1 | MODULE trcnam_medusa |
---|
2 | !!====================================================================== |
---|
3 | !! *** MODULE trcnam_medusa *** |
---|
4 | !! TOP : initialisation of some run parameters for MEDUSA bio-model |
---|
5 | !!====================================================================== |
---|
6 | !! History : 2.0 ! 2007-12 (C. Ethe, G. Madec) Original code |
---|
7 | !! - ! 2008-08 (K. Popova) adaptation for MEDUSA |
---|
8 | !! - ! 2008-11 (A. Yool) continuing adaptation for MEDUSA |
---|
9 | !! - ! 2010-03 (A. Yool) updated for branch inclusion |
---|
10 | !! - ! 2011-04 (A. Yool) updated for ROAM project |
---|
11 | !! - ! 2013-05 (A. Yool) renamed (from trclsm) for v3.5 |
---|
12 | !!---------------------------------------------------------------------- |
---|
13 | #if defined key_medusa |
---|
14 | !!---------------------------------------------------------------------- |
---|
15 | !! 'key_medusa' : MEDUSA model |
---|
16 | !!---------------------------------------------------------------------- |
---|
17 | !! trc_nam_medusa : MEDUSA model initialisation |
---|
18 | !!---------------------------------------------------------------------- |
---|
19 | USE oce_trc ! Ocean variables |
---|
20 | USE par_trc ! TOP parameters |
---|
21 | USE trc ! TOP variables |
---|
22 | USE sms_medusa ! sms trends |
---|
23 | USE iom ! I/O manager |
---|
24 | |
---|
25 | !! AXY (04/02/14): necessary to find NaNs on HECTOR |
---|
26 | USE, INTRINSIC :: ieee_arithmetic |
---|
27 | |
---|
28 | IMPLICIT NONE |
---|
29 | PRIVATE |
---|
30 | |
---|
31 | PUBLIC trc_nam_medusa ! called by trcnam.F90 module |
---|
32 | |
---|
33 | !!* Substitution |
---|
34 | # include "domzgr_substitute.h90" |
---|
35 | !!---------------------------------------------------------------------- |
---|
36 | !! NEMO/TOP 2.0 , LOCEAN-IPSL (2007) |
---|
37 | !! $Id$ |
---|
38 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
---|
39 | !!---------------------------------------------------------------------- |
---|
40 | |
---|
41 | CONTAINS |
---|
42 | |
---|
43 | SUBROUTINE trc_nam_medusa |
---|
44 | !!---------------------------------------------------------------------- |
---|
45 | !! *** trc_nam_medusa *** |
---|
46 | !! |
---|
47 | !! ** Purpose : read MEDUSA namelist |
---|
48 | !! |
---|
49 | !! ** input : file 'namelist.trc.sms' containing the following |
---|
50 | !! namelist: natbio, natopt, and natdbi ("key_trc_diabio") |
---|
51 | !! |
---|
52 | !! ekp: namelist nabio contains ALL parameters of the ecosystem |
---|
53 | !! point sourses and sinks PLUS sediment exchange |
---|
54 | !! dia_bio - used by Lobster to output all point terms |
---|
55 | !! (sourses and sinks of bio) |
---|
56 | !! dia_add - additional diagnostics for biology such as |
---|
57 | !! primary production (2d depth integrated field or 3d) |
---|
58 | !!---------------------------------------------------------------------- |
---|
59 | !! |
---|
60 | INTEGER :: ji,jj,jk |
---|
61 | REAL(wp) :: fthk, fdep, fdep1 |
---|
62 | REAL(wp) :: q1, q2, q3 |
---|
63 | ! |
---|
64 | NAMELIST/natbio/ xxi,xaln,xald,jphy,xvpn,xvpd, & |
---|
65 | & xsin0,xnsi0,xuif,jliebig, & |
---|
66 | & xthetam,xthetamd,xnln,xnld,xsld,xfln,xfld, & |
---|
67 | & xgmi,xgme,xkmi,xkme,xphi,xbetan,xbetac,xkc, & |
---|
68 | & xpmipn,xpmid,xpmepn,xpmepd,xpmezmi,xpmed, & |
---|
69 | & xmetapn,xmetapd,xmetazmi,xmetazme, & |
---|
70 | & jmpn,xmpn,xkphn,jmpd,xmpd,xkphd,jmzmi,xmzmi,xkzmi, & |
---|
71 | & jmzme,xmzme,xkzme,jmd,jsfd,xmd,xmdc, & |
---|
72 | & xthetapn,xthetapd,xthetazmi,xthetazme,xthetad, & |
---|
73 | & xrfn,xrsn,vsed,xhr, & |
---|
74 | & jiron,xfe_mass,xfe_sol,xfe_sed,xLgT,xk_FeL,xk_sc_Fe, & |
---|
75 | & jexport,jfdfate,jrratio,jocalccd,xridg_r0, & |
---|
76 | & xfdfrac1,xfdfrac2,xfdfrac3, & |
---|
77 | & xcaco3a,xcaco3b,xmassc,xmassca,xmasssi,xprotca, & |
---|
78 | & xprotsi,xfastc,xfastca,xfastsi, & |
---|
79 | & jorgben,jinorgben,xsedn,xsedfe,xsedsi,xsedc,xsedca, & |
---|
80 | & xburial, & |
---|
81 | & jriver_n,jriver_si,jriver_c,jriver_alk,jriver_dep, & |
---|
82 | & friver_dep, & |
---|
83 | & xsdiss, & |
---|
84 | & vsed,xhr, & |
---|
85 | & sedlam,sedlostpoc,jpkb,jdms |
---|
86 | #if defined key_roam |
---|
87 | NAMELIST/natroam/ xthetaphy,xthetazoo,xthetanit, & |
---|
88 | & xthetarem,xo2min, & |
---|
89 | & f3_pH,f3_h2co3,f3_hco3,f3_co3,f3_omcal,f3_omarg, & |
---|
90 | & f2_ccd_cal,f2_ccd_arg |
---|
91 | #endif |
---|
92 | NAMELIST/natopt/xkg0,xkr0,xkgp,xkrp,xlg,xlr,rpig |
---|
93 | INTEGER :: jl, jn |
---|
94 | INTEGER :: ios ! Local integer output status for namelist read |
---|
95 | TYPE(DIAG), DIMENSION(jp_medusa_2d) :: meddia2d |
---|
96 | TYPE(DIAG), DIMENSION(jp_medusa_3d) :: meddia3d |
---|
97 | TYPE(DIAG), DIMENSION(jp_medusa_trd) :: meddiabio |
---|
98 | CHARACTER(LEN=32) :: clname |
---|
99 | !! |
---|
100 | NAMELIST/nammeddia/ meddia3d, meddia2d ! additional diagnostics |
---|
101 | |
---|
102 | !!---------------------------------------------------------------------- |
---|
103 | |
---|
104 | IF(lwp) WRITE(numout,*) |
---|
105 | clname = 'namelist_medusa' |
---|
106 | IF(lwp) WRITE(numout,*) ' trc_nam_medusa: read MEDUSA namelist' |
---|
107 | IF(lwp) WRITE(numout,*) ' ~~~~~~~~~~~~~~' |
---|
108 | # if defined key_debug_medusa |
---|
109 | CALL flush(numout) |
---|
110 | # endif |
---|
111 | |
---|
112 | |
---|
113 | CALL ctl_opn( numnatp_ref, TRIM( clname )//'_ref', 'OLD', 'FORMATTED', 'SEQUENTIAL', -1, numout, .FALSE. ) |
---|
114 | CALL ctl_opn( numnatp_cfg, TRIM( clname )//'_cfg', 'OLD', 'FORMATTED', 'SEQUENTIAL', -1, numout, .FALSE. ) |
---|
115 | IF(lwm) CALL ctl_opn( numonp , 'output.namelist.pis' , 'UNKNOWN', 'FORMATTED', 'SEQUENTIAL', -1, numout, .FALSE. ) |
---|
116 | |
---|
117 | # if defined key_debug_medusa |
---|
118 | CALL flush(numout) |
---|
119 | IF (lwp) write (numout,*) '------------------------------' |
---|
120 | IF (lwp) write (numout,*) 'Jpalm - debug' |
---|
121 | IF (lwp) write (numout,*) 'open namelist_medusa -- OK' |
---|
122 | IF (lwp) write (numout,*) 'Now, read namilists inside :' |
---|
123 | IF (lwp) write (numout,*) ' ' |
---|
124 | # endif |
---|
125 | ! |
---|
126 | # if defined key_debug_medusa |
---|
127 | CALL flush(numout) |
---|
128 | # endif |
---|
129 | ! |
---|
130 | # if defined key_debug_medusa |
---|
131 | IF (lwp) write (numout,*) '------------------------------' |
---|
132 | IF (lwp) write (numout,*) 'Jpalm - debug' |
---|
133 | IF (lwp) write (numout,*) 'Just before reading namelist_medusa :: nammeddia' |
---|
134 | IF (lwp) write (numout,*) ' ' |
---|
135 | CALL flush(numout) |
---|
136 | # endif |
---|
137 | |
---|
138 | IF( ( .NOT.lk_iomput .AND. ln_diatrc ) .OR. ( ln_diatrc .AND. lk_medusa ) ) THEN |
---|
139 | ! |
---|
140 | ! Namelist nampisdia |
---|
141 | ! ------------------- |
---|
142 | REWIND( numnatp_ref ) ! Namelist nampisdia in reference namelist : Pisces diagnostics |
---|
143 | READ ( numnatp_ref, nammeddia, IOSTAT = ios, ERR = 901) |
---|
144 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in reference namelist', lwp ) |
---|
145 | |
---|
146 | REWIND( numnatp_cfg ) ! Namelist nampisdia in configuration namelist : Pisces diagnostics |
---|
147 | READ ( numnatp_cfg, nammeddia, IOSTAT = ios, ERR = 902 ) |
---|
148 | 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in configuration namelist', lwp ) |
---|
149 | IF(lwm) WRITE ( numonp, nammeddia ) |
---|
150 | |
---|
151 | # if defined key_debug_medusa |
---|
152 | IF (lwp) write (numout,*) '------------------------------' |
---|
153 | IF (lwp) write (numout,*) 'Jpalm - debug' |
---|
154 | IF (lwp) write (numout,*) 'reading namelist_medusa :: nammeddia OK' |
---|
155 | IF (lwp) write (numout,*) 'Check number of variable in nammeddia:' |
---|
156 | IF (lwp) write (numout,*) 'jp_medusa_2d: ',jp_medusa_2d ,'jp_medusa_3d: ',jp_medusa_3d |
---|
157 | IF (lwp) write (numout,*) ' ' |
---|
158 | CALL flush(numout) |
---|
159 | # endif |
---|
160 | DO jl = 1, jp_medusa_2d |
---|
161 | jn = jp_msa0_2d + jl - 1 |
---|
162 | # if defined key_debug_medusa |
---|
163 | IF (lwp) write (numout,*) 'Check what is readden in nammeddia: -- 2D' |
---|
164 | IF (lwp) write (numout,*) jl,'meddia2d-sname: ',meddia2d(jl)%sname |
---|
165 | IF (lwp) write (numout,*) jl,'meddia2d-lname: ',meddia2d(jl)%lname |
---|
166 | IF (lwp) write (numout,*) jl,'meddia2d-units: ',meddia2d(jl)%units |
---|
167 | CALL flush(numout) |
---|
168 | # endif |
---|
169 | ctrc2d(jn) = meddia2d(jl)%sname |
---|
170 | ctrc2l(jn) = meddia2d(jl)%lname |
---|
171 | ctrc2u(jn) = meddia2d(jl)%units |
---|
172 | END DO |
---|
173 | |
---|
174 | DO jl = 1, jp_medusa_3d |
---|
175 | jn = jp_msa0_3d + jl - 1 |
---|
176 | # if defined key_debug_medusa |
---|
177 | IF (lwp) write (numout,*) 'Check what is readden in nammeddia: -- 3D' |
---|
178 | IF (lwp) write (numout,*) jl,'meddia3d-sname: ',meddia3d(jl)%sname |
---|
179 | IF (lwp) write (numout,*) jl,'meddia3d-lname: ',meddia3d(jl)%lname |
---|
180 | IF (lwp) write (numout,*) jl,'meddia3d-units: ',meddia3d(jl)%units |
---|
181 | CALL flush(numout) |
---|
182 | # endif |
---|
183 | ctrc3d(jn) = meddia3d(jl)%sname |
---|
184 | ctrc3l(jn) = meddia3d(jl)%lname |
---|
185 | ctrc3u(jn) = meddia3d(jl)%units |
---|
186 | END DO |
---|
187 | |
---|
188 | IF(lwp) THEN ! control print |
---|
189 | # if defined key_debug_medusa |
---|
190 | IF (lwp) write (numout,*) '------------------------------' |
---|
191 | IF (lwp) write (numout,*) 'Jpalm - debug' |
---|
192 | IF (lwp) write (numout,*) 'Var name assignation OK' |
---|
193 | IF (lwp) write (numout,*) 'next check var names' |
---|
194 | IF (lwp) write (numout,*) ' ' |
---|
195 | CALL flush(numout) |
---|
196 | # endif |
---|
197 | WRITE(numout,*) |
---|
198 | WRITE(numout,*) ' Namelist : natadd' |
---|
199 | DO jl = 1, jp_medusa_3d |
---|
200 | jn = jp_msa0_3d + jl - 1 |
---|
201 | WRITE(numout,*) ' 3d diag nb : ', jn, ' short name : ', ctrc3d(jn), & |
---|
202 | & ' long name : ', ctrc3l(jn), ' unit : ', ctrc3u(jn) |
---|
203 | END DO |
---|
204 | WRITE(numout,*) ' ' |
---|
205 | |
---|
206 | DO jl = 1, jp_medusa_2d |
---|
207 | jn = jp_msa0_2d + jl - 1 |
---|
208 | WRITE(numout,*) ' 2d diag nb : ', jn, ' short name : ', ctrc2d(jn), & |
---|
209 | & ' long name : ', ctrc2l(jn), ' unit : ', ctrc2u(jn) |
---|
210 | END DO |
---|
211 | WRITE(numout,*) ' ' |
---|
212 | ENDIF |
---|
213 | ! |
---|
214 | ENDIF |
---|
215 | ! |
---|
216 | # if defined key_debug_medusa |
---|
217 | CALL flush(numout) |
---|
218 | # endif |
---|
219 | |
---|
220 | ! 1.4 namelist natbio : biological parameters |
---|
221 | ! ------------------------------------------- |
---|
222 | |
---|
223 | xxi = 0. |
---|
224 | xaln = 0. |
---|
225 | xald = 0. |
---|
226 | jphy = 0 |
---|
227 | xvpn = 0. |
---|
228 | xvpd = 0. |
---|
229 | xthetam = 0. |
---|
230 | xthetamd = 0. |
---|
231 | !! |
---|
232 | xsin0 = 0. |
---|
233 | xnsi0 = 0. |
---|
234 | xuif = 0. |
---|
235 | !! |
---|
236 | jliebig = 0 |
---|
237 | xnln = 0. |
---|
238 | xnld = 0. |
---|
239 | xsld = 0. |
---|
240 | xfln = 0. |
---|
241 | xfld = 0. |
---|
242 | !! |
---|
243 | xgmi = 0. |
---|
244 | xgme = 0. |
---|
245 | xkmi = 0. |
---|
246 | xkme = 0. |
---|
247 | xphi = 0. |
---|
248 | xbetan = 0. |
---|
249 | xbetac = 0. |
---|
250 | xkc = 0. |
---|
251 | xpmipn = 0. |
---|
252 | xpmid = 0. |
---|
253 | xpmepn = 0. |
---|
254 | xpmepd = 0. |
---|
255 | xpmezmi = 0. |
---|
256 | xpmed = 0. |
---|
257 | !! |
---|
258 | xmetapn = 0. |
---|
259 | xmetapd = 0. |
---|
260 | xmetazmi = 0. |
---|
261 | xmetazme = 0. |
---|
262 | !! |
---|
263 | jmpn = 0 |
---|
264 | xmpn = 0. |
---|
265 | xkphn = 0. |
---|
266 | jmpd = 0 |
---|
267 | xmpd = 0. |
---|
268 | xkphd = 0. |
---|
269 | jmzmi = 0 |
---|
270 | xmzmi = 0. |
---|
271 | xkzmi = 0. |
---|
272 | jmzme = 0 |
---|
273 | xmzme = 0. |
---|
274 | xkzme = 0. |
---|
275 | !! |
---|
276 | jmd = 0 |
---|
277 | jsfd = 0 |
---|
278 | xmd = 0. |
---|
279 | xmdc = 0. |
---|
280 | !! |
---|
281 | xthetapn = 0. |
---|
282 | xthetapd = 0. |
---|
283 | xthetazmi = 0. |
---|
284 | xthetazme = 0. |
---|
285 | xthetad = 0. |
---|
286 | xrfn = 0. |
---|
287 | xrsn = 0. !: (NOT USED HERE; RETAINED FOR LOBSTER) |
---|
288 | !! |
---|
289 | jiron = 0 |
---|
290 | xfe_mass = 0. |
---|
291 | xfe_sol = 0. |
---|
292 | xfe_sed = 0. |
---|
293 | xLgT = 0. |
---|
294 | xk_FeL = 0. |
---|
295 | xk_sc_Fe = 0. |
---|
296 | !! |
---|
297 | jexport = 0 |
---|
298 | jfdfate = 0 |
---|
299 | jrratio = 0 |
---|
300 | jocalccd = 0 |
---|
301 | xridg_r0 = 0. |
---|
302 | xfdfrac1 = 0. |
---|
303 | xfdfrac2 = 0. |
---|
304 | xfdfrac3 = 0. |
---|
305 | xcaco3a = 0. |
---|
306 | xcaco3b = 0. |
---|
307 | xmassc = 0. |
---|
308 | xmassca = 0. |
---|
309 | xmasssi = 0. |
---|
310 | xprotca = 0. |
---|
311 | xprotsi = 0. |
---|
312 | xfastc = 0. |
---|
313 | xfastca = 0. |
---|
314 | xfastsi = 0. |
---|
315 | !! |
---|
316 | jorgben = 0 |
---|
317 | jinorgben = 0 |
---|
318 | xsedn = 0. |
---|
319 | xsedfe = 0. |
---|
320 | xsedsi = 0. |
---|
321 | xsedc = 0. |
---|
322 | xsedca = 0. |
---|
323 | xburial = 0. |
---|
324 | !! |
---|
325 | jriver_n = 0 |
---|
326 | jriver_si = 0 |
---|
327 | jriver_c = 0 |
---|
328 | jriver_alk = 0 |
---|
329 | jriver_dep = 1 |
---|
330 | !! |
---|
331 | xsdiss = 0. |
---|
332 | !! |
---|
333 | vsed = 0. |
---|
334 | xhr = 0. |
---|
335 | !! |
---|
336 | sedlam = 0. |
---|
337 | sedlostpoc = 0. |
---|
338 | jpkb = 0. |
---|
339 | jdms = 0 |
---|
340 | |
---|
341 | !REWIND(numnatm) |
---|
342 | !READ(numnatm,natbio) |
---|
343 | ! Namelist natbio |
---|
344 | ! ------------------- |
---|
345 | REWIND( numnatp_ref ) ! Namelist nampisdia in reference namelist : Pisces diagnostics |
---|
346 | READ ( numnatp_ref, natbio, IOSTAT = ios, ERR = 901) |
---|
347 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in reference namelist', lwp ) |
---|
348 | |
---|
349 | REWIND( numnatp_cfg ) ! Namelist nampisdia in configuration namelist : Pisces diagnostics |
---|
350 | READ ( numnatp_cfg, natbio, IOSTAT = ios, ERR = 902 ) |
---|
351 | 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in configuration namelist', lwp ) |
---|
352 | IF(lwm) WRITE ( numonp, natbio ) |
---|
353 | |
---|
354 | !! Primary production and chl related quantities |
---|
355 | !! xxi : conversion factor from gC to mmolN |
---|
356 | !! xaln : Chl-a specific initial slope of P-I curve for non-diatoms |
---|
357 | !! xald : Chl-a specific initial slope of P-I curve for diatoms |
---|
358 | !! jphy : phytoplankton T-dependent growth switch |
---|
359 | !! xvpn : maximum growth rate for non-diatoms |
---|
360 | !! xvpd : maximum growth rate for diatoms |
---|
361 | !! xthetam : maximum Chl to C ratio for non-diatoms |
---|
362 | !! xthetamd : maximum Chl to C ratio for diatoms |
---|
363 | !! |
---|
364 | !! Diatom silicon parameters |
---|
365 | !! xsin0 : minimum diatom Si:N ratio |
---|
366 | !! xnsi0 : minimum diatom N:Si ratio |
---|
367 | !! xuif : hypothetical growth ratio at infinite Si:N ratio |
---|
368 | !! |
---|
369 | !! Nutrient limitation |
---|
370 | !! jliebig : Liebig nutrient uptake switch |
---|
371 | !! xnln : half-sat constant for DIN uptake by non-diatoms |
---|
372 | !! xnld : half-sat constant for DIN uptake by diatoms |
---|
373 | !! xsl : half-sat constant for Si uptake by diatoms |
---|
374 | !! xfld : half-sat constant for Fe uptake by diatoms |
---|
375 | !! xfln : half-sat constant for Fe uptake by non-datoms |
---|
376 | !! |
---|
377 | !! Grazing |
---|
378 | !! xgmi : microzoo maximum growth rate |
---|
379 | !! xgme : mesozoo maximum growth rate |
---|
380 | !! xkmi : microzoo grazing half-sat parameter |
---|
381 | !! xkme : mesozoo grazing half-sat parameter |
---|
382 | !! xphi : micro/mesozoo grazing inefficiency |
---|
383 | !! xbetan : micro/mesozoo N assimilation efficiency |
---|
384 | !! xbetac : micro/mesozoo C assimilation efficiency |
---|
385 | !! xkc : micro/mesozoo net C growth efficiency |
---|
386 | !! xpmipn : grazing preference of microzoo for non-diatoms |
---|
387 | !! xpmid : grazing preference of microzoo for diatoms |
---|
388 | !! xpmepn : grazing preference of mesozoo for non-diatoms |
---|
389 | !! xpmepd : grazing preference of mesozoo for diatoms |
---|
390 | !! xpmezmi : grazing preference of mesozoo for microzoo |
---|
391 | !! xpmed : grazing preference of mesozoo for detritus |
---|
392 | !! |
---|
393 | !! Metabolic losses |
---|
394 | !! xmetapn : non-diatom metabolic loss rate |
---|
395 | !! xmetapd : diatom metabolic loss rate |
---|
396 | !! xmetazmi : microzoo metabolic loss rate |
---|
397 | !! xmetazme : mesozoo metabolic loss rate |
---|
398 | !! |
---|
399 | !! Mortality/Remineralisation |
---|
400 | !! jmpn : non-diatom mortality functional form |
---|
401 | !! xmpn : non-diatom mortality rate |
---|
402 | !! xkphn : non-diatom mortality half-sat constant |
---|
403 | !! jmpd : diatom mortality functional form |
---|
404 | !! xmpd : diatom mortality rate |
---|
405 | !! xkphd : diatom mortality half-sat constant |
---|
406 | !! jmzmi : microzoo mortality functional form |
---|
407 | !! xmzmi : microzoo mortality rate |
---|
408 | !! xkzmi : microzoo mortality half-sat constant |
---|
409 | !! jmzme : mesozoo mortality functional form |
---|
410 | !! xmzme : mesozoo mortality rate |
---|
411 | !! xkzme : mesozoo mortality half-sat constant |
---|
412 | !! |
---|
413 | !! Remineralisation |
---|
414 | !! jmd : detritus T-dependent remineralisation switch |
---|
415 | !! jsfd : accelerate seafloor detritus remin. switch |
---|
416 | !! xmd : detrital nitrogen remineralisation rate |
---|
417 | !! xmdc : detrital carbon remineralisation rate |
---|
418 | !! |
---|
419 | !! Stochiometric ratios |
---|
420 | !! xthetapn : non-diatom C:N ratio |
---|
421 | !! xthetapd : diatom C:N ratio |
---|
422 | !! xthetazmi : microzoo C:N ratio |
---|
423 | !! xthetazme : mesozoo C:N ratio |
---|
424 | !! xthetad : detritus C:N ratio |
---|
425 | !! xrfn : phytoplankton Fe:N ratio |
---|
426 | !! xrsn : diatom Si:N ratio (*NOT* used) |
---|
427 | !! |
---|
428 | !! Iron parameters |
---|
429 | !! jiron : iron scavenging submodel switch |
---|
430 | !! xfe_mass : iron atomic mass |
---|
431 | !! xfe_sol : aeolian iron solubility |
---|
432 | !! xfe_sed : sediment iron input |
---|
433 | !! xLgT : total ligand concentration (umol/m3) |
---|
434 | !! xk_FeL : dissociation constant for (Fe + L) |
---|
435 | !! xk_sc_Fe : scavenging rate of "free" iron |
---|
436 | !! |
---|
437 | !! Fast-sinking detritus parameters |
---|
438 | !! jexport : fast detritus remineralisation switch |
---|
439 | !! jfdfate : fate of fast detritus at seafloor switch |
---|
440 | !! jrratio : rain ratio switch |
---|
441 | !! jocalccd : CCD switch |
---|
442 | !! xridg_r0 : Ridgwell rain ratio coefficient |
---|
443 | !! xfdfrac1 : fast-sinking fraction of diatom nat. mort. losses |
---|
444 | !! xfdfrac2 : fast-sinking fraction of meszooplankton mort. losses |
---|
445 | !! xfdfrac3 : fast-sinking fraction of diatom silicon grazing losses |
---|
446 | !! xcaco3a : polar (high latitude) CaCO3 fraction |
---|
447 | !! xcaco3b : equatorial (low latitude) CaCO3 fraction |
---|
448 | !! xmassc : organic C mass:mole ratio, C106 H175 O40 N16 P1 |
---|
449 | !! xmassca : calcium carbonate mass:mole ratio, CaCO3 |
---|
450 | !! xmasssi : biogenic silicon mass:mole ratio, (H2SiO3)n |
---|
451 | !! xprotca : calcium carbonate protection ratio |
---|
452 | !! xprotsi : biogenic silicon protection ratio |
---|
453 | !! xfastc : organic C remineralisation length scale |
---|
454 | !! xfastca : calcium carbonate dissolution length scale |
---|
455 | !! xfastsi : biogenic silicon dissolution length scale |
---|
456 | !! |
---|
457 | !! Benthic |
---|
458 | !! jorgben : does organic detritus go to the benthos? |
---|
459 | !! jinorgben : does inorganic detritus go to the benthos? |
---|
460 | !! xsedn : organic nitrogen sediment remineralisation rate |
---|
461 | !! xsedfe : organic iron sediment remineralisation rate |
---|
462 | !! xsedsi : inorganic silicon sediment dissolution rate |
---|
463 | !! xsedc : organic carbon sediment remineralisation rate |
---|
464 | !! xsedca : inorganic carbon sediment dissolution rate |
---|
465 | !! xburial : burial rate of seafloor detritus |
---|
466 | !! |
---|
467 | !! Riverine inputs |
---|
468 | !! jriver_n : riverine N input? |
---|
469 | !! jriver_si : riverine Si input? |
---|
470 | !! jriver_c : riverine C input? |
---|
471 | !! jriver_alk : riverine alkalinity input? |
---|
472 | !! jriver_dep : depth of riverine input? |
---|
473 | !! |
---|
474 | !! Miscellaneous |
---|
475 | !! xsdiss : diatom frustule dissolution rate |
---|
476 | !! |
---|
477 | !! Gravitational sinking |
---|
478 | !! vsed : detritus gravitational sinking rate |
---|
479 | !! xhr : coeff for Martin's remineralisation profile |
---|
480 | !! |
---|
481 | !! Additional parameters |
---|
482 | !! sedlam : time coeff of POC in sediments |
---|
483 | !! sedlostpoc : sediment geol loss for POC |
---|
484 | !! jpkb : vertical layer for diagnostic of the vertical flux |
---|
485 | !! NOTE that in LOBSTER it is a first vertical layers where |
---|
486 | !! biology is active |
---|
487 | !! |
---|
488 | !! UKESM1 - new diagnostics !! Jpalm |
---|
489 | !! jdms : include dms diagnostics |
---|
490 | !! |
---|
491 | !! |
---|
492 | !! |
---|
493 | |
---|
494 | IF(lwp) THEN |
---|
495 | !! |
---|
496 | !! AXY (08/11/13): compilation key notification |
---|
497 | WRITE(numout,*) '=== Compilation keys' |
---|
498 | #if defined key_roam |
---|
499 | WRITE(numout,*) & |
---|
500 | & ' key_roam = ACTIVE' |
---|
501 | #else |
---|
502 | WRITE(numout,*) & |
---|
503 | & ' key_roam = INACTIVE' |
---|
504 | #endif |
---|
505 | #if defined key_axy_carbchem |
---|
506 | WRITE(numout,*) & |
---|
507 | & ' key_axy_carbchem = ACTIVE' |
---|
508 | #else |
---|
509 | WRITE(numout,*) & |
---|
510 | & ' key_axy_carbchem = INACTIVE' |
---|
511 | #endif |
---|
512 | #if defined key_bs_axy_zforce |
---|
513 | WRITE(numout,*) & |
---|
514 | & ' key_bs_axy_zforce = ACTIVE' |
---|
515 | #else |
---|
516 | WRITE(numout,*) & |
---|
517 | & ' key_bs_axy_zforce = INACTIVE' |
---|
518 | #endif |
---|
519 | #if defined key_bs_axy_yrlen |
---|
520 | WRITE(numout,*) & |
---|
521 | & ' key_bs_axy_yrlen = ACTIVE' |
---|
522 | #else |
---|
523 | WRITE(numout,*) & |
---|
524 | & ' key_bs_axy_yrlen = INACTIVE' |
---|
525 | #endif |
---|
526 | #if defined key_deep_fe_fix |
---|
527 | WRITE(numout,*) & |
---|
528 | & ' key_deep_fe_fix = ACTIVE' |
---|
529 | #else |
---|
530 | WRITE(numout,*) & |
---|
531 | & ' key_deep_fe_fix = INACTIVE' |
---|
532 | #endif |
---|
533 | #if defined key_axy_nancheck |
---|
534 | WRITE(numout,*) & |
---|
535 | & ' key_axy_nancheck = ACTIVE' |
---|
536 | #else |
---|
537 | WRITE(numout,*) & |
---|
538 | & ' key_axy_nancheck = INACTIVE' |
---|
539 | #endif |
---|
540 | # if defined key_axy_pi_co2 |
---|
541 | WRITE(numout,*) & |
---|
542 | & ' key_axy_pi_co2 = ACTIVE' |
---|
543 | #else |
---|
544 | WRITE(numout,*) & |
---|
545 | & ' key_axy_pi_co2 = INACTIVE' |
---|
546 | # endif |
---|
547 | WRITE(numout,*) ' ' |
---|
548 | |
---|
549 | WRITE(numout,*) 'natbio' |
---|
550 | WRITE(numout,*) ' ' |
---|
551 | !! |
---|
552 | !! Primary production and chl related quantities |
---|
553 | WRITE(numout,*) '=== Primary production' |
---|
554 | WRITE(numout,*) & |
---|
555 | & ' conversion factor from gC to mmolN, xxi =', xxi |
---|
556 | WRITE(numout,*) & |
---|
557 | & ' Chl-a specific initial slope of P-I curve for non-diatoms, xaln = ', xaln |
---|
558 | WRITE(numout,*) & |
---|
559 | & ' Chl-a specific initial slope of P-I curve for diatoms, xald = ', xald |
---|
560 | if (jphy.eq.1) then |
---|
561 | WRITE(numout,*) & |
---|
562 | & ' phytoplankton growth is *temperature-dependent* jphy = ', jphy |
---|
563 | elseif (jphy.eq.0) then |
---|
564 | WRITE(numout,*) & |
---|
565 | & ' phytoplankton growth is *temperature-independent* jphy = ', jphy |
---|
566 | endif |
---|
567 | WRITE(numout,*) & |
---|
568 | & ' maximum growth rate for non-diatoms, xvpn = ', xvpn |
---|
569 | WRITE(numout,*) & |
---|
570 | & ' maximum growth rate for diatoms, xvpn = ', xvpd |
---|
571 | WRITE(numout,*) & |
---|
572 | & ' maximum Chl to C ratio for non-diatoms, xthetam = ', xthetam |
---|
573 | WRITE(numout,*) & |
---|
574 | & ' maximum Chl to C ratio for diatoms, xthetamd = ', xthetamd |
---|
575 | !! |
---|
576 | !! Diatom silicon parameters |
---|
577 | WRITE(numout,*) '=== Diatom silicon parameters' |
---|
578 | WRITE(numout,*) & |
---|
579 | & ' minimum diatom Si:N ratio, xsin0 = ', xsin0 |
---|
580 | WRITE(numout,*) & |
---|
581 | & ' minimum diatom N:Si ratio, xnsi0 = ', xnsi0 |
---|
582 | WRITE(numout,*) & |
---|
583 | & ' hypothetical growth ratio at infinite Si:N ratio, xuif = ', xuif |
---|
584 | !! |
---|
585 | !! Nutrient limitation |
---|
586 | WRITE(numout,*) '=== Nutrient limitation' |
---|
587 | if (jliebig.eq.1) then |
---|
588 | WRITE(numout,*) & |
---|
589 | & ' nutrient uptake is a Liebig Law (= most limiting) function jliebig = ', jliebig |
---|
590 | elseif (jliebig.eq.0) then |
---|
591 | WRITE(numout,*) & |
---|
592 | & ' nutrient uptake is a multiplicative function jliebig = ', jliebig |
---|
593 | endif |
---|
594 | WRITE(numout,*) & |
---|
595 | & ' half-sat constant for DIN uptake by non-diatoms, xnln = ', xnln |
---|
596 | WRITE(numout,*) & |
---|
597 | & ' half-sat constant for DIN uptake by diatoms, xnld = ', xnld |
---|
598 | WRITE(numout,*) & |
---|
599 | & ' half-sat constant for Si uptake by diatoms, xsld = ', xsld |
---|
600 | WRITE(numout,*) & |
---|
601 | & ' half-sat constant for Fe uptake by non-diatoms, xfln = ', xfln |
---|
602 | WRITE(numout,*) & |
---|
603 | & ' half-sat constant for Fe uptake by diatoms, xfld = ', xfld |
---|
604 | !! |
---|
605 | !! Grazing |
---|
606 | WRITE(numout,*) '=== Zooplankton grazing' |
---|
607 | WRITE(numout,*) & |
---|
608 | & ' microzoo maximum growth rate, xgmi = ', xgmi |
---|
609 | WRITE(numout,*) & |
---|
610 | & ' mesozoo maximum growth rate, xgme = ', xgme |
---|
611 | WRITE(numout,*) & |
---|
612 | & ' microzoo grazing half-sat parameter, xkmi = ', xkmi |
---|
613 | WRITE(numout,*) & |
---|
614 | & ' mesozoo grazing half-sat parameter, xkme = ', xkme |
---|
615 | WRITE(numout,*) & |
---|
616 | & ' micro/mesozoo grazing inefficiency, xphi = ', xphi |
---|
617 | WRITE(numout,*) & |
---|
618 | & ' micro/mesozoo N assimilation efficiency, xbetan = ', xbetan |
---|
619 | WRITE(numout,*) & |
---|
620 | & ' micro/mesozoo C assimilation efficiency, xbetac = ', xbetan |
---|
621 | WRITE(numout,*) & |
---|
622 | & ' micro/mesozoo net C growth efficiency, xkc = ', xkc |
---|
623 | WRITE(numout,*) & |
---|
624 | & ' grazing preference of microzoo for non-diatoms, xpmipn = ', xpmipn |
---|
625 | WRITE(numout,*) & |
---|
626 | & ' grazing preference of microzoo for detritus, xpmid = ', xpmid |
---|
627 | WRITE(numout,*) & |
---|
628 | & ' grazing preference of mesozoo for non-diatoms, xpmepn = ', xpmepn |
---|
629 | WRITE(numout,*) & |
---|
630 | & ' grazing preference of mesozoo for diatoms, xpmepd = ', xpmepd |
---|
631 | WRITE(numout,*) & |
---|
632 | & ' grazing preference of mesozoo for microzoo, xpmezmi = ', xpmezmi |
---|
633 | WRITE(numout,*) & |
---|
634 | & ' grazing preference of mesozoo for detritus, xpmed = ', xpmed |
---|
635 | !! |
---|
636 | !! Metabolic losses |
---|
637 | WRITE(numout,*) '=== Metabolic losses' |
---|
638 | WRITE(numout,*) & |
---|
639 | & ' non-diatom metabolic loss rate, xmetapn = ', xmetapn |
---|
640 | WRITE(numout,*) & |
---|
641 | & ' diatom metabolic loss rate, xmetapd = ', xmetapd |
---|
642 | WRITE(numout,*) & |
---|
643 | & ' microzoo metabolic loss rate, xmetazmi = ', xmetazmi |
---|
644 | WRITE(numout,*) & |
---|
645 | & ' mesozoo metabolic loss rate, xmetazme = ', xmetazme |
---|
646 | !! |
---|
647 | !! Mortality losses |
---|
648 | WRITE(numout,*) '=== Mortality losses' |
---|
649 | if (jmpn.eq.1) then |
---|
650 | WRITE(numout,*) & |
---|
651 | & ' non-diatom mortality functional form, LINEAR jmpn = ', jmpn |
---|
652 | elseif (jmpn.eq.2) then |
---|
653 | WRITE(numout,*) & |
---|
654 | & ' non-diatom mortality functional form, QUADRATIC jmpn = ', jmpn |
---|
655 | elseif (jmpn.eq.3) then |
---|
656 | WRITE(numout,*) & |
---|
657 | & ' non-diatom mortality functional form, HYPERBOLIC jmpn = ', jmpn |
---|
658 | elseif (jmpn.eq.4) then |
---|
659 | WRITE(numout,*) & |
---|
660 | & ' non-diatom mortality functional form, SIGMOID jmpn = ', jmpn |
---|
661 | endif |
---|
662 | WRITE(numout,*) & |
---|
663 | & ' non-diatom mortality rate, xmpn = ', xmpn |
---|
664 | WRITE(numout,*) & |
---|
665 | & ' non-diatom mortality half-sat constant xkphn = ', xkphn |
---|
666 | if (jmpd.eq.1) then |
---|
667 | WRITE(numout,*) & |
---|
668 | & ' diatom mortality functional form, LINEAR jmpd = ', jmpd |
---|
669 | elseif (jmpd.eq.2) then |
---|
670 | WRITE(numout,*) & |
---|
671 | & ' diatom mortality functional form, QUADRATIC jmpd = ', jmpd |
---|
672 | elseif (jmpd.eq.3) then |
---|
673 | WRITE(numout,*) & |
---|
674 | & ' diatom mortality functional form, HYPERBOLIC jmpd = ', jmpd |
---|
675 | elseif (jmpd.eq.4) then |
---|
676 | WRITE(numout,*) & |
---|
677 | & ' diatom mortality functional form, SIGMOID jmpd = ', jmpd |
---|
678 | endif |
---|
679 | WRITE(numout,*) & |
---|
680 | & ' diatom mortality rate, xmpd = ', xmpd |
---|
681 | WRITE(numout,*) & |
---|
682 | & ' diatom mortality half-sat constant xkphd = ', xkphd |
---|
683 | if (jmzmi.eq.1) then |
---|
684 | WRITE(numout,*) & |
---|
685 | & ' microzoo mortality functional form, LINEAR jmzmi = ', jmzmi |
---|
686 | elseif (jmzmi.eq.2) then |
---|
687 | WRITE(numout,*) & |
---|
688 | & ' microzoo mortality functional form, QUADRATIC jmzmi = ', jmzmi |
---|
689 | elseif (jmzmi.eq.3) then |
---|
690 | WRITE(numout,*) & |
---|
691 | & ' microzoo mortality functional form, HYPERBOLIC jmzmi = ', jmzmi |
---|
692 | elseif (jmzmi.eq.4) then |
---|
693 | WRITE(numout,*) & |
---|
694 | & ' microzoo mortality functional form, SIGMOID jmzmi = ', jmzmi |
---|
695 | endif |
---|
696 | WRITE(numout,*) & |
---|
697 | & ' microzoo mortality rate, xmzmi = ', xmzmi |
---|
698 | WRITE(numout,*) & |
---|
699 | & ' mesozoo mortality half-sat constant, xkzmi = ', xkzmi |
---|
700 | if (jmzme.eq.1) then |
---|
701 | WRITE(numout,*) & |
---|
702 | & ' mesozoo mortality functional form, LINEAR jmzme = ', jmzme |
---|
703 | elseif (jmzme.eq.2) then |
---|
704 | WRITE(numout,*) & |
---|
705 | & ' mesozoo mortality functional form, QUADRATIC jmzme = ', jmzme |
---|
706 | elseif (jmzme.eq.3) then |
---|
707 | WRITE(numout,*) & |
---|
708 | & ' mesozoo mortality functional form, HYPERBOLIC jmzme = ', jmzme |
---|
709 | elseif (jmzme.eq.4) then |
---|
710 | WRITE(numout,*) & |
---|
711 | & ' mesozoo mortality functional form, SIGMOID jmzme = ', jmzme |
---|
712 | endif |
---|
713 | WRITE(numout,*) & |
---|
714 | & ' mesozoo mortality rate, xmzme = ', xmzme |
---|
715 | WRITE(numout,*) & |
---|
716 | & ' mesozoo mortality half-sat constant, xkzme = ', xkzme |
---|
717 | !! |
---|
718 | !! Remineralisation |
---|
719 | WRITE(numout,*) '=== Remineralisation' |
---|
720 | if (jmd.eq.1) then |
---|
721 | WRITE(numout,*) & |
---|
722 | & ' detritus remineralisation is *temperature-dependent* jmd = ', jmd |
---|
723 | elseif (jmd.eq.0) then |
---|
724 | WRITE(numout,*) & |
---|
725 | & ' detritus remineralisation is *temperature-independent* jmd = ', jmd |
---|
726 | endif |
---|
727 | if (jsfd.eq.1) then |
---|
728 | WRITE(numout,*) & |
---|
729 | & ' detritus seafloor remineralisation is *accelerated* jsfd = ', jsfd |
---|
730 | else |
---|
731 | WRITE(numout,*) & |
---|
732 | & ' detritus seafloor remineralisation occurs at same rate jsfd = ', jsfd |
---|
733 | endif |
---|
734 | WRITE(numout,*) & |
---|
735 | & ' detrital nitrogen remineralisation rate, xmd = ', xmd |
---|
736 | WRITE(numout,*) & |
---|
737 | & ' detrital carbon remineralisation rate, xmdc = ', xmdc |
---|
738 | !! |
---|
739 | !! Stochiometric ratios |
---|
740 | WRITE(numout,*) '=== Stoichiometric ratios' |
---|
741 | WRITE(numout,*) & |
---|
742 | & ' non-diatom C:N ratio, xthetapn = ', xthetapn |
---|
743 | WRITE(numout,*) & |
---|
744 | & ' diatom C:N ratio, xthetapd = ', xthetapd |
---|
745 | WRITE(numout,*) & |
---|
746 | & ' microzoo C:N ratio, xthetazmi = ', xthetazmi |
---|
747 | WRITE(numout,*) & |
---|
748 | & ' mesozoo C:N ratio, xthetazme = ', xthetazme |
---|
749 | WRITE(numout,*) & |
---|
750 | & ' detritus C:N ratio, xthetad = ', xthetad |
---|
751 | WRITE(numout,*) & |
---|
752 | & ' phytoplankton Fe:N ratio, xrfn = ', xrfn |
---|
753 | WRITE(numout,*) & |
---|
754 | & ' diatom Si:N ratio, xrsn = ', xrsn |
---|
755 | !! |
---|
756 | !! Iron parameters |
---|
757 | WRITE(numout,*) '=== Iron parameters' |
---|
758 | if (jiron.eq.1) then |
---|
759 | WRITE(numout,*) & |
---|
760 | & ' Dutkiewicz et al. (2005) iron scavenging jiron = ', jiron |
---|
761 | elseif (jiron.eq.2) then |
---|
762 | WRITE(numout,*) & |
---|
763 | & ' Moore et al. (2004) iron scavenging jiron = ', jiron |
---|
764 | elseif (jiron.eq.3) then |
---|
765 | WRITE(numout,*) & |
---|
766 | & ' Moore et al. (2008) iron scavenging jiron = ', jiron |
---|
767 | elseif (jiron.eq.4) then |
---|
768 | WRITE(numout,*) & |
---|
769 | & ' Galbraith et al. (2010) iron scavenging jiron = ', jiron |
---|
770 | else |
---|
771 | WRITE(numout,*) & |
---|
772 | & ' There is **no** iron scavenging jiron = ', jiron |
---|
773 | endif |
---|
774 | WRITE(numout,*) & |
---|
775 | & ' iron atomic mass, xfe_mass = ', xfe_mass |
---|
776 | WRITE(numout,*) & |
---|
777 | & ' aeolian iron solubility, xfe_sol = ', xfe_sol |
---|
778 | WRITE(numout,*) & |
---|
779 | & ' sediment iron input, xfe_sed = ', xfe_sed |
---|
780 | WRITE(numout,*) & |
---|
781 | & ' total ligand concentration (umol/m3), xLgT = ', xLgT |
---|
782 | WRITE(numout,*) & |
---|
783 | & ' dissociation constant for (Fe + L), xk_FeL = ', xk_FeL |
---|
784 | WRITE(numout,*) & |
---|
785 | & ' scavenging rate for free iron, xk_sc_Fe = ', xk_sc_Fe |
---|
786 | !! |
---|
787 | !! Fast-sinking detritus parameters |
---|
788 | WRITE(numout,*) '=== Fast-sinking detritus' |
---|
789 | if (jexport.eq.1) then |
---|
790 | WRITE(numout,*) & |
---|
791 | & ' fast-detritus remin. uses Dunne et al. (2007; ballast) jexport = ', jexport |
---|
792 | elseif (jexport.eq.2) then |
---|
793 | WRITE(numout,*) & |
---|
794 | & ' fast-detritus remin. uses Martin et al. (1987) jexport = ', jexport |
---|
795 | elseif (jexport.eq.2) then |
---|
796 | WRITE(numout,*) & |
---|
797 | & ' fast-detritus remin. uses Henson et al. (2011) jexport = ', jexport |
---|
798 | endif |
---|
799 | if (jfdfate.eq.1) then |
---|
800 | WRITE(numout,*) & |
---|
801 | & ' fast-detritus reaching seafloor becomes slow-detritus jfdfate = ', jfdfate |
---|
802 | elseif (jfdfate.eq.0) then |
---|
803 | WRITE(numout,*) & |
---|
804 | & ' fast-detritus reaching seafloor instantly remineralised jfdfate = ', jfdfate |
---|
805 | endif |
---|
806 | #if defined key_roam |
---|
807 | if (jrratio.eq.0) then |
---|
808 | WRITE(numout,*) & |
---|
809 | & ' Dunne et al. (2005) rain ratio submodel jrratio = ', jrratio |
---|
810 | elseif (jrratio.eq.1) then |
---|
811 | WRITE(numout,*) & |
---|
812 | & ' Ridgwell et al. (2007) rain ratio submodel (surface omega) jrratio = ', jrratio |
---|
813 | elseif (jrratio.eq.2) then |
---|
814 | WRITE(numout,*) & |
---|
815 | & ' Ridgwell et al. (2007) rain ratio submodel (3D omega) jrratio = ', jrratio |
---|
816 | endif |
---|
817 | #else |
---|
818 | jrratio = 0 |
---|
819 | WRITE(numout,*) & |
---|
820 | & ' Dunne et al. (2005) rain ratio submodel jrratio = ', jrratio |
---|
821 | #endif |
---|
822 | #if defined key_roam |
---|
823 | if (jocalccd.eq.0) then |
---|
824 | WRITE(numout,*) & |
---|
825 | & ' Default, fixed CCD used jocalccd = ', jocalccd |
---|
826 | elseif (jocalccd.eq.1) then |
---|
827 | WRITE(numout,*) & |
---|
828 | & ' Calculated, dynamic CCD used jocalccd = ', jocalccd |
---|
829 | endif |
---|
830 | #else |
---|
831 | jocalccd = 0 |
---|
832 | WRITE(numout,*) & |
---|
833 | & ' Default, fixed CCD used jocalccd = ', jocalccd |
---|
834 | #endif |
---|
835 | WRITE(numout,*) & |
---|
836 | & ' Ridgwell rain ratio coefficient, xridg_r0 = ', xridg_r0 |
---|
837 | WRITE(numout,*) & |
---|
838 | & ' fast-sinking fraction of diatom nat. mort. losses, xfdfrac1 = ', xfdfrac1 |
---|
839 | WRITE(numout,*) & |
---|
840 | & ' fast-sinking fraction of mesozooplankton mort. losses, xfdfrac2 = ', xfdfrac2 |
---|
841 | WRITE(numout,*) & |
---|
842 | & ' fast-sinking fraction of diatom silicon grazing losses, xfdfrac3 = ', xfdfrac3 |
---|
843 | WRITE(numout,*) & |
---|
844 | & ' polar (high latitude) CaCO3 fraction, xcaco3a = ', xcaco3a |
---|
845 | WRITE(numout,*) & |
---|
846 | & ' equatorial (low latitude) CaCO3 fraction, xcaco3b = ', xcaco3b |
---|
847 | WRITE(numout,*) & |
---|
848 | & ' organic C mass:mole ratio, C106 H175 O40 N16 P1, xmassc = ', xmassc |
---|
849 | WRITE(numout,*) & |
---|
850 | & ' calcium carbonate mass:mole ratio, CaCO3, xmassca = ', xmassca |
---|
851 | WRITE(numout,*) & |
---|
852 | & ' biogenic silicon mass:mole ratio, (H2SiO3)n, xmasssi = ', xmasssi |
---|
853 | WRITE(numout,*) & |
---|
854 | & ' calcium carbonate protection ratio, xprotca = ', xprotca |
---|
855 | WRITE(numout,*) & |
---|
856 | & ' biogenic silicon protection ratio, xprotsi = ', xprotsi |
---|
857 | WRITE(numout,*) & |
---|
858 | & ' organic C remineralisation length scale, xfastc = ', xfastc |
---|
859 | WRITE(numout,*) & |
---|
860 | & ' calcium carbonate dissolution length scale, xfastca = ', xfastca |
---|
861 | WRITE(numout,*) & |
---|
862 | & ' biogenic silicon dissolution length scale, xfastsi = ', xfastsi |
---|
863 | !! |
---|
864 | !! Benthos parameters |
---|
865 | WRITE(numout,*) '=== Benthos parameters' |
---|
866 | WRITE(numout,*) & |
---|
867 | & ' does organic detritus go to the benthos?, jorgben = ', jorgben |
---|
868 | WRITE(numout,*) & |
---|
869 | & ' does inorganic detritus go to the benthos?, jinorgben = ', jinorgben |
---|
870 | !! |
---|
871 | !! Some checks on parameters related to benthos parameters |
---|
872 | if (jorgben.eq.1 .and. jsfd.eq.1) then |
---|
873 | !! slow detritus going to benthos at an accelerated rate |
---|
874 | WRITE(numout,*) ' === WARNING! ===' |
---|
875 | WRITE(numout,*) ' jsfd *and* jorgben are active - please check that you wish this' |
---|
876 | WRITE(numout,*) ' === WARNING! ===' |
---|
877 | endif |
---|
878 | if (jorgben.eq.1 .and. jfdfate.eq.1) then |
---|
879 | !! fast detritus going to benthos but via slow detritus |
---|
880 | WRITE(numout,*) ' === WARNING! ===' |
---|
881 | WRITE(numout,*) ' jfdfate *and* jorgben are active - please check that you wish this' |
---|
882 | WRITE(numout,*) ' === WARNING! ===' |
---|
883 | endif |
---|
884 | if (jorgben.eq.0 .and. jinorgben.eq.1) then |
---|
885 | !! inorganic fast detritus going to benthos but organic fast detritus is not |
---|
886 | WRITE(numout,*) ' === WARNING! ===' |
---|
887 | WRITE(numout,*) ' jinorgben is active but jorgben is not - please check that you wish this' |
---|
888 | WRITE(numout,*) ' === WARNING! ===' |
---|
889 | endif |
---|
890 | WRITE(numout,*) & |
---|
891 | & ' organic nitrogen sediment remineralisation rate, xsedn = ', xsedn |
---|
892 | WRITE(numout,*) & |
---|
893 | & ' organic iron sediment remineralisation rate, xsedfe = ', xsedfe |
---|
894 | WRITE(numout,*) & |
---|
895 | & ' inorganic silicon sediment remineralisation rate, xsedsi = ', xsedsi |
---|
896 | WRITE(numout,*) & |
---|
897 | & ' organic carbon sediment remineralisation rate, xsedc = ', xsedc |
---|
898 | WRITE(numout,*) & |
---|
899 | & ' inorganic carbon sediment remineralisation rate, xsedca = ', xsedca |
---|
900 | WRITE(numout,*) & |
---|
901 | & ' burial rate of seafloor detritus, xburial = ', xburial |
---|
902 | !! |
---|
903 | !! Riverine inputs |
---|
904 | WRITE(numout,*) '=== Riverine inputs' |
---|
905 | if (jriver_n.eq.0) then |
---|
906 | WRITE(numout,*) & |
---|
907 | & ' *no* riverine N input, jriver_n = ', jriver_n |
---|
908 | elseif (jriver_n.eq.1) then |
---|
909 | WRITE(numout,*) & |
---|
910 | & ' riverine N concentrations specified, jriver_n = ', jriver_n |
---|
911 | elseif (jriver_n.eq.2) then |
---|
912 | WRITE(numout,*) & |
---|
913 | & ' riverine N inputs specified, jriver_n = ', jriver_n |
---|
914 | endif |
---|
915 | if (jriver_si.eq.0) then |
---|
916 | WRITE(numout,*) & |
---|
917 | & ' *no* riverine Si input, jriver_si = ', jriver_si |
---|
918 | elseif (jriver_si.eq.1) then |
---|
919 | WRITE(numout,*) & |
---|
920 | & ' riverine Si concentrations specified, jriver_si = ', jriver_si |
---|
921 | elseif (jriver_si.eq.2) then |
---|
922 | WRITE(numout,*) & |
---|
923 | & ' riverine Si inputs specified, jriver_si = ', jriver_si |
---|
924 | endif |
---|
925 | if (jriver_c.eq.0) then |
---|
926 | WRITE(numout,*) & |
---|
927 | & ' *no* riverine C input, jriver_c = ', jriver_c |
---|
928 | elseif (jriver_c.eq.1) then |
---|
929 | WRITE(numout,*) & |
---|
930 | & ' riverine C concentrations specified, jriver_c = ', jriver_c |
---|
931 | elseif (jriver_c.eq.2) then |
---|
932 | WRITE(numout,*) & |
---|
933 | & ' riverine C inputs specified, jriver_c = ', jriver_c |
---|
934 | endif |
---|
935 | if (jriver_alk.eq.0) then |
---|
936 | WRITE(numout,*) & |
---|
937 | & ' *no* riverine alkalinity input, jriver_alk = ', jriver_alk |
---|
938 | elseif (jriver_alk.eq.1) then |
---|
939 | WRITE(numout,*) & |
---|
940 | & ' riverine alkalinity concentrations specified, jriver_alk = ', jriver_alk |
---|
941 | elseif (jriver_alk.eq.2) then |
---|
942 | WRITE(numout,*) & |
---|
943 | & ' riverine alkalinity inputs specified, jriver_alk = ', jriver_alk |
---|
944 | endif |
---|
945 | !! AXY (19/07/12): prevent (gross) stupidity on part of user |
---|
946 | if (jriver_dep.lt.1.or.jriver_dep.ge.jpk) then |
---|
947 | jriver_dep = 1 |
---|
948 | endif |
---|
949 | WRITE(numout,*) & |
---|
950 | & ' riverine input applied to down to depth k = ... jriver_dep = ', jriver_dep |
---|
951 | !! |
---|
952 | !! Miscellaneous |
---|
953 | WRITE(numout,*) '=== Miscellaneous' |
---|
954 | WRITE(numout,*) & |
---|
955 | & ' diatom frustule dissolution rate, xsdiss = ', xsdiss |
---|
956 | !! |
---|
957 | !! Gravitational sinking |
---|
958 | WRITE(numout,*) '=== Gravitational sinking' |
---|
959 | WRITE(numout,*) & |
---|
960 | & ' detritus gravitational sinking rate, vsed = ', vsed |
---|
961 | WRITE(numout,*) & |
---|
962 | & ' coefficient for Martin et al. (1987) remineralisation, xhr = ', xhr |
---|
963 | !! |
---|
964 | !! Non-Medusa parameters |
---|
965 | WRITE(numout,*) '=== Non-Medusa parameters' |
---|
966 | WRITE(numout,*) & |
---|
967 | & ' time coeff of POC in sediments, sedlam = ', sedlam |
---|
968 | WRITE(numout,*) & |
---|
969 | & ' Sediment geol loss for POC, sedlostpoc = ', sedlostpoc |
---|
970 | WRITE(numout,*) & |
---|
971 | & ' Vert layer for diagnostic of vertical flux, jpkp = ', jpkb |
---|
972 | !! |
---|
973 | !! UKESM1 - new diagnostics !! Jpalm |
---|
974 | WRITE(numout,*) '=== UKESM1-related parameters' |
---|
975 | WRITE(numout,*) & |
---|
976 | & ' include DMS diagnostic?, jdms = ', jdms |
---|
977 | !! |
---|
978 | ENDIF |
---|
979 | !! |
---|
980 | !! Key depth positions (with thanks to Andrew Coward for bug-fixing this bit) |
---|
981 | DO jk = 1,jpk |
---|
982 | !! level thickness |
---|
983 | fthk = e3t_1d(jk) |
---|
984 | !! level depth (top of level) |
---|
985 | fdep = gdepw_1d(jk) |
---|
986 | !! level depth (bottom of level) |
---|
987 | fdep1 = fdep + fthk |
---|
988 | !! |
---|
989 | if (fdep.lt.100.0.AND.fdep1.gt.100.0) then ! 100 m |
---|
990 | i0100 = jk |
---|
991 | elseif (fdep.lt.150.0.AND.fdep1.gt.150.0) then ! 150 m (for BASIN) |
---|
992 | i0150 = jk |
---|
993 | elseif (fdep.lt.200.0.AND.fdep1.gt.200.0) then ! 200 m |
---|
994 | i0200 = jk |
---|
995 | elseif (fdep.lt.500.0.AND.fdep1.gt.500.0) then ! 500 m |
---|
996 | i0500 = jk |
---|
997 | elseif (fdep.lt.1000.0.AND.fdep1.gt.1000.0) then ! 1000 m |
---|
998 | i1000 = jk |
---|
999 | elseif (fdep1.lt.1100.0) then ! 1100 m (for Moore et al. sedimentary iron) |
---|
1000 | i1100 = jk |
---|
1001 | endif |
---|
1002 | enddo |
---|
1003 | !! |
---|
1004 | IF(lwp) THEN |
---|
1005 | WRITE(numout,*) '=== Position of key depths' |
---|
1006 | WRITE(numout,*) & |
---|
1007 | & ' jk position of 100 m horizon i0100 = ', i0100 |
---|
1008 | WRITE(numout,*) & |
---|
1009 | & ' jk position of 150 m horizon i0150 = ', i0150 |
---|
1010 | WRITE(numout,*) & |
---|
1011 | & ' jk position of 200 m horizon i0200 = ', i0200 |
---|
1012 | WRITE(numout,*) & |
---|
1013 | & ' jk position of 500 m horizon i0500 = ', i0500 |
---|
1014 | WRITE(numout,*) & |
---|
1015 | & ' jk position of 1000 m horizon i1000 = ', i1000 |
---|
1016 | WRITE(numout,*) & |
---|
1017 | & ' jk position of 1100 m horizon [*] i1100 = ', i1100 |
---|
1018 | WRITE(numout,*) 'Got here ' , SIZE(friver_dep) |
---|
1019 | CALL flush(numout) |
---|
1020 | ENDIF |
---|
1021 | |
---|
1022 | #if defined key_roam |
---|
1023 | |
---|
1024 | ! 1.4b namelist natroam : ROAM parameters |
---|
1025 | ! --------------------------------------- |
---|
1026 | |
---|
1027 | xthetaphy = 0. |
---|
1028 | xthetazoo = 0. |
---|
1029 | xthetanit = 0. |
---|
1030 | xthetarem = 0. |
---|
1031 | xo2min = 0. |
---|
1032 | |
---|
1033 | !READ(numnatm,natroam) |
---|
1034 | ! Namelist natbio |
---|
1035 | ! ------------------- |
---|
1036 | REWIND( numnatp_ref ) ! Namelist nampisdia in reference namelist : Pisces diagnostics |
---|
1037 | READ ( numnatp_ref, natbio, IOSTAT = ios, ERR = 901) |
---|
1038 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in reference namelist', lwp ) |
---|
1039 | |
---|
1040 | REWIND( numnatp_cfg ) ! Namelist nampisdia in configuration namelist : Pisces diagnostics |
---|
1041 | READ ( numnatp_cfg, natbio, IOSTAT = ios, ERR = 902 ) |
---|
1042 | 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in configuration namelist', lwp ) |
---|
1043 | IF(lwm) WRITE ( numonp, natbio ) |
---|
1044 | |
---|
1045 | !! ROAM carbon, alkalinity and oxygen cycle parameters |
---|
1046 | !! xthetaphy : oxygen evolution/consumption by phytoplankton |
---|
1047 | !! xthetazoo : oxygen consumption by zooplankton |
---|
1048 | !! xthetanit : oxygen consumption by nitrogen remineralisation |
---|
1049 | !! xthetarem : oxygen consumption by carbon remineralisation |
---|
1050 | !! xo2min : oxygen minimum concentration |
---|
1051 | |
---|
1052 | IF(lwp) THEN |
---|
1053 | WRITE(numout,*) 'natroam' |
---|
1054 | WRITE(numout,*) ' ' |
---|
1055 | !! |
---|
1056 | !! ROAM carbon, alkalinity and oxygen cycle parameters |
---|
1057 | WRITE(numout,*) '=== ROAM carbon, alkalinity and oxygen cycle parameters' |
---|
1058 | WRITE(numout,*) & |
---|
1059 | & ' oxygen evolution/consumption by phytoplankton xthetaphy = ', xthetaphy |
---|
1060 | WRITE(numout,*) & |
---|
1061 | & ' oxygen consumption by zooplankton xthetazoo = ', xthetazoo |
---|
1062 | WRITE(numout,*) & |
---|
1063 | & ' oxygen consumption by nitrogen remineralisation xthetanit = ', xthetanit |
---|
1064 | WRITE(numout,*) & |
---|
1065 | & ' oxygen consumption by carbon remineralisation xthetarem = ', xthetarem |
---|
1066 | WRITE(numout,*) & |
---|
1067 | & ' oxygen minimum concentration xo2min = ', xo2min |
---|
1068 | ENDIF |
---|
1069 | |
---|
1070 | #endif |
---|
1071 | |
---|
1072 | CALL flush(numout) |
---|
1073 | |
---|
1074 | ! 1.5 namelist natopt : parameters for optic |
---|
1075 | ! ------------------------------------------ |
---|
1076 | |
---|
1077 | xkg0 = 0. |
---|
1078 | xkr0 = 0. |
---|
1079 | xkgp = 0. |
---|
1080 | xkrp = 0. |
---|
1081 | xlg = 0. |
---|
1082 | xlr = 0. |
---|
1083 | rpig = 0. |
---|
1084 | |
---|
1085 | !READ(numnatm,natopt) |
---|
1086 | ! Namelist natopt |
---|
1087 | ! ------------------- |
---|
1088 | REWIND( numnatp_ref ) ! Namelist nampisdia in reference namelist : Pisces diagnostics |
---|
1089 | READ ( numnatp_ref, natopt, IOSTAT = ios, ERR = 901) |
---|
1090 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in reference namelist', lwp ) |
---|
1091 | |
---|
1092 | REWIND( numnatp_cfg ) ! Namelist nampisdia in configuration namelist : Pisces diagnostics |
---|
1093 | READ ( numnatp_cfg, natopt, IOSTAT = ios, ERR = 902 ) |
---|
1094 | 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nammeddia in configuration namelist', lwp ) |
---|
1095 | IF(lwm) WRITE ( numonp, natopt ) |
---|
1096 | |
---|
1097 | IF(lwp) THEN |
---|
1098 | WRITE(numout,*) 'natopt' |
---|
1099 | WRITE(numout,*) ' ' |
---|
1100 | WRITE(numout,*) ' green water absorption coeff xkg0 = ',xkg0 |
---|
1101 | WRITE(numout,*) ' red water absorption coeff xkr0 = ',xkr0 |
---|
1102 | WRITE(numout,*) ' pigment red absorption coeff xkrp = ',xkrp |
---|
1103 | WRITE(numout,*) ' pigment green absorption coeff xkgp = ',xkgp |
---|
1104 | WRITE(numout,*) ' green chl exposant xlg = ',xlg |
---|
1105 | WRITE(numout,*) ' red chl exposant xlr = ',xlr |
---|
1106 | WRITE(numout,*) ' chla/chla+phea ratio rpig = ',rpig |
---|
1107 | WRITE(numout,*) ' ' |
---|
1108 | |
---|
1109 | ENDIF |
---|
1110 | |
---|
1111 | IF(lwp) THEN |
---|
1112 | WRITE(numout,*) 'NaN check' |
---|
1113 | WRITE(numout,*) ' ' |
---|
1114 | q1 = -1. |
---|
1115 | q2 = 0. |
---|
1116 | q3 = log(q1) |
---|
1117 | write (numout,*) 'q3 = ', q3 |
---|
1118 | if ( ieee_is_nan( q3 ) ) then |
---|
1119 | write (numout,*) 'NaN detected' |
---|
1120 | else |
---|
1121 | write (numout,*) 'NaN not detected' |
---|
1122 | endif |
---|
1123 | WRITE(numout,*) ' ' |
---|
1124 | ENDIF |
---|
1125 | |
---|
1126 | END SUBROUTINE trc_nam_medusa |
---|
1127 | |
---|
1128 | #else |
---|
1129 | !!---------------------------------------------------------------------- |
---|
1130 | !! Dummy module : No MEDUSA |
---|
1131 | !!---------------------------------------------------------------------- |
---|
1132 | CONTAINS |
---|
1133 | SUBROUTINE trc_nam_medusa ! Empty routine |
---|
1134 | END SUBROUTINE trc_nam_medusa |
---|
1135 | #endif |
---|
1136 | |
---|
1137 | !!====================================================================== |
---|
1138 | END MODULE trcnam_medusa |
---|