------------------------------------------------------------- |
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| 61 | INTEGER, INTENT(in) :: kt ! number of iteration |
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[6029] | 62 | INTEGER :: iyear, imonth, iday |
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| 63 | REAL (wp) :: zsec |
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[616] | 64 | ! |
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| 65 | CHARACTER(LEN=20) :: clkt ! ocean time-step define as a character |
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| 66 | CHARACTER(LEN=50) :: clname ! trc output restart file name |
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[5341] | 67 | CHARACTER(LEN=256) :: clpath ! full path to ocean output restart file |
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[616] | 68 | !!---------------------------------------------------------------------- |
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| 69 | ! |
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[2528] | 70 | IF( lk_offline ) THEN |
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[3294] | 71 | IF( kt == nittrc000 ) THEN |
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[2528] | 72 | lrst_trc = .FALSE. |
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[5341] | 73 | IF( ln_rst_list ) THEN |
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| 74 | nrst_lst = 1 |
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| 75 | nitrst = nstocklist( nrst_lst ) |
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| 76 | ELSE |
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| 77 | nitrst = nitend |
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| 78 | ENDIF |
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[2528] | 79 | ENDIF |
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| 80 | |
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[5341] | 81 | IF( .NOT. ln_rst_list .AND. MOD( kt - 1, nstock ) == 0 ) THEN |
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[3294] | 82 | ! we use kt - 1 and not kt - nittrc000 to keep the same periodicity from the beginning of the experiment |
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[2528] | 83 | nitrst = kt + nstock - 1 ! define the next value of nitrst for restart writing |
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| 84 | IF( nitrst > nitend ) nitrst = nitend ! make sure we write a restart at the end of the run |
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| 85 | ENDIF |
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| 86 | ELSE |
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[3294] | 87 | IF( kt == nittrc000 ) lrst_trc = .FALSE. |
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[1655] | 88 | ENDIF |
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| 89 | |
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[2528] | 90 | ! to get better performances with NetCDF format: |
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| 91 | ! we open and define the tracer restart file one tracer time step before writing the data (-> at nitrst - 2*nn_dttrc + 1) |
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| 92 | ! except if we write tracer restart files every tracer time step or if a tracer restart file was writen at nitend - 2*nn_dttrc + 1 |
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[3294] | 93 | IF( kt == nitrst - 2*nn_dttrc .OR. nstock == nn_dttrc .OR. ( kt == nitend - nn_dttrc .AND. .NOT. lrst_trc ) ) THEN |
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[6173] | 94 | IF ( ln_rstdate ) THEN |
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[6201] | 95 | !! JPALM -- 22-12-2015 -- modif to get the good date on restart trc file name |
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| 96 | !! -- the condition to open the rst file is not the same than for the dynamic rst. |
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| 97 | !! -- here it - for an obscure reason - is open 2 time-step before the restart writing process |
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[6173] | 98 | !! instead of 1. |
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[6201] | 99 | !! -- i am not sure if someone forgot +1 in the if loop condition as |
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| 100 | !! it is writen in all comments nitrst -2*nn_dttrc + 1 and the condition is |
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| 101 | !! nitrst - 2*nn_dttrc |
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| 102 | !! -- nevertheless we didn't wanted to broke something already working |
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[6173] | 103 | !! and just adapted the part we added. |
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[6201] | 104 | !! -- So instead of calling ju2ymds( fjulday + (rdttra(1)) |
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| 105 | !! we call ju2ymds( fjulday + (2*rdttra(1)) |
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[6173] | 106 | !!-------------------------------------------------------------------- |
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[6174] | 107 | CALL ju2ymds( fjulday + (2*rdttra(1)) / rday, iyear, imonth, iday, zsec ) |
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[6173] | 108 | WRITE(clkt, '(i4.4,2i2.2)') iyear, imonth, iday |
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| 109 | ELSE |
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[6028] | 110 | ! beware of the format used to write kt (default is i8.8, that should be large enough) |
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| 111 | IF( nitrst > 1.0e9 ) THEN ; WRITE(clkt,* ) nitrst |
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| 112 | ELSE ; WRITE(clkt,'(i8.8)') nitrst |
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| 113 | ENDIF |
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[6173] | 114 | ENDIF |
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[616] | 115 | ! create the file |
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| 116 | IF(lwp) WRITE(numout,*) |
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[1254] | 117 | clname = TRIM(cexper)//"_"//TRIM(ADJUSTL(clkt))//"_"//TRIM(cn_trcrst_out) |
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[5341] | 118 | clpath = TRIM(cn_trcrst_outdir) |
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| 119 | IF( clpath(LEN_TRIM(clpath):) /= '/' ) clpath = TRIM(clpath) // '/' |
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| 120 | IF(lwp) WRITE(numout,*) & |
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| 121 | ' open trc restart.output NetCDF file: ',TRIM(clpath)//clname |
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| 122 | CALL iom_open( TRIM(clpath)//TRIM(clname), numrtw, ldwrt = .TRUE., kiolib = jprstlib ) |
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[616] | 123 | lrst_trc = .TRUE. |
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| 124 | ENDIF |
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| 125 | ! |
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| 126 | END SUBROUTINE trc_rst_opn |
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| 127 | |
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[1801] | 128 | SUBROUTINE trc_rst_read |
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[945] | 129 | !!---------------------------------------------------------------------- |
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| 130 | !! *** trc_rst_opn *** |
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[335] | 131 | !! |
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[945] | 132 | !! ** purpose : read passive tracer fields in restart files |
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| 133 | !!---------------------------------------------------------------------- |
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[1801] | 134 | INTEGER :: jn |
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[5726] | 135 | !! AXY (05/11/13): temporary variables |
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| 136 | REAL(wp) :: fq0,fq1,fq2 |
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[1287] | 137 | |
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[945] | 138 | !!---------------------------------------------------------------------- |
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[3294] | 139 | ! |
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[945] | 140 | IF(lwp) WRITE(numout,*) |
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[3294] | 141 | IF(lwp) WRITE(numout,*) 'trc_rst_read : read data in the TOP restart file' |
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[945] | 142 | IF(lwp) WRITE(numout,*) '~~~~~~~~~~~~' |
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[350] | 143 | |
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[945] | 144 | ! READ prognostic variables and computes diagnostic variable |
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[494] | 145 | DO jn = 1, jptra |
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[1801] | 146 | CALL iom_get( numrtr, jpdom_autoglo, 'TRN'//ctrcnm(jn), trn(:,:,:,jn) ) |
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[335] | 147 | END DO |
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[1077] | 148 | |
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[1287] | 149 | DO jn = 1, jptra |
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[1801] | 150 | CALL iom_get( numrtr, jpdom_autoglo, 'TRB'//ctrcnm(jn), trb(:,:,:,jn) ) |
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[1077] | 151 | END DO |
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[5726] | 152 | |
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| 153 | !! AXY (09/06/14): the ARCHER version of MEDUSA-2 does not include an equivalent |
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| 154 | !! call to MEDUSA-2 at this point; this suggests that the FCM |
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| 155 | !! version of NEMO date significantly earlier than the current |
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| 156 | !! version |
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| 157 | |
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| 158 | #if defined key_medusa |
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| 159 | !! AXY (13/01/12): check if the restart contains sediment fields; |
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| 160 | !! this is only relevant for simulations that include |
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| 161 | !! biogeochemistry and are restarted from earlier runs |
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| 162 | !! in which there was no sediment component |
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| 163 | !! |
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| 164 | IF( iom_varid( numrtr, 'B_SED_N', ldstop = .FALSE. ) > 0 ) THEN |
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| 165 | !! YES; in which case read them |
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| 166 | !! |
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| 167 | IF(lwp) WRITE(numout,*) ' MEDUSA sediment fields present - reading in ...' |
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| 168 | CALL iom_get( numrtr, jpdom_autoglo, 'B_SED_N', zb_sed_n(:,:) ) |
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| 169 | CALL iom_get( numrtr, jpdom_autoglo, 'N_SED_N', zn_sed_n(:,:) ) |
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| 170 | CALL iom_get( numrtr, jpdom_autoglo, 'B_SED_FE', zb_sed_fe(:,:) ) |
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| 171 | CALL iom_get( numrtr, jpdom_autoglo, 'N_SED_FE', zn_sed_fe(:,:) ) |
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| 172 | CALL iom_get( numrtr, jpdom_autoglo, 'B_SED_SI', zb_sed_si(:,:) ) |
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| 173 | CALL iom_get( numrtr, jpdom_autoglo, 'N_SED_SI', zn_sed_si(:,:) ) |
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| 174 | CALL iom_get( numrtr, jpdom_autoglo, 'B_SED_C', zb_sed_c(:,:) ) |
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| 175 | CALL iom_get( numrtr, jpdom_autoglo, 'N_SED_C', zn_sed_c(:,:) ) |
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| 176 | CALL iom_get( numrtr, jpdom_autoglo, 'B_SED_CA', zb_sed_ca(:,:) ) |
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| 177 | CALL iom_get( numrtr, jpdom_autoglo, 'N_SED_CA', zn_sed_ca(:,:) ) |
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| 178 | ELSE |
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| 179 | !! NO; in which case set them to zero |
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| 180 | !! |
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| 181 | IF(lwp) WRITE(numout,*) ' MEDUSA sediment fields absent - setting to zero ...' |
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| 182 | zb_sed_n(:,:) = 0.0 !! organic N |
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| 183 | zn_sed_n(:,:) = 0.0 |
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| 184 | zb_sed_fe(:,:) = 0.0 !! organic Fe |
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| 185 | zn_sed_fe(:,:) = 0.0 |
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| 186 | zb_sed_si(:,:) = 0.0 !! inorganic Si |
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| 187 | zn_sed_si(:,:) = 0.0 |
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| 188 | zb_sed_c(:,:) = 0.0 !! organic C |
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| 189 | zn_sed_c(:,:) = 0.0 |
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| 190 | zb_sed_ca(:,:) = 0.0 !! inorganic C |
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| 191 | zn_sed_ca(:,:) = 0.0 |
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| 192 | ENDIF |
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| 193 | !! |
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| 194 | !! calculate stats on these fields |
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| 195 | IF(lwp) WRITE(numout,*) ' MEDUSA sediment field stats (min, max, sum) ...' |
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| 196 | fq0 = MINVAL(zn_sed_n(:,:)) |
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| 197 | fq1 = MAXVAL(zn_sed_n(:,:)) |
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| 198 | fq2 = SUM(zn_sed_n(:,:)) |
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| 199 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment N ', & |
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| 200 | & fq0, fq1, fq2 |
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| 201 | fq0 = MINVAL(zn_sed_fe(:,:)) |
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| 202 | fq1 = MAXVAL(zn_sed_fe(:,:)) |
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| 203 | fq2 = SUM(zn_sed_fe(:,:)) |
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| 204 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment Fe ', & |
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| 205 | & fq0, fq1, fq2 |
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| 206 | fq0 = MINVAL(zn_sed_si(:,:)) |
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| 207 | fq1 = MAXVAL(zn_sed_si(:,:)) |
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| 208 | fq2 = SUM(zn_sed_si(:,:)) |
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| 209 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment Si ', & |
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| 210 | & fq0, fq1, fq2 |
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| 211 | fq0 = MINVAL(zn_sed_c(:,:)) |
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| 212 | fq1 = MAXVAL(zn_sed_c(:,:)) |
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| 213 | fq2 = SUM(zn_sed_c(:,:)) |
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| 214 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment C ', & |
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| 215 | & fq0, fq1, fq2 |
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| 216 | fq0 = MINVAL(zn_sed_ca(:,:)) |
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| 217 | fq1 = MAXVAL(zn_sed_ca(:,:)) |
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| 218 | fq2 = SUM(zn_sed_ca(:,:)) |
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| 219 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment Ca ', & |
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| 220 | & fq0, fq1, fq2 |
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[6201] | 221 | !! |
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| 222 | !! AXY (07/07/15): read in temporally averaged fields for DMS |
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| 223 | !! calculations |
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| 224 | !! |
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| 225 | IF( iom_varid( numrtr, 'B_DMS_CHN', ldstop = .FALSE. ) > 0 ) THEN |
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| 226 | !! YES; in which case read them |
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| 227 | !! |
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| 228 | IF(lwp) WRITE(numout,*) ' MEDUSA averaged properties for DMS present - reading in ...' |
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| 229 | CALL iom_get( numrtr, jpdom_autoglo, 'B_DMS_CHN', zb_dms_chn(:,:) ) |
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| 230 | CALL iom_get( numrtr, jpdom_autoglo, 'N_DMS_CHN', zn_dms_chn(:,:) ) |
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| 231 | CALL iom_get( numrtr, jpdom_autoglo, 'B_DMS_CHD', zb_dms_chd(:,:) ) |
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| 232 | CALL iom_get( numrtr, jpdom_autoglo, 'N_DMS_CHD', zn_dms_chd(:,:) ) |
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| 233 | CALL iom_get( numrtr, jpdom_autoglo, 'B_DMS_MLD', zb_dms_mld(:,:) ) |
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| 234 | CALL iom_get( numrtr, jpdom_autoglo, 'N_DMS_MLD', zn_dms_mld(:,:) ) |
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| 235 | CALL iom_get( numrtr, jpdom_autoglo, 'B_DMS_QSR', zb_dms_qsr(:,:) ) |
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| 236 | CALL iom_get( numrtr, jpdom_autoglo, 'N_DMS_QSR', zn_dms_qsr(:,:) ) |
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| 237 | CALL iom_get( numrtr, jpdom_autoglo, 'B_DMS_DIN', zb_dms_din(:,:) ) |
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| 238 | CALL iom_get( numrtr, jpdom_autoglo, 'N_DMS_DIN', zn_dms_din(:,:) ) |
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| 239 | ELSE |
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| 240 | !! NO; in which case set them to zero |
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| 241 | !! |
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| 242 | IF(lwp) WRITE(numout,*) ' MEDUSA averaged properties for DMS absent - setting to zero ...' |
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| 243 | zb_dms_chn(:,:) = 0.0 !! CHN |
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| 244 | zn_dms_chn(:,:) = 0.0 |
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| 245 | zb_dms_chd(:,:) = 0.0 !! CHD |
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| 246 | zn_dms_chd(:,:) = 0.0 |
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| 247 | zb_dms_mld(:,:) = 0.0 !! MLD |
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| 248 | zn_dms_mld(:,:) = 0.0 |
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| 249 | zb_dms_qsr(:,:) = 0.0 !! QSR |
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| 250 | zn_dms_qsr(:,:) = 0.0 |
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| 251 | zb_dms_din(:,:) = 0.0 !! DIN |
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| 252 | zn_dms_din(:,:) = 0.0 |
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| 253 | ENDIF |
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| 254 | !! |
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| 255 | !! calculate stats on these fields |
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| 256 | IF(lwp) WRITE(numout,*) ' MEDUSA averaged properties for DMS stats (min, max, sum) ...' |
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| 257 | fq0 = MINVAL(zn_dms_chn(:,:)) |
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| 258 | fq1 = MAXVAL(zn_dms_chn(:,:)) |
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| 259 | fq2 = SUM(zn_dms_chn(:,:)) |
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| 260 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, CHN ', fq0, fq1, fq2 |
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| 261 | fq0 = MINVAL(zn_dms_chd(:,:)) |
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| 262 | fq1 = MAXVAL(zn_dms_chd(:,:)) |
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| 263 | fq2 = SUM(zn_dms_chd(:,:)) |
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| 264 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, CHD ', fq0, fq1, fq2 |
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| 265 | fq0 = MINVAL(zn_dms_mld(:,:)) |
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| 266 | fq1 = MAXVAL(zn_dms_mld(:,:)) |
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| 267 | fq2 = SUM(zn_dms_mld(:,:)) |
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| 268 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, MLD ', fq0, fq1, fq2 |
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| 269 | fq0 = MINVAL(zn_dms_qsr(:,:)) |
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| 270 | fq1 = MAXVAL(zn_dms_qsr(:,:)) |
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| 271 | fq2 = SUM(zn_dms_qsr(:,:)) |
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| 272 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, QSR ', fq0, fq1, fq2 |
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| 273 | fq0 = MINVAL(zn_dms_din(:,:)) |
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| 274 | fq1 = MAXVAL(zn_dms_din(:,:)) |
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| 275 | fq2 = SUM(zn_dms_din(:,:)) |
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| 276 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, DIN ', fq0, fq1, fq2 |
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[5726] | 277 | #endif |
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[945] | 278 | ! |
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[6213] | 279 | #if defined key_idtra |
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| 280 | !! JPALM -- 05-01-2016 -- mv idtra and CFC restart reading and |
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| 281 | !! writting here undre their key. |
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| 282 | !! problems in CFC restart, maybe because of this... |
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| 283 | !! and pb in idtra diag or diad-restart writing. |
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| 284 | !!---------------------------------------------------------------------- |
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| 285 | IF( iom_varid( numrtr, 'qint_idtra', ldstop = .FALSE. ) > 0 ) THEN |
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| 286 | !! YES; in which case read them |
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| 287 | !! |
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| 288 | IF(lwp) WRITE(numout,*) ' IDTRA averaged properties present - reading in ...' |
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| 289 | CALL iom_get( numrtr, jpdom_autoglo, 'qint_IDTRA', qint_idtra(:,:,1) ) |
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| 290 | ELSE |
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| 291 | !! NO; in which case set them to zero |
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| 292 | !! |
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| 293 | IF(lwp) WRITE(numout,*) ' IDTRA averaged properties absent - setting to zero ...' |
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| 294 | qint_idtra(:,:,1) = 0.0 !! CHN |
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| 295 | ENDIF |
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| 296 | !! |
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| 297 | !! calculate stats on these fields |
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| 298 | IF(lwp) WRITE(numout,*) ' IDTRA averaged properties stats (min, max, sum) ...' |
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| 299 | fq0 = MINVAL(qint_idtra(:,:,1)) |
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| 300 | fq1 = MAXVAL(qint_idtra(:,:,1)) |
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| 301 | fq2 = SUM(qint_idtra(:,:,1)) |
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| 302 | if (lwp) write (numout,'(a,3f15.5)') 'qint_idtra ', fq0, fq1, fq2 |
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| 303 | #endif |
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| 304 | ! |
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| 305 | #if defined key_cfc |
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| 306 | DO jn = jp_cfc0, jp_cfc1 |
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| 307 | IF( iom_varid( numrtr, 'qint_'//ctrcnm(jn), ldstop = .FALSE. ) > 0 ) THEN |
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| 308 | !! YES; in which case read them |
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| 309 | !! |
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| 310 | IF(lwp) WRITE(numout,*) ' CFC averaged properties present - reading in ...' |
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| 311 | CALL iom_get( numrtr, jpdom_autoglo, 'qint_'//ctrcnm(jn), qint_cfc(:,:,jn) ) |
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| 312 | ELSE |
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| 313 | !! NO; in which case set them to zero |
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| 314 | !! |
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| 315 | IF(lwp) WRITE(numout,*) ' CFC averaged properties absent - setting to zero ...' |
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| 316 | qint_cfc(:,:,jn) = 0.0 !! CHN |
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| 317 | ENDIF |
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| 318 | !! |
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| 319 | !! calculate stats on these fields |
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| 320 | IF(lwp) WRITE(numout,*) ' CFC averaged properties stats (min, max, sum) ...' |
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| 321 | fq0 = MINVAL(qint_cfc(:,:,jn)) |
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| 322 | fq1 = MAXVAL(qint_cfc(:,:,jn)) |
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| 323 | fq2 = SUM(qint_cfc(:,:,jn)) |
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| 324 | if (lwp) write (numout,'(a,3f15.5)') 'qint_'//ctrcnm(jn), fq0, fq1, fq2 |
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| 325 | END DO |
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| 326 | #endif |
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| 327 | ! |
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[945] | 328 | END SUBROUTINE trc_rst_read |
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[494] | 329 | |
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[945] | 330 | SUBROUTINE trc_rst_wri( kt ) |
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| 331 | !!---------------------------------------------------------------------- |
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| 332 | !! *** trc_rst_wri *** |
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[335] | 333 | !! |
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[945] | 334 | !! ** purpose : write passive tracer fields in restart files |
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| 335 | !!---------------------------------------------------------------------- |
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| 336 | INTEGER, INTENT( in ) :: kt ! ocean time-step index |
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[335] | 337 | !! |
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[1287] | 338 | INTEGER :: jn |
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| 339 | REAL(wp) :: zarak0 |
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[5726] | 340 | !! AXY (05/11/13): temporary variables |
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| 341 | REAL(wp) :: fq0,fq1,fq2 |
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[945] | 342 | !!---------------------------------------------------------------------- |
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[3294] | 343 | ! |
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[2528] | 344 | CALL iom_rstput( kt, nitrst, numrtw, 'rdttrc1', rdttrc(1) ) ! surface passive tracer time step |
---|
[1801] | 345 | ! prognostic variables |
---|
| 346 | ! -------------------- |
---|
[1100] | 347 | DO jn = 1, jptra |
---|
| 348 | CALL iom_rstput( kt, nitrst, numrtw, 'TRN'//ctrcnm(jn), trn(:,:,:,jn) ) |
---|
| 349 | END DO |
---|
[1077] | 350 | |
---|
[1100] | 351 | DO jn = 1, jptra |
---|
| 352 | CALL iom_rstput( kt, nitrst, numrtw, 'TRB'//ctrcnm(jn), trb(:,:,:,jn) ) |
---|
| 353 | END DO |
---|
[5726] | 354 | |
---|
| 355 | !! AXY (09/06/14): the ARCHER version of MEDUSA-2 does not include an equivalent |
---|
| 356 | !! call to MEDUSA-2 at this point; this suggests that the FCM |
---|
| 357 | !! version of NEMO date significantly earlier than the current |
---|
| 358 | !! version |
---|
| 359 | |
---|
| 360 | #if defined key_medusa |
---|
| 361 | !! AXY (13/01/12): write out "before" and "now" state of seafloor |
---|
| 362 | !! sediment pools into restart; this happens |
---|
| 363 | !! whether or not the pools are to be used by |
---|
| 364 | !! MEDUSA (which is controlled by a switch in the |
---|
| 365 | !! namelist_top file) |
---|
| 366 | !! |
---|
| 367 | IF(lwp) WRITE(numout,*) ' MEDUSA sediment fields - writing out ...' |
---|
| 368 | CALL iom_rstput( kt, nitrst, numrtw, 'B_SED_N', zb_sed_n(:,:) ) |
---|
| 369 | CALL iom_rstput( kt, nitrst, numrtw, 'N_SED_N', zn_sed_n(:,:) ) |
---|
| 370 | CALL iom_rstput( kt, nitrst, numrtw, 'B_SED_FE', zb_sed_fe(:,:) ) |
---|
| 371 | CALL iom_rstput( kt, nitrst, numrtw, 'N_SED_FE', zn_sed_fe(:,:) ) |
---|
| 372 | CALL iom_rstput( kt, nitrst, numrtw, 'B_SED_SI', zb_sed_si(:,:) ) |
---|
| 373 | CALL iom_rstput( kt, nitrst, numrtw, 'N_SED_SI', zn_sed_si(:,:) ) |
---|
| 374 | CALL iom_rstput( kt, nitrst, numrtw, 'B_SED_C', zb_sed_c(:,:) ) |
---|
| 375 | CALL iom_rstput( kt, nitrst, numrtw, 'N_SED_C', zn_sed_c(:,:) ) |
---|
| 376 | CALL iom_rstput( kt, nitrst, numrtw, 'B_SED_CA', zb_sed_ca(:,:) ) |
---|
| 377 | CALL iom_rstput( kt, nitrst, numrtw, 'N_SED_CA', zn_sed_ca(:,:) ) |
---|
| 378 | !! |
---|
| 379 | !! calculate stats on these fields |
---|
| 380 | IF(lwp) WRITE(numout,*) ' MEDUSA sediment field stats (min, max, sum) ...' |
---|
| 381 | fq0 = MINVAL(zn_sed_n(:,:)) |
---|
| 382 | fq1 = MAXVAL(zn_sed_n(:,:)) |
---|
| 383 | fq2 = SUM(zn_sed_n(:,:)) |
---|
| 384 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment N ', & |
---|
| 385 | & fq0, fq1, fq2 |
---|
| 386 | fq0 = MINVAL(zn_sed_fe(:,:)) |
---|
| 387 | fq1 = MAXVAL(zn_sed_fe(:,:)) |
---|
| 388 | fq2 = SUM(zn_sed_fe(:,:)) |
---|
| 389 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment Fe ', & |
---|
| 390 | & fq0, fq1, fq2 |
---|
| 391 | fq0 = MINVAL(zn_sed_si(:,:)) |
---|
| 392 | fq1 = MAXVAL(zn_sed_si(:,:)) |
---|
| 393 | fq2 = SUM(zn_sed_si(:,:)) |
---|
| 394 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment Si ', & |
---|
| 395 | & fq0, fq1, fq2 |
---|
| 396 | fq0 = MINVAL(zn_sed_c(:,:)) |
---|
| 397 | fq1 = MAXVAL(zn_sed_c(:,:)) |
---|
| 398 | fq2 = SUM(zn_sed_c(:,:)) |
---|
| 399 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment C ', & |
---|
| 400 | & fq0, fq1, fq2 |
---|
| 401 | fq0 = MINVAL(zn_sed_ca(:,:)) |
---|
| 402 | fq1 = MAXVAL(zn_sed_ca(:,:)) |
---|
| 403 | fq2 = SUM(zn_sed_ca(:,:)) |
---|
| 404 | if (lwp) write (numout,'(a,3f15.5)') 'Sediment Ca ', & |
---|
| 405 | & fq0, fq1, fq2 |
---|
[6201] | 406 | !! |
---|
| 407 | !! AXY (07/07/15): write out temporally averaged fields for DMS |
---|
| 408 | !! calculations |
---|
| 409 | !! |
---|
| 410 | IF(lwp) WRITE(numout,*) ' MEDUSA averaged properties for DMS - writing out ...' |
---|
| 411 | CALL iom_rstput( kt, nitrst, numrtw, 'B_DMS_CHN', zb_dms_chn(:,:) ) |
---|
| 412 | CALL iom_rstput( kt, nitrst, numrtw, 'N_DMS_CHN', zn_dms_chn(:,:) ) |
---|
| 413 | CALL iom_rstput( kt, nitrst, numrtw, 'B_DMS_CHD', zb_dms_chd(:,:) ) |
---|
| 414 | CALL iom_rstput( kt, nitrst, numrtw, 'N_DMS_CHD', zn_dms_chd(:,:) ) |
---|
| 415 | CALL iom_rstput( kt, nitrst, numrtw, 'B_DMS_MLD', zb_dms_mld(:,:) ) |
---|
| 416 | CALL iom_rstput( kt, nitrst, numrtw, 'N_DMS_MLD', zn_dms_mld(:,:) ) |
---|
| 417 | CALL iom_rstput( kt, nitrst, numrtw, 'B_DMS_QSR', zb_dms_qsr(:,:) ) |
---|
| 418 | CALL iom_rstput( kt, nitrst, numrtw, 'N_DMS_QSR', zn_dms_qsr(:,:) ) |
---|
| 419 | CALL iom_rstput( kt, nitrst, numrtw, 'B_DMS_DIN', zb_dms_din(:,:) ) |
---|
| 420 | CALL iom_rstput( kt, nitrst, numrtw, 'N_DMS_DIN', zn_dms_din(:,:) ) |
---|
| 421 | !! |
---|
| 422 | !! calculate stats on these fields |
---|
| 423 | IF(lwp) WRITE(numout,*) ' MEDUSA averaged properties for DMS stats (min, max, sum) ...' |
---|
| 424 | fq0 = MINVAL(zn_dms_chn(:,:)) |
---|
| 425 | fq1 = MAXVAL(zn_dms_chn(:,:)) |
---|
| 426 | fq2 = SUM(zn_dms_chn(:,:)) |
---|
| 427 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, CHN ', fq0, fq1, fq2 |
---|
| 428 | fq0 = MINVAL(zn_dms_chd(:,:)) |
---|
| 429 | fq1 = MAXVAL(zn_dms_chd(:,:)) |
---|
| 430 | fq2 = SUM(zn_dms_chd(:,:)) |
---|
| 431 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, CHD ', fq0, fq1, fq2 |
---|
| 432 | fq0 = MINVAL(zn_dms_mld(:,:)) |
---|
| 433 | fq1 = MAXVAL(zn_dms_mld(:,:)) |
---|
| 434 | fq2 = SUM(zn_dms_mld(:,:)) |
---|
| 435 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, MLD ', fq0, fq1, fq2 |
---|
| 436 | fq0 = MINVAL(zn_dms_qsr(:,:)) |
---|
| 437 | fq1 = MAXVAL(zn_dms_qsr(:,:)) |
---|
| 438 | fq2 = SUM(zn_dms_qsr(:,:)) |
---|
| 439 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, QSR ', fq0, fq1, fq2 |
---|
| 440 | fq0 = MINVAL(zn_dms_din(:,:)) |
---|
| 441 | fq1 = MAXVAL(zn_dms_din(:,:)) |
---|
| 442 | fq2 = SUM(zn_dms_din(:,:)) |
---|
| 443 | if (lwp) write (numout,'(a,3f15.5)') 'DMS, DIN ', fq0, fq1, fq2 |
---|
| 444 | !! |
---|
[5726] | 445 | #endif |
---|
[6213] | 446 | ! |
---|
| 447 | #if defined key_idtra |
---|
| 448 | !! JPALM -- 05-01-2016 -- mv idtra and CFC restart reading and |
---|
| 449 | !! writting here undre their key. |
---|
| 450 | !! problems in CFC restart, maybe because of this... |
---|
| 451 | !! and pb in idtra diag or diad-restart writing. |
---|
| 452 | !!---------------------------------------------------------------------- |
---|
| 453 | IF(lwp) WRITE(numout,*) ' IDTRA averaged properties - writing out ...' |
---|
| 454 | CALL iom_rstput( kt, nitrst, numrtw, 'qint_IDTRA', qint_idtra(:,:,1) ) |
---|
| 455 | !! |
---|
| 456 | !! calculate stats on these fields |
---|
| 457 | IF(lwp) WRITE(numout,*) ' IDTRA averaged properties stats (min, max, sum) ...' |
---|
| 458 | fq0 = MINVAL(qint_idtra(:,:,1)) |
---|
| 459 | fq1 = MAXVAL(qint_idtra(:,:,1)) |
---|
| 460 | fq2 = SUM(qint_idtra(:,:,1)) |
---|
| 461 | if (lwp) write (numout,'(a,3f15.5)') 'qint_idtra ', fq0, fq1, fq2 |
---|
| 462 | #endif |
---|
| 463 | ! |
---|
| 464 | #if defined key_cfc |
---|
| 465 | DO jn = jp_cfc0, jp_cfc1 |
---|
| 466 | IF(lwp) WRITE(numout,*) ' CFC averaged properties - writing out ...' |
---|
| 467 | CALL iom_rstput( kt, nitrst, numrtw, 'qint_'//ctrcnm(jn), qint_cfc(:,:,jn) ) |
---|
| 468 | !! |
---|
| 469 | !! calculate stats on these fields |
---|
| 470 | IF(lwp) WRITE(numout,*) ' CFC averaged properties stats (min, max, sum) ...' |
---|
| 471 | fq0 = MINVAL(qint_cfc(:,:,jn)) |
---|
| 472 | fq1 = MAXVAL(qint_cfc(:,:,jn)) |
---|
| 473 | fq2 = SUM(qint_cfc(:,:,jn)) |
---|
| 474 | if (lwp) write (numout,'(a,3f15.5)') 'qint_'//ctrcnm(jn), fq0, fq1, fq2 |
---|
| 475 | END DO |
---|
| 476 | #endif |
---|
| 477 | ! |
---|
[5726] | 478 | |
---|
[1287] | 479 | IF( kt == nitrst ) THEN |
---|
[1119] | 480 | CALL trc_rst_stat ! statistics |
---|
[1100] | 481 | CALL iom_close( numrtw ) ! close the restart file (only at last time step) |
---|
[4990] | 482 | #if ! defined key_trdmxl_trc |
---|
[1100] | 483 | lrst_trc = .FALSE. |
---|
[1177] | 484 | #endif |
---|
[5341] | 485 | IF( lk_offline .AND. ln_rst_list ) THEN |
---|
| 486 | nrst_lst = nrst_lst + 1 |
---|
| 487 | nitrst = nstocklist( nrst_lst ) |
---|
| 488 | ENDIF |
---|
[1287] | 489 | ENDIF |
---|
[945] | 490 | ! |
---|
[1801] | 491 | END SUBROUTINE trc_rst_wri |
---|
[268] | 492 | |
---|
[1801] | 493 | |
---|
[1287] | 494 | SUBROUTINE trc_rst_cal( kt, cdrw ) |
---|
| 495 | !!--------------------------------------------------------------------- |
---|
| 496 | !! *** ROUTINE trc_rst_cal *** |
---|
| 497 | !! |
---|
| 498 | !! ** Purpose : Read or write calendar in restart file: |
---|
| 499 | !! |
---|
| 500 | !! WRITE(READ) mode: |
---|
| 501 | !! kt : number of time step since the begining of the experiment at the |
---|
| 502 | !! end of the current(previous) run |
---|
| 503 | !! adatrj(0) : number of elapsed days since the begining of the experiment at the |
---|
| 504 | !! end of the current(previous) run (REAL -> keep fractions of day) |
---|
| 505 | !! ndastp : date at the end of the current(previous) run (coded as yyyymmdd integer) |
---|
| 506 | !! |
---|
| 507 | !! According to namelist parameter nrstdt, |
---|
[3294] | 508 | !! nn_rsttr = 0 no control on the date (nittrc000 is arbitrary). |
---|
| 509 | !! nn_rsttr = 1 we verify that nittrc000 is equal to the last |
---|
[1287] | 510 | !! time step of previous run + 1. |
---|
| 511 | !! In both those options, the exact duration of the experiment |
---|
| 512 | !! since the beginning (cumulated duration of all previous restart runs) |
---|
[3294] | 513 | !! is not stored in the restart and is assumed to be (nittrc000-1)*rdt. |
---|
[1287] | 514 | !! This is valid is the time step has remained constant. |
---|
| 515 | !! |
---|
[2528] | 516 | !! nn_rsttr = 2 the duration of the experiment in days (adatrj) |
---|
[1287] | 517 | !! has been stored in the restart file. |
---|
| 518 | !!---------------------------------------------------------------------- |
---|
| 519 | INTEGER , INTENT(in) :: kt ! ocean time-step |
---|
| 520 | CHARACTER(len=*), INTENT(in) :: cdrw ! "READ"/"WRITE" flag |
---|
| 521 | ! |
---|
[3294] | 522 | INTEGER :: jlibalt = jprstlib |
---|
| 523 | LOGICAL :: llok |
---|
[2528] | 524 | REAL(wp) :: zkt, zrdttrc1 |
---|
[1287] | 525 | REAL(wp) :: zndastp |
---|
| 526 | |
---|
| 527 | ! Time domain : restart |
---|
| 528 | ! --------------------- |
---|
| 529 | |
---|
| 530 | IF( TRIM(cdrw) == 'READ' ) THEN |
---|
[3294] | 531 | |
---|
| 532 | IF(lwp) WRITE(numout,*) |
---|
| 533 | IF(lwp) WRITE(numout,*) 'trc_rst_cal : read the TOP restart file for calendar' |
---|
| 534 | IF(lwp) WRITE(numout,*) '~~~~~~~~~~~~' |
---|
| 535 | |
---|
| 536 | IF ( jprstlib == jprstdimg ) THEN |
---|
| 537 | ! eventually read netcdf file (monobloc) for restarting on different number of processors |
---|
| 538 | ! if {cn_trcrst_in}.nc exists, then set jlibalt to jpnf90 |
---|
[5341] | 539 | INQUIRE( FILE = TRIM(cn_trcrst_indir)//'/'//TRIM(cn_trcrst_in)//'.nc', EXIST = llok ) |
---|
[3294] | 540 | IF ( llok ) THEN ; jlibalt = jpnf90 ; ELSE ; jlibalt = jprstlib ; ENDIF |
---|
| 541 | ENDIF |
---|
| 542 | |
---|
[5513] | 543 | IF( ln_rsttr ) THEN |
---|
| 544 | CALL iom_open( TRIM(cn_trcrst_indir)//'/'//cn_trcrst_in, numrtr, kiolib = jlibalt ) |
---|
| 545 | CALL iom_get ( numrtr, 'kt', zkt ) ! last time-step of previous run |
---|
[3294] | 546 | |
---|
[5513] | 547 | IF(lwp) THEN |
---|
| 548 | WRITE(numout,*) ' *** Info read in restart : ' |
---|
| 549 | WRITE(numout,*) ' previous time-step : ', NINT( zkt ) |
---|
| 550 | WRITE(numout,*) ' *** restart option' |
---|
| 551 | SELECT CASE ( nn_rsttr ) |
---|
| 552 | CASE ( 0 ) ; WRITE(numout,*) ' nn_rsttr = 0 : no control of nittrc000' |
---|
| 553 | CASE ( 1 ) ; WRITE(numout,*) ' nn_rsttr = 1 : no control the date at nittrc000 (use ndate0 read in the namelist)' |
---|
| 554 | CASE ( 2 ) ; WRITE(numout,*) ' nn_rsttr = 2 : calendar parameters read in restart' |
---|
| 555 | END SELECT |
---|
| 556 | WRITE(numout,*) |
---|
| 557 | ENDIF |
---|
| 558 | ! Control of date |
---|
| 559 | IF( nittrc000 - NINT( zkt ) /= nn_dttrc .AND. nn_rsttr /= 0 ) & |
---|
| 560 | & CALL ctl_stop( ' ===>>>> : problem with nittrc000 for the restart', & |
---|
| 561 | & ' verify the restart file or rerun with nn_rsttr = 0 (namelist)' ) |
---|
[1287] | 562 | ENDIF |
---|
[5513] | 563 | ! |
---|
[5504] | 564 | IF( lk_offline ) THEN |
---|
| 565 | ! ! set the date in offline mode |
---|
| 566 | IF( ln_rsttr .AND. nn_rsttr == 2 ) THEN |
---|
[2528] | 567 | CALL iom_get( numrtr, 'ndastp', zndastp ) |
---|
| 568 | ndastp = NINT( zndastp ) |
---|
| 569 | CALL iom_get( numrtr, 'adatrj', adatrj ) |
---|
[5504] | 570 | ELSE |
---|
[2528] | 571 | ndastp = ndate0 - 1 ! ndate0 read in the namelist in dom_nam |
---|
[3294] | 572 | adatrj = ( REAL( nittrc000-1, wp ) * rdttra(1) ) / rday |
---|
[2528] | 573 | ! note this is wrong if time step has changed during run |
---|
| 574 | ENDIF |
---|
| 575 | ! |
---|
| 576 | IF(lwp) THEN |
---|
| 577 | WRITE(numout,*) ' *** Info used values : ' |
---|
| 578 | WRITE(numout,*) ' date ndastp : ', ndastp |
---|
| 579 | WRITE(numout,*) ' number of elapsed days since the begining of run : ', adatrj |
---|
| 580 | WRITE(numout,*) |
---|
| 581 | ENDIF |
---|
| 582 | ! |
---|
[5504] | 583 | IF( ln_rsttr ) THEN ; neuler = 1 |
---|
| 584 | ELSE ; neuler = 0 |
---|
| 585 | ENDIF |
---|
| 586 | ! |
---|
[2528] | 587 | CALL day_init ! compute calendar |
---|
| 588 | ! |
---|
[1287] | 589 | ENDIF |
---|
| 590 | ! |
---|
| 591 | ELSEIF( TRIM(cdrw) == 'WRITE' ) THEN |
---|
| 592 | ! |
---|
| 593 | IF( kt == nitrst ) THEN |
---|
| 594 | IF(lwp) WRITE(numout,*) |
---|
| 595 | IF(lwp) WRITE(numout,*) 'trc_wri : write the TOP restart file (NetCDF) at it= ', kt, ' date= ', ndastp |
---|
| 596 | IF(lwp) WRITE(numout,*) '~~~~~~~' |
---|
| 597 | ENDIF |
---|
| 598 | CALL iom_rstput( kt, nitrst, numrtw, 'kt' , REAL( kt , wp) ) ! time-step |
---|
| 599 | CALL iom_rstput( kt, nitrst, numrtw, 'ndastp' , REAL( ndastp, wp) ) ! date |
---|
| 600 | CALL iom_rstput( kt, nitrst, numrtw, 'adatrj' , adatrj ) ! number of elapsed days since |
---|
| 601 | ! ! the begining of the run [s] |
---|
| 602 | ENDIF |
---|
| 603 | |
---|
| 604 | END SUBROUTINE trc_rst_cal |
---|
| 605 | |
---|
[1119] | 606 | |
---|
| 607 | SUBROUTINE trc_rst_stat |
---|
| 608 | !!---------------------------------------------------------------------- |
---|
| 609 | !! *** trc_rst_stat *** |
---|
| 610 | !! |
---|
| 611 | !! ** purpose : Compute tracers statistics |
---|
| 612 | !!---------------------------------------------------------------------- |
---|
[3294] | 613 | INTEGER :: jk, jn |
---|
| 614 | REAL(wp) :: ztraf, zmin, zmax, zmean, zdrift |
---|
[5385] | 615 | REAL(wp), DIMENSION(jpi,jpj,jpk) :: zvol |
---|
[1119] | 616 | !!---------------------------------------------------------------------- |
---|
| 617 | |
---|
| 618 | IF( lwp ) THEN |
---|
| 619 | WRITE(numout,*) |
---|
| 620 | WRITE(numout,*) ' ----TRACER STAT---- ' |
---|
| 621 | WRITE(numout,*) |
---|
| 622 | ENDIF |
---|
[3294] | 623 | ! |
---|
[5385] | 624 | DO jk = 1, jpk |
---|
| 625 | zvol(:,:,jk) = e1e2t(:,:) * fse3t_a(:,:,jk) * tmask(:,:,jk) |
---|
| 626 | END DO |
---|
| 627 | ! |
---|
[1119] | 628 | DO jn = 1, jptra |
---|
[5385] | 629 | ztraf = glob_sum( trn(:,:,:,jn) * zvol(:,:,:) ) |
---|
[3294] | 630 | zmin = MINVAL( trn(:,:,:,jn), mask= ((tmask*SPREAD(tmask_i,DIM=3,NCOPIES=jpk).NE.0.)) ) |
---|
| 631 | zmax = MAXVAL( trn(:,:,:,jn), mask= ((tmask*SPREAD(tmask_i,DIM=3,NCOPIES=jpk).NE.0.)) ) |
---|
[1119] | 632 | IF( lk_mpp ) THEN |
---|
[3294] | 633 | CALL mpp_min( zmin ) ! min over the global domain |
---|
| 634 | CALL mpp_max( zmax ) ! max over the global domain |
---|
[1119] | 635 | END IF |
---|
[3294] | 636 | zmean = ztraf / areatot |
---|
| 637 | zdrift = ( ( ztraf - trai(jn) ) / ( trai(jn) + 1.e-12 ) ) * 100._wp |
---|
| 638 | IF(lwp) WRITE(numout,9000) jn, TRIM( ctrcnm(jn) ), zmean, zmin, zmax, zdrift |
---|
[1119] | 639 | END DO |
---|
[3294] | 640 | WRITE(numout,*) |
---|
| 641 | 9000 FORMAT(' tracer nb :',i2,' name :',a10,' mean :',e18.10,' min :',e18.10, & |
---|
| 642 | & ' max :',e18.10,' drift :',e18.10, ' %') |
---|
| 643 | ! |
---|
[1119] | 644 | END SUBROUTINE trc_rst_stat |
---|
| 645 | |
---|
[268] | 646 | #else |
---|
[945] | 647 | !!---------------------------------------------------------------------- |
---|
| 648 | !! Dummy module : No passive tracer |
---|
| 649 | !!---------------------------------------------------------------------- |
---|
[335] | 650 | CONTAINS |
---|
[945] | 651 | SUBROUTINE trc_rst_read ! Empty routines |
---|
[616] | 652 | END SUBROUTINE trc_rst_read |
---|
[945] | 653 | SUBROUTINE trc_rst_wri( kt ) |
---|
[335] | 654 | INTEGER, INTENT ( in ) :: kt |
---|
[616] | 655 | WRITE(*,*) 'trc_rst_wri: You should not have seen this print! error?', kt |
---|
[945] | 656 | END SUBROUTINE trc_rst_wri |
---|
[268] | 657 | #endif |
---|
[945] | 658 | |
---|
[2528] | 659 | !!---------------------------------------------------------------------- |
---|
| 660 | !! NEMO/TOP 3.3 , NEMO Consortium (2010) |
---|
[5341] | 661 | !! $Id$ |
---|
[2528] | 662 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
---|
[945] | 663 | !!====================================================================== |
---|
[335] | 664 | END MODULE trcrst |
---|