[2359] | 1 | ###################################################### |
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| 2 | # Author : Simona Flavoni for NEMO |
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| 3 | # Contact : sflod@locean-ipsl.upmc.fr |
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| 4 | # |
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[2546] | 5 | # ---------------------------------------------------------------------- |
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| 6 | # NEMO/SETTE , NEMO Consortium (2010) |
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| 7 | # Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| 8 | # ---------------------------------------------------------------------- |
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| 9 | # |
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[2359] | 10 | # Some scripts called by sette.sh |
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| 11 | # all_functions.sh : all functions used by sette.sh |
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| 12 | ###################################################### |
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| 13 | #set -x |
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| 14 | set -o posix |
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| 15 | #set -u |
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| 16 | #set -e |
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| 17 | #+ |
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| 18 | # |
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| 19 | # ================ |
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| 20 | # all_functions.sh |
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| 21 | # ================ |
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| 22 | # |
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| 23 | # ---------------------------------------------- |
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| 24 | # Set of functions used by sette.sh (NEMO tests) |
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| 25 | # ---------------------------------------------- |
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| 26 | # |
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| 27 | # SYNOPSIS |
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| 28 | # ======== |
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| 29 | # |
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| 30 | # :: |
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| 31 | # |
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[2756] | 32 | # $ ./set_namelist INPUT_NAMELIST VARIABLE VALUE |
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[3021] | 33 | # $ post_test_tidyup |
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[2359] | 34 | # |
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| 35 | # |
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| 36 | # DESCRIPTION |
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| 37 | # =========== |
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| 38 | # |
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[2494] | 39 | # function superegrep |
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[2545] | 40 | # input variable value |
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[2500] | 41 | # |
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[2359] | 42 | # function set_namelist |
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[2545] | 43 | # input namelist_name variable value |
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| 44 | # output namelist |
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[2500] | 45 | # |
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[3021] | 46 | # function post_test_tidyup |
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| 47 | # creates nemo_validation tree, and save output & debug files |
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| 48 | # this function creates tree of validation in NEMO_VALIDATION_DIR as follows : |
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| 49 | # |
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| 50 | # NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/REVISION_NUMBER(or DATE)/TEST_NAME |
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| 51 | # |
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| 52 | # NEMO_VALIDATION_DIR : is choosen in param.cfg |
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| 53 | # |
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| 54 | # WCONFIG_NAME : set by makenemo at the moment of compilation |
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| 55 | # |
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| 56 | # WCOMPILER_NAME : set by makenemo at the moment of compilation |
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| 57 | # |
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| 58 | # REVISION_NUMBER(or DATE) : revision number by svn info, if problems with svn date is taken |
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| 59 | # |
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| 60 | # TEST_NAME : set in sette.sh for each configuration to be tested (directory TEST_NAME is created under ${NEW_CONF} directory ) |
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| 61 | # |
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[2500] | 62 | # EXAMPLES |
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| 63 | # ======== |
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| 64 | # |
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| 65 | # :: |
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| 66 | # |
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[2756] | 67 | # $ ./set_namelist namelist nn_itend 75 |
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| 68 | # $ ./set_namelist namelist_ice_lim2 cn_icerst_in \"00101231_restart_ice\" |
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[3021] | 69 | # $ post_test_tidyup |
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[2500] | 70 | # |
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| 71 | # |
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| 72 | # TODO |
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| 73 | # ==== |
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| 74 | # |
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| 75 | # option debug |
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| 76 | # |
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| 77 | # |
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| 78 | # EVOLUTIONS |
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| 79 | # ========== |
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| 80 | # |
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| 81 | # $Id$ |
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| 82 | # |
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| 83 | # * creation |
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[2507] | 84 | #- |
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[2359] | 85 | # function to find namelists parameters |
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| 86 | supergrep () { |
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| 87 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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| 88 | } |
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| 89 | |
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[2494] | 90 | usage=" Usage : set_namelist input_namelist variable_name value" |
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[2510] | 91 | usage=" if value is a string ths is neede syntax : ./set_namelist namelist_name var_name \"new_value\" " |
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[2494] | 92 | |
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[2359] | 93 | # function to set namelists parameters |
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| 94 | set_namelist () { |
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[2511] | 95 | minargcount=3 |
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[2545] | 96 | if [ ${#} -lt ${minargcount} ] |
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| 97 | then |
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| 98 | echo "not enought arguments for set_namelist" |
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[2511] | 99 | echo "${usage}" |
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| 100 | exit 1 |
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[2545] | 101 | fi |
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[2511] | 102 | unset minargcount |
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[2637] | 103 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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[2545] | 104 | touch ${SETTE_DIR}/output.sette |
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| 105 | fi |
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[2562] | 106 | |
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[2545] | 107 | echo "executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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| 108 | echo "################" >> ${SETTE_DIR}/output.sette |
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| 109 | |
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[3021] | 110 | VAR_NAME=$( supergrep $2 ${EXE_DIR}/$1 ) |
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[2637] | 111 | if [ ${#VAR_NAME} -eq 0 ] |
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| 112 | then |
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| 113 | echo "doing \"set_namelist $@\". " |
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| 114 | echo "variable: \"$2\" is empty" |
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[3021] | 115 | echo "control that variable $2 is in \"${EXE_DIR}/$1\" " |
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[2637] | 116 | echo "exit" |
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| 117 | echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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| 118 | echo "....." >> ${SETTE_DIR}/output.sette |
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| 119 | exit 1 |
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| 120 | fi |
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[3021] | 121 | sed -e "s/${VAR_NAME}.*/${VAR_NAME}/" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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| 122 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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| 123 | sed -e "s/${VAR_NAME}/$2=$3/" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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| 124 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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[2583] | 125 | |
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[2545] | 126 | echo "finished script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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| 127 | echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette |
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| 128 | echo " " >> ${SETTE_DIR}/output.sette |
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[2359] | 129 | } |
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[3021] | 130 | |
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| 131 | # function to tidy up after each test and populate the NEMO_VALIDATION store |
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| 132 | post_test_tidyup () { |
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| 133 | # |
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| 134 | # requires the following variables defined and exported from the calling script: |
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| 135 | # SETTE_DIR |
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| 136 | # INPUT_DIR |
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| 137 | # EXE_DIR |
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| 138 | # CONFIG_DIR |
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| 139 | # NEMO_VALIDATION_DIR |
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| 140 | # NEW_CONF |
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| 141 | # CMP_NAM |
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| 142 | # TEST_NAME |
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| 143 | echo "SETTE directory is : ${SETTE_DIR}" |
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| 144 | echo "INPUT directory is : ${INPUT_DIR}" |
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| 145 | echo "EXECUTION directory is : ${EXE_DIR}" |
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| 146 | echo "CONFIG directory is : ${CONFIG_DIR}" |
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| 147 | echo "VALIDATION directory is : ${NEMO_VALIDATION_DIR}" |
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| 148 | echo "NEW CONFIGURATION is : ${NEW_CONF}" |
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| 149 | echo "COMPILER is : ${CMP_NAM}" |
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| 150 | echo "TEST is : ${TEST_NAME}" |
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| 151 | ################################################################ |
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| 152 | # SMALL DEBUG |
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| 153 | if [ ! -r ${EXE_DIR}/time.step ] |
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| 154 | then |
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| 155 | echo "file time.step does not exist" >> ${SETTE_DIR}/output.sette |
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| 156 | echo "some problems during execution of model" >> ${SETTE_DIR}/output.sette |
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| 157 | exit 1 |
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| 158 | else |
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| 159 | echo "file time.step exists" >> ${SETTE_DIR}/output.sette |
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| 160 | echo "ok model run" >> ${SETTE_DIR}/output.sette |
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| 161 | fi |
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| 162 | ################################################################ |
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| 163 | |
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| 164 | ################################################################ |
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| 165 | # Creation of NEMO_VALIDATION tree |
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| 166 | export LANG=en_US |
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| 167 | cd ${CONFIG_DIR} |
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| 168 | cd ../ |
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| 169 | REVISION_NB=`svn info | grep -i "Revision:" | sed -e "s/ //" | cut -d ":" -f 2` |
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| 170 | if [ ${#REVISION_NB} -eq 0 ] |
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| 171 | then |
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| 172 | echo "some problems with svn info command" |
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| 173 | echo "some problems with svn info command" >> ${SETTE_DIR}/output.sette |
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| 174 | REVISION_NB=`date +%Y%m%d` |
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| 175 | echo "put in ${REVISION_NB} date" |
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| 176 | echo "put in ${REVISION_NB} date" >> ${SETTE_DIR}/output.sette |
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| 177 | else |
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| 178 | echo "value of revision number of NEMOGCM: ${REVISION_NB}" |
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| 179 | fi |
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| 180 | cd ${NEMO_VALIDATION_DIR} |
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| 181 | `mkdir -p ${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME}` |
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| 182 | NEMO_VALID=${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME} |
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| 183 | if [ -d ${NEMO_VALID} ] ; then |
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| 184 | echo "created ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 185 | else |
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| 186 | echo "problems in creating ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 187 | echo "EXIT," |
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| 188 | exit 1 |
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| 189 | fi |
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| 190 | # Save output & debug files in NEMO_VALIDATION tree |
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| 191 | echo "saving ocean & ice output, solver.stat, tracer.stat files ...." >> ${SETTE_DIR}/output.sette |
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| 192 | echo " " >> ${SETTE_DIR}/output.sette |
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| 193 | [ -f ${EXE_DIR}/*ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/. |
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| 194 | [ -f ${EXE_DIR}/*solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/. |
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| 195 | [ -f ${EXE_DIR}/*tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/. |
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| 196 | if [ -n "$(ls ${NEMO_VALID}/*solver*)" ] ; then |
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| 197 | echo "moved solver.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 198 | echo "moved solver.stat in ${NEMO_VALID} directory" |
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| 199 | else |
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| 200 | echo "problem in looking for solver.stat file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 201 | echo "solver.stat IS NOT in ${NEMO_VALID} directory" |
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| 202 | fi |
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| 203 | if [ -n "$(ls ${NEMO_VALID}/*ocean.output*)" ] ; then |
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| 204 | echo "moved ocean.output in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 205 | echo "moved ocean.output in ${NEMO_VALID} directory" |
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| 206 | else |
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| 207 | echo "problem in looking for ocean.output file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 208 | echo "ocean.output IS NOT in ${NEMO_VALID} directory" |
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| 209 | fi |
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| 210 | if [ -n "$(ls ${NEMO_VALID}/*tracer.stat*)" ] ; then |
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| 211 | echo "moved tracer.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 212 | echo "moved tracer.stat in ${NEMO_VALID} directory" |
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| 213 | else |
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| 214 | echo "problem in looking for tracer.stat file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 215 | echo "tracer.stat IS NOT in ${NEMO_VALID} directory" |
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| 216 | fi |
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| 217 | } |
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