Ignore:
Timestamp:
05/09/12 11:07:41 (12 years ago)
Author:
sdipsl
Message:
  • Bugfix on cesium. Standalone postprocessing did not handled pack files properly
  • sys_default was broken. Fix it.
  • inca.dat exception known by all system library
  • cosmetics
File:
1 edited

Legend:

Unmodified
Added
Removed

  • trunk/libIGCM/libIGCM_sys/libIGCM_sys_obelix.ksh

    r657 r664  
    201201function IGCM_sys_RshMaster { 
    202202  IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ 
    203  
    204   ssh obelix3 exec /bin/ksh  <<-EOF 
     203  ssh obelix3 /bin/ksh  <<-EOF 
    205204    export libIGCM=${libIGCM} 
    206205    export DEBUG_debug=${DEBUG_debug} 
    … …  
    272271Dear ${LOGIN}, 
    273272 
    274   Simulation ${config_UserChoices_JobName} ${status} on supercomputer `hostname`. 
    275   Job started : ${PeriodDateBegin} 
    276   Job ended   : ${PeriodDateEnd} 
     273  Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. 
     274  Job started : ${DateBegin} 
     275  Job ended   : ${DateEnd} 
    277276  Output files are available in ${R_SAVE} 
    278277  Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} 
    … …  
    13541353function IGCM_sys_build_run_file { 
    13551354 
    1356 IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " 
     1355  IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " 
    13571356 
    13581357} 
    … …  
    15461545    else 
    15471546 
    1548         # Then first loop on the components for the coupler ie oasis 
    1549  
    1550         ## the coupler ie oasis must be the first one 
    1551         for comp in ${config_ListOfComponents[*]} ; do 
    1552  
    1553             eval ExeNameOut=\${config_Executable_${comp}[1]} 
     1547      # Then first loop on the components for the coupler ie oasis 
     1548 
     1549      ## the coupler ie oasis must be the first one 
     1550      for comp in ${config_ListOfComponents[*]} ; do 
     1551 
     1552        eval ExeNameOut=\${config_Executable_${comp}[1]} 
    15541553 
    15551554        # for CPL component only 
    1556             if [ "X${comp}" = "XCPL" ] ; then 
    1557                 eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} 
    1558                 echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file 
    1559             fi 
    1560         done 
     1555        if [ "X${comp}" = "XCPL" ] ; then 
     1556          eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} 
     1557          echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file 
     1558        fi 
     1559      done 
    15611560 
    15621561        # Then second loop on the components 
    15631562 
    1564         for comp in ${config_ListOfComponents[*]} ; do 
    1565  
    1566             eval ExeNameOut=\${config_Executable_${comp}[1]} 
    1567  
    1568             # Only if we really have an executable for the component and not the coupler ie oasis: 
    1569             if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then 
    1570                 eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} 
    1571                 echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file 
    1572             fi 
    1573         done 
    1574         IGCM_sys_Chmod u+x run_file 
    1575  
    1576         EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file" 
     1563      for comp in ${config_ListOfComponents[*]} ; do 
     1564 
     1565        eval ExeNameOut=\${config_Executable_${comp}[1]} 
     1566 
     1567        # Only if we really have an executable for the component and not the coupler ie oasis: 
     1568        if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then 
     1569          eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} 
     1570          echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file 
     1571        fi 
     1572      done 
     1573      IGCM_sys_Chmod u+x run_file 
     1574 
     1575      EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file" 
    15771576 
    15781577    fi 
    … …  
    15801579  else # Only one executable. launch it. 
    15811580 
    1582       for comp in ${config_ListOfComponents[*]} ; do 
    1583  
    1584           # Only if we really have an executable for the component : 
    1585           eval ExeNameOut=\${config_Executable_${comp}[1]} 
    1586           if ( [ "X${ExeNameOut}" != X\"\" ] ) ; then 
    1587  
    1588               echo "#!/bin/ksh" > script_${ExeNameOut}.ksh 
    1589               echo ""  >> script_${ExeNameOut}.ksh 
    1590               if ( ${OK_PARA_OMP} ) ; then 
    1591                   eval comp_proc_omp_loc=\${${comp}_PROC_OMP} 
    1592                   echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh 
    1593               fi 
    1594               if  ( ${OK_PARA_MPI} ) ; then 
    1595                   # Default : mpirun used if nb_proc gt 1 
    1596                   # pour sortie out/err par process 
    1597                   # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}"  >> script_${ExeNameOut}.ksh 
    1598                   echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh 
    1599                   IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh 
    1600                   EXECUTION="${HOST_MPIRUN_COMMAND} ./script_${ExeNameOut}.ksh" 
    1601               else 
    1602                   # Default : mpirun is NOT used if nb_proc eq 1 
    1603                   # pour sortie out/err par process 
    1604                   # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh 
    1605                   echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh 
    1606                   IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh 
    1607                   EXECUTION="time ./script_${ExeNameOut}.ksh" 
    1608               fi 
    1609           fi 
    1610       done 
     1581    for comp in ${config_ListOfComponents[*]} ; do 
     1582 
     1583      # Only if we really have an executable for the component : 
     1584      eval ExeNameOut=\${config_Executable_${comp}[1]} 
     1585      if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then 
     1586 
     1587        echo "#!/bin/ksh" > script_${ExeNameOut}.ksh 
     1588        echo ""  >> script_${ExeNameOut}.ksh 
     1589        if ( ${OK_PARA_OMP} ) ; then 
     1590          eval comp_proc_omp_loc=\${${comp}_PROC_OMP} 
     1591          echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh 
     1592        fi 
     1593        if  ( ${OK_PARA_MPI} ) ; then 
     1594          # Default : mpirun used if nb_proc gt 1 
     1595          # pour sortie out/err par process 
     1596          # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}"  >> script_${ExeNameOut}.ksh 
     1597          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh 
     1598          IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh 
     1599          EXECUTION="${HOST_MPIRUN_COMMAND} ./script_${ExeNameOut}.ksh" 
     1600        else 
     1601          # Default : mpirun is NOT used if nb_proc eq 1 
     1602          # pour sortie out/err par process 
     1603          # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh 
     1604          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh 
     1605          IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh 
     1606          EXECUTION="time ./script_${ExeNameOut}.ksh" 
     1607        fi 
     1608      fi 
     1609    done 
    16111610 
    16121611  fi 
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