Changeset 8462 for branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/slowproc.f90
- Timestamp:
- 2024-03-07T18:38:03+01:00 (4 months ago)
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branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/slowproc.f90
r8423 r8462 72 72 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: siltfraction !! Siltfraction (0-1, unitless) 73 73 !$OMP THREADPRIVATE(siltfraction) 74 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: bulk !! Bulk density (kg/m**3) 75 !$OMP THREADPRIVATE(bulk) 74 76 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:,:) :: laimap !! LAI map when the LAI is prescribed and not calculated by STOMATE 75 77 !$OMP THREADPRIVATE(laimap) … … 137 139 138 140 !! 2. Prepare for reading of PFTmap file 141 !! 142 !! 2.1 Prepare for reading of bulk variable 143 !! 144 IF (ok_moyano_soilhumsat) THEN 145 ! Get the file name from run.def file and set file attributes accordingly 146 filename = 'soil_bulk_and_ph.nc' 147 CALL getin_p('SOIL_BULK_FILE',filename) 148 name = filename(1:LEN_TRIM(FILENAME)-3) 149 CALL xios_orchidee_set_file_attr("soilbulk_file",name=name) 150 151 ! Set variables that can be used in the xml files 152 lerr=xios_orchidee_setvar('bulk_default',bulk_default) 153 154 ! Determine if the file will be read by XIOS. If not,deactivate reading of the file. 155 IF (xios_interpolation .AND. restname_in=='NONE' .AND. .NOT. impsoilt) THEN 156 ! Reading will be done with XIOS later 157 IF (printlev>=2) WRITE(numout,*) 'Reading of soilbulk file will be done later using XIOS. The filename is ', filename 158 ELSE 159 ! No reading by XIOS, deactivate soilbulk file and related variables declared in context_input_orchidee.xml. 160 ! If this is not done, the model will crash if the file is not available in the run directory. 161 IF (printlev>=2) WRITE(numout,*) 'Reading of soil_bulk file will not be done with XIOS.' 162 CALL xios_orchidee_set_file_attr("soilbulk_file",enabled=.FALSE.) 163 CALL xios_orchidee_set_field_attr("soilbulk",enabled=.FALSE.) 164 CALL xios_orchidee_set_field_attr("soilbulk_mask",enabled=.FALSE.) 165 END IF 166 ELSE 167 ! Not needed if the flag is not activated, deactivate soilbulk file and related variables 168 ! declared in context_input_orchidee.xml. 169 ! If this is not done, the model will crash if the file is not 170 ! available in the run directory. 171 IF (printlev>=2) WRITE(numout,*) 'Reading of soil_bulk file will not be done with XIOS.' 172 CALL xios_orchidee_set_file_attr("soilbulk_file",enabled=.FALSE.) 173 CALL xios_orchidee_set_field_attr("soilbulk",enabled=.FALSE.) 174 CALL xios_orchidee_set_field_attr("soilbulk_mask",enabled=.FALSE.) 175 END IF 176 177 !! 178 !! 2.2 Prepare for reading of PFTmap file 179 !! 180 139 181 filename = 'PFTmap.nc' 140 182 CALL getin_p('VEGETATION_FILE',filename) … … 377 419 rest_id_stom, hist_id_stom, hist_id_stom_IPCC, & 378 420 indexLand, lalo, neighbours, resolution, & 379 contfrac, totfrac_nobio, clayfraction, temp_air,&380 lai, veget, veget_max,&421 contfrac, totfrac_nobio, clayfraction, bulk, & 422 temp_air, lai, veget, veget_max, & 381 423 deadleaf_cover, assim_param, temp_growth ) 382 424 ENDIF … … 478 520 SUBROUTINE slowproc_main (kjit, kjpij, kjpindex, & 479 521 IndexLand, indexveg, lalo, neighbours, resolution, contfrac, soiltile, fraclut, nwdFraclut, & 480 temp_air, temp_sol, stempdiag, &522 temp_air, temp_sol, stempdiag, shumdiagSAT,litterhumdiagSAT, & 481 523 humrel, shumdiag, litterhumdiag, precip_rain, precip_snow, gpp, & 482 524 deadleaf_cover, & … … 511 553 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (in) :: stempdiag !! Soil temperature (K) 512 554 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (in) :: shumdiag !! Relative soil moisture (0-1, unitless) 555 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (in) :: shumdiagSAT !! Relative soil moisture (0-1, unitless) 556 !! with respect to(mcs-mcw) 513 557 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: litterhumdiag !! Litter humidity (0-1, unitless) 558 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: litterhumdiagSAT !! Litter humidity (0-1, unitless) 559 !!with respect to(tmc_litter_sat-tmc_litter_wilt) 514 560 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_rain !! Rain precipitation (mm dt_stomate^{-1}) 515 561 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_snow !! Snow precipitation (mm dt_stomate^{-1}) … … 627 673 628 674 !! 4.1 Call stomate main routine that will call all c-cycle routines ! 675 629 676 CALL stomate_main (kjit, kjpij, kjpindex, & 630 677 IndexLand, lalo, neighbours, resolution, contfrac, totfrac_nobio, clayfraction, & 631 temp_air, temp_sol, stempdiag, &632 humrel, shumdiag, litterhumdiag, precip_rain, precip_snow, gpp, &678 bulk, temp_air, temp_sol, stempdiag, humrel, shumdiag, shumdiagSAT, litterhumdiag, & 679 litterhumdiagSAT, precip_rain, precip_snow, gpp, & 633 680 deadleaf_cover, & 634 681 assim_param, & … … 638 685 co2_flux, fco2_lu, fco2_wh, fco2_ha, & 639 686 resp_maint, resp_hetero, resp_growth, temp_growth) 640 641 687 642 688 !! 4.2 Output the respiration terms and the net primary … … 865 911 ! counter, vegetation fraction, max vegetation fraction, LAI 866 912 ! variable from stomate, fraction of bare soil, soiltype 867 ! fraction, clay fraction, height of vegetation, map of LAI913 ! fraction, clay fraction, bulk density, height of vegetation, map of LAI 868 914 869 915 CALL restput_p (rest_id, 'veget', nbp_glo, nvm, 1, kjit, veget, 'scatter', nbp_glo, index_g) … … 904 950 CALL restput_p (rest_id, 'clay_frac', nbp_glo, 1, 1, kjit, clayfraction, 'scatter', nbp_glo, index_g) 905 951 CALL restput_p (rest_id, 'sand_frac', nbp_glo, 1, 1, kjit, sandfraction, 'scatter', nbp_glo, index_g) 952 IF (ok_moyano_soilhumsat) CALL restput_p (rest_id, 'bulk', nbp_glo, 1, 1, kjit, bulk, 'scatter', nbp_glo,index_g) 953 906 954 !salma: added the following lines for restput of the soil parameters 907 955 CALL restput_p (rest_id, 'ks', nbp_glo, 1, 1, kjit, ks, 'scatter', nbp_glo, index_g) … … 929 977 ! 2.2 Write restart variables managed by STOMATE 930 978 IF ( ok_stomate ) THEN 931 CALL stomate_finalize (kjit, kjpindex, indexLand, clayfraction, assim_param)979 CALL stomate_finalize (kjit, kjpindex, indexLand, clayfraction, bulk, assim_param) 932 980 ENDIF 933 981 … … 1057 1105 siltfraction(:)=undef_sechiba 1058 1106 1107 ALLOCATE (bulk(kjpindex),stat=ier) 1108 IF (ier /= 0) CALL ipslerr_p(3,'slowproc_init','Problem in allocation of variable bulk','','') 1109 bulk(:)=undef_sechiba 1110 1059 1111 ! Allocation of last year vegetation fraction in case of land use change 1060 1112 ALLOCATE(veget_max_new(kjpindex, nvm), STAT=ier) … … 1211 1263 END IF 1212 1264 1265 1266 IF (ok_moyano_soilhumsat) THEN 1267 var_name= 'bulk' 1268 CALL ioconf_setatt_p('UNITS', '-') 1269 CALL ioconf_setatt_p('LONG_NAME','Bulk density in each mesh') 1270 CALL restget_p (rest_id, var_name, nbp_glo, 1, 1, kjit, .TRUE., bulk, "gather", nbp_glo, index_g) 1271 IF ( ALL(bulk(:) .EQ. val_exp ) ) THEN 1272 ! bulk is not in restart file 1273 call_slowproc_soilt=.TRUE. 1274 END IF 1275 END IF 1276 1277 1278 1213 1279 ! Calculate siltfraction not needed to be in restart file 1214 1280 IF ( ALL( sandfraction(:) .EQ. val_exp) ) THEN … … 1308 1374 CALL setvar_p (ks, val_exp, 'KS_IMP', ks_default) 1309 1375 1376 !Config Key = BULK 1377 !Config Desc = Bulk density (0-dim mode) 1378 !Config Def = 1000.0 1379 !Config If = IMPOSE_SOIL 1380 !Config Help = Determines the bulk density in the grid box. The bulk density 1381 !Config is the weight of soil in a given volume. 1382 !Config Units = [-] 1383 CALL setvar_p (bulk, val_exp, 'BULK', bulk_default) 1384 1310 1385 ! By default, we calculate mcf and mcw from the above values, as in slowproc_soilt, 1311 1386 ! but they can be overruled by values from run.def … … 1357 1432 CALL slowproc_soilt(njsc, ks, nvan, avan, mcr, mcs, mcfc, mcw, kjpindex, & 1358 1433 lalo, neighbours, resolution, contfrac, soilclass, & 1359 clayfraction, sandfraction, siltfraction )1434 clayfraction, sandfraction, siltfraction, bulk) 1360 1435 1361 1436 call_slowproc_soilt=.FALSE. … … 1536 1611 ENDIF 1537 1612 1613 1538 1614 var_name= 'lai' 1539 1615 CALL ioconf_setatt_p('UNITS', '-') … … 1611 1687 !Config Units = [-] 1612 1688 CALL setvar_p (lai, val_exp, 'SECHIBA_LAI', llaimax) 1689 1613 1690 1614 1691 !Config Key = SLOWPROC_HEIGHT … … 1723 1800 ENDIF 1724 1801 1725 1726 1802 !! 4.3 Dynamic irrigation map 1727 1803 ! If do_irrigation, it will look to the dynamical irrig. map in restart … … 1843 1919 IF (ALLOCATED (sandfraction)) DEALLOCATE (sandfraction) 1844 1920 IF (ALLOCATED (siltfraction)) DEALLOCATE (siltfraction) 1921 IF (ALLOCATED (bulk)) DEALLOCATE (bulk) 1845 1922 IF (ALLOCATED (laimap)) DEALLOCATE (laimap) 1846 1923 IF (ALLOCATED (veget_max_new)) DEALLOCATE (veget_max_new) … … 2531 2608 END IF 2532 2609 2533 ! Assig ning the right values and giving a value where information was not found2610 ! Assiggning the right values and giving a value where information was not found 2534 2611 DO ib=1,nbpt 2535 2612 IF (alaimap(ib) < min_sechiba) THEN … … 2931 3008 !>\BRIEF looks for nearest grid point on the fine map 2932 3009 !! 2933 !! DESCRIPTION : (definitions, functional, design, flags): 2934 !! 3010 !! DESCRIPTION : (definitions, functional, design, flags): 3011 !! 2935 3012 !! RECENT CHANGE(S): None 2936 3013 !! … … 3003 3080 !! 3004 3081 !>\BRIEF Interpolate the Zobler or Reynolds/USDA soil type map 3082 !! Read and interpolate soil bulk from file. 3005 3083 !! 3006 3084 !! DESCRIPTION : (definitions, functional, design, flags): … … 3010 3088 !! and everything needed to read all maps and assign parameter values. 3011 3089 !! 3012 !! MAIN OUTPUT VARIABLE(S): ::soiltype, ::clayfraction, sandfraction, siltfraction 3090 !! MAIN OUTPUT VARIABLE(S): ::soiltype, ::clayfraction, sandfraction, siltfraction, bulk 3013 3091 !! 3014 3092 !! REFERENCE(S) : Reynold, Jackson, and Rawls (2000). Estimating soil water-holding capacities … … 3019 3097 !! \n 3020 3098 !_ ================================================================================================================================ 3021 SUBROUTINE slowproc_soilt(njsc, ks, nvan, avan, mcr, mcs, mcfc, mcw, nbpt, lalo, neighbours, resolution, contfrac, soilclass, clayfraction, sandfraction, siltfraction )3099 SUBROUTINE slowproc_soilt(njsc, ks, nvan, avan, mcr, mcs, mcfc, mcw, nbpt, lalo, neighbours, resolution, contfrac, soilclass, clayfraction, sandfraction, siltfraction, bulk) 3022 3100 3023 3101 USE interpweight … … 3061 3139 REAL(r_std), INTENT(out) :: sandfraction(nbpt) !! The fraction of sand (for SP-MIP) 3062 3140 REAL(r_std), INTENT(out) :: siltfraction(nbpt) !! The fraction of silt (for SP-MIP) 3141 REAL(r_std), INTENT(out) :: bulk(nbpt) !! Bulk density as used by STOMATE 3063 3142 ! 3064 3143 ! … … 3088 3167 CHARACTER(LEN=80) :: spmipexp !! designing the number of sp-mip experiment 3089 3168 CHARACTER(LEN=80) :: unif_case !! designing the model of experiment 4 (sp_mip) 3090 3169 REAL(r_std), DIMENSION(nbpt) :: abulkph !!Availability of the bulk and ph interpolation 3091 3170 REAL(r_std) :: vmin, vmax !! min/max values to use for the 3092 3171 … … 3637 3716 IF ( (solt(ilf) .LE. nscm) .AND. (solt(ilf) .GT. 0) ) THEN 3638 3717 soilclass(ib,solt(ilf)) = textrefrac(ib,solt(ilf)) 3639 clayfraction(ib) = clayfraction(ib) + textfrac_table(solt(ilf),3) * 3718 clayfraction(ib) = clayfraction(ib) + textfrac_table(solt(ilf),3) * & 3640 3719 textrefrac(ib,solt(ilf)) 3641 3720 sandfraction(ib) = sandfraction(ib) + textfrac_table(solt(ilf),2) * & … … 3688 3767 3689 3768 ENDIF ! xios_interpolation 3769 3770 !! 3771 !! Read and interpolate soil bulk and soil ph using IOIPSL or XIOS 3772 !! 3773 IF (ok_moyano_soilhumsat) THEN 3774 IF (xios_interpolation) THEN 3775 ! Read and interpolate using XIOS 3776 3777 ! Check if the restart file for sechiba is read. 3778 ! Reading of soilbulk and soilph with XIOS is only activated if restname==NONE. 3779 IF (restname_in /= 'NONE') THEN 3780 CALL ipslerr_p(3,'slowproc_soilt','soilbulk and soilph can not be read with XIOS if sechiba restart file exist', & 3781 'Remove sechiba restart file and start again','') 3782 END IF 3783 3784 IF (printlev_loc>=3) WRITE (numout,*) 'slowproc_soilt:Read soilbulk and soilph with XIOS' 3785 CALL xios_orchidee_recv_field('soilbulk', bulk) 3786 ELSE 3787 ! Read using IOIPSL and interpolate using aggregate tool in ORCHIDEE 3788 IF (printlev_loc>=3) WRITE (numout,*) 'slowproc_soilt:Read soilbulk and soilph with IOIPSL' 3789 !! Read soilbulk 3790 3791 !Config Key = SOIL_BULK_FILE 3792 !Config Desc = Name of file from which soil bulk should be read 3793 !Config Def = soil_bulk_and_ph.nc 3794 !Config If = 3795 !Config Help = 3796 !Config Units = [FILE] 3797 3798 ! By default, bulk and ph is stored in the same file but they could be 3799 ! separated if needed. 3800 filename = 'soil_bulk_and_ph.nc' 3801 CALL getin_p('SOIL_BULK_FILE',filename) 3802 3803 variablename = 'soilbulk' 3804 ! Name of the longitude and latitude in the input file 3805 lonname = 'nav_lon' 3806 latname = 'nav_lat' 3807 vmin=0 ! not used in interpweight_2Dcont 3808 vmax=0 ! not used in interpweight_2Dcont 3809 3810 ! Should negative values be set to zero from input file? 3811 nonegative = .FALSE. 3812 ! Type of mask to apply to the input data (see header for more 3813 ! details) 3814 maskingtype = 'mabove' 3815 ! Values to use for the masking 3816 maskvals = (/ min_sechiba, undef_sechiba, undef_sechiba/) 3817 ! Name of the variable with the values for the mask in the input file 3818 ! (only if maskkingtype='var') ( not used) 3819 namemaskvar = '' 3820 ! Type of calculation of cell fractions 3821 fractype = 'default' 3822 3823 IF (printlev_loc >= 1) WRITE(numout,*) "slowproc_soilt: Read and interpolate " & 3824 // TRIM(filename) // " for variable " // TRIM(variablename) 3825 3826 3827 CALL interpweight_2Dcont(nbpt, 0, 0, lalo, resolution,neighbours, & 3828 contfrac, filename, variablename, lonname, latname,vmin, vmax,nonegative, maskingtype, & 3829 maskvals, namemaskvar, -1, fractype, bulk_default,undef_sechiba, & 3830 bulk, abulkph) 3831 WRITE(numout,*) 'bulk density map is read _______' 3832 3833 3834 ENDIF ! xios_interpolation 3835 ENDIF 3690 3836 3691 3837 ! End of soil texture reading, for 'maps' and classical behavior … … 3818 3964 CALL xios_orchidee_send_field("interp_diag_njsc",REAL(njsc, r_std)) 3819 3965 CALL xios_orchidee_send_field("interp_diag_clayfraction",clayfraction) 3966 CALL xios_orchidee_send_field("interp_diag_bulk",bulk) 3820 3967 CALL xios_orchidee_send_field("interp_diag_sandfraction",sandfraction) 3821 3968 CALL xios_orchidee_send_field("interp_diag_siltfraction",siltfraction)
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