Opened 8 years ago

Closed 7 years ago

#298 closed defect (wontfix)

create_se YE for histNMC 3D variables

Reported by: mafoipsl Owned by: somebody
Priority: minor Milestone: libIGCM_v2.8.3
Component: PostProcessing Version:
Keywords: Cc:

Description

An error occurs during TS_YE creation for 3D variables coming from histmthNMC.

Exemple :

# Files to be copied
cp -p  /ccc/store/cont003/gencmip6/p86maf/IGCM_OUT/IPSLCM5A2/DEVT/pdControl/CPL01-5A2/ATM/Output/MO/CPL01-5A2_18500101_18511231_1M_histmthNMC.nc .
cp -p  /ccc/store/cont003/gencmip6/p86maf/IGCM_OUT/IPSLCM5A2/DEVT/pdControl/CPL01-5A2/ATM/Output/MO/CPL01-5A2_18500101_18511231_1M_histmth.nc .
  • Commands with error : 
    # KO
ncrcat -C --hst -v lon,lat,plev,time_counter,time_centered,time_centered_bounds,ta CPL01-5A2_18500101_18511231_1M_histmthNMC.nc CPL01-5A2_18500101_18511231_1M_ta.nc
cdo yearmonmean -selvar,ta CPL01-5A2_18500101_18511231_1M_ta.nc CPL01-5A2_18500101_18511231_1Y_ta.nc
ncks -Oh -x -v ta CPL01-5A2_18500101_18511231_1M_ta.nc CPL01-5A2_18500101_18511231_1Y_ta_tmp1.nc
cdo -mulc,1 CPL01-5A2_18500101_18511231_1Y_ta_tmp1.nc CPL01-5A2_18500101_18511231_1Y_ta_tmp2.nc
ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" CPL01-5A2_18500101_18511231_1Y_ta.nc
  • commands working on similar variable form histmth. 
    # A OK

ncrcat -C --hst -v lon,lat,presnivs,time_counter,time_centered,time_centered_bounds,aire,upwd CPL01-5A2_18500101_18511231_1M_histmth.nc CPL01-5A2_18500101_18511231_1M_upwd.nc
cdo yearmonmean -selvar,upwd CPL01-5A2_18500101_18511231_1M_upwd.nc CPL01-5A2_18500101_18511231_1Y_upwd.nc
ncks -Oh -x -v upwd CPL01-5A2_18500101_18511231_1M_upwd.nc CPL01-5A2_18500101_18511231_1Y_upwd_tmp1.nc
cdo -mulc,1 CPL01-5A2_18500101_18511231_1Y_upwd_tmp1.nc CPL01-5A2_18500101_18511231_1Y_upwd_tmp2.nc
ncks -h -A CPL01-5A2_18500101_18511231_1Y_upwd_tmp2.nc CPL01-5A2_18500101_18511231_1Y_upwd.nc
ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" CPL01-5A2_18500101_18511231_1Y_upwd.nc
  • Error, selvar processes only 1 variable. 
    KO:
ncrcat -C --hst -v lon,lat,plev,time_counter,time_centered,time_centered_bounds,ta CPL01-5A2_18500101_18511231_1M_histmthNMC.nc CPL01-5A2_18500101_18511231_1M_ta.nc
cdo yearmonmean -selvar,ta CPL01-5A2_18500101_18511231_1M_ta.nc CPL01-5A2_18500101_18511231_1Y_ta.nc
cdo yearmonmean: Started child process "selvar,ta CPL01-5A2_18500101_18511231_1M_ta.nc (pipe1.1)".
Warning (cdfScanVarAttributes) : NetCDF: Variable not found - time_counter_bounds
Warning (find_time_vars) : Found more than one time variable, skipped variable time_centered!
cdo(2) selname: Processed 3760128 values from 1 variable over 24 timesteps ( 0.44s )
cdo yearmonmean: Processed 3760128 values from 1 variable over 24 timesteps ( 0.47s )
...
  • Trace of execution on 3D variable coming from histmth. selvar processes 2 variables. 
    OK :
ncrcat -C --hst -v lon,lat,presnivs,time_counter,time_centered,time_centered_bounds,aire,upwd CPL01-5A2_18500101_18511231_1M_histmth.nc CPL01-5A2_18500101_18511231_1M_upwd.nc

cdo yearmonmean -selvar,upwd CPL01-5A2_18500101_18511231_1M_upwd.nc CPL01-5A2_18500101_18511231_1Y_upwd.nc
cdo yearmonmean: Started child process "selvar,upwd CPL01-5A2_18500101_18511231_1M_upwd.nc (pipe1.1)".
Warning (cdfScanVarAttributes) : NetCDF: Variable not found - time_counter_bounds
Warning (find_time_vars) : Found more than one time variable, skipped variable time_centered!
cdo(2) selname: Processed 8626176 values from 2 variables over 24 timesteps ( 0.23s )
cdo yearmonmean: Processed 8626176 values from 1 variable over 24 timesteps ( 0.23s )
ncks -Oh -x -v upwd CPL01-5A2_18500101_18511231_1M_upwd.nc CPL01-5A2_18500101_18511231_1Y_upwd_tmp1.nc
cdo -mulc,1 CPL01-5A2_18500101_18511231_1Y_upwd_tmp1.nc CPL01-5A2_18500101_18511231_1Y_upwd_tmp2.nc
Warning (cdfScanVarAttributes) : NetCDF: Variable not found - time_counter_bounds
Warning (find_time_vars) : Found more than one time variable, skipped variable time_centered!
cdo mulc: Processed 9216 values from 1 variable over 1 timestep ( 0.01s )
ncks -h -A CPL01-5A2_18500101_18511231_1Y_upwd_tmp2.nc CPL01-5A2_18500101_18511231_1Y_upwd.nc
ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" CPL01-5A2_18500101_18511231_1Y_upwd.nc

Change History (2)

comment:1 Changed 8 years ago by mafoipsl

Oops : Error is :

ncks -Oh -x -v ta CPL01-5A2_18500101_18511231_1M_ta.nc CPL01-5A2_18500101_18511231_1Y_ta_tmp1.nc
cdo -mulc,1 CPL01-5A2_18500101_18511231_1Y_ta_tmp1.nc CPL01-5A2_18500101_18511231_1Y_ta_tmp2.nc
Warning (cdfScanVarAttributes) : NetCDF: Variable not found - time_counter_bounds
Warning (find_time_vars) : Found more than one time variable, skipped variable time_centered!

cdo mulc: Open failed on >CPL01-5A2_18500101_18511231_1Y_ta_tmp1.nc<
Unsupported file structure
HDF5-DIAG: Error detected in HDF5 (1.8.12) thread 0:
  #000: /ccc/products2/hdf5-1.8.12/src/hdf5-1.8.12/src/H5T.c line 1763 in H5Tclose(): not a datatype
    major: Invalid arguments to routine
    minor: Inappropriate type

Error (cdf_close) : NetCDF: HDF error

comment:2 Changed 7 years ago by sdipsl

  • Resolution set to wontfix
  • Status changed from new to closed

Done see r1393

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