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iom.F90 in NEMO/branches/2020/dev_12905_xios_restart/src/OCE/IOM – NEMO

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source: NEMO/branches/2020/dev_12905_xios_restart/src/OCE/IOM/iom.F90 @ 12961

Last change on this file since 12961 was 12961, checked in by andmirek, 4 years ago
Ticket #2462: read/write restart with XIOS in TOP (with debug print statements)
Property svn:keywords set to `Id`
File size: 125.7 KB

Rev	Line
[544]	1	MODULE iom
[9019]	2	!!======================================================================
[544]	3	!! * MODULE iom *
	4	!! Input/Output manager : Library to read input files
[9019]	5	!!======================================================================
[3764]	6	!! History : 2.0 ! 2005-12 (J. Belier) Original code
	7	!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
	8	!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
	9	!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
[6140]	10	!! 3.6 ! 2014-15 DIMG format removed
[7646]	11	!! 3.6 ! 2015-15 (J. Harle) Added procedure to read REAL attributes
[9019]	12	!! 4.0 ! 2017-11 (M. Andrejczuk) Extend IOM interface to write any 3D fields
	13	!!----------------------------------------------------------------------
[544]	14
[9019]	15	!!----------------------------------------------------------------------
[544]	16	!! iom_open : open a file read only
	17	!! iom_close : close a file or all files opened by iom
	18	!! iom_get : read a field (interfaced to several routines)
	19	!! iom_varid : get the id of a variable in a file
	20	!! iom_rstput : write a field in a restart file (interfaced to several routines)
[9019]	21	!!----------------------------------------------------------------------
[544]	22	USE dom_oce ! ocean space and time domain
[3764]	23	USE c1d ! 1D vertical configuration
[3294]	24	USE flo_oce ! floats module declarations
[679]	25	USE lbclnk ! lateal boundary condition / mpp exchanges
[544]	26	USE iom_def ! iom variables definitions
	27	USE iom_nf90 ! NetCDF format with native NetCDF library
[2715]	28	USE in_out_manager ! I/O manager
	29	USE lib_mpp ! MPP library
[1412]	30	#if defined key_iomput
[12377]	31	USE sbc_oce , ONLY : nn_fsbc, ght_abl, ghw_abl, e3t_abl, e3w_abl, jpka, jpkam1
[9019]	32	USE icb_oce , ONLY : nclasses, class_num ! !: iceberg classes
[9570]	33	#if defined key_si3
[9019]	34	USE ice , ONLY : jpl
[4691]	35	#endif
[1725]	36	USE domngb ! ocean space and time domain
	37	USE phycst ! physical constants
	38	USE dianam ! build name of file
[3695]	39	USE xios
[1359]	40	# endif
[4148]	41	USE ioipsl, ONLY : ju2ymds ! for calendar
[4152]	42	USE crs ! Grid coarsening
[10222]	43	#if defined key_top
	44	USE trc, ONLY : profsed
	45	#endif
[9367]	46	USE lib_fortran
[12377]	47	USE diu_bulk, ONLY : ln_diurnal_only, ln_diurnal
[12950]	48	USE iom_nf90
	49	USE netcdf
[1359]	50
[544]	51	IMPLICIT NONE
[556]	52	PUBLIC ! must be public to be able to access iom_def through iom
[550]	53
[1457]	54	#if defined key_iomput
[1725]	55	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
[1457]	56	#else
	57	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
	58	#endif
[12377]	59	PUBLIC iom_init, iom_init_closedef, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_get_var
[10522]	60	PUBLIC iom_chkatt, iom_getatt, iom_putatt, iom_getszuld, iom_rstput, iom_delay_rst, iom_put
[12377]	61	PUBLIC iom_use, iom_context_finalize, iom_update_file_name, iom_miss_val
[544]	62
[752]	63	PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
	64	PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d
[12276]	65	PRIVATE iom_p1d, iom_p2d, iom_p3d, iom_p4d
[1412]	66	#if defined key_iomput
[4148]	67	PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
[12377]	68	PRIVATE set_grid, set_grid_bounds, set_scalar, set_xmlatt, set_mooring, iom_sdate
[12950]	69	PRIVATE iom_set_rst_context, iom_set_rstr_active
[1359]	70	# endif
[12950]	71	PRIVATE iom_set_rstw_active
[752]	72
[544]	73	INTERFACE iom_get
[550]	74	MODULE PROCEDURE iom_g0d, iom_g1d, iom_g2d, iom_g3d
[544]	75	END INTERFACE
[2528]	76	INTERFACE iom_getatt
[10425]	77	MODULE PROCEDURE iom_g0d_iatt, iom_g1d_iatt, iom_g0d_ratt, iom_g1d_ratt, iom_g0d_catt
[2528]	78	END INTERFACE
[7646]	79	INTERFACE iom_putatt
[10425]	80	MODULE PROCEDURE iom_p0d_iatt, iom_p1d_iatt, iom_p0d_ratt, iom_p1d_ratt, iom_p0d_catt
[7646]	81	END INTERFACE
[544]	82	INTERFACE iom_rstput
[550]	83	MODULE PROCEDURE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
[544]	84	END INTERFACE
[9802]	85	INTERFACE iom_put
[12276]	86	MODULE PROCEDURE iom_p0d, iom_p1d, iom_p2d, iom_p3d, iom_p4d
[9802]	87	END INTERFACE iom_put
	88
[12377]	89	!! * Substitutions
	90	# include "do_loop_substitute.h90"
[544]	91	!!----------------------------------------------------------------------
[9598]	92	!! NEMO/OCE 4.0 , NEMO Consortium (2018)
[1152]	93	!! $Id$
[10068]	94	!! Software governed by the CeCILL license (see ./LICENSE)
[544]	95	!!----------------------------------------------------------------------
	96	CONTAINS
	97
[12961]	98	SUBROUTINE iom_init( cdname, fname, idfp, ld_tmppatch, ld_closedef )
[1359]	99	!!----------------------------------------------------------------------
	100	!! * ROUTINE *
	101	!!
	102	!! ** Purpose :
	103	!!
	104	!!----------------------------------------------------------------------
[9903]	105	CHARACTER(len=*), INTENT(in) :: cdname
[9367]	106	CHARACTER(len=*), OPTIONAL, INTENT(in) :: fname
[12961]	107	INTEGER , OPTIONAL, INTENT(in) :: idfp ! pointer to netcdf file for restart reading with XIOS
[9903]	108	LOGICAL , OPTIONAL, INTENT(in) :: ld_tmppatch
[12377]	109	LOGICAL , OPTIONAL, INTENT(in) :: ld_closedef
[1412]	110	#if defined key_iomput
[9019]	111	!
[7646]	112	TYPE(xios_duration) :: dtime = xios_duration(0, 0, 0, 0, 0, 0)
	113	TYPE(xios_date) :: start_date
[9367]	114	CHARACTER(len=lc) :: clname
[12276]	115	INTEGER :: irefyear, irefmonth, irefday
[12597]	116	INTEGER :: ji
[12957]	117	LOGICAL :: llrst_context ! is context related to restart
[12961]	118	LOGICAL :: llrstr, llrstw
[12957]	119	INTEGER :: inum
[5415]	120	!
[7646]	121	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zt_bnds, zw_bnds
[12377]	122	REAL(wp), DIMENSION(2,jpkam1) :: za_bnds ! ABL vertical boundaries
[9903]	123	LOGICAL :: ll_tmppatch = .TRUE. !: seb: patch before we remove periodicity
	124	INTEGER :: nldi_save, nlei_save !: and close boundaries in output files
	125	INTEGER :: nldj_save, nlej_save !:
[12914]	126	LOGICAL :: ll_closedef
[1359]	127	!!----------------------------------------------------------------------
[9019]	128	!
[9802]	129	! seb: patch before we remove periodicity and close boundaries in output files
[9903]	130	IF( PRESENT(ld_tmppatch) ) THEN ; ll_tmppatch = ld_tmppatch
	131	ELSE ; ll_tmppatch = .TRUE.
	132	ENDIF
	133	IF ( ll_tmppatch ) THEN
[9802]	134	nldi_save = nldi ; nlei_save = nlei
	135	nldj_save = nldj ; nlej_save = nlej
	136	IF( nimpp == 1 ) nldi = 1
	137	IF( nimpp + jpi - 1 == jpiglo ) nlei = jpi
	138	IF( njmpp == 1 ) nldj = 1
	139	IF( njmpp + jpj - 1 == jpjglo ) nlej = jpj
	140	ENDIF
[12914]	141	!
	142	ll_closedef = .TRUE.
[12377]	143	IF ( PRESENT(ld_closedef) ) ll_closedef = ld_closedef
[9802]	144	!
[7646]	145	ALLOCATE( zt_bnds(2,jpk), zw_bnds(2,jpk) )
[9019]	146	!
[12957]	147	IF(lwp) write(numout, *) 'TEST IOM_INIT: ', TRIM(cdname),' File: ', TRIM(fname)
	148	IF(lwp) CALL FLUSH(numout)
[4152]	149	clname = cdname
	150	IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(cdname)
[9570]	151	CALL xios_context_initialize(TRIM(clname), mpi_comm_oce)
[4152]	152	CALL iom_swap( cdname )
[1359]	153
[12961]	154	llrstr = (TRIM(cdname) == TRIM(crxios_context)) .OR. (TRIM(cdname) == TRIM(crixios_context))
	155	llrstr = llrstr .OR. (TRIM(cdname) == TRIM(crtxios_context))
	156	llrstr = llrstr .OR. (TRIM(cdname) == TRIM(crsxios_context))
	157
	158	llrstw = (TRIM(cdname) == TRIM(cwxios_context)) .OR. (TRIM(cdname) == TRIM(cwixios_context))
	159	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwtxios_context))
	160	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwsxios_context))
	161
	162	llrst_context = llrstr .OR. llrstw
	163
[7646]	164	! Calendar type is now defined in xml file
[12276]	165	IF (.NOT.(xios_getvar('ref_year' ,irefyear ))) irefyear = 1900
	166	IF (.NOT.(xios_getvar('ref_month',irefmonth))) irefmonth = 01
	167	IF (.NOT.(xios_getvar('ref_day' ,irefday ))) irefday = 01
	168
[1725]	169	SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
[12276]	170	CASE ( 1) ; CALL xios_define_calendar( TYPE = "Gregorian", time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	171	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	172	CASE ( 0) ; CALL xios_define_calendar( TYPE = "NoLeap" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	173	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	174	CASE (30) ; CALL xios_define_calendar( TYPE = "D360" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	175	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[1725]	176	END SELECT
[1359]	177
	178	! horizontal grid definition
[9367]	179	IF(.NOT.llrst_context) CALL set_scalar
[9019]	180	!
[5407]	181	IF( TRIM(cdname) == TRIM(cxios_context) ) THEN
[9984]	182	CALL set_grid( "T", glamt, gphit, .FALSE., .FALSE. )
	183	CALL set_grid( "U", glamu, gphiu, .FALSE., .FALSE. )
	184	CALL set_grid( "V", glamv, gphiv, .FALSE., .FALSE. )
	185	CALL set_grid( "W", glamt, gphit, .FALSE., .FALSE. )
[5385]	186	CALL set_grid_znl( gphit )
[5415]	187	!
	188	IF( ln_cfmeta ) THEN ! Add additional grid metadata
[5836]	189	CALL iom_set_domain_attr("grid_T", area = e1e2t(nldi:nlei, nldj:nlej))
	190	CALL iom_set_domain_attr("grid_U", area = e1e2u(nldi:nlei, nldj:nlej))
	191	CALL iom_set_domain_attr("grid_V", area = e1e2v(nldi:nlei, nldj:nlej))
	192	CALL iom_set_domain_attr("grid_W", area = e1e2t(nldi:nlei, nldj:nlej))
[5415]	193	CALL set_grid_bounds( "T", glamf, gphif, glamt, gphit )
	194	CALL set_grid_bounds( "U", glamv, gphiv, glamu, gphiu )
	195	CALL set_grid_bounds( "V", glamu, gphiu, glamv, gphiv )
	196	CALL set_grid_bounds( "W", glamf, gphif, glamt, gphit )
	197	ENDIF
[4152]	198	ENDIF
[9019]	199	!
[5407]	200	IF( TRIM(cdname) == TRIM(cxios_context)//"_crs" ) THEN
[4152]	201	CALL dom_grid_crs ! Save the parent grid information & Switch to coarse grid domain
	202	!
[9984]	203	CALL set_grid( "T", glamt_crs, gphit_crs, .FALSE., .FALSE. )
	204	CALL set_grid( "U", glamu_crs, gphiu_crs, .FALSE., .FALSE. )
	205	CALL set_grid( "V", glamv_crs, gphiv_crs, .FALSE., .FALSE. )
	206	CALL set_grid( "W", glamt_crs, gphit_crs, .FALSE., .FALSE. )
[5385]	207	CALL set_grid_znl( gphit_crs )
[4152]	208	!
	209	CALL dom_grid_glo ! Return to parent grid domain
[5415]	210	!
[9367]	211	IF( ln_cfmeta .AND. .NOT. llrst_context) THEN ! Add additional grid metadata
[5415]	212	CALL iom_set_domain_attr("grid_T", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	213	CALL iom_set_domain_attr("grid_U", area = e1u_crs(nldi:nlei, nldj:nlej) * e2u_crs(nldi:nlei, nldj:nlej))
	214	CALL iom_set_domain_attr("grid_V", area = e1v_crs(nldi:nlei, nldj:nlej) * e2v_crs(nldi:nlei, nldj:nlej))
	215	CALL iom_set_domain_attr("grid_W", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	216	CALL set_grid_bounds( "T", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	217	CALL set_grid_bounds( "U", glamv_crs, gphiv_crs, glamu_crs, gphiu_crs )
	218	CALL set_grid_bounds( "V", glamu_crs, gphiu_crs, glamv_crs, gphiv_crs )
	219	CALL set_grid_bounds( "W", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	220	ENDIF
[4152]	221	ENDIF
[9019]	222	!
[1359]	223	! vertical grid definition
[9367]	224	IF(.NOT.llrst_context) THEN
[12377]	225	CALL iom_set_axis_attr( "deptht", paxis = gdept_1d )
	226	CALL iom_set_axis_attr( "depthu", paxis = gdept_1d )
	227	CALL iom_set_axis_attr( "depthv", paxis = gdept_1d )
	228	CALL iom_set_axis_attr( "depthw", paxis = gdepw_1d )
[9367]	229
[12377]	230	! ABL
	231	IF( .NOT. ALLOCATED(ght_abl) ) THEN ! force definition for xml files (xios)
	232	ALLOCATE( ght_abl(jpka), ghw_abl(jpka), e3t_abl(jpka), e3w_abl(jpka) ) ! default allocation needed by iom
	233	ght_abl(:) = -1._wp ; ghw_abl(:) = -1._wp
	234	e3t_abl(:) = -1._wp ; e3w_abl(:) = -1._wp
	235	ENDIF
	236	CALL iom_set_axis_attr( "ght_abl", ght_abl(2:jpka) )
	237	CALL iom_set_axis_attr( "ghw_abl", ghw_abl(2:jpka) )
	238
[9367]	239	! Add vertical grid bounds
[12597]	240	zt_bnds(2,: ) = gdept_1d(:)
	241	zt_bnds(1,2:jpk ) = gdept_1d(1:jpkm1)
	242	zt_bnds(1,1 ) = gdept_1d(1) - e3w_1d(1)
	243	zw_bnds(1,: ) = gdepw_1d(:)
	244	zw_bnds(2,1:jpkm1) = gdepw_1d(2:jpk)
	245	zw_bnds(2,jpk: ) = gdepw_1d(jpk) + e3t_1d(jpk)
[12377]	246	CALL iom_set_axis_attr( "deptht", bounds=zw_bnds )
	247	CALL iom_set_axis_attr( "depthu", bounds=zw_bnds )
	248	CALL iom_set_axis_attr( "depthv", bounds=zw_bnds )
	249	CALL iom_set_axis_attr( "depthw", bounds=zt_bnds )
	250
	251	! ABL
	252	za_bnds(1,:) = ghw_abl(1:jpkam1)
	253	za_bnds(2,:) = ghw_abl(2:jpka )
	254	CALL iom_set_axis_attr( "ght_abl", bounds=za_bnds )
	255	za_bnds(1,:) = ght_abl(2:jpka )
	256	za_bnds(2,:) = ght_abl(2:jpka ) + e3w_abl(2:jpka)
	257	CALL iom_set_axis_attr( "ghw_abl", bounds=za_bnds )
	258
[9580]	259	CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,jpnfl) /) )
[9570]	260	# if defined key_si3
[9367]	261	CALL iom_set_axis_attr( "ncatice", (/ (REAL(ji,wp), ji=1,jpl) /) )
	262	! SIMIP diagnostics (4 main arctic straits)
	263	CALL iom_set_axis_attr( "nstrait", (/ (REAL(ji,wp), ji=1,4) /) )
[9019]	264	# endif
[10222]	265	#if defined key_top
[10817]	266	IF( ALLOCATED(profsed) ) CALL iom_set_axis_attr( "profsed", paxis = profsed )
[10222]	267	#endif
[9367]	268	CALL iom_set_axis_attr( "icbcla", class_num )
[10817]	269	CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) ) ! strange syntaxe and idea...
[12276]	270	CALL iom_set_axis_attr( "iax_26C", (/ REAL(26,wp) /) ) ! strange syntaxe and idea...
[10817]	271	CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) ) ! strange syntaxe and idea...
[12276]	272	CALL iom_set_axis_attr( "basin" , (/ (REAL(ji,wp), ji=1,5) /) )
[9367]	273	ENDIF
	274	!
[1725]	275	! automatic definitions of some of the xml attributs
[12957]	276	IF(lwp) write(numout, *) 'TEST IOM_INIT: ', TRIM(cdname), TRIM(cdname) == TRIM(crixios_context)
	277	IF(lwp) CALL FLUSH(numout)
[12961]	278	IF(llrstr) THEN
	279	IF(PRESENT(idfp)) THEN
	280	CALL iom_set_rst_context(.TRUE.)
	281	!set which fields will be read from restart file
	282	CALL iom_set_rstr_active(fname, idfp)
[12957]	283	ELSE
[12961]	284	CALL ctl_stop( 'iom_init:', 'restart read with XIOS: missing pointer to NETCDF file' )
[12957]	285	ENDIF
[12961]	286	ELSE IF(llrstw) THEN
[12950]	287	CALL iom_set_rstw_file(fname)
[9367]	288	ELSE
	289	CALL set_xmlatt
	290	ENDIF
[9019]	291	!
[12377]	292	! set time step length
[12489]	293	dtime%second = rn_Dt
[9019]	294	CALL xios_set_timestep( dtime )
	295	!
[12377]	296	! conditional closure of context definition
	297	IF ( ll_closedef ) CALL iom_init_closedef
	298	!
[7646]	299	DEALLOCATE( zt_bnds, zw_bnds )
[9019]	300	!
[9903]	301	IF ( ll_tmppatch ) THEN
[9802]	302	nldi = nldi_save ; nlei = nlei_save
	303	nldj = nldj_save ; nlej = nlej_save
	304	ENDIF
[1359]	305	#endif
[9019]	306	!
[1359]	307	END SUBROUTINE iom_init
	308
[12950]	309	SUBROUTINE iom_init_closedef(cdname)
[12377]	310	!!----------------------------------------------------------------------
	311	!! * SUBROUTINE iom_init_closedef *
	312	!!----------------------------------------------------------------------
	313	!!
	314	!! ** Purpose : Closure of context definition
	315	!!
	316	!!----------------------------------------------------------------------
[12950]	317	CHARACTER(len=*), OPTIONAL, INTENT(IN) :: cdname
	318	#if defined key_iomput
[12957]	319	LOGICAL :: llrstw
	320
	321	IF(lwp) write(numout, *) 'XIOS CLOSE definitions for: ', TRIM(cdname)
	322	llrstw = .FALSE.
[12961]	323	IF(PRESENT(cdname)) THEN
	324	llrstw = (TRIM(cdname) == TRIM(cwxios_context))
	325	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwixios_context))
	326	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwtxios_context))
	327	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwsxios_context))
[12957]	328	ENDIF
	329
	330	IF( llrstw ) THEN
[12950]	331	!set names of the fields in restart file IF using XIOS to write data
	332	CALL iom_set_rst_context(.FALSE.)
[12961]	333	CALL xios_close_context_definition()
	334	ELSE
	335	CALL xios_close_context_definition()
	336	CALL xios_update_calendar( 0 )
[12950]	337	ENDIF
[12377]	338	#else
	339	IF( .FALSE. ) WRITE(numout,*) 'iom_init_closedef: should not see this' ! useless statement to avoid compilation warnings
	340	#endif
	341
	342	END SUBROUTINE iom_init_closedef
	343
[12957]	344	SUBROUTINE iom_set_rstr_active(cdfname, idnum)
[9367]	345	!!---------------------------------------------------------------------
	346	!! * SUBROUTINE iom_set_rstr_active *
	347	!!
	348	!! ** Purpose : define file name in XIOS context for reading restart file,
	349	!! enable variables present in restart file for reading with XIOS
	350	!!---------------------------------------------------------------------
	351
	352	!sets enabled = .TRUE. for each field in restart file
[12957]	353	CHARACTER(len=*), INTENT(IN) :: cdfname
	354	INTEGER , INTENT(IN) :: idnum
[9535]	355	#if defined key_iomput
[12950]	356	INTEGER :: ndims, nvars, natts, unlimitedDimId, dimlen, xtype,mdims
	357	TYPE(xios_field) :: field_hdl
	358	TYPE(xios_file) :: file_hdl
	359	TYPE(xios_filegroup) :: filegroup_hdl
	360	INTEGER :: dimids(4), jv,i, idim
	361	CHARACTER(LEN=256) :: clinfo ! info character
	362	INTEGER, ALLOCATABLE :: indimlens(:)
	363	CHARACTER(LEN=nf90_max_name), ALLOCATABLE :: indimnames(:)
	364	CHARACTER(LEN=nf90_max_name) :: dimname, varname
	365	LOGICAL :: lmeta
[9367]	366
[12950]	367	!failed to build with AGRIF
	368	! meta(1:NMETA) = ["nav_lat", &
	369	! "nav_lon", "nav_lev", "time_instant", &
	370	! "time_instant_bounds", "time_counter", &
	371	! "time_counter_bounds", "x", "y", "numcat"]
	372
	373	meta(1) = "nav_lat"
	374	meta(2) = "nav_lon"
	375	meta(3) = "nav_lev"
	376	meta(4) = "time_instant"
	377	meta(5) = "time_instant_bounds"
	378	meta(6) = "time_counter"
	379	meta(7) = "time_counter_bounds"
	380	meta(8) = "x"
	381	meta(9) = "y"
	382	meta(10) = "numcat"
	383
[12957]	384	clinfo = ' iom_set_rstr_active, file: '//TRIM(cdfname)
[12950]	385
[12957]	386	IF(lwp) write(numout, *) TRIM(clinfo)
	387	IF(lwp) CALL FLUSH(numout)
[9367]	388	!set name of the restart file and enable available fields
	389	CALL xios_get_handle("file_definition", filegroup_hdl )
	390	CALL xios_add_child(filegroup_hdl, file_hdl, 'rrestart')
[12957]	391	CALL xios_set_file_attr( "rrestart", name=trim(cdfname), type="one_file", &
[9367]	392	par_access="collective", enabled=.TRUE., mode="read", &
	393	output_freq=xios_timestep)
	394
[12961]	395	CALL iom_nf90_check( nf90_inquire(idnum, ndims, nvars, natts ), clinfo )
[12950]	396	ALLOCATE(indimlens(ndims), indimnames(ndims))
[12961]	397	CALL iom_nf90_check( nf90_inquire(idnum, unlimitedDimId = unlimitedDimId ), clinfo )
[9367]	398
[12950]	399	DO idim = 1, ndims
[12961]	400	CALL iom_nf90_check( nf90_inquire_dimension(idnum, idim, dimname, dimlen ), clinfo )
[12950]	401	indimlens(idim) = dimlen
	402	indimnames(idim) = dimname
	403	ENDDO
[9367]	404
[12950]	405	DO jv =1, nvars
	406	lmeta = .FALSE.
[12961]	407	CALL iom_nf90_check( nf90_inquire_variable(idnum, jv, varname, xtype, ndims, dimids, natts ), clinfo )
[12950]	408	DO i = 1, NMETA
	409	IF(TRIM(varname) == TRIM(meta(i))) THEN
	410	lmeta = .TRUE.
	411	ENDIF
	412	ENDDO
	413	IF(.NOT.lmeta) THEN
	414	CALL xios_add_child(file_hdl, field_hdl, TRIM(varname))
[12957]	415	if(lwp) write(numout, *) 'ADD field: ', TRIM(varname)
	416	IF(lwp) CALL FLUSH(numout)
[12950]	417	mdims = ndims
[9367]	418
[12950]	419	IF(ANY(dimids(1:ndims) == unlimitedDimId)) THEN
	420	mdims = mdims - 1
	421	ENDIF
[9367]	422
[12950]	423	IF(mdims == 3) THEN
[12957]	424	if(lwp) write(numout, *) '3D', indimlens(ndims)
	425	IF(lwp) CALL FLUSH(numout)
	426
[12950]	427	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	428	domain_ref="grid_N", axis_ref=TRIM(iom_axis(indimlens(ndims))), &
	429	prec = 8, operation = "instant")
	430	ELSEIF(mdims == 2) THEN
[12957]	431	if(lwp) write(numout, *) '2D'
	432	IF(lwp) CALL FLUSH(numout)
	433
[12950]	434	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	435	domain_ref="grid_N", prec = 8, operation = "instant")
	436	ELSEIF(mdims == 1) THEN
[12957]	437	if(lwp) write(numout, *) '1D', indimlens(ndims)
	438	IF(lwp) CALL FLUSH(numout)
	439
[12950]	440	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	441	axis_ref=TRIM(iom_axis(indimlens(ndims))), prec = 8, operation = "instant")
	442	ELSEIF(mdims == 0) THEN
[12957]	443	if(lwp) write(numout, *) '0D'
	444	IF(lwp) CALL FLUSH(numout)
	445
[12950]	446	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	447	scalar_ref = "grid_scalar", prec = 8, operation = "instant")
	448	ELSE
[12957]	449	if(lwp) write(numout, *) 'WAHT?'
	450	IF(lwp) CALL FLUSH(numout)
	451
	452	WRITE(ctmp1,*) 'iom_set_rstr_active: variable ', TRIM(varname) ,' incorrect number of dimensions'
	453	CALL ctl_stop( 'iom_set_rstr_active:', ctmp1 )
[12950]	454	ENDIF
	455	ENDIF
	456	ENDDO
	457	DEALLOCATE(indimlens, indimnames)
	458	#endif
	459	END SUBROUTINE iom_set_rstr_active
[9367]	460
[12950]	461	SUBROUTINE iom_set_rstw_file(cdrst_file)
[9367]	462	!!---------------------------------------------------------------------
[12950]	463	!! * SUBROUTINE iom_set_rstw_file *
[9367]	464	!!
	465	!! ** Purpose : define file name in XIOS context for writing restart
	466	!!---------------------------------------------------------------------
	467	CHARACTER(len=*) :: cdrst_file
	468	#if defined key_iomput
	469	TYPE(xios_file) :: file_hdl
	470	TYPE(xios_filegroup) :: filegroup_hdl
	471	INTEGER :: i
	472	CHARACTER(lc) :: clpath
	473
	474	!set name of the restart file and enable available fields
	475	IF(lwp) WRITE(numout,*) 'Setting restart filename (for XIOS write) to: ',cdrst_file
[12957]	476	IF(lwp) CALL FLUSH(numout)
[9367]	477	CALL xios_get_handle("file_definition", filegroup_hdl )
	478	CALL xios_add_child(filegroup_hdl, file_hdl, 'wrestart')
	479	IF(nxioso.eq.1) THEN
	480	CALL xios_set_file_attr( "wrestart", type="one_file", enabled=.TRUE.,&
	481	mode="write", output_freq=xios_timestep)
	482	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in one_file mode'
	483	ELSE
	484	CALL xios_set_file_attr( "wrestart", type="multiple_file", enabled=.TRUE.,&
	485	mode="write", output_freq=xios_timestep)
	486	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in multiple_file mode'
	487	ENDIF
	488	CALL xios_set_file_attr( "wrestart", name=trim(cdrst_file))
[12950]	489	#endif
	490	END SUBROUTINE iom_set_rstw_file
	491
	492
	493	SUBROUTINE iom_set_rstw_active(sdfield, rd0, rd1, rd2, rd3)
	494	!!---------------------------------------------------------------------
	495	!! * SUBROUTINE iom_set_rstw_active *
	496	!!
	497	!! ** Purpose : define file name in XIOS context for writing restart
	498	!! enable variables present in restart file for writing
	499	!!---------------------------------------------------------------------
	500	!sets enabled = .TRUE. for each field in restart file
	501	CHARACTER(len = *), INTENT(IN) :: sdfield
	502	REAL(wp), OPTIONAL, INTENT(IN) :: rd0
	503	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:) :: rd1
	504	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:, :) :: rd2
	505	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:, :, :) :: rd3
	506	#if defined key_iomput
	507	TYPE(xios_field) :: field_hdl
	508	TYPE(xios_file) :: file_hdl
	509	INTEGER :: i
	510	CHARACTER(lc) :: clpath
	511	CHARACTER(len=1024) :: fname
	512	CHARACTER(len=lc) :: axis_ref
	513
	514	CALL xios_get_handle("wrestart", file_hdl)
[9367]	515	!define fields for restart context
[12950]	516	CALL xios_add_child(file_hdl, field_hdl, TRIM(sdfield))
	517
	518	IF(PRESENT(rd3)) THEN
[12961]	519	IF(lwp) write(numout, *) TRIM(sdfield), ' 3D ', size(rd3,3)
	520	IF(lwp) CALL FLUSH(numout)
[12950]	521	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	522	domain_ref="grid_N", axis_ref=TRIM(iom_axis(size(rd3, 3))), &
	523	prec = 8, operation = "instant")
	524	ENDIF
	525
	526	IF(PRESENT(rd2)) THEN
[12961]	527	IF(lwp) write(numout, *) TRIM(sdfield), ' 2D'
	528	IF(lwp) CALL FLUSH(numout)
[12950]	529	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	530	domain_ref="grid_N", prec = 8, operation = "instant")
	531	ENDIF
	532
	533	IF(PRESENT(rd1)) THEN
[12961]	534	IF(lwp) write(numout, *) TRIM(sdfield), ' 1D ', size(rd1,1)
	535	IF(lwp) CALL FLUSH(numout)
[12950]	536	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	537	axis_ref=TRIM(iom_axis(size(rd1, 1))), prec = 8, operation = "instant")
	538	ENDIF
	539
	540	IF(PRESENT(rd0)) THEN
[12961]	541	IF(lwp) write(numout, *) TRIM(sdfield), ' 0D'
	542	IF(lwp) CALL FLUSH(numout)
[12950]	543	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	544	scalar_ref = "grid_scalar", prec = 8, operation = "instant")
	545	ENDIF
[9367]	546	#endif
	547	END SUBROUTINE iom_set_rstw_active
	548
[12950]	549	FUNCTION iom_axis(idlev) result(axis_ref)
	550	!!---------------------------------------------------------------------
	551	!! * FUNCTION iom_axis *
	552	!!
	553	!! ** Purpose : Used for grid definition when XIOS is used to read/write
	554	!! restart. Returns axis corresponding to the number of levels
	555	!! given as an input variable. Axes are defined in routine
	556	!! iom_set_rst_context
	557	!!---------------------------------------------------------------------
	558	INTEGER, INTENT(IN) :: idlev
	559	CHARACTER(len=lc) :: axis_ref
	560	CHARACTER(len=12) :: str
	561	IF(idlev == jpk) THEN
	562	axis_ref="nav_lev"
	563	#if defined key_si3
	564	ELSEIF(idlev == jpl) THEN
	565	axis_ref="numcat"
	566	#endif
	567	ELSE
	568	write(str, *) idlev
	569	CALL ctl_stop( 'iom_axis', 'Definition for axis with '//TRIM(ADJUSTL(str))//' levels missing')
	570	ENDIF
	571	END FUNCTION iom_axis
	572
[9984]	573	SUBROUTINE iom_set_rst_context(ld_rstr)
[9367]	574	!!---------------------------------------------------------------------
[9535]	575	!! * SUBROUTINE iom_set_rst_context *
[9367]	576	!!
	577	!! ** Purpose : Define domain, axis and grid for restart (read/write)
	578	!! context
	579	!!
	580	!!---------------------------------------------------------------------
[9984]	581	LOGICAL, INTENT(IN) :: ld_rstr
[12950]	582	INTEGER :: ji
[9367]	583	#if defined key_iomput
	584	TYPE(xios_domaingroup) :: domaingroup_hdl
	585	TYPE(xios_domain) :: domain_hdl
	586	TYPE(xios_axisgroup) :: axisgroup_hdl
	587	TYPE(xios_axis) :: axis_hdl
	588	TYPE(xios_scalar) :: scalar_hdl
	589	TYPE(xios_scalargroup) :: scalargroup_hdl
	590
	591	CALL xios_get_handle("domain_definition",domaingroup_hdl)
	592	CALL xios_add_child(domaingroup_hdl, domain_hdl, "grid_N")
[9984]	593	CALL set_grid("N", glamt, gphit, .TRUE., ld_rstr)
[9367]	594
	595	CALL xios_get_handle("axis_definition",axisgroup_hdl)
	596	CALL xios_add_child(axisgroup_hdl, axis_hdl, "nav_lev")
	597	!AGRIF fails to compile when unit= is in call to xios_set_axis_attr
	598	! CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels", unit="m", positive="down")
	599	CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels in meters", positive="down")
	600	CALL iom_set_axis_attr( "nav_lev", paxis = gdept_1d )
[12950]	601	#if defined key_si3
	602	CALL xios_add_child(axisgroup_hdl, axis_hdl, "numcat")
	603	CALL iom_set_axis_attr( "numcat", (/ (REAL(ji,wp), ji=1,jpl) /) )
	604	#endif
[9367]	605
	606	CALL xios_get_handle("scalar_definition", scalargroup_hdl)
	607	CALL xios_add_child(scalargroup_hdl, scalar_hdl, "grid_scalar")
	608	#endif
	609	END SUBROUTINE iom_set_rst_context
	610
[4152]	611	SUBROUTINE iom_swap( cdname )
[1793]	612	!!---------------------------------------------------------------------
	613	!! * SUBROUTINE iom_swap *
	614	!!
	615	!! ** Purpose : swap context between different agrif grid for xmlio_server
	616	!!---------------------------------------------------------------------
[4152]	617	CHARACTER(len=*), INTENT(in) :: cdname
[1793]	618	#if defined key_iomput
[3695]	619	TYPE(xios_context) :: nemo_hdl
[12961]	620	IF(lwp) write(numout, *) 'SWAP TO: ', TRIM(cdname),' AGRIF: ', TRIM(Agrif_CFixed())
[4152]	621	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
	622	CALL xios_get_handle(TRIM(cdname),nemo_hdl)
	623	ELSE
	624	CALL xios_get_handle(TRIM(Agrif_CFixed())//"_"//TRIM(cdname),nemo_hdl)
	625	ENDIF
	626	!
	627	CALL xios_set_current_context(nemo_hdl)
[1793]	628	#endif
[4152]	629	!
[1793]	630	END SUBROUTINE iom_swap
	631
	632
[12649]	633	SUBROUTINE iom_open( cdname, kiomid, ldwrt, kdom, ldstop, ldiof, kdlev, cdcomp )
[544]	634	!!---------------------------------------------------------------------
	635	!! * SUBROUTINE iom_open *
	636	!!
	637	!! ** Purpose : open an input file (return 0 if not found)
	638	!!---------------------------------------------------------------------
	639	CHARACTER(len=*), INTENT(in ) :: cdname ! File name
	640	INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
	641	LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
	642	INTEGER , INTENT(in ), OPTIONAL :: kdom ! Type of domain to be written (default = jpdom_local_noovlap)
[679]	643	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
[1319]	644	LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
[9019]	645	INTEGER , INTENT(in ), OPTIONAL :: kdlev ! number of vertical levels
[12649]	646	CHARACTER(len=3), INTENT(in ), OPTIONAL :: cdcomp ! name of component calling iom_nf90_open
[9019]	647	!
[4148]	648	CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
	649	CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
[6140]	650	CHARACTER(LEN=10) :: clsuffix ! ".nc"
[550]	651	CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
[4148]	652	CHARACTER(LEN=256) :: clinfo ! info character
[544]	653	LOGICAL :: llok ! check the existence
[679]	654	LOGICAL :: llwrt ! local definition of ldwrt
[1200]	655	LOGICAL :: llnoov ! local definition to read overlap
[679]	656	LOGICAL :: llstop ! local definition of ldstop
[1319]	657	LOGICAL :: lliof ! local definition of ldiof
[544]	658	INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
	659	INTEGER :: iln, ils ! lengths of character
	660	INTEGER :: idom ! type of domain
	661	INTEGER :: istop !
	662	INTEGER, DIMENSION(2,5) :: idompar ! domain parameters:
	663	! local number of points for x,y dimensions
	664	! position of first local point for x,y dimensions
	665	! position of last local point for x,y dimensions
	666	! start halo size for x,y dimensions
	667	! end halo size for x,y dimensions
	668	!---------------------------------------------------------------------
	669	! Initializations and control
	670	! =============
[1341]	671	kiomid = -1
[544]	672	clinfo = ' iom_open ~~~ '
	673	istop = nstop
	674	! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
	675	! (could be done when defining iom_file in f95 but not in f90)
[1441]	676	IF( Agrif_Root() ) THEN
	677	IF( iom_open_init == 0 ) THEN
	678	iom_file(:)%nfid = 0
	679	iom_open_init = 1
	680	ENDIF
[1409]	681	ENDIF
[544]	682	! do we read or write the file?
	683	IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
	684	ELSE ; llwrt = .FALSE.
	685	ENDIF
[679]	686	! do we call ctl_stop if we try to open a non-existing file in read mode?
	687	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	688	ELSE ; llstop = .TRUE.
	689	ENDIF
[1319]	690	! are we using interpolation on the fly?
	691	IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
	692	ELSE ; lliof = .FALSE.
	693	ENDIF
[1200]	694	! do we read the overlap
	695	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[10016]	696	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	697	! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
	698	! =============
	699	clname = trim(cdname)
[1319]	700	IF ( .NOT. Agrif_Root() .AND. .NOT. lliof ) THEN
[12377]	701	iln = INDEX(clname,'/')
[1200]	702	cltmpn = clname(1:iln)
	703	clname = clname(iln+1:LEN_TRIM(clname))
	704	clname=TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	705	ENDIF
[544]	706	! which suffix should we use?
[10425]	707	clsuffix = '.nc'
[544]	708	! Add the suffix if needed
	709	iln = LEN_TRIM(clname)
	710	ils = LEN_TRIM(clsuffix)
[742]	711	IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
	712	& clname = TRIM(clname)//TRIM(clsuffix)
[544]	713	cltmpn = clname ! store this name
	714	! try to find if the file to be opened already exist
	715	! =============
	716	INQUIRE( FILE = clname, EXIST = llok )
	717	IF( .NOT.llok ) THEN
	718	! we try to add the cpu number to the name
[6140]	719	WRITE(clcpu,*) narea-1
	720
[544]	721	clcpu = TRIM(ADJUSTL(clcpu))
[679]	722	iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
[544]	723	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	724	icnt = 0
	725	INQUIRE( FILE = clname, EXIST = llok )
	726	! we try different formats for the cpu number by adding 0
	727	DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
	728	clcpu = "0"//trim(clcpu)
	729	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	730	INQUIRE( FILE = clname, EXIST = llok )
	731	icnt = icnt + 1
	732	END DO
[9367]	733	ELSE
	734	lxios_sini = .TRUE.
[544]	735	ENDIF
[679]	736	IF( llwrt ) THEN
	737	! check the domain definition
	738	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	739	! idom = jpdom_local_noovlap ! default definition
[1200]	740	IF( llnoov ) THEN ; idom = jpdom_local_noovlap ! default definition
	741	ELSE ; idom = jpdom_local_full ! default definition
[679]	742	ENDIF
	743	IF( PRESENT(kdom) ) idom = kdom
	744	! create the domain informations
	745	! =============
	746	SELECT CASE (idom)
	747	CASE (jpdom_local_full)
	748	idompar(:,1) = (/ jpi , jpj /)
	749	idompar(:,2) = (/ nimpp , njmpp /)
	750	idompar(:,3) = (/ nimpp + jpi - 1 , njmpp + jpj - 1 /)
	751	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	752	idompar(:,5) = (/ jpi - nlei , jpj - nlej /)
	753	CASE (jpdom_local_noextra)
	754	idompar(:,1) = (/ nlci , nlcj /)
	755	idompar(:,2) = (/ nimpp , njmpp /)
	756	idompar(:,3) = (/ nimpp + nlci - 1, njmpp + nlcj - 1 /)
	757	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	758	idompar(:,5) = (/ nlci - nlei , nlcj - nlej /)
	759	CASE (jpdom_local_noovlap)
	760	idompar(:,1) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	761	idompar(:,2) = (/ nimpp + nldi - 1, njmpp + nldj - 1 /)
	762	idompar(:,3) = (/ nimpp + nlei - 1, njmpp + nlej - 1 /)
	763	idompar(:,4) = (/ 0 , 0 /)
	764	idompar(:,5) = (/ 0 , 0 /)
	765	CASE DEFAULT
	766	CALL ctl_stop( TRIM(clinfo), 'wrong value of kdom, only jpdom_local* cases are accepted' )
	767	END SELECT
	768	ENDIF
[6140]	769	! Open the NetCDF file
[544]	770	! =============
	771	! do we have some free file identifier?
	772	IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
[679]	773	& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
	774	! if no file was found...
	775	IF( .NOT. llok ) THEN
	776	IF( .NOT. llwrt ) THEN ! we are in read mode
	777	IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
	778	ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	779	ENDIF
	780	ELSE ! we are in write mode so we
	781	clname = cltmpn ! get back the file name without the cpu number
	782	ENDIF
[2586]	783	ELSE
	784	IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
	785	CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
	786	istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
[4650]	787	ELSEIF( llwrt ) THEN ! the file exists and we are in write mode with permission to
	788	clname = cltmpn ! overwrite so get back the file name without the cpu number
[2586]	789	ENDIF
[679]	790	ENDIF
[544]	791	IF( istop == nstop ) THEN ! no error within this routine
[12649]	792	CALL iom_nf90_open( clname, kiomid, llwrt, llok, idompar, kdlev = kdlev, cdcomp = cdcomp )
[544]	793	ENDIF
	794	!
	795	END SUBROUTINE iom_open
	796
	797
	798	SUBROUTINE iom_close( kiomid )
	799	!!--------------------------------------------------------------------
	800	!! * SUBROUTINE iom_close *
	801	!!
	802	!! ** Purpose : close an input file, or all files opened by iom
	803	!!--------------------------------------------------------------------
[1131]	804	INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
	805	! ! return 0 when file is properly closed
	806	! ! No argument: all files opened by iom are closed
[544]	807
	808	INTEGER :: jf ! dummy loop indices
	809	INTEGER :: i_s, i_e ! temporary integer
	810	CHARACTER(LEN=100) :: clinfo ! info character
	811	!---------------------------------------------------------------------
	812	!
[12283]	813	IF( iom_open_init == 0 ) RETURN ! avoid to use iom_file(jf)%nfid that us not yet initialized
	814	!
[544]	815	clinfo = ' iom_close ~~~ '
	816	IF( PRESENT(kiomid) ) THEN
	817	i_s = kiomid
	818	i_e = kiomid
	819	ELSE
	820	i_s = 1
	821	i_e = jpmax_files
	822	ENDIF
	823
	824	IF( i_s > 0 ) THEN
	825	DO jf = i_s, i_e
	826	IF( iom_file(jf)%nfid > 0 ) THEN
[10425]	827	CALL iom_nf90_close( jf )
[1131]	828	iom_file(jf)%nfid = 0 ! free the id
	829	IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
[679]	830	IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
[544]	831	ELSEIF( PRESENT(kiomid) ) THEN
	832	WRITE(ctmp1,*) '--->', kiomid
	833	CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
	834	ENDIF
	835	END DO
	836	ENDIF
	837	!
	838	END SUBROUTINE iom_close
	839
	840
[11536]	841	FUNCTION iom_varid ( kiomid, cdvar, kdimsz, kndims, lduld, ldstop )
[544]	842	!!-----------------------------------------------------------------------
	843	!! * FUNCTION iom_varid *
	844	!!
	845	!! ** Purpose : get the id of a variable in a file (return 0 if not found)
	846	!!-----------------------------------------------------------------------
	847	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	848	CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
[9540]	849	INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of each dimension
[11536]	850	INTEGER , INTENT( out), OPTIONAL :: kndims ! number of dimensions
	851	LOGICAL , INTENT( out), OPTIONAL :: lduld ! true if the last dimension is unlimited (time)
[745]	852	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
[544]	853	!
	854	INTEGER :: iom_varid, iiv, i_nvd
	855	LOGICAL :: ll_fnd
	856	CHARACTER(LEN=100) :: clinfo ! info character
[745]	857	LOGICAL :: llstop ! local definition of ldstop
[544]	858	!!-----------------------------------------------------------------------
	859	iom_varid = 0 ! default definition
[745]	860	! do we call ctl_stop if we look for non-existing variable?
	861	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	862	ELSE ; llstop = .TRUE.
	863	ENDIF
[544]	864	!
	865	IF( kiomid > 0 ) THEN
[679]	866	clinfo = 'iom_varid, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(cdvar)
[544]	867	IF( iom_file(kiomid)%nfid == 0 ) THEN
	868	CALL ctl_stop( trim(clinfo), 'the file is not open' )
	869	ELSE
	870	ll_fnd = .FALSE.
	871	iiv = 0
	872	!
	873	DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
	874	iiv = iiv + 1
	875	ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
	876	END DO
	877	!
	878	IF( .NOT.ll_fnd ) THEN
	879	iiv = iiv + 1
	880	IF( iiv <= jpmax_vars ) THEN
[11536]	881	iom_varid = iom_nf90_varid( kiomid, cdvar, iiv, kdimsz, kndims, lduld )
[544]	882	ELSE
	883	CALL ctl_stop( trim(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
[10425]	884	& 'increase the parameter jpmax_vars')
[544]	885	ENDIF
[745]	886	IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
[544]	887	ELSE
	888	iom_varid = iiv
	889	IF( PRESENT(kdimsz) ) THEN
	890	i_nvd = iom_file(kiomid)%ndims(iiv)
[9540]	891	IF( i_nvd <= size(kdimsz) ) THEN
	892	kdimsz(1:i_nvd) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
[544]	893	ELSE
	894	WRITE(ctmp1,*) i_nvd, size(kdimsz)
	895	CALL ctl_stop( trim(clinfo), 'error in kdimsz size'//trim(ctmp1) )
	896	ENDIF
	897	ENDIF
[4205]	898	IF( PRESENT(kndims) ) kndims = iom_file(kiomid)%ndims(iiv)
[11536]	899	IF( PRESENT( lduld) ) lduld = iom_file(kiomid)%luld( iiv)
[544]	900	ENDIF
	901	ENDIF
	902	ENDIF
	903	!
	904	END FUNCTION iom_varid
	905
	906
	907	!!----------------------------------------------------------------------
	908	!! INTERFACE iom_get
	909	!!----------------------------------------------------------------------
[9367]	910	SUBROUTINE iom_g0d( kiomid, cdvar, pvar, ktime, ldxios )
[544]	911	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	912	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	913	REAL(wp) , INTENT( out) :: pvar ! read field
[4245]	914	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
[9367]	915	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use xios to read restart
[544]	916	!
[4245]	917	INTEGER :: idvar ! variable id
	918	INTEGER :: idmspc ! number of spatial dimensions
	919	INTEGER , DIMENSION(1) :: itime ! record number
	920	CHARACTER(LEN=100) :: clinfo ! info character
	921	CHARACTER(LEN=100) :: clname ! file name
	922	CHARACTER(LEN=1) :: cldmspc !
[9367]	923	LOGICAL :: llxios
[544]	924	!
[9367]	925	llxios = .FALSE.
	926	IF( PRESENT(ldxios) ) llxios = ldxios
	927
	928	IF(.NOT.llxios) THEN ! read data using default library
	929	itime = 1
	930	IF( PRESENT(ktime) ) itime = ktime
	931	!
	932	clname = iom_file(kiomid)%name
	933	clinfo = ' iom_g0d, file: '//trim(clname)//', var: '//trim(cdvar)
	934	!
	935	IF( kiomid > 0 ) THEN
	936	idvar = iom_varid( kiomid, cdvar )
	937	IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
	938	idmspc = iom_file ( kiomid )%ndims( idvar )
	939	IF( iom_file(kiomid)%luld(idvar) ) idmspc = idmspc - 1
	940	WRITE(cldmspc , fmt='(i1)') idmspc
	941	IF( idmspc > 0 ) CALL ctl_stop( TRIM(clinfo), 'When reading to a 0D array, we do not accept data', &
	942	& 'with 1 or more spatial dimensions: '//cldmspc//' were found.' , &
	943	& 'Use ncwa -a to suppress the unnecessary dimensions' )
[10425]	944	CALL iom_nf90_get( kiomid, idvar, pvar, itime )
[9367]	945	ENDIF
[679]	946	ENDIF
[9367]	947	ELSE
[9535]	948	#if defined key_iomput
[9367]	949	IF(lwp) WRITE(numout,*) 'XIOS RST READ (0D): ', trim(cdvar)
	950	CALL xios_recv_field( trim(cdvar), pvar)
[9535]	951	#else
[10425]	952	WRITE(ctmp1,*) 'Can not use XIOS in iom_g0d, file: '//trim(clname)//', var:'//trim(cdvar)
	953	CALL ctl_stop( 'iom_g0d', ctmp1 )
[9535]	954	#endif
[679]	955	ENDIF
[550]	956	END SUBROUTINE iom_g0d
[544]	957
[9367]	958	SUBROUTINE iom_g1d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, ldxios )
[544]	959	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	960	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	961	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	962	REAL(wp) , INTENT( out), DIMENSION(:) :: pvar ! read field
	963	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	964	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
	965	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
[9367]	966	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	967	!
[679]	968	IF( kiomid > 0 ) THEN
	969	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r1d=pvar, &
[9367]	970	& ktime=ktime, kstart=kstart, kcount=kcount, &
	971	& ldxios=ldxios )
[679]	972	ENDIF
[550]	973	END SUBROUTINE iom_g1d
[544]	974
[9367]	975	SUBROUTINE iom_g2d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios)
[544]	976	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	977	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	978	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	979	REAL(wp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
	980	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	981	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kstart ! start axis position of the reading
	982	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kcount ! number of points in each axis
[5118]	983	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	984	! look for and use a file attribute
	985	! called open_ocean_jstart to set the start
	986	! value for the 2nd dimension (netcdf only)
[9367]	987	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	988	!
[679]	989	IF( kiomid > 0 ) THEN
	990	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r2d=pvar, &
[5118]	991	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	992	& lrowattr=lrowattr, ldxios=ldxios)
[679]	993	ENDIF
[550]	994	END SUBROUTINE iom_g2d
[544]	995
[9367]	996	SUBROUTINE iom_g3d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios )
[544]	997	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	998	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	999	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	1000	REAL(wp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
	1001	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	1002	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kstart ! start axis position of the reading
	1003	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kcount ! number of points in each axis
[5118]	1004	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	1005	! look for and use a file attribute
	1006	! called open_ocean_jstart to set the start
	1007	! value for the 2nd dimension (netcdf only)
[9367]	1008	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	1009	!
[679]	1010	IF( kiomid > 0 ) THEN
	1011	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r3d=pvar, &
[5118]	1012	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	1013	& lrowattr=lrowattr, ldxios=ldxios )
[679]	1014	ENDIF
[550]	1015	END SUBROUTINE iom_g3d
[544]	1016	!!----------------------------------------------------------------------
	1017
	1018	SUBROUTINE iom_get_123d( kiomid, kdom , cdvar , &
[679]	1019	& pv_r1d, pv_r2d, pv_r3d, &
[5118]	1020	& ktime , kstart, kcount, &
[9367]	1021	& lrowattr, ldxios )
[544]	1022	!!-----------------------------------------------------------------------
	1023	!! * ROUTINE iom_get_123d *
	1024	!!
	1025	!! ** Purpose : read a 1D/2D/3D variable
	1026	!!
	1027	!! ** Method : read ONE record at each CALL
	1028	!!-----------------------------------------------------------------------
	1029	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1030	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	1031	CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
	1032	REAL(wp), DIMENSION(:) , INTENT( out), OPTIONAL :: pv_r1d ! read field (1D case)
	1033	REAL(wp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pv_r2d ! read field (2D case)
	1034	REAL(wp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pv_r3d ! read field (3D case)
	1035	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
	1036	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
	1037	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
[5118]	1038	LOGICAL , INTENT(in ), OPTIONAL :: lrowattr ! logical flag telling iom_get to
[9367]	1039	! look for and use a file attribute
	1040	! called open_ocean_jstart to set the start
	1041	! value for the 2nd dimension (netcdf only)
	1042	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use XIOS to read restart
[544]	1043	!
[9367]	1044	LOGICAL :: llxios ! local definition for XIOS read
[1200]	1045	LOGICAL :: llnoov ! local definition to read overlap
[5118]	1046	LOGICAL :: luse_jattr ! local definition to read open_ocean_jstart file attribute
	1047	INTEGER :: jstartrow ! start point for 2nd dimension optionally set by file attribute
[544]	1048	INTEGER :: jl ! loop on number of dimension
	1049	INTEGER :: idom ! type of domain
	1050	INTEGER :: idvar ! id of the variable
	1051	INTEGER :: inbdim ! number of dimensions of the variable
	1052	INTEGER :: idmspc ! number of spatial dimensions
	1053	INTEGER :: itime ! record number
	1054	INTEGER :: istop ! temporary value of nstop
[679]	1055	INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
	1056	INTEGER :: ji, jj ! loop counters
[5118]	1057	INTEGER :: irankpv !
[679]	1058	INTEGER :: ind1, ind2 ! substring index
[544]	1059	INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
	1060	INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
	1061	INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
[679]	1062	INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
[544]	1063	REAL(wp) :: zscf, zofs ! sacle_factor and add_offset
	1064	INTEGER :: itmp ! temporary integer
[4148]	1065	CHARACTER(LEN=256) :: clinfo ! info character
	1066	CHARACTER(LEN=256) :: clname ! file name
[679]	1067	CHARACTER(LEN=1) :: clrankpv, cldmspc !
[6140]	1068	LOGICAL :: ll_depth_spec ! T => if kstart, kcount present then only use values for 3rd spatial dimension.
[9019]	1069	INTEGER :: inlev ! number of levels for 3D data
[9367]	1070	REAL(wp) :: gma, gmi
[544]	1071	!---------------------------------------------------------------------
	1072	!
[9019]	1073	inlev = -1
	1074	IF( PRESENT(pv_r3d) ) inlev = SIZE(pv_r3d, 3)
[9367]	1075	!
	1076	llxios = .FALSE.
	1077	if(PRESENT(ldxios)) llxios = ldxios
	1078	idvar = iom_varid( kiomid, cdvar )
[544]	1079	idom = kdom
[9367]	1080	!
	1081	IF(.NOT.llxios) THEN
	1082	clname = iom_file(kiomid)%name ! esier to read
	1083	clinfo = ' iom_get_123d, file: '//trim(clname)//', var: '//trim(cdvar)
	1084	! local definition of the domain ?
	1085	! do we read the overlap
	1086	! ugly patch SM+JMM+RB to overwrite global definition in some cases
	1087	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
	1088	! check kcount and kstart optionals parameters...
	1089	IF( PRESENT(kcount) .AND. (.NOT. PRESENT(kstart)) ) CALL ctl_stop(trim(clinfo), 'kcount present needs kstart present')
	1090	IF( PRESENT(kstart) .AND. (.NOT. PRESENT(kcount)) ) CALL ctl_stop(trim(clinfo), 'kstart present needs kcount present')
	1091	IF( PRESENT(kstart) .AND. idom /= jpdom_unknown .AND. idom /= jpdom_autoglo_xy ) &
	1092	& CALL ctl_stop(trim(clinfo), 'kstart present needs kdom = jpdom_unknown or kdom = jpdom_autoglo_xy')
[544]	1093
[9367]	1094	luse_jattr = .false.
	1095	IF( PRESENT(lrowattr) ) THEN
	1096	IF( lrowattr .AND. idom /= jpdom_data ) CALL ctl_stop(trim(clinfo), 'lrowattr present and true needs kdom = jpdom_data')
	1097	IF( lrowattr .AND. idom == jpdom_data ) luse_jattr = .true.
[6140]	1098	ENDIF
[679]	1099
[9367]	1100	! Search for the variable in the data base (eventually actualize data)
	1101	istop = nstop
[544]	1102	!
[9367]	1103	IF( idvar > 0 ) THEN
	1104	! to write iom_file(kiomid)%dimsz in a shorter way !
	1105	idimsz(:) = iom_file(kiomid)%dimsz(:, idvar)
	1106	inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
	1107	idmspc = inbdim ! number of spatial dimensions in the file
	1108	IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
	1109	IF( idmspc > 3 ) CALL ctl_stop(trim(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
	1110	!
	1111	! update idom definition...
	1112	! Identify the domain in case of jpdom_auto(glo/dta) definition
	1113	IF( idom == jpdom_autoglo_xy ) THEN
	1114	ll_depth_spec = .TRUE.
	1115	idom = jpdom_autoglo
	1116	ELSE
	1117	ll_depth_spec = .FALSE.
	1118	ENDIF
	1119	IF( idom == jpdom_autoglo .OR. idom == jpdom_autodta ) THEN
	1120	IF( idom == jpdom_autoglo ) THEN ; idom = jpdom_global
	1121	ELSE ; idom = jpdom_data
[544]	1122	ENDIF
[9367]	1123	ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
	1124	ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
	1125	IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
	1126	ENDIF
	1127	! Identify the domain in case of jpdom_local definition
	1128	IF( idom == jpdom_local ) THEN
	1129	IF( idimsz(1) == jpi .AND. idimsz(2) == jpj ) THEN ; idom = jpdom_local_full
	1130	ELSEIF( idimsz(1) == nlci .AND. idimsz(2) == nlcj ) THEN ; idom = jpdom_local_noextra
	1131	ELSEIF( idimsz(1) == (nlei - nldi + 1) .AND. idimsz(2) == (nlej - nldj + 1) ) THEN ; idom = jpdom_local_noovlap
	1132	ELSE ; CALL ctl_stop( trim(clinfo), 'impossible to identify the local domain' )
	1133	ENDIF
	1134	ENDIF
	1135	!
	1136	! check the consistency between input array and data rank in the file
	1137	!
	1138	! initializations
	1139	itime = 1
	1140	IF( PRESENT(ktime) ) itime = ktime
	1141	!
	1142	irankpv = 1 * COUNT( (/PRESENT(pv_r1d)/) ) + 2 * COUNT( (/PRESENT(pv_r2d)/) ) + 3 * COUNT( (/PRESENT(pv_r3d)/) )
	1143	WRITE(clrankpv, fmt='(i1)') irankpv
	1144	WRITE(cldmspc , fmt='(i1)') idmspc
	1145	!
[12377]	1146	!!GS: we consider 2D data as 3D data with vertical dim size = 1
	1147	!IF( idmspc < irankpv ) THEN
	1148	! CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
	1149	! & 'it is impossible to read a '//clrankpv//'D array from this file...' )
	1150	!ELSEIF( idmspc == irankpv ) THEN
	1151	IF( idmspc == irankpv ) THEN
[9367]	1152	IF( PRESENT(pv_r1d) .AND. idom /= jpdom_unknown ) &
	1153	& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
	1154	ELSEIF( idmspc > irankpv ) THEN
	1155	IF( PRESENT(pv_r2d) .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
	1156	CALL ctl_warn( trim(clinfo), '2D array but 3 spatial dimensions for the data...' , &
	1157	& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
	1158	& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
	1159	idmspc = idmspc - 1
	1160	ELSE
	1161	CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,' , &
	1162	& 'we do not accept data with '//cldmspc//' spatial dimensions', &
	1163	& 'Use ncwa -a to suppress the unnecessary dimensions' )
	1164	ENDIF
	1165	ENDIF
	1166	!
	1167	! definition of istart and icnt
	1168	!
	1169	icnt (:) = 1
	1170	istart(:) = 1
	1171	istart(idmspc+1) = itime
	1172
	1173	IF( PRESENT(kstart) .AND. .NOT. ll_depth_spec ) THEN
	1174	istart(1:idmspc) = kstart(1:idmspc)
	1175	icnt (1:idmspc) = kcount(1:idmspc)
	1176	ELSE
	1177	IF(idom == jpdom_unknown ) THEN
	1178	icnt(1:idmspc) = idimsz(1:idmspc)
	1179	ELSE
	1180	IF( .NOT. PRESENT(pv_r1d) ) THEN ! not a 1D array
	1181	IF( idom == jpdom_data ) THEN
	1182	jstartrow = 1
	1183	IF( luse_jattr ) THEN
	1184	CALL iom_getatt(kiomid, 'open_ocean_jstart', jstartrow ) ! -999 is returned if the attribute is not found
	1185	jstartrow = MAX(1,jstartrow)
	1186	ENDIF
	1187	istart(1:2) = (/ mig(1), mjg(1) + jstartrow - 1 /) ! icnt(1:2) done below
	1188	ELSEIF( idom == jpdom_global ) THEN ; istart(1:2) = (/ nimpp , njmpp /) ! icnt(1:2) done below
[5118]	1189	ENDIF
[9367]	1190	! we do not read the overlap -> we start to read at nldi, nldj
[679]	1191	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1192	! IF( idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[9367]	1193	IF( llnoov .AND. idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[679]	1194	! we do not read the overlap and the extra-halos -> from nldi to nlei and from nldj to nlej
	1195	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1196	! icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
[9367]	1197	IF( llnoov ) THEN ; icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	1198	ELSE ; icnt(1:2) = (/ nlci , nlcj /)
[544]	1199	ENDIF
[9367]	1200	IF( PRESENT(pv_r3d) ) THEN
	1201	IF( idom == jpdom_data ) THEN ; icnt(3) = inlev
	1202	ELSEIF( ll_depth_spec .AND. PRESENT(kstart) ) THEN ; istart(3) = kstart(3) ; icnt(3) = kcount(3)
	1203	ELSE ; icnt(3) = inlev
	1204	ENDIF
	1205	ENDIF
[544]	1206	ENDIF
	1207	ENDIF
[679]	1208	ENDIF
[544]	1209
[9367]	1210	! check that istart and icnt can be used with this file
	1211	!-
	1212	DO jl = 1, jpmax_dims
	1213	itmp = istart(jl)+icnt(jl)-1
	1214	IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
	1215	WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
	1216	WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
	1217	CALL ctl_stop( trim(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
	1218	ENDIF
	1219	END DO
[544]	1220
[9367]	1221	! check that icnt matches the input array
	1222	!-
	1223	IF( idom == jpdom_unknown ) THEN
	1224	IF( irankpv == 1 ) ishape(1:1) = SHAPE(pv_r1d)
	1225	IF( irankpv == 2 ) ishape(1:2) = SHAPE(pv_r2d)
	1226	IF( irankpv == 3 ) ishape(1:3) = SHAPE(pv_r3d)
	1227	ctmp1 = 'd'
	1228	ELSE
	1229	IF( irankpv == 2 ) THEN
[679]	1230	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1231	! ishape(1:2) = SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1 = 'd(nldi:nlei,nldj:nlej)'
[9367]	1232	IF( llnoov ) THEN ; ishape(1:2)=SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1='d(nldi:nlei,nldj:nlej)'
	1233	ELSE ; ishape(1:2)=SHAPE(pv_r2d(1 :nlci,1 :nlcj )) ; ctmp1='d(1:nlci,1:nlcj)'
	1234	ENDIF
[544]	1235	ENDIF
[9367]	1236	IF( irankpv == 3 ) THEN
[679]	1237	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1238	! ishape(1:3) = SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1 = 'd(nldi:nlei,nldj:nlej,:)'
[9367]	1239	IF( llnoov ) THEN ; ishape(1:3)=SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1='d(nldi:nlei,nldj:nlej,:)'
	1240	ELSE ; ishape(1:3)=SHAPE(pv_r3d(1 :nlci,1 :nlcj,:)) ; ctmp1='d(1:nlci,1:nlcj,:)'
	1241	ENDIF
[544]	1242	ENDIF
[679]	1243	ENDIF
	1244
[9367]	1245	DO jl = 1, irankpv
	1246	WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
	1247	IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pv_r'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
	1248	END DO
[679]	1249
[9367]	1250	ENDIF
[544]	1251
[9367]	1252	! read the data
	1253	!-
	1254	IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
	1255	!
[679]	1256	! find the right index of the array to be read
	1257	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1258	! IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1259	! ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1260	! ENDIF
[9367]	1261	IF( llnoov ) THEN
	1262	IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1263	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1264	ENDIF
	1265	ELSE
	1266	IF( idom /= jpdom_unknown ) THEN ; ix1 = 1 ; ix2 = nlci ; iy1 = 1 ; iy2 = nlcj
	1267	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1268	ENDIF
[679]	1269	ENDIF
	1270
[10425]	1271	CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, pv_r1d, pv_r2d, pv_r3d )
[679]	1272
[9367]	1273	IF( istop == nstop ) THEN ! no additional errors until this point...
	1274	IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i6,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
	1275
	1276	!--- overlap areas and extra hallows (mpp)
	1277	IF( PRESENT(pv_r2d) .AND. idom /= jpdom_unknown ) THEN
[11536]	1278	CALL lbc_lnk( 'iom', pv_r2d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1279	ELSEIF( PRESENT(pv_r3d) .AND. idom /= jpdom_unknown ) THEN
	1280	! this if could be simplified with the new lbc_lnk that works with any size of the 3rd dimension
	1281	IF( icnt(3) == inlev ) THEN
[11536]	1282	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1283	ELSE ! put some arbitrary value (a call to lbc_lnk will be done later...)
	1284	DO jj = nlcj+1, jpj ; pv_r3d(1:nlci, jj, :) = pv_r3d(1:nlci, nlej, :) ; END DO
	1285	DO ji = nlci+1, jpi ; pv_r3d(ji , : , :) = pv_r3d(nlei , : , :) ; END DO
	1286	ENDIF
[679]	1287	ENDIF
[9367]	1288	!
	1289	ELSE
	1290	! return if istop == nstop is false
	1291	RETURN
[679]	1292	ENDIF
[9367]	1293	ELSE
	1294	! return if statment idvar > 0 .AND. istop == nstop is false
	1295	RETURN
	1296	ENDIF
	1297	!
	1298	ELSE ! read using XIOS. Only if KEY_IOMPUT is defined
	1299	#if defined key_iomput
	1300	!would be good to be able to check which context is active and swap only if current is not restart
	1301	IF( PRESENT(pv_r3d) ) THEN
[9535]	1302	pv_r3d(:, :, :) = 0.
[9367]	1303	if(lwp) write(numout,*) 'XIOS RST READ (3D): ',trim(cdvar)
	1304	CALL xios_recv_field( trim(cdvar), pv_r3d)
	1305	IF(idom /= jpdom_unknown ) then
[11536]	1306	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing)
[679]	1307	ENDIF
[9367]	1308	ELSEIF( PRESENT(pv_r2d) ) THEN
[9535]	1309	pv_r2d(:, :) = 0.
[9367]	1310	if(lwp) write(numout,*) 'XIOS RST READ (2D): ', trim(cdvar)
	1311	CALL xios_recv_field( trim(cdvar), pv_r2d)
	1312	IF(idom /= jpdom_unknown ) THEN
[11536]	1313	CALL lbc_lnk('iom', pv_r2d,'Z',-999., kfillmode = jpfillnothing)
[9367]	1314	ENDIF
	1315	ELSEIF( PRESENT(pv_r1d) ) THEN
[9535]	1316	pv_r1d(:) = 0.
[9367]	1317	if(lwp) write(numout,*) 'XIOS RST READ (1D): ', trim(cdvar)
	1318	CALL xios_recv_field( trim(cdvar), pv_r1d)
[544]	1319	ENDIF
[9367]	1320	#else
	1321	istop = istop + 1
	1322	clinfo = 'Can not use XIOS in iom_get_123d, file: '//trim(clname)//', var:'//trim(cdvar)
	1323	#endif
[544]	1324	ENDIF
[9367]	1325	!some final adjustments
	1326	! C1D case : always call lbc_lnk to replicate the central value over the whole 3X3 domain
[10425]	1327	IF( lk_c1d .AND. PRESENT(pv_r2d) ) CALL lbc_lnk( 'iom', pv_r2d,'Z',1. )
	1328	IF( lk_c1d .AND. PRESENT(pv_r3d) ) CALL lbc_lnk( 'iom', pv_r3d,'Z',1. )
[9367]	1329
	1330	!--- Apply scale_factor and offset
	1331	zscf = iom_file(kiomid)%scf(idvar) ! scale factor
	1332	zofs = iom_file(kiomid)%ofs(idvar) ! offset
	1333	IF( PRESENT(pv_r1d) ) THEN
	1334	IF( zscf /= 1. ) pv_r1d(:) = pv_r1d(:) * zscf
	1335	IF( zofs /= 0. ) pv_r1d(:) = pv_r1d(:) + zofs
	1336	ELSEIF( PRESENT(pv_r2d) ) THEN
	1337	IF( zscf /= 1.) pv_r2d(:,:) = pv_r2d(:,:) * zscf
	1338	IF( zofs /= 0.) pv_r2d(:,:) = pv_r2d(:,:) + zofs
	1339	ELSEIF( PRESENT(pv_r3d) ) THEN
	1340	IF( zscf /= 1.) pv_r3d(:,:,:) = pv_r3d(:,:,:) * zscf
	1341	IF( zofs /= 0.) pv_r3d(:,:,:) = pv_r3d(:,:,:) + zofs
	1342	ENDIF
[544]	1343	!
	1344	END SUBROUTINE iom_get_123d
	1345
[12276]	1346	SUBROUTINE iom_get_var( cdname, z2d)
	1347	CHARACTER(LEN=*), INTENT(in ) :: cdname
	1348	REAL(wp), DIMENSION(jpi,jpj) :: z2d
	1349	#if defined key_iomput
	1350	IF( xios_field_is_active( cdname, at_current_timestep_arg = .TRUE. ) ) THEN
	1351	z2d(:,:) = 0._wp
	1352	CALL xios_recv_field( cdname, z2d)
	1353	ENDIF
	1354	#else
	1355	IF( .FALSE. ) WRITE(numout,*) cdname, z2d ! useless test to avoid compilation warnings
	1356	#endif
	1357	END SUBROUTINE iom_get_var
[544]	1358
[12276]	1359
[10522]	1360	FUNCTION iom_getszuld ( kiomid )
	1361	!!-----------------------------------------------------------------------
	1362	!! * FUNCTION iom_getszuld *
[544]	1363	!!
[10522]	1364	!! ** Purpose : get the size of the unlimited dimension in a file
	1365	!! (return -1 if not found)
	1366	!!-----------------------------------------------------------------------
	1367	INTEGER, INTENT(in ) :: kiomid ! file Identifier
[544]	1368	!
[10522]	1369	INTEGER :: iom_getszuld
	1370	!!-----------------------------------------------------------------------
	1371	iom_getszuld = -1
[679]	1372	IF( kiomid > 0 ) THEN
[10523]	1373	IF( iom_file(kiomid)%iduld > 0 ) iom_getszuld = iom_file(kiomid)%lenuld
[544]	1374	ENDIF
[10522]	1375	END FUNCTION iom_getszuld
	1376
[544]	1377
	1378	!!----------------------------------------------------------------------
[10425]	1379	!! INTERFACE iom_chkatt
[2528]	1380	!!----------------------------------------------------------------------
[10425]	1381	SUBROUTINE iom_chkatt( kiomid, cdatt, llok, ksize, cdvar )
[2528]	1382	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1383	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
[10425]	1384	LOGICAL , INTENT( out) :: llok ! Error code
	1385	INTEGER , INTENT( out), OPTIONAL :: ksize ! Size of the attribute array
[7646]	1386	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[2528]	1387	!
	1388	IF( kiomid > 0 ) THEN
[10425]	1389	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_chkatt( kiomid, cdatt, llok, ksize=ksize, cdvar=cdvar )
[2528]	1390	ENDIF
[10425]	1391	!
	1392	END SUBROUTINE iom_chkatt
	1393
	1394	!!----------------------------------------------------------------------
	1395	!! INTERFACE iom_getatt
	1396	!!----------------------------------------------------------------------
	1397	SUBROUTINE iom_g0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1398	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1399	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1400	INTEGER , INTENT( out) :: katt0d ! read field
	1401	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1402	!
	1403	IF( kiomid > 0 ) THEN
	1404	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
	1405	ENDIF
[7646]	1406	END SUBROUTINE iom_g0d_iatt
[2528]	1407
[10425]	1408	SUBROUTINE iom_g1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1409	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1410	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1411	INTEGER, DIMENSION(:) , INTENT( out) :: katt1d ! read field
	1412	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1413	!
	1414	IF( kiomid > 0 ) THEN
[10425]	1415	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1416	ENDIF
[10425]	1417	END SUBROUTINE iom_g1d_iatt
	1418
	1419	SUBROUTINE iom_g0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1420	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1421	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1422	REAL(wp) , INTENT( out) :: patt0d ! read field
	1423	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1424	!
	1425	IF( kiomid > 0 ) THEN
	1426	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1427	ENDIF
[7646]	1428	END SUBROUTINE iom_g0d_ratt
[2528]	1429
[10425]	1430	SUBROUTINE iom_g1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1431	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1432	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1433	REAL(wp), DIMENSION(:), INTENT( out) :: patt1d ! read field
	1434	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1435	!
	1436	IF( kiomid > 0 ) THEN
[10425]	1437	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1438	ENDIF
[10425]	1439	END SUBROUTINE iom_g1d_ratt
	1440
	1441	SUBROUTINE iom_g0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1442	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1443	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1444	CHARACTER(len=*) , INTENT( out) :: cdatt0d ! read field
	1445	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1446	!
	1447	IF( kiomid > 0 ) THEN
	1448	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1449	ENDIF
[7646]	1450	END SUBROUTINE iom_g0d_catt
	1451
[10425]	1452
[2528]	1453	!!----------------------------------------------------------------------
[7646]	1454	!! INTERFACE iom_putatt
	1455	!!----------------------------------------------------------------------
[10425]	1456	SUBROUTINE iom_p0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1457	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1458	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1459	INTEGER , INTENT(in ) :: katt0d ! written field
	1460	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1461	!
	1462	IF( kiomid > 0 ) THEN
[10425]	1463	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
[7646]	1464	ENDIF
	1465	END SUBROUTINE iom_p0d_iatt
	1466
[10425]	1467	SUBROUTINE iom_p1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1468	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1469	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1470	INTEGER, DIMENSION(:) , INTENT(in ) :: katt1d ! written field
	1471	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1472	!
	1473	IF( kiomid > 0 ) THEN
[10425]	1474	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1475	ENDIF
[10425]	1476	END SUBROUTINE iom_p1d_iatt
	1477
	1478	SUBROUTINE iom_p0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1479	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1480	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1481	REAL(wp) , INTENT(in ) :: patt0d ! written field
	1482	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1483	!
	1484	IF( kiomid > 0 ) THEN
	1485	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1486	ENDIF
[7646]	1487	END SUBROUTINE iom_p0d_ratt
	1488
[10425]	1489	SUBROUTINE iom_p1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1490	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1491	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1492	REAL(wp), DIMENSION(:), INTENT(in ) :: patt1d ! written field
	1493	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1494	!
	1495	IF( kiomid > 0 ) THEN
[10425]	1496	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1497	ENDIF
[10425]	1498	END SUBROUTINE iom_p1d_ratt
	1499
	1500	SUBROUTINE iom_p0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1501	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1502	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1503	CHARACTER(len=*) , INTENT(in ) :: cdatt0d ! written field
	1504	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1505	!
	1506	IF( kiomid > 0 ) THEN
	1507	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1508	ENDIF
[7646]	1509	END SUBROUTINE iom_p0d_catt
	1510
[10425]	1511
[7646]	1512	!!----------------------------------------------------------------------
[544]	1513	!! INTERFACE iom_rstput
	1514	!!----------------------------------------------------------------------
[9367]	1515	SUBROUTINE iom_rp0d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1516	INTEGER , INTENT(in) :: kt ! ocean time-step
	1517	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1518	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1519	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[556]	1520	REAL(wp) , INTENT(in) :: pvar ! written field
[544]	1521	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1522	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1523	LOGICAL :: llx ! local xios write flag
[544]	1524	INTEGER :: ivid ! variable id
[9367]	1525
	1526	llx = .FALSE.
	1527	IF(PRESENT(ldxios)) llx = ldxios
	1528	IF( llx ) THEN
	1529	#ifdef key_iomput
	1530	IF( kt == kwrite ) THEN
	1531	IF(lwp) write(numout,*) 'RESTART: write (XIOS 0D) ',trim(cdvar)
	1532	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1533	ELSE
	1534	IF(lwp) write(numout,*) 'RESTART: define (XIOS 0D) ',trim(cdvar)
	1535	CALL iom_set_rstw_active( trim(cdvar), rd0 = pvar )
[9367]	1536	ENDIF
	1537	#endif
	1538	ELSE
	1539	IF( kiomid > 0 ) THEN
	1540	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1541	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1542	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
[9367]	1543	ENDIF
[679]	1544	ENDIF
	1545	ENDIF
[550]	1546	END SUBROUTINE iom_rp0d
[544]	1547
[9367]	1548	SUBROUTINE iom_rp1d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1549	INTEGER , INTENT(in) :: kt ! ocean time-step
	1550	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1551	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1552	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1553	REAL(wp) , INTENT(in), DIMENSION( :) :: pvar ! written field
[544]	1554	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1555	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1556	LOGICAL :: llx ! local xios write flag
[544]	1557	INTEGER :: ivid ! variable id
[9367]	1558
	1559	llx = .FALSE.
	1560	IF(PRESENT(ldxios)) llx = ldxios
	1561	IF( llx ) THEN
	1562	#ifdef key_iomput
	1563	IF( kt == kwrite ) THEN
	1564	IF(lwp) write(numout,*) 'RESTART: write (XIOS 1D) ',trim(cdvar)
	1565	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1566	ELSE
	1567	IF(lwp) write(numout,*) 'RESTART: define (XIOS 1D) ',trim(cdvar)
	1568	CALL iom_set_rstw_active( trim(cdvar), rd1 = pvar )
[9367]	1569	ENDIF
	1570	#endif
	1571	ELSE
	1572	IF( kiomid > 0 ) THEN
	1573	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1574	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1575	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
[9367]	1576	ENDIF
[679]	1577	ENDIF
	1578	ENDIF
[550]	1579	END SUBROUTINE iom_rp1d
[544]	1580
[9367]	1581	SUBROUTINE iom_rp2d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1582	INTEGER , INTENT(in) :: kt ! ocean time-step
	1583	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1584	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1585	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1586	REAL(wp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
[544]	1587	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1588	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1589	LOGICAL :: llx
[544]	1590	INTEGER :: ivid ! variable id
[9367]	1591
	1592	llx = .FALSE.
	1593	IF(PRESENT(ldxios)) llx = ldxios
	1594	IF( llx ) THEN
	1595	#ifdef key_iomput
	1596	IF( kt == kwrite ) THEN
	1597	IF(lwp) write(numout,*) 'RESTART: write (XIOS 2D) ',trim(cdvar)
	1598	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1599	ELSE
	1600	IF(lwp) write(numout,*) 'RESTART: define (XIOS 2D) ',trim(cdvar)
	1601	CALL iom_set_rstw_active( trim(cdvar), rd2 = pvar )
[9367]	1602	ENDIF
	1603	#endif
	1604	ELSE
	1605	IF( kiomid > 0 ) THEN
	1606	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1607	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1608	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
[9367]	1609	ENDIF
[679]	1610	ENDIF
	1611	ENDIF
[550]	1612	END SUBROUTINE iom_rp2d
[544]	1613
[9367]	1614	SUBROUTINE iom_rp3d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1615	INTEGER , INTENT(in) :: kt ! ocean time-step
	1616	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1617	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1618	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1619	REAL(wp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
[544]	1620	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1621	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1622	LOGICAL :: llx ! local xios write flag
[544]	1623	INTEGER :: ivid ! variable id
[9367]	1624
	1625	llx = .FALSE.
	1626	IF(PRESENT(ldxios)) llx = ldxios
	1627	IF( llx ) THEN
	1628	#ifdef key_iomput
	1629	IF( kt == kwrite ) THEN
	1630	IF(lwp) write(numout,*) 'RESTART: write (XIOS 3D) ',trim(cdvar)
	1631	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1632	ELSE
	1633	IF(lwp) write(numout,*) 'RESTART: define (XIOS 3D) ',trim(cdvar)
	1634	CALL iom_set_rstw_active( trim(cdvar), rd3 = pvar )
[9367]	1635	ENDIF
	1636	#endif
	1637	ELSE
	1638	IF( kiomid > 0 ) THEN
	1639	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1640	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1641	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
[9367]	1642	ENDIF
[679]	1643	ENDIF
	1644	ENDIF
[550]	1645	END SUBROUTINE iom_rp3d
[1359]	1646
	1647
[10425]	1648	SUBROUTINE iom_delay_rst( cdaction, cdcpnt, kncid )
	1649	!!---------------------------------------------------------------------
	1650	!! Routine iom_delay_rst: used read/write restart related to mpp_delay
	1651	!!
	1652	!!---------------------------------------------------------------------
	1653	CHARACTER(len=*), INTENT(in ) :: cdaction !
	1654	CHARACTER(len=*), INTENT(in ) :: cdcpnt
	1655	INTEGER , INTENT(in ) :: kncid
	1656	!
	1657	INTEGER :: ji
	1658	INTEGER :: indim
	1659	LOGICAL :: llattexist
	1660	REAL(wp), ALLOCATABLE, DIMENSION(:) :: zreal1d
	1661	!!---------------------------------------------------------------------
	1662	!
	1663	! ===================================
	1664	IF( TRIM(cdaction) == 'READ' ) THEN ! read restart related to mpp_delay !
	1665	! ===================================
	1666	DO ji = 1, nbdelay
	1667	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1668	CALL iom_chkatt( kncid, 'DELAY_'//c_delaylist(ji), llattexist, indim )
	1669	IF( llattexist ) THEN
	1670	ALLOCATE( todelay(ji)%z1d(indim) )
	1671	CALL iom_getatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1672	ndelayid(ji) = 0 ! set to 0 to specify that the value was read in the restart
	1673	ENDIF
	1674	ENDIF
	1675	END DO
	1676	! ====================================
	1677	ELSE ! write restart related to mpp_delay !
	1678	! ====================================
	1679	DO ji = 1, nbdelay ! save only ocean delayed global communication variables
	1680	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1681	IF( ASSOCIATED(todelay(ji)%z1d) ) THEN
	1682	CALL mpp_delay_rcv(ji) ! make sure %z1d is received
	1683	CALL iom_putatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1684	ENDIF
	1685	ENDIF
	1686	END DO
	1687	!
	1688	ENDIF
	1689
	1690	END SUBROUTINE iom_delay_rst
	1691
	1692
	1693
[544]	1694	!!----------------------------------------------------------------------
[1457]	1695	!! INTERFACE iom_put
[1359]	1696	!!----------------------------------------------------------------------
[1738]	1697	SUBROUTINE iom_p0d( cdname, pfield0d )
	1698	CHARACTER(LEN=*), INTENT(in) :: cdname
	1699	REAL(wp) , INTENT(in) :: pfield0d
[11536]	1700	!! REAL(wp) , DIMENSION(jpi,jpj) :: zz ! masson
[1738]	1701	#if defined key_iomput
[11536]	1702	!!clem zz(:,:)=pfield0d
	1703	!!clem CALL xios_send_field(cdname, zz)
	1704	CALL xios_send_field(cdname, (/pfield0d/))
[1738]	1705	#else
	1706	IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
	1707	#endif
	1708	END SUBROUTINE iom_p0d
	1709
[3294]	1710	SUBROUTINE iom_p1d( cdname, pfield1d )
	1711	CHARACTER(LEN=*) , INTENT(in) :: cdname
	1712	REAL(wp), DIMENSION(:), INTENT(in) :: pfield1d
	1713	#if defined key_iomput
[3695]	1714	CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
[3294]	1715	#else
	1716	IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
	1717	#endif
	1718	END SUBROUTINE iom_p1d
	1719
[1359]	1720	SUBROUTINE iom_p2d( cdname, pfield2d )
	1721	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1722	REAL(wp), DIMENSION(:,:), INTENT(in) :: pfield2d
[1412]	1723	#if defined key_iomput
[3695]	1724	CALL xios_send_field(cdname, pfield2d)
[1520]	1725	#else
	1726	IF( .FALSE. ) WRITE(numout,*) cdname, pfield2d ! useless test to avoid compilation warnings
[1359]	1727	#endif
	1728	END SUBROUTINE iom_p2d
[544]	1729
[1359]	1730	SUBROUTINE iom_p3d( cdname, pfield3d )
	1731	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1732	REAL(wp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
[1412]	1733	#if defined key_iomput
[9019]	1734	CALL xios_send_field( cdname, pfield3d )
[1520]	1735	#else
	1736	IF( .FALSE. ) WRITE(numout,*) cdname, pfield3d ! useless test to avoid compilation warnings
[1359]	1737	#endif
	1738	END SUBROUTINE iom_p3d
[544]	1739
[12276]	1740	SUBROUTINE iom_p4d( cdname, pfield4d )
[12377]	1741	CHARACTER(LEN=*) , INTENT(in) :: cdname
[12276]	1742	REAL(wp), DIMENSION(:,:,:,:), INTENT(in) :: pfield4d
[1412]	1743	#if defined key_iomput
[12276]	1744	CALL xios_send_field(cdname, pfield4d)
	1745	#else
	1746	IF( .FALSE. ) WRITE(numout,*) cdname, pfield4d ! useless test to avoid compilation warnings
	1747	#endif
	1748	END SUBROUTINE iom_p4d
	1749
	1750
	1751	#if defined key_iomput
[9019]	1752	!!----------------------------------------------------------------------
[9802]	1753	!! 'key_iomput' XIOS interface
[9019]	1754	!!----------------------------------------------------------------------
[1359]	1755
[9930]	1756	SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, &
[5363]	1757	& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask, &
[5415]	1758	& nvertex, bounds_lon, bounds_lat, area )
[9019]	1759	!!----------------------------------------------------------------------
	1760	!!----------------------------------------------------------------------
	1761	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1762	INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
	1763	INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
[9930]	1764	INTEGER , OPTIONAL, INTENT(in) :: nvertex
[9019]	1765	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
	1766	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds_lon, bounds_lat, area
	1767	LOGICAL , DIMENSION(:) , OPTIONAL, INTENT(in) :: mask
	1768	!!----------------------------------------------------------------------
	1769	!
	1770	IF( xios_is_valid_domain (cdid) ) THEN
[4148]	1771	CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1772	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1773	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1774	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear')
[9367]	1775	ENDIF
[9019]	1776	IF( xios_is_valid_domaingroup(cdid) ) THEN
[4148]	1777	CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1778	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1779	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1780	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear' )
[3695]	1781	ENDIF
[9019]	1782	!
[4148]	1783	CALL xios_solve_inheritance()
[9019]	1784	!
[3695]	1785	END SUBROUTINE iom_set_domain_attr
	1786
	1787
[9019]	1788	SUBROUTINE iom_set_zoom_domain_attr( cdid, ibegin, jbegin, ni, nj )
	1789	!!----------------------------------------------------------------------
	1790	!!----------------------------------------------------------------------
[9930]	1791	CHARACTER(LEN=*), INTENT(in) :: cdid
	1792	INTEGER , INTENT(in) :: ibegin, jbegin, ni, nj
	1793	!
	1794	TYPE(xios_gridgroup) :: gridgroup_hdl
	1795	TYPE(xios_grid) :: grid_hdl
	1796	TYPE(xios_domain) :: domain_hdl
	1797	TYPE(xios_axis) :: axis_hdl
	1798	CHARACTER(LEN=64) :: cldomrefid ! domain_ref name
	1799	CHARACTER(len=1) :: cl1 ! last character of this name
[9019]	1800	!!----------------------------------------------------------------------
[9930]	1801	!
	1802	IF( xios_is_valid_zoom_domain(cdid) ) THEN
	1803	! define the zoom_domain attributs
	1804	CALL xios_set_zoom_domain_attr( cdid, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj )
	1805	! define a new 2D grid with this new domain
	1806	CALL xios_get_handle("grid_definition", gridgroup_hdl )
	1807	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_2D' ) ! add a new 2D grid to grid_definition
	1808	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1809	! define a new 3D grid with this new domain
	1810	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_3D' ) ! add a new 3D grid to grid_definition
	1811	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1812	! vertical axis
	1813	cl1 = cdid(LEN_TRIM(cdid):) ! last letter of cdid
	1814	cl1 = CHAR(ICHAR(cl1)+32) ! from upper to lower case
	1815	CALL xios_add_child(grid_hdl, axis_hdl, 'depth'//cl1) ! add its axis
	1816	ENDIF
	1817	!
[7646]	1818	END SUBROUTINE iom_set_zoom_domain_attr
	1819
	1820
[5415]	1821	SUBROUTINE iom_set_axis_attr( cdid, paxis, bounds )
[9019]	1822	!!----------------------------------------------------------------------
	1823	!!----------------------------------------------------------------------
[4148]	1824	CHARACTER(LEN=*) , INTENT(in) :: cdid
[5415]	1825	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis
	1826	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds
[9019]	1827	!!----------------------------------------------------------------------
	1828	IF( PRESENT(paxis) ) THEN
	1829	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, n_glo=SIZE(paxis), value=paxis )
	1830	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, n_glo=SIZE(paxis), value=paxis )
[5415]	1831	ENDIF
[9019]	1832	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, bounds=bounds )
	1833	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, bounds=bounds )
[4148]	1834	CALL xios_solve_inheritance()
[3737]	1835	END SUBROUTINE iom_set_axis_attr
	1836
	1837
[4148]	1838	SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
[9019]	1839	!!----------------------------------------------------------------------
	1840	!!----------------------------------------------------------------------
	1841	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1842	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_op
	1843	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_offset
	1844	!!----------------------------------------------------------------------
	1845	IF( xios_is_valid_field (cdid) ) CALL xios_set_field_attr ( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1846	IF( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr( cdid, freq_op=freq_op, freq_offset=freq_offset )
[4148]	1847	CALL xios_solve_inheritance()
[3695]	1848	END SUBROUTINE iom_set_field_attr
	1849
	1850
[4148]	1851	SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
[9019]	1852	!!----------------------------------------------------------------------
	1853	!!----------------------------------------------------------------------
[4148]	1854	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1855	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
[9019]	1856	!!----------------------------------------------------------------------
	1857	IF( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
	1858	IF( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
[4148]	1859	CALL xios_solve_inheritance()
[3771]	1860	END SUBROUTINE iom_set_file_attr
[3695]	1861
	1862
[4148]	1863	SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
[9019]	1864	!!----------------------------------------------------------------------
	1865	!!----------------------------------------------------------------------
[4148]	1866	CHARACTER(LEN=*) , INTENT(in ) :: cdid
[7646]	1867	CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix
	1868	TYPE(xios_duration), OPTIONAL , INTENT(out) :: output_freq
[4148]	1869	LOGICAL :: llexist1,llexist2,llexist3
	1870	!---------------------------------------------------------------------
	1871	IF( PRESENT( name ) ) name = '' ! default values
	1872	IF( PRESENT( name_suffix ) ) name_suffix = ''
[7646]	1873	IF( PRESENT( output_freq ) ) output_freq = xios_duration(0,0,0,0,0,0)
[9019]	1874	IF( xios_is_valid_file (cdid) ) THEN
[4148]	1875	CALL xios_solve_inheritance()
	1876	CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1877	IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
	1878	IF(llexist2) CALL xios_get_file_attr ( cdid, name_suffix = name_suffix )
	1879	IF(llexist3) CALL xios_get_file_attr ( cdid, output_freq = output_freq )
	1880	ENDIF
[9019]	1881	IF( xios_is_valid_filegroup(cdid) ) THEN
[4148]	1882	CALL xios_solve_inheritance()
	1883	CALL xios_is_defined_filegroup_attr( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1884	IF(llexist1) CALL xios_get_filegroup_attr( cdid, name = name )
	1885	IF(llexist2) CALL xios_get_filegroup_attr( cdid, name_suffix = name_suffix )
	1886	IF(llexist3) CALL xios_get_filegroup_attr( cdid, output_freq = output_freq )
	1887	ENDIF
	1888	END SUBROUTINE iom_get_file_attr
	1889
	1890
	1891	SUBROUTINE iom_set_grid_attr( cdid, mask )
[9019]	1892	!!----------------------------------------------------------------------
	1893	!!----------------------------------------------------------------------
[4148]	1894	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1895	LOGICAL, DIMENSION(:,:,:), OPTIONAL, INTENT(in) :: mask
[9019]	1896	!!----------------------------------------------------------------------
	1897	IF( xios_is_valid_grid (cdid) ) CALL xios_set_grid_attr ( cdid, mask_3D=mask )
	1898	IF( xios_is_valid_gridgroup(cdid) ) CALL xios_set_gridgroup_attr( cdid, mask_3D=mask )
[4148]	1899	CALL xios_solve_inheritance()
[3771]	1900	END SUBROUTINE iom_set_grid_attr
[3695]	1901
[4152]	1902	SUBROUTINE iom_setkt( kt, cdname )
[9019]	1903	!!----------------------------------------------------------------------
	1904	!!----------------------------------------------------------------------
[4152]	1905	INTEGER , INTENT(in) :: kt
	1906	CHARACTER(LEN=*), INTENT(in) :: cdname
[9019]	1907	!!----------------------------------------------------------------------
[4152]	1908	CALL iom_swap( cdname ) ! swap to cdname context
	1909	CALL xios_update_calendar(kt)
[9019]	1910	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4152]	1911	END SUBROUTINE iom_setkt
[3695]	1912
[4152]	1913	SUBROUTINE iom_context_finalize( cdname )
[9019]	1914	!!----------------------------------------------------------------------
	1915	!!----------------------------------------------------------------------
[4152]	1916	CHARACTER(LEN=*), INTENT(in) :: cdname
[9367]	1917	CHARACTER(LEN=120) :: clname
[9019]	1918	!!----------------------------------------------------------------------
[9367]	1919	clname = cdname
[12957]	1920	IF(lwp) write(numout, *) 'Finalize: ', TRIM(cdname)
[9367]	1921	IF( TRIM(Agrif_CFixed()) .NE. '0' ) clname = TRIM(Agrif_CFixed())//"_"//clname
	1922	IF( xios_is_valid_context(clname) ) THEN
[4990]	1923	CALL iom_swap( cdname ) ! swap to cdname context
	1924	CALL xios_context_finalize() ! finalize the context
[5407]	1925	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4990]	1926	ENDIF
[9367]	1927	!
[4152]	1928	END SUBROUTINE iom_context_finalize
	1929
	1930
[9984]	1931	SUBROUTINE set_grid( cdgrd, plon, plat, ldxios, ldrxios )
[1359]	1932	!!----------------------------------------------------------------------
[4148]	1933	!! * ROUTINE set_grid *
[1359]	1934	!!
[1725]	1935	!! ** Purpose : define horizontal grids
[1359]	1936	!!----------------------------------------------------------------------
[3771]	1937	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
[1359]	1938	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon
	1939	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
[3771]	1940	!
[9019]	1941	INTEGER :: ni, nj
[3771]	1942	REAL(wp), DIMENSION(jpi,jpj,jpk) :: zmask
[9984]	1943	LOGICAL, INTENT(IN) :: ldxios, ldrxios
[9019]	1944	!!----------------------------------------------------------------------
	1945	!
	1946	ni = nlei-nldi+1
	1947	nj = nlej-nldj+1
	1948	!
[7646]	1949	CALL iom_set_domain_attr("grid_"//cdgrd, ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[3771]	1950	CALL iom_set_domain_attr("grid_"//cdgrd, data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
[9984]	1951	!don't define lon and lat for restart reading context.
	1952	IF ( .NOT.ldrxios ) &
	1953	CALL iom_set_domain_attr("grid_"//cdgrd, lonvalue = RESHAPE(plon(nldi:nlei, nldj:nlej),(/ ni*nj /)), &
[3771]	1954	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[9019]	1955	!
[9367]	1956	IF ( ln_mskland .AND. (.NOT.ldxios) ) THEN
[3771]	1957	! mask land points, keep values on coast line -> specific mask for U, V and W points
	1958	SELECT CASE ( cdgrd )
	1959	CASE('T') ; zmask(:,:,:) = tmask(:,:,:)
[10425]	1960	CASE('U') ; zmask(2:jpim1,:,:) = tmask(2:jpim1,:,:) + tmask(3:jpi,:,:) ; CALL lbc_lnk( 'iom', zmask, 'U', 1. )
	1961	CASE('V') ; zmask(:,2:jpjm1,:) = tmask(:,2:jpjm1,:) + tmask(:,3:jpj,:) ; CALL lbc_lnk( 'iom', zmask, 'V', 1. )
[3771]	1962	CASE('W') ; zmask(:,:,2:jpk ) = tmask(:,:,1:jpkm1) + tmask(:,:,2:jpk) ; zmask(:,:,1) = tmask(:,:,1)
	1963	END SELECT
	1964	!
[7646]	1965	CALL iom_set_domain_attr( "grid_"//cdgrd , mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,1),(/ni*nj /)) /= 0. )
[4148]	1966	CALL iom_set_grid_attr ( "grid_"//cdgrd//"_3D", mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,:),(/ni,nj,jpk/)) /= 0. )
[3771]	1967	ENDIF
[9019]	1968	!
[1359]	1969	END SUBROUTINE set_grid
	1970
[1725]	1971
[5415]	1972	SUBROUTINE set_grid_bounds( cdgrd, plon_cnr, plat_cnr, plon_pnt, plat_pnt )
[5363]	1973	!!----------------------------------------------------------------------
	1974	!! * ROUTINE set_grid_bounds *
	1975	!!
	1976	!! ** Purpose : define horizontal grid corners
	1977	!!
	1978	!!----------------------------------------------------------------------
[9019]	1979	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
	1980	REAL(wp), DIMENSION(jpi,jpj) , INTENT(in) :: plon_cnr, plat_cnr ! Lat/lon coord. of a contiguous vertex of cell (i,j)
	1981	REAL(wp), DIMENSION(jpi,jpj), OPTIONAL, INTENT(in) :: plon_pnt, plat_pnt ! Lat/lon coord. of the point of cell (i,j)
[5363]	1982	!
[9019]	1983	INTEGER :: ji, jj, jn, ni, nj
[12377]	1984	INTEGER :: icnr, jcnr ! Offset such that the vertex coordinate (i+icnr,j+jcnr)
	1985	! ! represents the bottom-left corner of cell (i,j)
[9019]	1986	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: z_bnds ! Lat/lon coordinates of the vertices of cell (i,j)
	1987	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_fld ! Working array to determine where to rotate cells
	1988	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_rot ! Lat/lon working array for rotation of cells
	1989	!!----------------------------------------------------------------------
[5415]	1990	!
[9019]	1991	ALLOCATE( z_bnds(4,jpi,jpj,2), z_fld(jpi,jpj), z_rot(4,2) )
[5363]	1992	!
[5415]	1993	! Offset of coordinate representing bottom-left corner
[5363]	1994	SELECT CASE ( TRIM(cdgrd) )
[9019]	1995	CASE ('T', 'W') ; icnr = -1 ; jcnr = -1
	1996	CASE ('U') ; icnr = 0 ; jcnr = -1
	1997	CASE ('V') ; icnr = -1 ; jcnr = 0
[5363]	1998	END SELECT
[9019]	1999	!
	2000	ni = nlei-nldi+1 ! Dimensions of subdomain interior
	2001	nj = nlej-nldj+1
	2002	!
[5363]	2003	z_fld(:,:) = 1._wp
[10425]	2004	CALL lbc_lnk( 'iom', z_fld, cdgrd, -1. ) ! Working array for location of northfold
[9019]	2005	!
[5363]	2006	! Cell vertices that can be defined
	2007	DO jj = 2, jpjm1
	2008	DO ji = 2, jpim1
[5415]	2009	z_bnds(1,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	2010	z_bnds(2,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	2011	z_bnds(3,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	2012	z_bnds(4,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr+1) ! Top-left
	2013	z_bnds(1,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	2014	z_bnds(2,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	2015	z_bnds(3,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	2016	z_bnds(4,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr+1) ! Top-left
[5363]	2017	END DO
	2018	END DO
[9019]	2019	!
[5363]	2020	! Cell vertices on boundries
	2021	DO jn = 1, 4
[11536]	2022	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,1), cdgrd, 1., pfillval=999._wp )
	2023	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,2), cdgrd, 1., pfillval=999._wp )
[5363]	2024	END DO
[9019]	2025	!
[5415]	2026	! Zero-size cells at closed boundaries if cell points provided,
	2027	! otherwise they are closed cells with unrealistic bounds
	2028	IF( PRESENT(plon_pnt) .AND. PRESENT(plat_pnt) ) THEN
	2029	IF( (nbondi == -1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2030	DO jn = 1, 4 ! (West or jpni = 1), closed E-W
	2031	z_bnds(jn,1,:,1) = plat_pnt(1,:) ; z_bnds(jn,1,:,2) = plon_pnt(1,:)
	2032	END DO
	2033	ENDIF
	2034	IF( (nbondi == 1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2035	DO jn = 1, 4 ! (East or jpni = 1), closed E-W
	2036	z_bnds(jn,nlci,:,1) = plat_pnt(nlci,:) ; z_bnds(jn,nlci,:,2) = plon_pnt(nlci,:)
	2037	END DO
	2038	ENDIF
	2039	IF( nbondj == -1 .OR. (nbondj == 2 .AND. jperio /= 2) ) THEN
	2040	DO jn = 1, 4 ! South or (jpnj = 1, not symmetric)
	2041	z_bnds(jn,:,1,1) = plat_pnt(:,1) ; z_bnds(jn,:,1,2) = plon_pnt(:,1)
	2042	END DO
	2043	ENDIF
	2044	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio < 3 ) THEN
	2045	DO jn = 1, 4 ! (North or jpnj = 1), no north fold
	2046	z_bnds(jn,:,nlcj,1) = plat_pnt(:,nlcj) ; z_bnds(jn,:,nlcj,2) = plon_pnt(:,nlcj)
	2047	END DO
	2048	ENDIF
[5363]	2049	ENDIF
[9019]	2050	!
	2051	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio >= 3 ) THEN ! Rotate cells at the north fold
[5363]	2052	DO jj = 1, jpj
	2053	DO ji = 1, jpi
	2054	IF( z_fld(ji,jj) == -1. ) THEN
	2055	z_rot(1,:) = z_bnds(3,ji,jj,:) ; z_rot(2,:) = z_bnds(4,ji,jj,:)
	2056	z_rot(3,:) = z_bnds(1,ji,jj,:) ; z_rot(4,:) = z_bnds(2,ji,jj,:)
	2057	z_bnds(:,ji,jj,:) = z_rot(:,:)
	2058	ENDIF
	2059	END DO
	2060	END DO
[9019]	2061	ELSE IF( nbondj == 2 .AND. jperio == 2 ) THEN ! Invert cells at the symmetric equator
[5363]	2062	DO ji = 1, jpi
	2063	z_rot(1:2,:) = z_bnds(3:4,ji,1,:)
	2064	z_rot(3:4,:) = z_bnds(1:2,ji,1,:)
	2065	z_bnds(:,ji,1,:) = z_rot(:,:)
	2066	END DO
	2067	ENDIF
[9019]	2068	!
[5363]	2069	CALL iom_set_domain_attr("grid_"//cdgrd, bounds_lat = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,1),(/ 4,ni*nj /)), &
[9019]	2070	& bounds_lon = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,2),(/ 4,ni*nj /)), nvertex=4 )
	2071	!
[5415]	2072	DEALLOCATE( z_bnds, z_fld, z_rot )
[9019]	2073	!
[5363]	2074	END SUBROUTINE set_grid_bounds
	2075
	2076
[5385]	2077	SUBROUTINE set_grid_znl( plat )
	2078	!!----------------------------------------------------------------------
	2079	!! * ROUTINE set_grid_znl *
	2080	!!
	2081	!! ** Purpose : define grids for zonal mean
	2082	!!
	2083	!!----------------------------------------------------------------------
	2084	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
	2085	!
[9019]	2086	INTEGER :: ni, nj, ix, iy
[5385]	2087	REAL(wp), DIMENSION(:), ALLOCATABLE :: zlon
[9019]	2088	!!----------------------------------------------------------------------
	2089	!
	2090	ni=nlei-nldi+1 ! define zonal mean domain (jpj*jpk)
	2091	nj=nlej-nldj+1
	2092	ALLOCATE( zlon(ni*nj) ) ; zlon(:) = 0._wp
	2093	!
[12276]	2094	! CALL dom_ngb( -168.53, 65.03, ix, iy, 'T' ) ! i-line that passes through Bering Strait: Reference latitude (used in plots)
	2095	CALL dom_ngb( 180., 90., ix, iy, 'T' ) ! i-line that passes near the North Pole : Reference latitude (used in plots)
[7646]	2096	CALL iom_set_domain_attr("gznl", ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[5385]	2097	CALL iom_set_domain_attr("gznl", data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	2098	CALL iom_set_domain_attr("gznl", lonvalue = zlon, &
	2099	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[12276]	2100	CALL iom_set_zoom_domain_attr("ptr", ibegin=ix-1, jbegin=0, ni=1, nj=jpjglo)
[5385]	2101	!
	2102	CALL iom_update_file_name('ptr')
	2103	!
	2104	END SUBROUTINE set_grid_znl
	2105
[9019]	2106
[1738]	2107	SUBROUTINE set_scalar
	2108	!!----------------------------------------------------------------------
[4148]	2109	!! * ROUTINE set_scalar *
[1738]	2110	!!
	2111	!! ** Purpose : define fake grids for scalar point
	2112	!!
	2113	!!----------------------------------------------------------------------
[5426]	2114	REAL(wp), DIMENSION(1) :: zz = 1.
[1738]	2115	!!----------------------------------------------------------------------
[9019]	2116	!
[7646]	2117	CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea-1, jbegin=0, ni=1, nj=1)
[5426]	2118	CALL iom_set_domain_attr('scalarpoint', data_dim=2, data_ibegin = 1, data_ni = 1, data_jbegin = 1, data_nj = 1)
[9019]	2119	!
	2120	zz = REAL( narea, wp )
[5426]	2121	CALL iom_set_domain_attr('scalarpoint', lonvalue=zz, latvalue=zz)
[9019]	2122	!
[1738]	2123	END SUBROUTINE set_scalar
	2124
	2125
[1725]	2126	SUBROUTINE set_xmlatt
	2127	!!----------------------------------------------------------------------
[4148]	2128	!! * ROUTINE set_xmlatt *
[1725]	2129	!!
	2130	!! ** Purpose : automatic definitions of some of the xml attributs...
	2131	!!
	2132	!!----------------------------------------------------------------------
	2133	CHARACTER(len=1),DIMENSION( 3) :: clgrd ! suffix name
[4148]	2134	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2135	CHARACTER(len=1) :: cl1 ! 1 character
[5003]	2136	CHARACTER(len=2) :: cl2 ! 2 characters
	2137	CHARACTER(len=3) :: cl3 ! 3 characters
[4148]	2138	INTEGER :: ji, jg ! loop counters
[1725]	2139	INTEGER :: ix, iy ! i-,j- index
	2140	REAL(wp) ,DIMENSION(11) :: zlontao ! longitudes of tao moorings
	2141	REAL(wp) ,DIMENSION( 7) :: zlattao ! latitudes of tao moorings
	2142	REAL(wp) ,DIMENSION( 4) :: zlonrama ! longitudes of rama moorings
	2143	REAL(wp) ,DIMENSION(11) :: zlatrama ! latitudes of rama moorings
	2144	REAL(wp) ,DIMENSION( 3) :: zlonpira ! longitudes of pirata moorings
	2145	REAL(wp) ,DIMENSION( 9) :: zlatpira ! latitudes of pirata moorings
[7646]	2146	TYPE(xios_duration) :: f_op, f_of
[1725]	2147	!!----------------------------------------------------------------------
	2148	!
	2149	! frequency of the call of iom_put (attribut: freq_op)
[9019]	2150	f_op%timestep = 1 ; f_of%timestep = 0 ; CALL iom_set_field_attr('field_definition', freq_op=f_op, freq_offset=f_of)
	2151	f_op%timestep = 2 ; f_of%timestep = 0 ; CALL iom_set_field_attr('trendT_even' , freq_op=f_op, freq_offset=f_of)
	2152	f_op%timestep = 2 ; f_of%timestep = -1 ; CALL iom_set_field_attr('trendT_odd' , freq_op=f_op, freq_offset=f_of)
	2153	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC' , freq_op=f_op, freq_offset=f_of)
	2154	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC_scalar' , freq_op=f_op, freq_offset=f_of)
[12377]	2155	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('ABL' , freq_op=f_op, freq_offset=f_of)
[7646]	2156
[1725]	2157	! output file names (attribut: name)
[4148]	2158	DO ji = 1, 9
	2159	WRITE(cl1,'(i1)') ji
	2160	CALL iom_update_file_name('file'//cl1)
[1725]	2161	END DO
[4148]	2162	DO ji = 1, 99
	2163	WRITE(cl2,'(i2.2)') ji
	2164	CALL iom_update_file_name('file'//cl2)
	2165	END DO
[5003]	2166	DO ji = 1, 999
	2167	WRITE(cl3,'(i3.3)') ji
	2168	CALL iom_update_file_name('file'//cl3)
	2169	END DO
[1725]	2170
	2171	! Zooms...
	2172	clgrd = (/ 'T', 'U', 'W' /)
	2173	DO jg = 1, SIZE(clgrd) ! grid type
	2174	cl1 = clgrd(jg)
	2175	! Equatorial section (attributs: jbegin, ni, name_suffix)
	2176	CALL dom_ngb( 0., 0., ix, iy, cl1 )
[9930]	2177	CALL iom_set_zoom_domain_attr('Eq'//cl1, ibegin=0, jbegin=iy-1, ni=jpiglo, nj=1 )
[4148]	2178	CALL iom_get_file_attr ('Eq'//cl1, name_suffix = clsuff )
	2179	CALL iom_set_file_attr ('Eq'//cl1, name_suffix = TRIM(clsuff)//'_Eq')
	2180	CALL iom_update_file_name('Eq'//cl1)
[1725]	2181	END DO
	2182	! TAO moorings (attributs: ibegin, jbegin, name_suffix)
	2183	zlontao = (/ 137.0, 147.0, 156.0, 165.0, -180.0, -170.0, -155.0, -140.0, -125.0, -110.0, -95.0 /)
	2184	zlattao = (/ -8.0, -5.0, -2.0, 0.0, 2.0, 5.0, 8.0 /)
	2185	CALL set_mooring( zlontao, zlattao )
	2186	! RAMA moorings (attributs: ibegin, jbegin, name_suffix)
	2187	zlonrama = (/ 55.0, 67.0, 80.5, 90.0 /)
	2188	zlatrama = (/ -16.0, -12.0, -8.0, -4.0, -1.5, 0.0, 1.5, 4.0, 8.0, 12.0, 15.0 /)
	2189	CALL set_mooring( zlonrama, zlatrama )
	2190	! PIRATA moorings (attributs: ibegin, jbegin, name_suffix)
	2191	zlonpira = (/ -38.0, -23.0, -10.0 /)
	2192	zlatpira = (/ -19.0, -14.0, -8.0, 0.0, 4.0, 8.0, 12.0, 15.0, 20.0 /)
	2193	CALL set_mooring( zlonpira, zlatpira )
[9019]	2194	!
[1725]	2195	END SUBROUTINE set_xmlatt
	2196
	2197
[9019]	2198	SUBROUTINE set_mooring( plon, plat )
[1725]	2199	!!----------------------------------------------------------------------
[4148]	2200	!! * ROUTINE set_mooring *
[1725]	2201	!!
	2202	!! ** Purpose : automatic definitions of moorings xml attributs...
	2203	!!
	2204	!!----------------------------------------------------------------------
[9019]	2205	REAL(wp), DIMENSION(:), INTENT(in) :: plon, plat ! longitudes/latitudes oft the mooring
[1725]	2206	!
	2207	!!$ CHARACTER(len=1),DIMENSION(4) :: clgrd = (/ 'T', 'U', 'V', 'W' /) ! suffix name
	2208	CHARACTER(len=1),DIMENSION(1) :: clgrd = (/ 'T' /) ! suffix name
[4148]	2209	CHARACTER(len=256) :: clname ! file name
	2210	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2211	CHARACTER(len=1) :: cl1 ! 1 character
	2212	CHARACTER(len=6) :: clon,clat ! name of longitude, latitude
	2213	INTEGER :: ji, jj, jg ! loop counters
	2214	INTEGER :: ix, iy ! i-,j- index
	2215	REAL(wp) :: zlon, zlat
	2216	!!----------------------------------------------------------------------
	2217	DO jg = 1, SIZE(clgrd)
	2218	cl1 = clgrd(jg)
	2219	DO ji = 1, SIZE(plon)
	2220	DO jj = 1, SIZE(plat)
	2221	zlon = plon(ji)
	2222	zlat = plat(jj)
	2223	! modifications for RAMA moorings
	2224	IF( zlon == 67. .AND. zlat == 15. ) zlon = 65.
	2225	IF( zlon == 90. .AND. zlat <= -4. ) zlon = 95.
	2226	IF( zlon == 95. .AND. zlat == -4. ) zlat = -5.
	2227	! modifications for PIRATA moorings
	2228	IF( zlon == -38. .AND. zlat == -19. ) zlon = -34.
	2229	IF( zlon == -38. .AND. zlat == -14. ) zlon = -32.
	2230	IF( zlon == -38. .AND. zlat == -8. ) zlon = -30.
	2231	IF( zlon == -38. .AND. zlat == 0. ) zlon = -35.
	2232	IF( zlon == -23. .AND. zlat == 20. ) zlat = 21.
	2233	IF( zlon == -10. .AND. zlat == -14. ) zlat = -10.
	2234	IF( zlon == -10. .AND. zlat == -8. ) zlat = -6.
	2235	IF( zlon == -10. .AND. zlat == 4. ) THEN ; zlon = 0. ; zlat = 0. ; ENDIF
	2236	CALL dom_ngb( zlon, zlat, ix, iy, cl1 )
	2237	IF( zlon >= 0. ) THEN
	2238	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT( zlon), 'e'
	2239	ELSE ; WRITE(clon, '(f5.1,a)') zlon , 'e'
	2240	ENDIF
	2241	ELSE
	2242	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT(-zlon), 'w'
	2243	ELSE ; WRITE(clon, '(f5.1,a)') -zlon , 'w'
	2244	ENDIF
	2245	ENDIF
	2246	IF( zlat >= 0. ) THEN
	2247	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT( zlat), 'n'
	2248	ELSE ; WRITE(clat, '(f4.1,a)') zlat , 'n'
	2249	ENDIF
	2250	ELSE
	2251	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT(-zlat), 's'
	2252	ELSE ; WRITE(clat, '(f4.1,a)') -zlat , 's'
	2253	ENDIF
	2254	ENDIF
	2255	clname = TRIM(ADJUSTL(clat))//TRIM(ADJUSTL(clon))
[9930]	2256	CALL iom_set_zoom_domain_attr(TRIM(clname)//cl1, ibegin= ix-1, jbegin= iy-1, ni=1, nj=1)
[7646]	2257
[4148]	2258	CALL iom_get_file_attr (TRIM(clname)//cl1, name_suffix = clsuff )
	2259	CALL iom_set_file_attr (TRIM(clname)//cl1, name_suffix = TRIM(clsuff)//'_'//TRIM(clname))
	2260	CALL iom_update_file_name(TRIM(clname)//cl1)
[1725]	2261	END DO
	2262	END DO
	2263	END DO
	2264
	2265	END SUBROUTINE set_mooring
	2266
[4148]	2267
	2268	SUBROUTINE iom_update_file_name( cdid )
	2269	!!----------------------------------------------------------------------
	2270	!! * ROUTINE iom_update_file_name *
	2271	!!
	2272	!! ** Purpose :
	2273	!!
	2274	!!----------------------------------------------------------------------
	2275	CHARACTER(LEN=*) , INTENT(in) :: cdid
	2276	!
	2277	CHARACTER(LEN=256) :: clname
	2278	CHARACTER(LEN=20) :: clfreq
	2279	CHARACTER(LEN=20) :: cldate
	2280	INTEGER :: idx
	2281	INTEGER :: jn
	2282	INTEGER :: itrlen
	2283	INTEGER :: iyear, imonth, iday, isec
	2284	REAL(wp) :: zsec
	2285	LOGICAL :: llexist
[7646]	2286	TYPE(xios_duration) :: output_freq
[4148]	2287	!!----------------------------------------------------------------------
[9019]	2288	!
	2289	DO jn = 1, 2
	2290	!
[7646]	2291	output_freq = xios_duration(0,0,0,0,0,0)
	2292	IF( jn == 1 ) CALL iom_get_file_attr( cdid, name = clname, output_freq = output_freq )
[4148]	2293	IF( jn == 2 ) CALL iom_get_file_attr( cdid, name_suffix = clname )
[9019]	2294	!
[4148]	2295	IF ( TRIM(clname) /= '' ) THEN
[9019]	2296	!
[4148]	2297	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2298	DO WHILE ( idx /= 0 )
	2299	clname = clname(1:idx-1)//TRIM(cexper)//clname(idx+9:LEN_TRIM(clname))
	2300	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2301	END DO
[9019]	2302	!
[4148]	2303	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	2304	DO WHILE ( idx /= 0 )
[7646]	2305	IF ( output_freq%timestep /= 0) THEN
	2306	WRITE(clfreq,'(I18,A2)')INT(output_freq%timestep),'ts'
	2307	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7764]	2308	ELSE IF ( output_freq%second /= 0 ) THEN
	2309	WRITE(clfreq,'(I19,A1)')INT(output_freq%second),'s'
	2310	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2311	ELSE IF ( output_freq%minute /= 0 ) THEN
[7768]	2312	WRITE(clfreq,'(I18,A2)')INT(output_freq%minute),'mi'
[7764]	2313	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7646]	2314	ELSE IF ( output_freq%hour /= 0 ) THEN
	2315	WRITE(clfreq,'(I19,A1)')INT(output_freq%hour),'h'
	2316	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2317	ELSE IF ( output_freq%day /= 0 ) THEN
	2318	WRITE(clfreq,'(I19,A1)')INT(output_freq%day),'d'
	2319	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2320	ELSE IF ( output_freq%month /= 0 ) THEN
	2321	WRITE(clfreq,'(I19,A1)')INT(output_freq%month),'m'
	2322	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2323	ELSE IF ( output_freq%year /= 0 ) THEN
	2324	WRITE(clfreq,'(I19,A1)')INT(output_freq%year),'y'
	2325	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2326	ELSE
[4148]	2327	CALL ctl_stop('error in the name of file id '//TRIM(cdid), &
	2328	& ' attribute output_freq is undefined -> cannot replace @freq@ in '//TRIM(clname) )
[7646]	2329	ENDIF
	2330	clname = clname(1:idx-1)//TRIM(ADJUSTL(clfreq))//clname(idx+6:LEN_TRIM(clname))
	2331	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
[4148]	2332	END DO
[9019]	2333	!
[4148]	2334	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2335	DO WHILE ( idx /= 0 )
[12489]	2336	cldate = iom_sdate( fjulday - rn_Dt / rday )
[4148]	2337	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+11:LEN_TRIM(clname))
	2338	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2339	END DO
[9019]	2340	!
[4148]	2341	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2342	DO WHILE ( idx /= 0 )
[12489]	2343	cldate = iom_sdate( fjulday - rn_Dt / rday, ldfull = .TRUE. )
[4148]	2344	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+15:LEN_TRIM(clname))
	2345	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2346	END DO
[9019]	2347	!
[4148]	2348	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2349	DO WHILE ( idx /= 0 )
[12489]	2350	cldate = iom_sdate( fjulday + rn_Dt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE. )
[4148]	2351	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+9:LEN_TRIM(clname))
	2352	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2353	END DO
[9019]	2354	!
[4148]	2355	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2356	DO WHILE ( idx /= 0 )
[12489]	2357	cldate = iom_sdate( fjulday + rn_Dt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE., ldfull = .TRUE. )
[4148]	2358	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+13:LEN_TRIM(clname))
	2359	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2360	END DO
[9019]	2361	!
[12377]	2362	IF( jn == 1 .AND. TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(clname)
[4148]	2363	IF( jn == 1 ) CALL iom_set_file_attr( cdid, name = clname )
	2364	IF( jn == 2 ) CALL iom_set_file_attr( cdid, name_suffix = clname )
[9019]	2365	!
[4148]	2366	ENDIF
[9019]	2367	!
[4148]	2368	END DO
[9019]	2369	!
[4148]	2370	END SUBROUTINE iom_update_file_name
	2371
	2372
	2373	FUNCTION iom_sdate( pjday, ld24, ldfull )
	2374	!!----------------------------------------------------------------------
	2375	!! * ROUTINE iom_sdate *
	2376	!!
	2377	!! ** Purpose : send back the date corresponding to the given julian day
	2378	!!----------------------------------------------------------------------
[9019]	2379	REAL(wp), INTENT(in ) :: pjday ! julian day
	2380	LOGICAL , INTENT(in ), OPTIONAL :: ld24 ! true to force 24:00 instead of 00:00
	2381	LOGICAL , INTENT(in ), OPTIONAL :: ldfull ! true to get the compleate date: yyyymmdd_hh:mm:ss
[4148]	2382	!
	2383	CHARACTER(LEN=20) :: iom_sdate
	2384	CHARACTER(LEN=50) :: clfmt ! format used to write the date
	2385	INTEGER :: iyear, imonth, iday, ihour, iminute, isec
	2386	REAL(wp) :: zsec
	2387	LOGICAL :: ll24, llfull
[9019]	2388	!!----------------------------------------------------------------------
[4148]	2389	!
	2390	IF( PRESENT(ld24) ) THEN ; ll24 = ld24
	2391	ELSE ; ll24 = .FALSE.
	2392	ENDIF
[9019]	2393	!
[4148]	2394	IF( PRESENT(ldfull) ) THEN ; llfull = ldfull
	2395	ELSE ; llfull = .FALSE.
	2396	ENDIF
[9019]	2397	!
[4148]	2398	CALL ju2ymds( pjday, iyear, imonth, iday, zsec )
	2399	isec = NINT(zsec)
[9019]	2400	!
[4148]	2401	IF ( ll24 .AND. isec == 0 ) THEN ! 00:00 of the next day -> move to 24:00 of the current day
	2402	CALL ju2ymds( pjday - 1., iyear, imonth, iday, zsec )
	2403	isec = 86400
	2404	ENDIF
[9019]	2405	!
[4148]	2406	IF( iyear < 10000 ) THEN ; clfmt = "i4.4,2i2.2" ! format used to write the date
	2407	ELSE ; WRITE(clfmt, "('i',i1,',2i2.2')") INT(LOG10(REAL(iyear,wp))) + 1
	2408	ENDIF
[9019]	2409	!
[5656]	2410	!$AGRIF_DO_NOT_TREAT
[9019]	2411	! needed in the conv
[4148]	2412	IF( llfull ) THEN
	2413	clfmt = TRIM(clfmt)//",'_',i2.2,':',i2.2,':',i2.2"
	2414	ihour = isec / 3600
	2415	isec = MOD(isec, 3600)
	2416	iminute = isec / 60
	2417	isec = MOD(isec, 60)
	2418	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday, ihour, iminute, isec ! date of the end of run
	2419	ELSE
	2420	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday ! date of the end of run
	2421	ENDIF
[5656]	2422	!$AGRIF_END_DO_NOT_TREAT
[9019]	2423	!
[4148]	2424	END FUNCTION iom_sdate
	2425
[1359]	2426	#else
[9019]	2427	!!----------------------------------------------------------------------
	2428	!! NOT 'key_iomput' a few dummy routines
	2429	!!----------------------------------------------------------------------
[4152]	2430	SUBROUTINE iom_setkt( kt, cdname )
	2431	INTEGER , INTENT(in):: kt
	2432	CHARACTER(LEN=*), INTENT(in) :: cdname
	2433	IF( .FALSE. ) WRITE(numout,*) kt, cdname ! useless test to avoid compilation warnings
[1359]	2434	END SUBROUTINE iom_setkt
	2435
[4152]	2436	SUBROUTINE iom_context_finalize( cdname )
	2437	CHARACTER(LEN=*), INTENT(in) :: cdname
	2438	IF( .FALSE. ) WRITE(numout,*) cdname ! useless test to avoid compilation warnings
	2439	END SUBROUTINE iom_context_finalize
	2440
[12377]	2441	SUBROUTINE iom_update_file_name( cdid )
	2442	CHARACTER(LEN=*), INTENT(in) :: cdid
	2443	IF( .FALSE. ) WRITE(numout,*) cdid ! useless test to avoid compilation warnings
	2444	END SUBROUTINE iom_update_file_name
	2445
[1359]	2446	#endif
[4689]	2447
	2448	LOGICAL FUNCTION iom_use( cdname )
	2449	CHARACTER(LEN=*), INTENT(in) :: cdname
	2450	#if defined key_iomput
	2451	iom_use = xios_field_is_active( cdname )
	2452	#else
	2453	iom_use = .FALSE.
	2454	#endif
	2455	END FUNCTION iom_use
[11536]	2456
	2457	SUBROUTINE iom_miss_val( cdname, pmiss_val )
	2458	CHARACTER(LEN=*), INTENT(in ) :: cdname
	2459	REAL(wp) , INTENT(out) :: pmiss_val
	2460	#if defined key_iomput
	2461	! get missing value
	2462	CALL xios_get_field_attr( cdname, default_value = pmiss_val )
	2463	#else
	2464	IF( .FALSE. ) WRITE(numout,*) cdname, pmiss_val ! useless test to avoid compilation warnings
[12377]	2465	IF( .FALSE. ) pmiss_val = 0._wp ! useless assignment to avoid compilation warnings
[11536]	2466	#endif
	2467	END SUBROUTINE iom_miss_val
	2468
[544]	2469	!!======================================================================
	2470	END MODULE iom

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