Changeset 616 for trunk/libIGCM/AA_pack_debug

Timestamp:

03/29/12 10:56:09 (12 years ago)

Author:

sdipsl

Message:

• Merge libIGCM_MPI_OpenMP branch within the trunk
• trunk will shortly be tagged libIGCM_2.0_beta

File:

• trunk/libIGCM/AA_pack_debug (modified) (4 diffs)

trunk/libIGCM/AA_pack_debug

@@ -79 +79 @@
 #-Q- sx9mercure #!/bin/ksh
 #-Q- sx9mercure ######################
-#-Q- sx9mercure ## CESIUM   CEA ##
+#-Q- sx9mercure ## SX9MERCURE  CCRT ##
 #-Q- sx9mercure ######################
-#-Q- sx9mercure #MSUB -r PACKDEBUG    # Nom du job
-#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
-#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
-#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
-#-Q- sx9mercure #MSUB -E "-j o"
-#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
+#-Q- sx9mercure #PBS -N PACKDEBUG          # Nom du job
+#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
+#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
+#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
+#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
+#-Q- sx9mercure #PBS -q scalaire
 #-Q- titane #!/bin/ksh
 #-Q- titane ######################
@@ -220 +220 @@
 else
     CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
+    # warning! we copy useless files : Job_xxx, Script_output_xxx, ....
     IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
 fi
@@ -276 +277 @@
 # Clear txt file lists
 rm -f ${RUN_DIR}/liste_debug_files.txt
+rm -f ${RUN_DIR}/liste_out_files.txt
 rm -f ${RUN_DIR}/new_liste_debug_files.txt
 rm -f ${RUN_DIR}/liste_pack_*.txt
@@ -282 +284 @@
 find ${R_BUFR}/*/Debug -type f | sort >> ${RUN_DIR}/liste_debug_files.txt
 
-# Rename debug files we will work with using symlinks
+# Rename debug files we will work with using symlinks. use ???_ prefix ie NF-2
 #gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("cp --preserve " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
 gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
 
-# List renamed debug files
-find ${RUN_DIR} -name "???_*${JobName}*" -ls | sort -k 11 > ${RUN_DIR}/new_liste_debug_files.txt
+# Add out_ : output of execution files
+find ${R_BUFR}/Out -type f -name '*out_*' | sort >> ${RUN_DIR}/liste_out_files.txt
+
+# Rename out files we will work with using symlinks. use Out_ prefix ie NF-1
+gawk -F/ '{dest_name=$(NF-1)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_out_files.txt
+
+# List renamed debug files. Exclude Job_xxx files.
+find ${RUN_DIR} -name "???_*${JobName}*" -ls | grep -v Job_ | sort -k 11 > ${RUN_DIR}/new_liste_debug_files.txt
 
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