source: XIOS3/trunk/src/node/domain.hpp @ 2388

Last change on this file since 2388 was 2388, checked in by jderouillat, 2 years ago

Manage hash values with size_t in hash tables of elements associated to output files

  • Property copyright set to
    Software name : XIOS (Xml I/O Server)
    http://forge.ipsl.jussieu.fr/ioserver
    Creation date : January 2009
    Licence : CeCCIL version2
    see license file in root directory : Licence_CeCILL_V2-en.txt
    or http://www.cecill.info/licences/Licence_CeCILL_V2-en.html
    Holder : CEA/LSCE (Laboratoire des Sciences du CLimat et de l'Environnement)
    CNRS/IPSL (Institut Pierre Simon Laplace)
    Project Manager : Yann Meurdesoif
    yann.meurdesoif@cea.fr
File size: 14.4 KB
RevLine 
[591]1#ifndef __XIOS_CDomain__
2#define __XIOS_CDomain__
[219]3
[591]4/// XIOS headers ///
5#include "xios_spl.hpp"
[219]6#include "group_factory.hpp"
7
8#include "declare_group.hpp"
[540]9#include "declare_ref_func.hpp"
[300]10#include "event_client.hpp"
11#include "event_server.hpp"
12#include "buffer_in.hpp"
[369]13#include "array_new.hpp"
14#include "attribute_array.hpp"
[449]15#include "attribute_enum.hpp"
[631]16#include "transformation.hpp"
17#include "transformation_enum.hpp"
[1984]18#include "transformation_path.hpp"
[1025]19#include "server_distribution_description.hpp"
[878]20#include "mesh.hpp"
[1918]21#include "element.hpp"
22#include "local_connector.hpp"
[1930]23#include "scatterer_connector.hpp"
[1918]24#include "gatherer_connector.hpp"
[1930]25#include "distribution_type.hpp"
[1984]26#include "generic_algorithm_transformation.hpp"
[878]27
[1930]28
[1984]29namespace xios
30{
[509]31
[219]32   /// ////////////////////// Déclarations ////////////////////// ///
33
34   class CDomainGroup;
35   class CDomainAttributes;
36   class CDomain;
[878]37   class CFile;
[2206]38   class CField ;
[219]39
40   ///--------------------------------------------------------------
41
42   // Declare/Define CDomainAttribute
43   BEGIN_DECLARE_ATTRIBUTE_MAP(CDomain)
44#  include "domain_attribute.conf"
[775]45#  include "domain_attribute_private.conf"
[219]46   END_DECLARE_ATTRIBUTE_MAP(CDomain)
47
48   ///--------------------------------------------------------------
49
50   class CDomain
51      : public CObjectTemplate<CDomain>
52      , public CDomainAttributes
53   {
[1158]54     /// typedef ///
55     typedef CObjectTemplate<CDomain>   SuperClass;
56     typedef CDomainAttributes SuperClassAttribute;
57     public:
[300]58         enum EEventId
59         {
[2326]60           EVENT_ID_COLLECTIVE=100,
61           EVENT_ID_DOMAIN_DISTRIBUTION, EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE,
62           EVENT_ID_NO_COLLECTIVE=100,
[300]63         } ;
[509]64
[676]65      public:
[219]66
67         typedef CDomainAttributes RelAttributes;
68         typedef CDomainGroup      RelGroup;
[1984]69         
[219]70         /// Constructeurs ///
71         CDomain(void);
72         explicit CDomain(const StdString & id);
73         CDomain(const CDomain & domain);       // Not implemented yet.
74         CDomain(const CDomain * const domain); // Not implemented yet.
[2274]75         static void releaseStaticAllocation(void) ; // release static allocation on heap
76
[2203]77         static CDomain* createDomain();
[2206]78         static CDomain* get(const string& id, bool noError=false) ; //<! return domain pointer using id
79         static bool has(const string& id) ; //<! return domain pointer using id
80         static CField*  getFieldFromId(const string& id) ;
[219]81
[878]82         CMesh* mesh;
[924]83         void assignMesh(const StdString, const int);
[878]84       
[631]85         virtual void parse(xml::CXMLNode & node);
86
[1345]87         void setContextClient(CContextClient* contextClient);
88
[219]89         /// Vérifications ///
90         void checkAttributes(void);
[1869]91         bool checkAttributes_done_ = false ;
92
[2388]93         size_t computeAttributesHash( MPI_Comm comm );
[1984]94         
95      //////////////////////////
96      ///// transformations ////
97      //////////////////////////
98      public:
99        typedef CTransformation<CDomain>::TransformationMapTypes TransMapTypes;
100      private:
101        static bool initializeTransformationMap(std::map<StdString, ETranformationType>& m);
102        static std::map<StdString, ETranformationType> transformationMapList_;
103        static bool dummyTransformationMapList_;
104        TransMapTypes transformationMap_;         
105
106      public:
107        CTransformation<CDomain>* addTransformation(ETranformationType transType, const StdString& id="");
108        CTransformation<CDomain>* addTransformation(ETranformationType transType, CTransformation<CDomain>* transformation) ;
109        void setTransformations(const TransMapTypes&);         
110        void duplicateTransformation(CDomain*);
111        TransMapTypes getAllTransformations();
112        bool hasTransformation();
113        void solveInheritanceTransformation_old(); // to remove later
114        void solveInheritanceTransformation();
115      private:
116        bool solveInheritanceTransformation_done_= false ;
[2206]117      public:
118        bool activateFieldWorkflow(CGarbageCollector& gc) ;
[1984]119      private:
[2206]120        bool activateFieldWorkflow_done_=false ;
121
122      private:
[2270]123        shared_ptr<CGenericAlgorithmTransformation> transformationAlgorithm_ = nullptr ;
[1984]124      public:
[2270]125        void setTransformationAlgorithm(shared_ptr<CGenericAlgorithmTransformation> transformationAlgorithm) { transformationAlgorithm_=transformationAlgorithm ;}
126        shared_ptr<CGenericAlgorithmTransformation> getTransformationAlgorithm(void) { return transformationAlgorithm_ ;}   
[1984]127      private:
128        CTransformationPaths transformationPaths_ ;
129      public:
130        CTransformationPaths getTransformationPaths(void) {return transformationPaths_;} 
131        void setTransformationPaths(const CTransformationPaths& transformationPaths) { transformationPaths_=transformationPaths ;}
132
133      ////////////////////////////
134
[687]135         void redistribute(int nbLocalDomain);
[631]136
[1158]137      public:
138         const std::set<StdString> & getRelFiles(void) const;
[219]139         bool IsWritten(const StdString & filename) const;
[676]140         bool isWrittenCompressed(const StdString& filename) const;
[1144]141         
[1330]142         std::map<int, StdSize> getAttributesBufferSize(CContextClient* client, bool bufferForWriting = false);
[731]143
[219]144         bool isEmpty(void) const;
[594]145         bool isDistributed(void) const;
[1956]146
147        public :
148         /*!
149            \brief return if the domain can be written or not in a compressed way.
150            ie if there are some masked or indexed point on the domain. Valid only on server side.
151            \return true if domain can be writtedn in a compressed way
152         */ 
153         bool isCompressible(void) { if (!isCompressibleComputed_) computeIsCompressible() ; return isCompressible_ ;} 
154        private :
155         bool isCompressible_ ; /** specify if the domain can be written in a compressed way */ 
156         bool isCompressibleComputed_=false ; /** Indicate if compressability has been computed*/
157         void computeIsCompressible() ;
158
159      public :
[1158]160         bool isEqual(CDomain* domain);
[1236]161
162         static bool dispatchEvent(CEventServer& event);
[1875]163     
164      private:
165         /** define if the domain is completed or not ie all attributes have been received before in case
166             of grid reading from file or coupling */ 
167         bool isCompleted_=true ; 
168      public:     
169        /*!
170           \brief Check if a domain is completed
171           Before make any domain processing, we must be sure that all domain informations have
172           been sent, for exemple when reading a grid in a file or when grid elements are sent by an
173           other context (coupling). So all direct reference of the domain (domain_ref) must be also completed
174           \return true if domain and domain reference are completed
175          */
176         bool isCompleted(void)
177         {
178           if (hasDirectDomainReference()) if (!getDirectDomainReference()->isCompleted()) return false;
179           else return isCompleted_ ;
[2282]180
181           MISSING_RETURN( "bool CDomain::isCompleted() " );
182           return true;
[1875]183         }
184         void setCompleted(void) { isCompleted_=true ; }
185         void unsetCompleted(void) { isCompleted_=false ; }
[1236]186
[676]187      public:
[219]188         /// Mutateur ///
189         void addRelFile(const StdString & filename);
[1236]190         void addRelFileCompressed(const StdString& filename);           
191         
[821]192         void AllgatherRectilinearLonLat(CArray<double,1>& lon, CArray<double,1>& lat,
[809]193                                         CArray<double,1>& lon_g, CArray<double,1>& lat_g);
[821]194
195         void fillInRectilinearBoundLonLat(CArray<double,1>& lon, CArray<double,1>& lat,
[809]196                                           CArray<double,2>& boundsLon, CArray<double,2>& boundsLat);
[1158]197         
198         void fillInLonLat();
199         bool distributionAttributesHaveValue() const;
[611]200
[1215]201         size_t getGlobalWrittenSize() ;
[219]202         /// Destructeur ///
203         virtual ~CDomain(void);
204
205         /// Accesseurs statiques ///
206         static StdString GetName(void);
207         static StdString GetDefName(void);
[509]208
[1236]209         static ENodeType GetType(void);       
210
211      public:
212         CArray<double, 1> lonvalue, latvalue;
213         CArray<double, 2> bounds_lonvalue, bounds_latvalue;
214         CArray<double, 1> areavalue;
215
216
[1311]217         CArray<bool, 1> domainMask; // mask_1d, mask_2d -> domainMask
218         CArray<bool, 1> localMask; // domainMask + indexing
[384]219         bool isCurvilinear ;
[449]220         bool hasBounds ;
[611]221         bool hasArea;
[665]222         bool hasLonLat;
[953]223         bool hasPole ;
[2312]224       
[1291]225         void computeLocalMask(void) ;
[1869]226     
227         /** The number of server of a context client. Avoid to re-compute indice computed in a previous computeConnectedClient */
[1974]228         private: std::set<int> listNbServer_ ;
[1869]229         
[631]230      private:
[667]231         void checkDomain(void);
232         void checkLocalIDomain(void);
233         void checkLocalJDomain(void);
234
235         void checkMask(void);
236         void checkDomainData(void);
237         void checkCompression(void);
238
239         void checkBounds(void);
240         void checkArea(void);
241         void checkLonLat();
[1870]242         
243       public:
244         void sendDomainToFileServer(CContextClient* client) ;
245       private:
246         std::set<CContextClient*> sendDomainToFileServer_done_ ;
[1943]247       public:
[1875]248         void sendDomainToCouplerOut(CContextClient* client, const string& fieldId, int posInGrid) ;
249       private:
250         std::set<CContextClient*> sendDomainToCouplerOut_done_ ;
251     
252       public:
253        void makeAliasForCoupling(const string& fieldId, int posInGrid) ;
[2022]254        string getCouplingAlias(const string& fieldId, int posInGrid) ;
[1875]255       private:
256
[1129]257         void convertLonLatValue();
[1158]258         void fillInRectilinearLonLat();
259         void fillInCurvilinearLonLat();
260         void fillInUnstructuredLonLat();
[1236]261         void completeLonLatClient(void); 
[1869]262         
263         
[1025]264       private:         
[1345]265
266/** Clients that have to send a domain. There can be multiple clients in case of secondary server, otherwise only one client. */
[1353]267         std::list<CContextClient*> clients;
268         std::set<CContextClient*> clientsSet;
[1345]269
[1974]270         bool isChecked ;
[676]271         std::set<StdString> relFiles, relFilesCompressed;
[1847]272
273/** only on client side : Global index of each client sent to server: map<serverSize, map<serverRank, indexes>>
274    indSrv_[nbServers] -->  first map is related to the server distribution (ie associated with the contextClient)
275    indSrv_[nbServers][server_rank] -> array of global index sent to the server of rank "server_rank"
276    indSrv_[nbServers][server_rank](ind) --> global index on server of the local element "ind" sent (for lon, lat, mask, etc...)
277*/
[1542]278         std::map<int, std::unordered_map<int, vector<size_t> > > indSrv_;
[1847]279
[1337]280         std::map<int, std::vector<int> > connectedServerRank_;
[1236]281
[715]282         bool isRedistributed_;
[657]283         bool isUnstructed_;
[1847]284
[953]285       
[1930]286       //////////////////////////////////////////////////////////////////////////////////////
287       //  this part is related to distribution, element definition, views and connectors  //
288       //////////////////////////////////////////////////////////////////////////////////////
[1918]289       private:
[2267]290         shared_ptr<CLocalElement> localElement_ = nullptr ;
[1918]291         void initializeLocalElement(void) ;
292       
293       public: 
[2267]294         shared_ptr<CLocalElement> getLocalElement(void) { if (localElement_==nullptr) initializeLocalElement() ; return localElement_ ; }
295         shared_ptr<CLocalView> getLocalView(CElementView::type type) { return getLocalElement()->getView(type) ;}
[1918]296       
297       private: 
298         void addFullView(void) ;
299         void addWorkflowView(void) ;
300         void addModelView(void) ;
301       
302       private:
[2267]303         shared_ptr<CLocalConnector> modelToWorkflowConnector_ ;
[1918]304         void computeModelToWorkflowConnector(void)  ;
[1930]305       public:
[2267]306         shared_ptr<CLocalConnector> getModelToWorkflowConnector(void) { if (modelToWorkflowConnector_==nullptr) computeModelToWorkflowConnector() ; return modelToWorkflowConnector_ ;}
[1930]307
308       public:
309         void computeRemoteElement(CContextClient* client, EDistributionType) ;
[2304]310         void distributeToServer(CContextClient* client, std::map<int, CArray<size_t,1>>& globalIndexOut, std::map<int, CArray<size_t,1>>& globalIndexIn, 
311                                 shared_ptr<CScattererConnector> &scattererConnector, const string& domainId="") ;
[1930]312
313         static void recvDomainDistribution(CEventServer& event) ;
314         void receivedDomainDistribution(CEventServer& event, int phasis) ;
315
[2267]316         void sendDistributedAttributes(CContextClient* client, shared_ptr<CScattererConnector> scaterrerConnector, const string& domainId) ;
[1930]317         static void recvDistributedAttributes(CEventServer& event) ;
318         void recvDistributedAttributes(CEventServer& event, const string& type) ;
[1943]319         void setServerMask(CArray<bool,1>& serverMask, CContextClient* client) ;
320
[1930]321       private:
[2267]322         map<CContextClient*, shared_ptr<CDistributedElement>> remoteElement_ ;
[1930]323       public: 
[2267]324         shared_ptr<CDistributedElement> getRemoteElement(CContextClient* client) {return remoteElement_[client] ;}
[1930]325       private:
[2267]326         map<CContextClient*, shared_ptr<CScattererConnector>> clientToServerConnector_ ;
[1930]327       public: 
[2267]328         shared_ptr<CScattererConnector> getClientToServerConnector(CContextClient* client) { return clientToServerConnector_[client] ;}
[1934]329       
[1930]330       private:
[2267]331         shared_ptr<CGathererConnector>  gathererConnector_ ;
[1943]332       public:
[2267]333         shared_ptr<CGathererConnector> getGathererConnector(void) { return gathererConnector_ ;}
[1943]334        private:
[2267]335         shared_ptr<CGathererConnector> serverFromClientConnector_ ;
336         shared_ptr<CDistributedElement> elementFrom_ ;
[1930]337       public:
[2267]338         shared_ptr<CGathererConnector> getServerFromClientConnector(void) { return serverFromClientConnector_ ;}
[1918]339
[1934]340       private:
[2304]341         shared_ptr<CScattererConnector> serverToClientConnector_ = nullptr ;
342         shared_ptr<CDistributedElement> elementTo_ ;
[1934]343       public: 
[2267]344         shared_ptr<CScattererConnector> getServerToClientConnector(void) { return serverToClientConnector_ ;} 
[1934]345
346       private:
[2267]347         map<CContextClient*,shared_ptr<CGathererConnector>>  clientFromServerConnector_  ;
[1934]348       public: 
[2267]349         shared_ptr<CGathererConnector> getClientFromServerConnector(CContextClient* client) { return clientFromServerConnector_[client] ;}       
[1918]350         
[1930]351
[540]352         DECLARE_REF_FUNC(Domain,domain)
353
[219]354   }; // class CDomain
355
356   ///--------------------------------------------------------------
357
358   // Declare/Define CDomainGroup and CDomainDefinition
359   DECLARE_GROUP(CDomain);
360
361   ///--------------------------------------------------------------
362
[335]363} // namespace xios
[219]364
[878]365#endif //__XIOS_CDomain__
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