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source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_titane.ksh @ 717

Last change on this file since 717 was 717, checked in by sdipsl, 12 years ago
all available machine but IDRIS (will change soon) : print error code from mv, cp, ...
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1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5	# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#=========================================================
15	# The documentation of this file can be automatically generated
16	# if you use the prefix #D- for comments to be extracted.
17	# Extract with command: cat lib* \| grep "^#D-" \| cut -c "4-"
18	#=========================================================
19
20	#D-#==================================================
21	#D-LibIGCM_sys for Titane
22	#D-#==================================================
23	#D-
24	#D- This ksh library if a layer under some usefull
25	#D-environment variables and shell commands.
26	#D-All those definitions depend on host particularities.
27	#D-It manages a stack mechanism and test validity of operations.
28	#D-All function described bellow must be prefixed by IGCM_sys.
29
30	#====================================================
31	# libIGCM_sys PARAMETERS
32	#====================================================
33
34	#====================================================
35	# set DEBUG_sys to true to output calls of function
36	typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38	#====================================================
39	# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40	typeset -r DRYRUN=${DRYRUN:=0}
41
42	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43	# -------------------------------------------------------------------------------------
44	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
45	# \| \| Cp/Exe param files \| \| Chmod \| \|
46	# \| \| Qsub \| \| \| \|
47	# -------------------------------------------------------------------------------------
48	# \| 0 \| yes \| yes \| yes \| yes \|
49	# -------------------------------------------------------------------------------------
50	# \| 1 \| yes \| yes \| yes \| no \|
51	# -------------------------------------------------------------------------------------
52	# \| 2 \| yes \| yes \| no \| no \|
53	# -------------------------------------------------------------------------------------
54	# \| 3 \| yes \| no \| no \| no \|
55	# -------------------------------------------------------------------------------------
56
57	#=====================================================
58	# Global Variables :
59	#=====================================================
60	# Language : "fr" or "en"
61	typeset -r MYLANG="fr"
62
63	#=====================================================
64	# Host and user names
65	# $hostname ou hostname
66	typeset HOST=${HOST:=$( hostname )}
67	# $username ou whoami
68	typeset LOGIN=${LOGIN:=$( whoami )}
69	# $hostname of the MASTER job
70	typeset MASTER=titane
71
72	#D-
73	#D-#==================================================
74	#D-Program used in libIGCM
75	#D-#==================================================
76
77	# rsync with path
78	typeset -r RSYNC=/usr/bin/rsync
79	# RSYNC_opt args to rsync
80	typeset -r RSYNC_opt="-va"
81	# ie storage filesystem
82	typeset -r STOREHOST=${MASTER}
83
84	#====================================================
85	# Source default environment
86	#====================================================
87	. /etc/profile
88
89	#====================================================
90	# Set environment tools (ferret, nco, cdo)
91	#====================================================
92	. /home/cont003/p86ipsl/.atlas_env_titane_ksh
93	if ( [ X${LSB_QUEUE} = Xmono ] \|\| [ X${LSB_QUEUE} = Xmonoext ] ) ; then
94	module switch nco/3.9.4 nco/3.9.4_netcdf4
95	fi
96
97	#====================================================
98	# Specific for ocean additionnal diagnostic
99	export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
100	export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
101
102	#====================================================
103	# Host specific DIRECTORIES
104	#====================================================
105
106	# ============ CESIUM START ============ #
107
108	#====================================================
109	#- Mirror libIGCM from titane to cesium if needed
110	#ROOTSYS=$( echo ${libIGCM} \| gawk -F"/" '{print $3}' )
111	#if [ ! ${ROOTSYS} = "home" ] ; then
112	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
113	#else
114	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
115	#fi
116
117	#====================================================
118	#- libIGCM_POST
119	#if ( ${MirrorlibIGCM} ) ; then
120	# PATHlibIGCM=$( echo ${libIGCM} \| gawk -F"${LOGIN}/" '{print $2}' \| sed -e "s&/libIGCM&&" )
121	# typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
122	#else
123	# typeset -r libIGCM_POST=${libIGCM}
124	#fi
125
126	# ============ CESIUM END ============ #
127
128	#====================================================
129	#- MirrorlibIGCM for frontend
130	typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
131
132	#====================================================
133	#- libIGCM_POST for frontend
134	typeset -r libIGCM_POST=${libIGCM}
135
136	#====================================================
137	#- R_EXE (==> BIN_DIR = ${MODIPSL}/bin )
138	typeset -r R_EXE="${MODIPSL}/bin"
139
140	#====================================================
141	#- SUBMIT_DIR : submission dir
142	typeset SUBMIT_DIR=${SUBMIT_DIR:=${LS_SUBCWD}}
143
144	#====================================================
145	#- ARCHIVE (dedicated to large files)
146	typeset -r ARCHIVE=${CCCSTOREDIR}
147
148	#- ARCHIVE (dedicated to small/medium files)
149	typeset -r STORAGE=${CCCWORKDIR}
150
151	#====================================================
152	#- IN
153	typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
154	typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
155
156	#====================================================
157	#- R_OUT
158	typeset -r R_OUT=${ARCHIVE}/IGCM_OUT
159
160	#====================================================
161	#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
162	typeset -r R_FIG=${STORAGE}/IGCM_OUT
163
164	#====================================================
165	#- R_BUF (ONLY FOR double copy an scratch)
166	typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
167
168	#====================================================
169	#- BIG_DIR : BIG_DIR to store files waiting for rebuild
170	typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD}
171
172	#====================================================
173	#- OUT_POST
174	typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT
175
176	#====================================================
177	#- RUN_DIR_PATH : Temporary working directory (=> TMP)
178	if ( [ ! X${LSB_QUEUE} = Xmono ] && [ ! X${LSB_QUEUE} = Xmonoext ] ) ; then
179	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${LSB_JOBID}}
180	else
181	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${LSB_JOBID}}
182	fi
183
184	#====================================================
185	#- HOST_MPIRUN_COMMAND
186	typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"}
187
188	#====================================================
189	#- Max number of arguments passed to nco operator or demigration command
190	UNIX_MAX_LIMIT=360
191
192	#====================================================
193	#- set PackDefault true on titane
194	PackDefault=true
195
196	#====================================================
197	#- Number of core per node (max number of OpenMP task)
198	NUM_COREPERNODE=8
199
200	#====================================================
201	#- Default number of MPI task for IPSL coupled model
202	#- required for backward compatibility
203	#-
204	DEFAULT_NUM_PROC_OCE=5
205	DEFAULT_NUM_PROC_CPL=1
206	(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
207	DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
208
209
210	#D-#==================================================
211	#D-function IGCM_sys_RshMaster
212	#D-* Purpose: Connection to frontend machine.
213	#D-* Examples:
214	#D-
215	function IGCM_sys_RshMaster {
216	IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
217	/bin/ksh <<-EOF
218	export libIGCM=${libIGCM}
219	export DEBUG_debug=${DEBUG_debug}
220	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
221	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
222	${@}
223	EOF
224	if [ $? -gt 0 ] ; then
225	echo "IGCM_sys_RshMaster : erreur."
226	IGCM_debug_Exit "IGCM_sys_RshMaster"
227	fi
228	IGCM_debug_PopStack "IGCM_sys_RshMaster"
229	}
230
231	#D-#==================================================
232	#D-function IGCM_sys_RshArchive
233	#D-* Purpose: Archive rsh command
234	#D-* Examples:
235	#D-
236	function IGCM_sys_RshArchive {
237	IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
238	/bin/ksh <<-EOF
239	${@}
240	EOF
241	if [ $? -gt 0 ] ; then
242	echo "IGCM_sys_RshArchive : erreur."
243	IGCM_debug_Exit "IGCM_sys_RshArchive"
244	fi
245	IGCM_debug_PopStack "IGCM_sys_RshArchive"
246	}
247
248	#D-#==================================================
249	#D-function IGCM_sys_RshPost
250	#D-* Purpose: Post-process rsh command
251	#D-* Examples:
252	#D-
253	function IGCM_sys_RshPost {
254	IGCM_debug_PushStack "IGCM_sys_RshPost" $@
255	if ( $DEBUG_sys ) ; then
256	echo "IGCM_sys_RshPost :" $@
257	fi
258
259	#echo cat tmp_IGCM_sys_RshPost_$$ INITIAL
260	#cat tmp_IGCM_sys_RshPost_$$
261	# keep standard input (stdin) for the loop onto temporary file
262	cat >tmp_IGCM_sys_RshPost_$$
263
264	# ============ FRONTEND START ============ #
265
266	/bin/ksh <tmp_IGCM_sys_RshPost_$$
267	if [ $? -gt 0 ] ; then
268	echo "IGCM_sys_RshPost : erreur."
269	IGCM_debug_Exit "IGCM_sys_RshPost"
270	fi
271	# delete temporary file
272	\rm tmp_IGCM_sys_RshPost_$$
273
274	# ============ FRONTEND END ============ #
275
276	# ============ CESIUM START ============ #
277	# typeset NB_ESSAI DELAI status i
278	# if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
279	# #little hack so that rebuild submission is done on titane not an cesium
280	#
281	# libIGCM_POST_sed=$( echo $libIGCM_POST \| sed 's/\//\\\//g' )
282	# POST_DIR_sed=$( echo ${POST_DIR} \| sed 's/\//\\\//g' )
283	# sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
284	# sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
285	# sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
286	# sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
287	# \mv tmp.txt tmp_IGCM_sys_RshPost_$$
288	#
289	# echo cat tmp_IGCM_sys_RshPost_$$ AFTER
290	# cat tmp_IGCM_sys_RshPost_$$
291	#
292	# /bin/ksh <tmp_IGCM_sys_RshPost_$$
293	# if [ $? -gt 0 ] ; then
294	# echo "IGCM_sys_RshPost : erreur."
295	# IGCM_debug_Exit "IGCM_sys_RshPost"
296	# fi
297	# # delete temporary file
298	# \rm tmp_IGCM_sys_RshPost_$$
299	#
300	# else
301	# # number of tentative
302	# NB_ESSAI=10
303	# # time delay between tentative
304	# DELAI=10
305	# i=0
306	# while [ $i -ne $NB_ESSAI ] ; do
307	# ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
308	# status=$?
309	# if [ ${status} -ne 0 ];
310	# then
311	# sleep $DELAI
312	# else
313	# break
314	# fi
315	# let i=$i+1
316	# done
317	# # delete temporary file
318	# \rm tmp_IGCM_sys_RshPost_$$
319	#
320	# if [ ${status} -gt 0 ] ; then
321	# echo "IGCM_sys_RshPost : erreur."
322	# IGCM_debug_Exit "IGCM_sys_RshPost"
323	# fi
324	# fi
325
326	# ============ CESIUM END ============ #
327
328	IGCM_debug_PopStack "IGCM_sys_RshPost"
329	}
330
331	#D-#==================================================
332	#D-function IGCM_sys_SendMail
333	#D-* Purpose: Send mail when simulation is over
334	#D-* Examples:
335	#D-
336	function IGCM_sys_SendMail {
337	IGCM_debug_PushStack "IGCM_sys_SendMail" $@
338	if ( $DEBUG_sys ) ; then
339	echo "IGCM_sys_SendMail :" $@
340	fi
341
342	if ( ${ExitFlag} ) ; then
343	status=failed
344	else
345	status=completed
346	fi
347
348	cat << END_MAIL > job_end.mail
349	Dear ${LOGIN},
350
351	Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
352	Job started : ${DateBegin}
353	Job ended : ${DateEnd}
354	Output files are available in ${R_SAVE}
355	Files to be rebuild are temporarily available in ${REBUILD_DIR}
356	Pre-packed files are temporarily available in ${R_BUFR}
357	Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
358	END_MAIL
359
360	if [ ! -z ${config_UserChoices_MailName} ] ; then
361	mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
362	elif [ -f ~/.forward ] ; then
363	mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
364	fi
365	sleep 10
366	rm -f job_end.mail
367
368	if [ $? -gt 0 ] ; then
369	echo "IGCM_sys_SendMail : erreur."
370	IGCM_debug_Exit "IGCM_sys_SendMail"
371	fi
372	IGCM_debug_PopStack "IGCM_sys_SendMail"
373	}
374
375	#D-#==================================================
376	#D-function IGCM_sys_Mkdir
377	#D-* Purpose: Master locale mkdir command
378	#D-* Examples:
379	#D-
380	function IGCM_sys_Mkdir {
381	IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
382	if ( $DEBUG_sys ) ; then
383	echo "IGCM_sys_Mkdir :" $@
384	fi
385	if [ ! -d ${1} ]; then
386	\mkdir -p $1
387	if [ $? -gt 0 ] ; then
388	echo "IGCM_sys_Mkdir : erreur."
389	IGCM_debug_Exit "IGCM_sys_Mkdir"
390	fi
391	fi
392	# vérification :
393	if [ ! -d ${1} ] ; then
394	echo "IGCM_sys_Mkdir : erreur."
395	IGCM_debug_Exit "IGCM_sys_Mkdir"
396	fi
397	IGCM_debug_PopStack "IGCM_sys_Mkdir"
398	}
399
400	#D-#==================================================
401	#D-function IGCM_sys_MkdirArchive
402	#D-* Purpose: Mkdir on Archive
403	#D-* Examples:
404	#D-
405	function IGCM_sys_MkdirArchive {
406	IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
407	if ( $DEBUG_sys ) ; then
408	echo "IGCM_sys_MkdirArchive :" $@
409	fi
410	#- creation de repertoire sur le serveur fichier
411	if [ ! -d ${1} ]; then
412	\mkdir -p $1
413	if [ $? -gt 0 ] ; then
414	echo "IGCM_sys_MkdirArchive : erreur."
415	IGCM_debug_Exit "IGCM_sys_MkdirArchive"
416	fi
417	fi
418	IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
419	}
420
421	#D-#==================================================
422	#D-function IGCM_sys_MkdirWork
423	#D-* Purpose: Mkdir on Work
424	#D-* Examples:
425	#D-
426	function IGCM_sys_MkdirWork {
427	IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
428	if ( $DEBUG_sys ) ; then
429	echo "IGCM_sys_MkdirWork :" $@
430	fi
431	#- creation de repertoire sur le serveur fichier
432	if [ ! -d ${1} ]; then
433	\mkdir -p $1
434	if [ $? -gt 0 ] ; then
435	echo "IGCM_sys_MkdirWork : erreur."
436	IGCM_debug_Exit "IGCM_sys_MkdirWork"
437	fi
438	fi
439	IGCM_debug_PopStack "IGCM_sys_MkdirWork"
440	}
441
442	#D-#==================================================
443	#D-function IGCM_sys_Cd
444	#D-* Purpose: master cd command
445	#D-* Examples:
446	#D-
447	function IGCM_sys_Cd {
448	IGCM_debug_PushStack "IGCM_sys_Cd" $@
449	if ( $DEBUG_sys ) ; then
450	echo "IGCM_sys_Cd :" $@
451	fi
452	\cd $1
453	if [ $? -gt 0 ] ; then
454	echo "IGCM_sys_Cd : erreur."
455	IGCM_debug_Exit "IGCM_sys_Cd"
456	fi
457	IGCM_debug_PopStack "IGCM_sys_Cd"
458	}
459
460	#D-#==================================================
461	#D-function IGCM_sys_Chmod
462	#D-* Purpose: Chmod
463	#D-* Examples:
464	#D-
465	function IGCM_sys_Chmod {
466	IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
467	if ( $DEBUG_sys ) ; then
468	echo "IGCM_sys_Chmod :" $@
469	fi
470	if [ $DRYRUN -le 1 ]; then
471	\chmod $@
472	if [ $? -gt 0 ] ; then
473	echo "IGCM_sys_Chmod : erreur."
474	IGCM_debug_Exit "IGCM_sys_Chmod"
475	fi
476	else
477	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
478	fi
479	IGCM_debug_PopStack "IGCM_sys_Chmod"
480	}
481
482	#D-#==================================================
483	#D-function IGCM_sys_FileSize
484	#D-* Purpose: Filesize
485	#D-* Examples:
486	#D-
487	function IGCM_sys_FileSize {
488	IGCM_debug_PushStack "IGCM_sys_FileSize" $@
489
490	typeset sizeF
491	set +A sizeF -- $( ls -la ${1} )
492	if [ $? -gt 0 ] ; then
493	IGCM_debug_Exit "IGCM_sys_FileSize"
494	fi
495	eval ${2}=${sizeF[4]}
496
497	IGCM_debug_PopStack "IGCM_sys_FileSize"
498	}
499
500	#D-#==================================================
501	#D-function IGCM_sys_TestDir
502	#D-* Purpose: Test Directory that must exists
503	#D-* Examples:
504	#D-
505	function IGCM_sys_TestDir {
506	IGCM_debug_PushStack "IGCM_sys_TestDir" $@
507	if ( $DEBUG_sys ) ; then
508	echo "IGCM_sys_TestDir :" $@
509	fi
510	typeset ExistFlag
511	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
512	IGCM_debug_PopStack "IGCM_sys_TestDir"
513
514	return ${ExistFlag}
515	}
516
517	#D-#==================================================
518	#D-function IGCM_sys_TestDirArchive
519	#D-* Purpose: Test Directory that must exists on Archive
520	#D-* Examples:
521	#D-
522	function IGCM_sys_TestDirArchive {
523	IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
524	if ( $DEBUG_sys ) ; then
525	echo "IGCM_sys_TestDirArchive :" $@
526	fi
527	typeset ExistFlag
528	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
529	IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
530
531	return ${ExistFlag}
532	}
533
534	#D-#==================================================
535	#D-function IGCM_sys_IsFileArchived
536	#D-* Purpose: Test file that must NOT EXISTS on Archive
537	#D-* Examples:
538	#D-
539	function IGCM_sys_IsFileArchived {
540	IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
541	if ( $DEBUG_sys ) ; then
542	echo "IGCM_sys_IsFileArchived :" $@
543	fi
544	typeset IsArchivedFlag
545	IsArchivedFlag=$( [ X$( echo $1 \| grep ^\/ccc\/store ) != X ] && echo 0 \|\| echo 1 )
546	IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
547
548	return ${IsArchivedFlag}
549	}
550
551	#D-#==================================================
552	#D-function IGCM_sys_TestFileArchive
553	#D-* Purpose: Test file that must NOT EXISTS on Archive
554	#D-* Examples:
555	#D-
556	function IGCM_sys_TestFileArchive {
557	IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
558	typeset ExistFlag
559	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
560	IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
561
562	return ${ExistFlag}
563	}
564
565	#D-#==================================================
566	#D-function IGCM_sys_TestFileBuffer
567	#D-* Purpose: Test file that must NOT EXISTS on Buffer
568	#D-* Examples:
569	#D-
570	function IGCM_sys_TestFileBuffer {
571	IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
572	typeset ExistFlag
573	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
574	IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
575
576	return ${ExistFlag}
577	}
578
579	#D-#==================================================
580	#D-function IGCM_sys_CountFileArchive
581	#D-* Purpose: Count files on Archive filesystem
582	#D-* Examples:
583	#D-
584	function IGCM_sys_CountFileArchive {
585	IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
586	ls ${@} 2>/dev/null \| wc -l
587	if [ $? -gt 0 ] ; then
588	echo "IGCM_sys_CountFileArchive : erreur."
589	fi
590	IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
591	}
592
593	#D-#==================================================
594	#D-function IGCM_sys_CountFileBuffer
595	#D-* Purpose: Count files on Scratch filesystem
596	#D-* Examples:
597	#D-
598	function IGCM_sys_CountFileBuffer {
599	IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
600	ls ${@} 2>/dev/null \| wc -l
601	if [ $? -gt 0 ] ; then
602	echo "IGCM_sys_CountFileBuffer : erreur."
603	fi
604	IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
605	}
606
607	#D-#==================================================
608	#D-function IGCM_sys_Tree
609	#D-* Purpose: Tree directories with files on ${ARCHIVE}
610	#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
611	#D-
612	function IGCM_sys_Tree {
613	IGCM_debug_PushStack "IGCM_sys_Tree" $@
614	if ( $DEBUG_sys ) ; then
615	echo "IGCM_sys_Tree :" $@
616	fi
617
618	\ls -lR ${@}
619
620	IGCM_debug_PopStack "IGCM_sys_Tree"
621	}
622
623	#D-#==================================================
624	#D-function IGCM_sys_Tar
625	#D-* Purpose: master tar command
626	#D-* Examples:
627	#D-
628	function IGCM_sys_Tar {
629	IGCM_debug_PushStack "IGCM_sys_Tar" $@
630	if ( $DEBUG_sys ) ; then
631	echo "IGCM_sys_Tar :" $@
632	fi
633	\tar cf $@
634	if [ $? -gt 0 ] ; then
635	echo "IGCM_sys_Tar : erreur."
636	IGCM_debug_Exit "IGCM_sys_Tar"
637	fi
638	IGCM_debug_PopStack "IGCM_sys_Tar"
639	}
640
641	#D-#==================================================
642	#D-function IGCM_sys_UnTar
643	#D-* Purpose: master un-tar command
644	#D-* Examples:
645	#D-
646	function IGCM_sys_UnTar {
647	IGCM_debug_PushStack "IGCM_sys_UnTar" $@
648	if ( $DEBUG_sys ) ; then
649	echo "IGCM_sys_UnTar :" $@
650	fi
651	\tar xvf $1
652	if [ $? -gt 0 ] ; then
653	echo "IGCM_sys_UnTar : erreur."
654	IGCM_debug_Exit "IGCM_sys_UnTar"
655	fi
656	IGCM_debug_PopStack "IGCM_sys_UnTar"
657	}
658
659	#D-#==================================================
660	#D-function IGCM_sys_Qsub
661	#D-* Purpose: Qsub new job
662	#D-* Examples:
663	#D-
664	function IGCM_sys_Qsub {
665	IGCM_debug_PushStack "IGCM_sys_Qsub" $@
666	if ( $DEBUG_sys ) ; then
667	echo "IGCM_sys_Qsub :" $@
668	fi
669	typeset options
670	if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
671	options=" -o ${Script_Output} -e ${Script_Output}"
672	else
673	options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
674	fi
675
676	/usr/local/bin/ccc_msub ${options} < $1
677	if [ $? -gt 0 ] ; then
678	echo "IGCM_sys_Qsub : erreur ${options} $1"
679	IGCM_debug_Exit "IGCM_sys_Qsub"
680	fi
681	IGCM_debug_PopStack "IGCM_sys_Qsub"
682	}
683
684	#D-#==================================================
685	#D-function IGCM_sys_QsubPost
686	#D-* Purpose: Qsub new job on scalaire
687	#D-* Examples:
688	#D-
689	function IGCM_sys_QsubPost {
690	IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
691	if ( $DEBUG_sys ) ; then
692	echo "IGCM_sys_QsubPost :" $@
693	fi
694
695	# Need to export listVarEnv for cesium
696	# NO Need to export listVarEnv for titane
697	# ============ FRONTEND START ============ #
698
699	/usr/local/bin/ccc_msub -p ${BRIDGE_MSUB_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
700
701	# ============ FRONTEND END ============ #
702
703	# ============ CESIUM START ============ #
704	# typeset NB_ESSAI DELAI status i
705	# # number of tentative
706	# NB_ESSAI=10
707	# # time delay between tentative
708	# DELAI=10
709	# (( i = 0 ))
710	# while [ $i -lt $NB_ESSAI ] ; do
711	# /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job
712	# status=$?
713	# if [ ${status} -gt 0 ]; then
714	# sleep $DELAI
715	# else
716	# break
717	# fi
718	# (( i = i + 1 ))
719	# done
720	# ============ CESIUM END ============ #
721
722	if [ $? -gt 0 ] ; then
723	echo "IGCM_sys_QsubPost : erreur " $@
724	IGCM_debug_Exit "IGCM_sys_QsubPost"
725	fi
726	IGCM_debug_PopStack "IGCM_sys_QsubPost"
727	}
728
729	#D-*************************
730	#D- File transfer functions
731	#D-*************************
732	#D-
733
734	#D-#==================================================
735	#D-function IGCM_sys_Rsync_out
736	#D-* Purpose: treat return val of rsync
737	#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
738	#D- Error values and explanations can depend on your system version.
739	function IGCM_sys_Rsync_out {
740	RET=$1
741	if [ ! $RET ] ; then
742	echo "rsync error !"
743	fi
744
745	if [ $MYLANG = "fr" ]; then
746	case $RET in
747	0) return ;;
748	1) echo "Erreur de rsync ; RERR_SYNTAX : "
749	echo "Erreur de syntaxe ou d'utilisation."
750	return;;
751	2) echo "Erreur de rsync ; RERR_PROTOCOL : "
752	echo "Incompatibilité de protocole."
753	return;;
754	3) echo "Erreur de rsync ; RERR_FILESELECT 3"
755	echo "Erreurs lors de la sélection des fichiers d'entrée sortie et"
756	echo "répertoires"
757	return;;
758	4) echo "Erreur de rsync ; RERR_UNSUPPORTED"
759	echo "Action demandée non supportée : une tentative de manipulation de"
760	echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a"
761	echo "été faite ; ou une option qui est supportée par le client mais"
762	echo "pas par le serveur a été spécifiée."
763	return;;
764	10) echo "Erreur de rsync ; RERR_SOCKETIO"
765	echo "Erreur dans le socket d'entrée sortie"
766	return;;
767	11) echo "Erreur de rsync ; RERR_FILEIO"
768	echo "Erreur d'entrée sortie fichier"
769	return;;
770	12) echo "Erreur de rsync ; RERR_STREAMIO"
771	echo "Erreur dans flux de donnée du protocole rsync"
772	return;;
773	13) echo "Erreur de rsync ; RERR_MESSAGEIO"
774	echo "Erreur avec les diagnostics du programme"
775	return;;
776	14) echo "Erreur de rsync ; RERR_IPC"
777	echo "Erreur dans le code IPC"
778	return;;
779	20) echo "Erreur de rsync ; RERR_SIGNAL"
780	echo "SIGUSR1 ou SIGINT reçu"
781	return;;
782	21) echo "Erreur de rsync ; RERR_WAITCHILD"
783	echo "Une erreur retournée par waitpid()"
784	return;;
785	22) echo "Erreur de rsync ; RERR_MALLOC"
786	echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
787	return;;
788	23) echo ""
789	echo "Erreur fichier inexistant"
790	return;;
791	30) echo "Erreur de rsync ; RERR_TIMEOUT"
792	echo "Temps d'attente écoulé dans l'envoi/réception de données"
793	return;;
794	*) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET
795	return;;
796	esac
797	elif [ $MYLANG = "en" ] ; then
798	case $RET in
799	0) return;;
800	1) echo "rsync error : Syntax or usage error "
801	return;;
802	2) echo "rsync error : Protocol incompatibility "
803	return;;
804	3) echo "rsync error : Errors selecting input/output files, dirs"
805	return;;
806	4) echo "rsync error : Requested action not supported: an attempt"
807	echo "was made to manipulate 64-bit files on a platform that cannot support"
808	echo "them; or an option was specified that is supported by the client and"
809	echo "not by the server."
810	return;;
811	5) echo "rsync error : Error starting client-server protocol"
812	return;;
813	10) echo "rsync error : Error in socket I/O "
814	return;;
815	11) echo "rsync error : Error in file I/O "
816	return;;
817	12) echo "rsync error : Error in rsync protocol data stream "
818	return;;
819	13) echo "rsync error : Errors with program diagnostics "
820	return;;
821	14) echo "rsync error : Error in IPC code "
822	return;;
823	20) echo "rsync error : Received SIGUSR1 or SIGINT "
824	return;;
825	21) echo "rsync error : Some error returned by waitpid() "
826	return;;
827	22) echo "rsync error : Error allocating core memory buffers "
828	return;;
829	23) echo "rsync error : Partial transfer due to error"
830	return;;
831	24) echo "rsync error : Partial transfer due to vanished source files"
832	return;;
833	30) echo "rsync error : Timeout in data send/receive "
834	return;;
835	*) echo "rsync error : return code of rsync unknown :" $RET
836	return;;
837	esac
838	else
839	echo "unknown language $MYLANG."
840	return
841	fi
842	}
843
844	#D-#==================================================
845	#D-function IGCM_sys_Miror_libIGCM
846	#D-* Purpose: Mirror libIGCM PATH and lib to cesium
847	#D-* Examples:
848	#D-
849	function IGCM_sys_Mirror_libIGCM {
850	IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
851	if ( $DEBUG_sys ) ; then
852	echo "IGCM_sys_Mirror_libIGCM"
853	fi
854
855	typeset status DEST
856
857	mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
858
859	echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
860	${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
861	status=$?
862
863	if [ ${status} -gt 0 ] ; then
864	echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium."
865	cat out_rsync
866	fi
867	IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
868	}
869
870	#D-#==================================================
871	#D-function IGCM_sys_Cp
872	#D-* Purpose: generic cp
873	#D-* Examples:
874	#D-
875	function IGCM_sys_Cp {
876	IGCM_debug_PushStack "IGCM_sys_Cp" $@
877	if ( $DEBUG_sys ) ; then
878	echo "IGCM_sys_Cp :" $@
879	fi
880
881	typeset status
882
883	echo cp $@ > out_rsync 2>&1
884	\cp $@ >> out_rsync 2>&1
885	status=$?
886
887	if [ ${status} -gt 0 ] ; then
888	echo "IGCM_sys_Cp : error code ${status}"
889	cat out_rsync
890	IGCM_debug_Exit "IGCM_sys_Cp"
891	else
892	\rm out_rsync
893	fi
894	IGCM_debug_PopStack "IGCM_sys_Cp"
895	}
896
897	#D-#==================================================
898	#D-function IGCM_sys_Rm
899	#D-* Purpose: generic rm
900	#D-* Examples:
901	#D-
902	function IGCM_sys_Rm {
903	IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
904	if ( $DEBUG_sys ) ; then
905	echo "IGCM_sys_Rm :" $@
906	fi
907
908	typeset status
909
910	echo rm $@ > out_rsync 2>&1
911	\rm $@ >> out_rsync 2>&1
912	status=$?
913
914	if [ ${status} -gt 0 ] ; then
915	echo "IGCM_sys_Rm : error code ${status}"
916	cat out_rsync
917	IGCM_debug_Exit "IGCM_sys_Rm"
918	else
919	\rm out_rsync
920	fi
921	IGCM_debug_PopStack "IGCM_sys_Rm"
922	}
923
924	#D-#==================================================
925	#D-function IGCM_sys_RmRunDir
926	#D-* Purpose: rm tmpdir (dummy function most of the time batch
927	#D- scheduler will do the job)
928	#D-* Examples:
929	#D-
930	function IGCM_sys_RmRunDir {
931	IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
932	if ( $DEBUG_sys ) ; then
933	echo "IGCM_sys_RmRunDir :" $@
934	fi
935
936	typeset status
937
938	echo rm $@ > out_rsync 2>&1
939	\rm $@ >> out_rsync 2>&1
940	status=$?
941
942	if [ ${status} -gt 0 ] ; then
943	echo "IGCM_sys_RmRunDir : error code ${status}"
944	cat out_rsync
945	IGCM_debug_Exit "IGCM_sys_RmRunDir"
946	else
947	\rm out_rsync
948	fi
949	IGCM_debug_PopStack "IGCM_sys_RmRunDir"
950	}
951
952	#D-#==================================================
953	#D-function IGCM_sys_Mv
954	#D-* Purpose: generic move
955	#D-* Examples:
956	#D-
957	function IGCM_sys_Mv {
958	IGCM_debug_PushStack "IGCM_sys_Mv" $@
959	if ( $DEBUG_sys ) ; then
960	echo "IGCM_sys_Mv :" $@
961	fi
962
963	if [ $DRYRUN = 0 ]; then
964
965	typeset status
966
967	echo mv $@ > out_rsync 2>&1
968	\mv $@ >> out_rsync 2>&1
969	status=$?
970
971	if [ ${status} -gt 0 ] ; then
972	echo "IGCM_sys_Mv : error code ${status}"
973	cat out_rsync
974	IGCM_debug_Exit "IGCM_sys_Mv"
975	else
976	\rm out_rsync
977	fi
978	else
979	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
980	fi
981
982	IGCM_debug_PopStack "IGCM_sys_Mv"
983	}
984
985	#D-#==================================================
986	#D-function IGCM_sys_Put_Dir
987	#D-* Purpose: Copy a complete directory on $(ARCHIVE)
988	#D-* Examples:
989	#D-
990	function IGCM_sys_Put_Dir {
991	IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
992	if ( $DEBUG_sys ) ; then
993	echo "IGCM_sys_Put_Dir :" $@
994	fi
995	if [ $DRYRUN = 0 ]; then
996	if [ ! -d ${1} ] ; then
997	echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
998	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
999	return
1000	fi
1001
1002	typeset status
1003
1004	# Only if we use rsync
1005	#IGCM_sys_TestDirArchive $( dirname $2 )
1006	#
1007	#USUAL WAY
1008	\cp -r $1 $2 > out_rsync 2>&1
1009	status=$?
1010
1011	if [ ${status} -gt 0 ] ; then
1012	echo "IGCM_sys_Put_Dir : error code ${status}"
1013	cat out_rsync
1014	IGCM_debug_Exit "IGCM_sys_Put_Dir"
1015	else
1016	\rm out_rsync
1017	fi
1018	else
1019	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1020	fi
1021	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1022	}
1023
1024	#D-#==================================================
1025	#D-function IGCM_sys_Get_Dir
1026	#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1027	#D-* Examples:
1028	#D-
1029	function IGCM_sys_Get_Dir {
1030	IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1031	if ( $DEBUG_sys ) ; then
1032	echo "IGCM_sys_Get_Dir :" $@
1033	fi
1034	if [ $DRYRUN = 0 ]; then
1035	# if [ ! -d ${1} ] ; then
1036	# echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1037	# IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1038	# return
1039	# fi
1040
1041	typeset NB_ESSAI DELAI status i
1042	# number of tentative
1043	NB_ESSAI=3
1044	# time delay between tentative
1045	DELAI=2
1046
1047	# Only if we use rsync
1048	#IGCM_sys_TestDirArchive $( dirname $2 )
1049	#
1050	# USUAL WAY
1051	# add dmfind/dmget (to demigrate all offline files) :
1052	#dmfind $1 -state MIG -o -state OFL -o -state PAR \| dmget
1053	ccc_hsm get -r $1
1054
1055	i=0
1056	while [ $i -lt $NB_ESSAI ] ; do
1057	\cp -ur $1 $2 >> out_rsync 2>&1
1058	status=$?
1059	if [ ${status} -gt 0 ]; then
1060	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1061	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1062	sleep $DELAI
1063	else
1064	break
1065	fi
1066	(( i = i + 1 ))
1067	done
1068
1069	if [ ${status} -gt 0 ] ; then
1070	echo "IGCM_sys_Get_Dir : error."
1071	cat out_rsync
1072	IGCM_debug_Exit "IGCM_sys_Get_Dir"
1073	else
1074	\rm out_rsync
1075	fi
1076	else
1077	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1078	fi
1079	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1080	}
1081
1082	#D-#==================================================
1083	#D-function IGCM_sys_Get_Master
1084	#D-* Purpose: Copy a complete directory from MASTER filesystem
1085	#D-* Examples:
1086	#D-
1087	function IGCM_sys_Get_Master {
1088	IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1089	if ( $DEBUG_sys ) ; then
1090	echo "IGCM_sys_Get_Master :" $@
1091	fi
1092	if [ $DRYRUN = 0 ]; then
1093	if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1094	echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1095	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1096	return
1097	fi
1098
1099	typeset NB_ESSAI DELAI status i
1100	# number of tentative
1101	NB_ESSAI=3
1102	# time delay between tentative
1103	DELAI=2
1104
1105	i=0
1106	while [ $i -lt $NB_ESSAI ] ; do
1107	\cp -urL $1 $2 > out_rsync 2>&1
1108	status=$?
1109	if [ ${status} -gt 0 ]; then
1110	IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1111	IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1112	sleep $DELAI
1113	else
1114	break
1115	fi
1116	(( i = i + 1 ))
1117	done
1118
1119	if [ ${status} -gt 0 ] ; then
1120	echo "IGCM_sys_Get_Master : error."
1121	cat out_rsync
1122	IGCM_debug_Exit "IGCM_sys_Get_Master"
1123	else
1124	\rm out_rsync
1125	fi
1126	else
1127	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1128	fi
1129	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1130	}
1131
1132	#====================================================
1133	#- Call IGCM_sys_Mirror_libIGCM now !
1134	if ( $MirrorlibIGCM ) ; then
1135	IGCM_sys_Mirror_libIGCM
1136	fi
1137
1138	#D-#==================================================
1139	#D-function IGCM_sys_Put_Rest
1140	#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1141	#D- File and target directory must exist.
1142	#D-* Examples:
1143	#D-
1144	function IGCM_sys_Put_Rest {
1145	IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1146	if ( $DEBUG_sys ) ; then
1147	echo "IGCM_sys_Put_Rest :" $@
1148	fi
1149	if [ $DRYRUN = 0 ]; then
1150	if [ ! -f ${1} ] ; then
1151	echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1152	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1153	fi
1154
1155	typeset status
1156	#
1157	if [ X${JobType} = XRUN ] ; then
1158	IGCM_sys_Chmod 444 ${1}
1159	fi
1160
1161	#
1162	# USUAL WAY
1163	\cp $1 $2 > out_rsync 2>&1
1164	status=$?
1165
1166	# #RSYNC WITH NETWORK SSH CALL
1167	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1168	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1169
1170	# #RSYNC WITH NFS USE
1171	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1172	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1173
1174	# status=$?
1175	# IGCM_sys_Rsync_out $status
1176
1177	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1178	# (( status=status+$? ))
1179
1180	if [ ${status} -gt 0 ] ; then
1181	echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1182	cat out_rsync
1183	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1184	else
1185	\rm out_rsync
1186	fi
1187	else
1188	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1189	fi
1190	IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1191	}
1192
1193	#D-#==================================================
1194	#D-function IGCM_sys_PutBuffer_Rest
1195	#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1196	#D- File and target directory must exist.
1197	#D-* Examples:
1198	#D-
1199	function IGCM_sys_PutBuffer_Rest {
1200	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1201	if ( $DEBUG_sys ) ; then
1202	echo "IGCM_sys_PutBuffer_Rest :" $@
1203	fi
1204	if [ $DRYRUN = 0 ]; then
1205	if [ ! -f ${1} ] ; then
1206	echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1207	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1208	fi
1209
1210	typeset status
1211	#
1212	if [ X${JobType} = XRUN ] ; then
1213	IGCM_sys_Chmod 444 ${1}
1214	fi
1215
1216	#
1217	# USUAL WAY
1218	\cp $1 $2 > out_rsync 2>&1
1219	status=$?
1220
1221	if [ ${status} -gt 0 ] ; then
1222	echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1223	cat out_rsync
1224	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1225	else
1226	\rm out_rsync
1227	fi
1228	else
1229	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1230	fi
1231	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1232	}
1233
1234	#D-#==================================================
1235	#D-function IGCM_sys_Put_Out
1236	#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1237	#D-* Examples:
1238	#D-
1239	function IGCM_sys_Put_Out {
1240	IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1241	if ( $DEBUG_sys ) ; then
1242	echo "IGCM_sys_Put_Out :" $@
1243	fi
1244
1245	typeset NB_ESSAI DELAI status i exist skip
1246
1247	# number of tentative
1248	NB_ESSAI=3
1249	# time delay between tentative
1250	DELAI=2
1251
1252	if [ $DRYRUN = 0 ]; then
1253	if [ ! -f ${1} ] ; then
1254	echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1255	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1256	return 1
1257	fi
1258	#
1259	IGCM_sys_MkdirArchive $( dirname $2 )
1260	#
1261
1262	#=====================================================
1263	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1264	#=====================================================
1265
1266	#echo ${2} \| grep "${R_OUT}" > /dev/null 2>&1
1267	#if [ $? -eq 0 ] ; then
1268	# typeset WORKPATH FILEPATH
1269	# WORKPATH=$( dirname $2 \| sed -e "s\|${R_OUT}\|${R_BUF}\|" )
1270	# IGCM_sys_MkdirWork ${WORKPATH}
1271	# FILEPATH=${WORKPATH}/$( basename $2 )
1272	# #
1273	# IGCM_sys_Cp ${1} ${FILEPATH}
1274	#fi
1275
1276	if [ X${JobType} = XRUN ] ; then
1277	if [ X${3} = X ] ; then
1278	IGCM_sys_Chmod 444 ${1}
1279	fi
1280	fi
1281	#
1282
1283	exist=false
1284	skip=false
1285	if [ -f $2 ] ; then
1286	IGCM_debug_Print 1 "$2 already exist"
1287	#dmget $2
1288	ccc_hsm get $2
1289	exist=true
1290	if [ "X$( diff $1 $2 )" = X ] ; then
1291	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1292	skip=true
1293	else
1294	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1295	skip=false
1296	fi
1297	fi
1298	#
1299	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1300	IGCM_sys_Chmod u+w $2
1301	fi
1302
1303	if [ X${skip} = Xfalse ] ; then
1304	(( i = 0 ))
1305	while [ $i -lt $NB_ESSAI ] ; do
1306	# USUAL WAY
1307	\cp $1 $2 > out_rsync 2>&1
1308	status=$?
1309	if [ ${status} -gt 0 ]; then
1310	IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1311	IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1312	sleep $DELAI
1313	else
1314	break
1315	fi
1316	(( i = i + 1 ))
1317	done
1318	fi
1319
1320	# #RSYNC WITH NETWORK SSH CALL
1321	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1322	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1323
1324	# #RSYNC WITH NFS USE
1325	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1326	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1327
1328	# status=$?
1329	# IGCM_sys_Rsync_out $status
1330
1331	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1332	# (( status=status+$? ))
1333
1334	if [ ${status} -gt 0 ] ; then
1335	echo "IGCM_sys_Put_Out : error."
1336	cat out_rsync
1337	IGCM_debug_Exit "IGCM_sys_Put_Out"
1338	else
1339	\rm out_rsync
1340	fi
1341	else
1342	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1343	fi
1344	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1345	return 0
1346	}
1347
1348	#D-#==================================================
1349	#D-function IGCM_sys_PutBuffer_Out
1350	#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1351	#D-* Examples:
1352	#D-
1353	function IGCM_sys_PutBuffer_Out {
1354	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1355	if ( $DEBUG_sys ) ; then
1356	echo "IGCM_sys_PutBuffer_Out :" $@
1357	fi
1358
1359	typeset NB_ESSAI DELAI status i exist skip
1360
1361	# number of tentative
1362	NB_ESSAI=3
1363	# time delay between tentative
1364	DELAI=2
1365
1366	if [ $DRYRUN = 0 ]; then
1367	if [ ! -f ${1} ] ; then
1368	echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1369	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1370	return 1
1371	fi
1372	#
1373	IGCM_sys_Mkdir $( dirname $2 )
1374	#
1375
1376	if [ X${JobType} = XRUN ] ; then
1377	if [ X${3} = X ] ; then
1378	IGCM_sys_Chmod 444 ${1}
1379	fi
1380	fi
1381
1382	exist=false
1383	skip=false
1384	if [ -f $2 ] ; then
1385	IGCM_debug_Print 1 "$2 already exist"
1386	exist=true
1387	if [ "X$( diff $1 $2 )" = X ] ; then
1388	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1389	skip=true
1390	else
1391	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1392	skip=false
1393	fi
1394	fi
1395	#
1396	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1397	IGCM_sys_Chmod u+w $2
1398	fi
1399
1400	if [ X${skip} = Xfalse ] ; then
1401	i=0
1402	while [ $i -lt $NB_ESSAI ] ; do
1403	# USUAL WAY
1404	\cp $1 $2 > out_rsync 2>&1
1405	status=$?
1406	if [ ${status} -gt 0 ]; then
1407	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1408	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1409	sleep $DELAI
1410	else
1411	break
1412	fi
1413	(( i = i + 1 ))
1414	done
1415	fi
1416
1417	if [ ${status} -gt 0 ] ; then
1418	echo "IGCM_sys_PutBuffer_Out : error."
1419	cat out_rsync
1420	IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1421	else
1422	\rm out_rsync
1423	fi
1424	else
1425	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1426	fi
1427	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1428	return 0
1429	}
1430
1431	#D-#==================================================
1432	#D-function IGCM_sys_Get
1433	#D-* Purpose: Get a file from ${ARCHIVE}
1434	#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1435	#D- IGCM_sys_Get /l Array_contain_myfiles /destpath/
1436	function IGCM_sys_Get {
1437	IGCM_debug_PushStack "IGCM_sys_Get" $@
1438
1439	typeset DEST RET dm_liste ifile target file_work
1440	typeset NB_ESSAI DELAI status i
1441
1442	if ( $DEBUG_sys ) ; then
1443	echo "IGCM_sys_Get :" $@
1444	fi
1445
1446	# number of tentative
1447	NB_ESSAI=3
1448	# time delay between tentative
1449	DELAI=2
1450
1451	if [ $DRYRUN -le 2 ]; then
1452	if [ X${1} = X'/l' ] ; then
1453	# test if the first file is present in the old computation :
1454	eval set +A dm_liste \${${2}}
1455	else
1456	eval set +A dm_liste ${1}
1457	fi
1458	eval DEST=\${${#}}
1459
1460	#=====================================================
1461	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1462	#=====================================================
1463
1464	# Is it an R_OUT file (not R_IN) ?
1465	#echo ${dm_liste[0]} \| grep "${R_OUT}" > /dev/null 2>&1
1466	#if [ $? -eq 0 ] ; then
1467	# # Yes ? then we try to get it in SCRATCHDIR
1468	# set +A file_work $( echo ${dm_liste[*]} \| sed -e "s\|${R_OUT}\|${R_BUF}\|g" )
1469	# if [ -f ${file_work[0]} ] ; then
1470	# IGCM_sys_Cp ${file_work[*]} ${DEST}
1471	# IGCM_debug_PopStack "IGCM_sys_Get"
1472	# return
1473	# fi
1474	#fi
1475
1476	ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1477	status=$?
1478	if [ ${status} -gt 0 ] ; then
1479	echo "WARNING IGCM_sys_Get : error code ${status}"
1480	cat out_rsync
1481	echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1482	fi
1483
1484	#if [ ${status} -gt 0 ] ; then
1485	# if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1486	# cat out_rsync
1487	# echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1488	# sleep 30
1489	# echo "We try another time"
1490	## dmget ${dm_liste[*]} > out_rsync 2>&1
1491	# ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1492	# status=$?
1493	# if [ ${status} -gt 0 ] ; then
1494	# echo "ERROR IGCM_sys_Get : again demigration error :"
1495	# cat out_rsync
1496	# IGCM_debug_Exit "IGCM_sys_Get"
1497	# fi
1498	# else
1499	# echo "ERROR IGCM_sys_Get : demigration error :"
1500	# cat out_rsync
1501	# IGCM_debug_Exit "IGCM_sys_Get"
1502	# fi
1503	#fi
1504
1505	#USUAL WAY
1506	if [ X${1} = X'/l' ] ; then
1507	(( RET=0 ))
1508	for target in ${dm_liste[*]} ; do
1509	local_file=$( basename ${target} )
1510	(( i = 0 ))
1511	# test if the target file is present before the loop
1512	IGCM_sys_TestFileArchive ${target}
1513	status=$?
1514	if [ ${status} -gt 0 ] ; then
1515	echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1516	IGCM_debug_Exit "IGCM_sys_Get"
1517	else
1518	while [ $i -lt $NB_ESSAI ] ; do
1519	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1520	status=$?
1521	if [ ${status} -gt 0 ]; then
1522	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1523	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1524	sleep $DELAI
1525	else
1526	break
1527	fi
1528	(( i = i + 1 ))
1529	done
1530	(( RET = RET + status ))
1531	fi
1532	done
1533	else
1534	\cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1535	status=$?
1536	fi
1537
1538	# #RSYNC WITH NETWORK SSH CALL
1539	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1540	# ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1541
1542	# #RSYNC WITH NFS USE
1543	# echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1544	# ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1545
1546	# status=$?
1547	# IGCM_sys_Rsync_out $status
1548
1549	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1550	# (( RET=RET+$? ))
1551
1552	if [ ${RET} -gt 0 ] ; then
1553	echo "IGCM_sys_Get : error"
1554	cat out_rsync
1555	\rm out_rsync
1556	IGCM_debug_Exit "IGCM_sys_Get"
1557	else
1558	\rm out_rsync
1559	fi
1560	else
1561	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1562	fi
1563	IGCM_debug_PopStack "IGCM_sys_Get"
1564	}
1565
1566	#D-#==================================================
1567	#D-function IGCM_sys_GetBuffer
1568	#D-* Purpose: Get a file from ${SCRATCHDIR}
1569	#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1570	#D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1571	function IGCM_sys_GetBuffer {
1572	IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1573
1574	typeset DEST RET status buf_liste ifile target file_work
1575
1576	if ( $DEBUG_sys ) ; then
1577	echo "IGCM_sys_GetBuffer :" $@
1578	fi
1579	if [ $DRYRUN -le 2 ]; then
1580	if [ X${1} = X'/l' ] ; then
1581	# test if the first file is present in the old computation :
1582	eval set +A buf_liste \${${2}}
1583	else
1584	eval set +A buf_liste ${1}
1585	fi
1586	eval DEST=\${${#}}
1587
1588	#USUAL WAY
1589	if [ X${1} = X'/l' ] ; then
1590	(( RET=0 ))
1591	for target in ${buf_liste[*]} ; do
1592	local_file=$( basename ${target} )
1593	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1594	(( RET = RET + $? ))
1595	done
1596	else
1597	\cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1598	status=$?
1599	fi
1600
1601	if [ ${RET} -gt 0 ] ; then
1602	echo "IGCM_sys_GetBuffer : error"
1603	cat out_rsync
1604	\rm out_rsync
1605	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1606	else
1607	\rm out_rsync
1608	fi
1609	else
1610	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1611	fi
1612	IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1613	}
1614
1615	#D-#==================================================
1616	#D-function IGCM_sys_GetDate_FichWork
1617	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1618	#D-* Examples:
1619	#D-
1620	function IGCM_sys_GetDate_FichWork {
1621	IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1622	if ( $DEBUG_sys ) ; then
1623	echo "IGCM_sys_GetDate_FichWork :" $@
1624	fi
1625	typeset dateF
1626	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1627	eval ${2}=${dateF[5]}
1628
1629	# donne la date filesys d'un fichier sur la machine work
1630	IGCM_debug_PopStack "IGCM_sys_FichWork"
1631	}
1632
1633	#D-#==================================================
1634	#D-function IGCM_sys_GetDate_FichArchive
1635	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1636	#D-* Examples:
1637	#D-
1638	function IGCM_sys_GetDate_FichArchive {
1639	IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1640	if ( $DEBUG_sys ) ; then
1641	echo "IGCM_sys_GetDate_FichArchive :" $@
1642	fi
1643	typeset dateF
1644	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1645	eval ${2}=${dateF[5]}
1646
1647	IGCM_debug_PopStack "IGCM_sys_FichArchive"
1648	}
1649
1650	#D-#==================================================
1651	#D-function IGCM_sys_Dods_Rm
1652	#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1653	#D-* Examples:
1654	#D-
1655	function IGCM_sys_Dods_Rm {
1656	if ( $DEBUG_sys ) ; then
1657	echo "IGCM_sys_Dods_Rm :" $@
1658	fi
1659	typeset status
1660	if [ $DRYRUN = 0 ]; then
1661
1662	# if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1663	# echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1664	# echo "Nothing has been done."
1665	# return
1666	# fi
1667
1668	/ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1669	status=$?
1670
1671	# if [ ${status} -gt 0 ] ; then
1672	# echo "IGCM_sys_Dods_Rm : error."
1673	# cat out_dods_rm
1674	# IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1675	# else
1676	# rm out_dods_rm
1677	# fi
1678
1679	else
1680	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1681	fi
1682	return $status
1683	}
1684
1685	#D-#==================================================
1686	#D-function IGCM_sys_Dods_Cp
1687	#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1688	#D-* Examples:
1689	#D-
1690	function IGCM_sys_Dods_Cp {
1691	if ( $DEBUG_sys ) ; then
1692	echo "IGCM_sys_Dods_Cp :" $@
1693	fi
1694	typeset status
1695	if [ $DRYRUN = 0 ]; then
1696
1697	# if [ ! -d ${R_SAVE}/${1} ] ; then
1698	# echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1699	# echo "Nothing has been done."
1700	# return
1701	# fi
1702
1703	/ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1704	status=$?
1705
1706	# if [ ${status} -gt 0 ] ; then
1707	# echo "IGCM_sys_Dods_Cp : error."
1708	# cat out_dods_cp
1709	# IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1710	# else
1711	# rm out_dods_cp
1712	# fi
1713
1714	else
1715	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1716	fi
1717	return $status
1718	}
1719
1720	#D-#==================================================
1721	#D-function IGCM_sys_Put_Dods
1722	#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1723	#D-* Examples:
1724	#D-
1725	function IGCM_sys_Put_Dods {
1726	IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1727	if ( $DEBUG_sys ) ; then
1728	echo "IGCM_sys_Put_Dods :" $@
1729	fi
1730	#set -vx
1731	typeset status
1732	if [ $DRYRUN = 0 ]; then
1733	if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1734	echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1735	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1736	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1737	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1738	return
1739	fi
1740
1741	if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1742	echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1743	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1744	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1745	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1746	return
1747	fi
1748	#
1749	if [ -d ${R_SAVE}/${1} ] ; then
1750	cd ${R_SAVE}
1751	elif [ -d ${R_FIGR}/${1} ] ; then
1752	cd ${R_FIGR}
1753	fi
1754
1755	IGCM_sys_Dods_Rm ${1}
1756	IGCM_sys_Dods_Cp ${1}
1757	status=0
1758
1759	if [ ${status} -gt 0 ] ; then
1760	echo "IGCM_sys_Put_Dods : error."
1761	IGCM_debug_Exit "IGCM_sys_Put_Dods"
1762	fi
1763	else
1764	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1765	fi
1766	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1767	}
1768
1769	##############################################################
1770	# REBUILD OPERATOR
1771
1772	function IGCM_sys_rebuild {
1773	IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1774	if ( $DEBUG_sys ) ; then
1775	echo "IGCM_sys_rebuild :" $@
1776	fi
1777
1778	typeset NB_ESSAI DELAI status i
1779	# number of tentative
1780	NB_ESSAI=3
1781	# time delay between tentative
1782	DELAI=2
1783
1784	i=0
1785	while [ $i -lt $NB_ESSAI ] ; do
1786	/home/cont003/p86ipsl/X64/bin/rebuild -f -o $@ > out_rsync 2>&1
1787	status=$?
1788	if [ ${status} -gt 0 ] ; then
1789	IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1790	cat out_rsync
1791	\rm out_rsync
1792	IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1793	else
1794	\rm out_rsync
1795	break
1796	fi
1797	(( i = i + 1 ))
1798	done
1799
1800	if [ $? -gt 0 ] ; then
1801	echo "IGCM_sys_rebuild : rebuild error"
1802	IGCM_debug_Exit "rebuild"
1803	fi
1804
1805	IGCM_debug_PopStack "IGCM_sys_rebuild"
1806	}
1807
1808	function IGCM_sys_rebuild_station {
1809	IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1810	typeset i list_opt file_in file_out prefix_invert list_invert
1811	if ( $DEBUG_sys ) ; then
1812	echo "IGCM_sys_rebuild_station :" $@
1813	fi
1814	list_opt=$@
1815
1816	# Invert Axis : t,x -> x,t
1817	# t,pres,x -> x,t,pres
1818	# So that we can concatenate along x
1819	i=0
1820	for file_in in ${list_opt} ; do
1821	(( i = i + 1))
1822	[ ${i} = 1 ] && file_out=${file_in} && continue
1823	prefix_invert=$( basename ${file_in} .nc )
1824	IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1825	list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1826	done
1827
1828	# Concatenate
1829	IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1830
1831	# Re-ivert file
1832	IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1833
1834	# Station re-ordering is too expansive to be run within libICGM
1835	# This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1836	# This re-ordering must be done "in memory" by the cmorization process
1837	# Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1838	# BEGIN reordering
1839
1840	# Only LMDZ text output contains the exact ordering of the station.
1841	# We isolate this in the code below:
1842	# 0 38 -157.5000000000000 70.98591549295774
1843	# 0 54 27.49999999999999 67.18309859154928
1844	# 0 56 -62.50000000000001 82.39436619718309
1845	# 0 79 12.49999999999999 78.59154929577466
1846	# 0 116 -165.0000000000000 76.05633802816901
1847	# 0 117 130.0000000000000 70.98591549295774
1848	# 0 118 110.0000000000000 87.46478873239437
1849	# 1 40 4.999999999999995 51.97183098591550
1850	# typeset iStation iProc list_opt file_in file_out prefix_invert
1851	# typeset -Z4 j4
1852	# typeset -Z3 j3
1853
1854	# unset list_opt
1855	# set +A list_opt $@
1856
1857	# Filename after rebuild
1858	# file_out=${list_opt[0]}
1859	# Prefix of output files
1860	# prefix_invert=$( basename ${file_out} .nc )
1861	# Number of procs
1862	# num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} \| wc -l )
1863
1864	# iProc=0
1865	# while [ ${iProc} -lt ${num_proc} ] ; do
1866	# Array containing Station as a number
1867	# unset proc_stn
1868	# set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} \| sed -e "s/iophy_mpi rank ip lon lat //g" \| awk ' {print $2}' )
1869	# Number of stations produced by processor proc
1870	# stationLast=${#proc_stn[*]}
1871	# Proc number on 4 digits
1872	# j4=${iProc}
1873	# Init
1874	# iStation=0
1875	# while [ ${iStation} -lt ${stationLast} ] ; do
1876	# Station number on 3 digits
1877	# j3=${proc_stn[${iStation}]}
1878	# Extract station
1879	# Invert Axis : t,x -> x,t
1880	# t,pres,x -> x,t,pres
1881	# So that we can concatenate along x
1882	# IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1883	# (( iStation = iStation + 1 ))
1884	# done
1885	# (( iProc = iProc + 1 ))
1886	# done
1887
1888	# Concatenate all station along x
1889	# IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1890
1891	# Re-invert file
1892	# IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1893
1894	# END reordering
1895
1896	IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1897	}
1898
1899	############################################################
1900	# Activate Running Environnment Variables
1901
1902	function IGCM_sys_activ_variables {
1903	IGCM_debug_PushStack "IGCM_sys_activ_variables"
1904	if ( $DEBUG_sys ) ; then
1905	echo "IGCM_sys_activ_variables"
1906	fi
1907
1908	ulimit -s unlimited
1909
1910	export KMP_STACKSIZE=3g
1911	export KMP_LIBRARY=turnaround
1912	export MKL_SERIAL=YES
1913	unset MPI_PLACING_MODE
1914
1915	# add module load nb of threads for core placement
1916	(( max_omp = 0 ))
1917
1918	for comp in ${config_ListOfComponents[*]} ; do
1919	eval ExeNameIn=\${config_Executable_${comp}[0]}
1920	eval ExeNameOut=\${config_Executable_${comp}[1]}
1921
1922	# Only if we really have an executable for the component :
1923	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
1924	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
1925	if [ ${comp_proc_omp_loc} -gt ${max_omp} ] ; then
1926	(( max_omp = comp_proc_omp_loc ))
1927	fi
1928	fi
1929	done
1930
1931	( [ X${max_omp} = X4 ] \|\| [ X${max_omp} = X8 ] ) && { module load openmp/${max_omp}thds ; IGCM_debug_Print 1 "module load openmp/${max_omp}thds" ; }
1932
1933	IGCM_debug_PopStack "IGCM_sys_activ_variables"
1934	}
1935
1936	############################################################
1937	# Desactivate Running Environnment Variables
1938
1939	function IGCM_sys_desactiv_variables {
1940	IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
1941	if ( $DEBUG_sys ) ; then
1942	echo "IGCM_sys_desactiv_variables"
1943	fi
1944	IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
1945	}
1946
1947	############################################################
1948	# Build MPI/OMP scripts run file (dummy function)
1949
1950	function IGCM_sys_build_run_file {
1951
1952	IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
1953
1954	}
1955
1956	############################################################
1957	# Build MPI/OMP scripts
1958	function IGCM_sys_build_execution_scripts
1959	{
1960	IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
1961	if ( $DEBUG_sys ) ; then
1962	echo "IGCM_sys_build_execution_scripts " $@
1963	fi
1964	typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut
1965	typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc
1966	typeset num_corempi nombre_restant_node nombre_restant_comp
1967	typeset IGCM_OMP
1968
1969	if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then
1970	IGCM_debug_Exit "IGCM_sys_titane build_execution_scripts : Job_${config_UserChoices_JobName} doesn't exist in SUBMIT_DIR : ${SUBMIT_DIR} "
1971	fi
1972
1973	if ( ${OK_PARA_MPMD} ) ; then
1974
1975	if [ -f run_file ] ; then
1976	IGCM_sys_Rm -f run_file
1977	fi
1978	touch run_file
1979
1980	if ( ${OK_PARA_OMP} ) ; then
1981
1982	# Hosts treatment
1983
1984	${HOST_MPIRUN_COMMAND} hostname \| sort \| uniq > hosts.tmp
1985
1986	i=0
1987	rm -f hosts
1988	IGCM_debug_Print 1 "sys Titane, Hosts avaible :"
1989	for nodes in `cat hosts.tmp` ; do
1990	host[$i]=$nodes
1991	echo "${host[$i]} slots=8 max_slots=8" >> hosts
1992	IGCM_debug_Print 1 ${host[$i]}
1993	i=$((i+1))
1994	done
1995	rm -f hosts.tmp
1996
1997	listnodes=${host[*]}
1998
1999	EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts"
2000
2001	# Initialisation
2002
2003	init_node=y
2004	node_num_current=0
2005	start_num=0
2006	init_exec=n
2007
2008	# Test : if oasis is there, we put it at the first position
2009
2010	for comp in ${config_ListOfComponents[*]} ; do
2011
2012	if [ "X${comp}" = "XCPL" ] ; then
2013
2014	eval ExeNameIn=\${config_Executable_${comp}[0]}
2015	eval ExeNameOut=\${config_Executable_${comp}[1]}
2016
2017	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2018	echo "" >> script_${ExeNameOut}.ksh
2019	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2020	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2021	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2022	echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2023	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2024
2025	init_node=n
2026
2027	(( nombre_restant_node = NUM_COREPERNODE - 1 ))
2028	node_num_current=0
2029	node_current=${host[${node_num_current}]}
2030
2031	EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh"
2032
2033	init_exec=y
2034	start_num=1
2035
2036	fi
2037
2038	done
2039
2040	# Then loop on the components (except for oasis)
2041
2042	for comp in ${config_ListOfComponents[*]} ; do
2043
2044	eval ExeNameIn=\${config_Executable_${comp}[0]}
2045	eval ExeNameOut=\${config_Executable_${comp}[1]}
2046
2047	# Only if we really have an executable for the component :
2048	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2049
2050	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2051	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2052
2053	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2054	# echo "set -vx" >> script_${ExeNameOut}.ksh
2055	echo "" >> script_${ExeNameOut}.ksh
2056	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
2057	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
2058	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
2059	echo "export OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2060	echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh
2061	echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh
2062	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2063
2064	node_num=0
2065
2066	# We define the number of MPI process to be assigned for the component
2067
2068	nombre_restant_comp=${comp_proc_mpi_loc}
2069
2070	# Loop on the allocated nodes
2071
2072	for node in ${listnodes} ; do
2073
2074	# We go to the current node
2075	if [ ${node_num} = ${node_num_current} ] ; then
2076
2077	node_current=${host[${node_num_current}]}
2078
2079	# If first time on the node : initialisation
2080
2081	if [ ${init_node} = y ] ; then
2082	nombre_restant_node=${NUM_COREPERNODE}
2083	fi
2084
2085	# Test on the number of OMP threads
2086
2087	if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then
2088	(( node_num = node_num + 1 ))
2089	node_num_current=${node_num}
2090	init_node=y
2091	continue
2092	fi
2093
2094	# Number of MPI process to assign
2095
2096	(( num_corempi = nombre_restant_node / comp_proc_omp_loc ))
2097
2098	if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then
2099	num_corempi=${nombre_restant_comp}
2100	fi
2101
2102	(( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc ))
2103	(( nombre_restant_comp = nombre_restant_comp - num_corempi ))
2104
2105	if [ ${init_exec} = y ] ; then
2106	EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
2107	else
2108	EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
2109	init_exec=y
2110	fi
2111
2112	(( start_num = num_corempi + start_num ))
2113
2114	else
2115
2116	(( node_num = node_num + 1 ))
2117	continue
2118	fi
2119
2120	# Test on the number of core/process remaining on the node/component
2121
2122	if [ ${nombre_restant_node} = 0 ] ; then
2123	(( node_num = node_num + 1 ))
2124	node_num_current=${node_num}
2125	init_node=y
2126
2127	if [ ${nombre_restant_comp} = 0 ] ; then
2128	break 1
2129	fi
2130	else
2131
2132	node_num_current=${node_num}
2133	init_node=n
2134
2135	if [ ${nombre_restant_comp} = 0 ] ; then
2136	break 1
2137	fi
2138	fi
2139	done
2140	fi
2141	done
2142
2143	else
2144
2145	# Then first loop on the components for the coupler ie oasis
2146
2147	## the coupler ie oasis must be the first one
2148	for comp in ${config_ListOfComponents[*]} ; do
2149
2150	eval ExeNameOut=\${config_Executable_${comp}[1]}
2151
2152	# for CPL component only
2153	if [ "X${comp}" = "XCPL" ] ; then
2154	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2155	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file
2156	fi
2157	done
2158
2159	# Then second loop on the components
2160
2161	for comp in ${config_ListOfComponents[*]} ; do
2162
2163	eval ExeNameOut=\${config_Executable_${comp}[1]}
2164
2165	# Only if we really have an executable for the component and not the coupler ie oasis:
2166	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2167	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2168	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2169	fi
2170	done
2171	IGCM_sys_Chmod u+x run_file
2172
2173	EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file"
2174
2175	fi
2176
2177	else # Only one executable.
2178	# Check has to be added with :
2179	# Job :
2180	# #MSUB -n 8 # reservation des processeurs pour le job
2181	# #MSUB -N 4 # reservation des nodes pour le job
2182	# BATCH_NUM_PROC_TOT=32
2183	#
2184	# config.card :
2185	# ATM= (gcm.e, lmdz.x, 8MPI, 4OMP)
2186	#
2187	# tested with :
2188	# Job :
2189	# #MSUB -n 32
2190	# BATCH_NUM_PROC_TOT=32
2191	#
2192	# config.card :
2193	# ATM= (gcm.e, lmdz.x)
2194
2195
2196	for comp in ${config_ListOfComponents[*]} ; do
2197
2198	# Only if we really have an executable for the component :
2199	eval ExeNameOut=\${config_Executable_${comp}[1]}
2200	### if ( [ "X${ExeNameOut}" != X\"\" ] ) ; then
2201	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2202
2203	IGCM_OMP=1
2204
2205	if ( ${OK_PARA_OMP} ) ; then
2206	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2207	export OMP_NUM_THREADS=${comp_proc_omp_loc}
2208	IGCMG_OMP=${comp_proc_omp_loc}
2209	fi
2210	if ( ${OK_PARA_MPI} ) ; then
2211	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2212	# Default : mpirun used if nb_proc gt 1
2213	# pour sortie out/err par process ? more test required
2214	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh
2215	EXECUTION="${HOST_MPIRUN_COMMAND} -np ${comp_proc_mpi_loc} ./${ExeNameOut}"
2216	else
2217	# Check if BATCH_NUM_PROC_TOT = IGCMG_OMP
2218	if ( [ ${IGCM_OMP} -ne ${BATCH_NUM_PROC_TOT} ] ) ; then
2219	IGCM_debug_Print 1 "sys Titane : BATCH_NUM_PROC_TOT <> ${comp}_PROC_OMP : ${BATCH_NUM_PROC_TOT} <> ${BRIDGE_MSUB_NPROC} "
2220	IGCM_debug_Print 1 "sys Titane : Check #MSUB -n xx into Job"
2221	IGCM_debug_Exit "IGCM_sys_build_execution_scripts"
2222	fi
2223	# Default : mpirun is NOT used if nb_proc eq 1
2224	# pour sortie out/err par process ? more test required
2225	# echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2226	EXECUTION="/usr/bin/time ./${ExeNameOut}"
2227	fi
2228	fi
2229	done
2230
2231	fi
2232
2233	IGCM_debug_Print 1 "sys Titane : La commande d execution est "
2234	IGCM_debug_Print 1 "$EXECUTION"
2235
2236	IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2237	}
2238
2239	############################################################
2240	# Check of space available on temporary filesytems
2241	function IGCM_sys_check_quota {
2242	IGCM_debug_PushStack "IGCM_sys_check_quota"
2243	if ( $DEBUG_sys ) ; then
2244	echo "IGCM_sys_check_quota "
2245	fi
2246	# Limit of quota (in %)
2247	limit_quota=90
2248
2249	# Check of the volume
2250	volume_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $2}')
2251	volume_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $3}')
2252
2253	if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then
2254
2255	unit_avail=${volume_avail: -1}
2256	unit_quota=${volume_quota: -1}
2257
2258	if [ "${unit_quota}" = "*" ] ; then
2259	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2260	IGCM_debug_Print 1 "More than 100% of your quota is used"
2261	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2262	IGCM_debug_Print 1 "You must have more than 10% available to run"
2263	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2264	IGCM_debug_Verif_Exit
2265	fi
2266
2267	temp_avail=${volume_avail%%${volume_avail: -1}*}
2268	temp_quota=${volume_quota%%${volume_quota: -1}*}
2269
2270	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2271
2272	# Convertion
2273	if [ ${volume_avail: -1} = "T" ] ; then
2274	(( temp_avail = temp_avail * 1000000000000 ))
2275	elif [ ${volume_avail: -1} = "G" ] ; then
2276	(( temp_avail = temp_avail * 1000000000 ))
2277	elif [ ${volume_avail: -1} = "M" ] ; then
2278	(( temp_avail = temp_avail * 1000000 ))
2279	elif [ ${volume_avail: -1} = "k" ] ; then
2280	(( temp_avail = temp_avail * 1000 ))
2281	else
2282	(( temp_avail = volume_avail ))
2283	fi
2284	if [ ${volume_quota: -1} = "T" ] ; then
2285	(( temp_quota = temp_quota * 1000000000000 ))
2286	elif [ ${volume_quota: -1} = "G" ] ; then
2287	(( temp_quota = temp_quota * 1000000000 ))
2288	elif [ ${volume_quota: -1} = "M" ] ; then
2289	(( temp_quota = temp_quota * 1000000 ))
2290	elif [ ${volume_quota: -1} = "k" ] ; then
2291	(( temp_quota = temp_quota * 1000 ))
2292	else
2293	(( temp_quota = volume_quota ))
2294	fi
2295	fi
2296
2297	quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2298	# echo "volume ratio is " $quota_volume
2299
2300	if [ ${quota_volume} -ge ${limit_quota} ] ; then
2301	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2302	IGCM_debug_Print 1 "${quota_volume}% of your quota is used"
2303	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2304	IGCM_debug_Print 1 "You must have more than 10% available to run"
2305	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2306	IGCM_debug_Verif_Exit
2307	fi
2308
2309	fi
2310
2311	# Check of the number of inodes
2312
2313	inode_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $6}')
2314	inode_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $7}')
2315
2316	if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then
2317
2318	unit_avail=${inode_avail: -1}
2319	unit_quota=${inode_quota: -1}
2320
2321	if [ "${unit_quota}" = "*" ] ; then
2322	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2323	IGCM_debug_Print 1 "More than 100% of your quota is used"
2324	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2325	IGCM_debug_Print 1 "You must have more than 10% available to run"
2326	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2327	IGCM_debug_Verif_Exit
2328	fi
2329
2330	temp_avail=${inode_avail%%${inode_avail: -1}*}
2331	temp_quota=${inode_quota%%${inode_quota: -1}*}
2332
2333	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2334
2335	# Convertion
2336	if [ ${inode_avail: -1} = "T" ] ; then
2337	(( temp_avail = temp_avail * 1000000000000 ))
2338	elif [ ${inode_avail: -1} = "G" ] ; then
2339	(( temp_avail = temp_avail * 1000000000 ))
2340	elif [ ${inode_avail: -1} = "M" ] ; then
2341	(( temp_avail = temp_avail * 1000000 ))
2342	elif [ ${inode_avail: -1} = "k" ] ; then
2343	(( temp_avail = temp_avail * 1000 ))
2344	else
2345	(( temp_avail = inode_avail ))
2346	fi
2347
2348	if [ ${inode_quota: -1} = "T" ] ; then
2349	(( temp_quota = temp_quota * 1000000000000 ))
2350	elif [ ${inode_quota: -1} = "G" ] ; then
2351	(( temp_quota = temp_quota * 1000000000 ))
2352	elif [ ${inode_quota: -1} = "M" ] ; then
2353	(( temp_quota = temp_quota * 1000000 ))
2354	elif [ ${inode_quota: -1} = "k" ] ; then
2355	(( temp_quota = temp_quota * 1000 ))
2356	else
2357	(( temp_quota = inode_quota ))
2358	fi
2359	fi
2360	quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2361	# echo "inode ratio is " $quota_inode
2362
2363	if [ ${quota_inode} -ge ${limit_quota} ] ; then
2364	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2365	IGCM_debug_Print 1 "${quota_inode}% of your quota is used"
2366	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2367	IGCM_debug_Print 1 "You must have more than 10% available to run"
2368	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2369	IGCM_debug_Verif_Exit
2370	fi
2371
2372	fi
2373	IGCM_debug_PopStack "IGCM_sys_check_quota"
2374	}
2375
2376	##############################################################
2377	# NCO OPERATOR
2378
2379	function IGCM_sys_ncap2 {
2380	IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2381	if ( $DEBUG_sys ) ; then
2382	echo "IGCM_sys_ncap2 :" $@
2383	fi
2384
2385	typeset NB_ESSAI DELAI status i
2386	# number of tentative
2387	NB_ESSAI=3
2388	# time delay between tentative
2389	DELAI=2
2390
2391	i=0
2392	while [ $i -lt $NB_ESSAI ] ; do
2393	ncap2 "$@" > out_rsync 2>&1
2394	status=$?
2395	if [ ${status} -gt 0 ] ; then
2396	IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2397	cat out_rsync
2398	\rm out_rsync
2399	IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2400	else
2401	\rm out_rsync
2402	break
2403	fi
2404	(( i = i + 1 ))
2405	done
2406
2407	if [ ${status} -gt 0 ] ; then
2408	echo "IGCM_sys_ncap2 : ncap2 error"
2409	IGCM_debug_Exit "ncap2"
2410	fi
2411
2412	IGCM_debug_PopStack "IGCM_sys_ncap2"
2413	}
2414
2415	function IGCM_sys_ncatted {
2416	IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2417	if ( $DEBUG_sys ) ; then
2418	echo "IGCM_sys_ncatted :" $@
2419	fi
2420
2421	typeset NB_ESSAI DELAI status i
2422	# number of tentative
2423	NB_ESSAI=3
2424	# time delay between tentative
2425	DELAI=2
2426
2427	i=0
2428	while [ $i -lt $NB_ESSAI ] ; do
2429	ncatted "$@" > out_rsync 2>&1
2430	status=$?
2431	if [ ${status} -gt 0 ] ; then
2432	IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2433	cat out_rsync
2434	\rm out_rsync
2435	IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2436	else
2437	\rm out_rsync
2438	break
2439	fi
2440	(( i = i + 1 ))
2441	done
2442
2443	if [ ${status} -gt 0 ] ; then
2444	echo "IGCM_sys_ncatted : ncatted error"
2445	IGCM_debug_Exit "ncatted"
2446	fi
2447
2448	IGCM_debug_PopStack "IGCM_sys_ncatted"
2449	}
2450
2451	function IGCM_sys_ncbo {
2452	IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2453	if ( $DEBUG_sys ) ; then
2454	echo "IGCM_sys_ncbo :" $@
2455	fi
2456
2457	typeset NB_ESSAI DELAI status i
2458	# number of tentative
2459	NB_ESSAI=3
2460	# time delay between tentative
2461	DELAI=2
2462
2463	i=0
2464	while [ $i -lt $NB_ESSAI ] ; do
2465	ncbo $@ > out_rsync 2>&1
2466	status=$?
2467	if [ ${status} -gt 0 ] ; then
2468	IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2469	cat out_rsync
2470	\rm out_rsync
2471	IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2472	else
2473	\rm out_rsync
2474	break
2475	fi
2476	(( i = i + 1 ))
2477	done
2478
2479	if [ ${status} -gt 0 ] ; then
2480	echo "IGCM_sys_ncbo : ncbo error"
2481	IGCM_debug_Exit "ncbo"
2482	fi
2483
2484	IGCM_debug_PopStack "IGCM_sys_ncbo"
2485	}
2486
2487	function IGCM_sys_ncdiff {
2488	IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2489	if ( $DEBUG_sys ) ; then
2490	echo "IGCM_sys_ncdiff :" $@
2491	fi
2492
2493	typeset NB_ESSAI DELAI status i
2494	# number of tentative
2495	NB_ESSAI=3
2496	# time delay between tentative
2497	DELAI=2
2498
2499	i=0
2500	while [ $i -lt $NB_ESSAI ] ; do
2501	ncdiff $@ > out_rsync 2>&1
2502	status=$?
2503	if [ ${status} -gt 0 ] ; then
2504	IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2505	cat out_rsync
2506	\rm out_rsync
2507	IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2508	else
2509	\rm out_rsync
2510	break
2511	fi
2512	(( i = i + 1 ))
2513	done
2514
2515	if [ ${status} -gt 0 ] ; then
2516	echo "IGCM_sys_ncdiff : ncdiff error"
2517	IGCM_debug_Exit "ncdiff"
2518	fi
2519
2520	IGCM_debug_PopStack "IGCM_sys_ncdiff"
2521	}
2522
2523	function IGCM_sys_ncea {
2524	IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2525	if ( $DEBUG_sys ) ; then
2526	echo "IGCM_sys_ncea :" $@
2527	fi
2528
2529	typeset NB_ESSAI DELAI status i
2530	# number of tentative
2531	NB_ESSAI=3
2532	# time delay between tentative
2533	DELAI=2
2534
2535	i=0
2536	while [ $i -lt $NB_ESSAI ] ; do
2537	ncea $@ > out_rsync 2>&1
2538	status=$?
2539	if [ ${status} -gt 0 ] ; then
2540	IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2541	cat out_rsync
2542	\rm out_rsync
2543	IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2544	else
2545	\rm out_rsync
2546	break
2547	fi
2548	(( i = i + 1 ))
2549	done
2550
2551	if [ ${status} -gt 0 ] ; then
2552	echo "IGCM_sys_ncea : ncea error"
2553	IGCM_debug_Exit "ncea"
2554	fi
2555
2556	IGCM_debug_PopStack "IGCM_sys_ncea"
2557	}
2558
2559	function IGCM_sys_ncecat {
2560	IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2561	if ( $DEBUG_sys ) ; then
2562	echo "IGCM_sys_ncecat :" $@
2563	fi
2564
2565	typeset NB_ESSAI DELAI status i
2566	# number of tentative
2567	NB_ESSAI=3
2568	# time delay between tentative
2569	DELAI=2
2570
2571	i=0
2572	while [ $i -lt $NB_ESSAI ] ; do
2573	ncecat $@ > out_rsync 2>&1
2574	status=$?
2575	if [ ${status} -gt 0 ] ; then
2576	IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2577	cat out_rsync
2578	\rm out_rsync
2579	IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2580	else
2581	\rm out_rsync
2582	break
2583	fi
2584	(( i = i + 1 ))
2585	done
2586
2587	if [ ${status} -gt 0 ] ; then
2588	echo "IGCM_sys_ncecat : ncecat error"
2589	IGCM_debug_Exit "ncecat"
2590	fi
2591
2592	IGCM_debug_PopStack "IGCM_sys_ncecat"
2593	}
2594
2595	function IGCM_sys_ncflint {
2596	IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2597	if ( $DEBUG_sys ) ; then
2598	echo "IGCM_sys_ncflint :" $@
2599	fi
2600
2601	typeset NB_ESSAI DELAI status i
2602	# number of tentative
2603	NB_ESSAI=3
2604	# time delay between tentative
2605	DELAI=2
2606
2607	i=0
2608	while [ $i -lt $NB_ESSAI ] ; do
2609	ncflint $@ > out_rsync 2>&1
2610	status=$?
2611	if [ ${status} -gt 0 ] ; then
2612	IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2613	cat out_rsync
2614	\rm out_rsync
2615	IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2616	else
2617	\rm out_rsync
2618	break
2619	fi
2620	(( i = i + 1 ))
2621	done
2622
2623	if [ ${status} -gt 0 ] ; then
2624	echo "IGCM_sys_ncflint : ncflint error"
2625	IGCM_debug_Exit "ncflint"
2626	fi
2627
2628	IGCM_debug_PopStack "IGCM_sys_ncflint"
2629	}
2630
2631	function IGCM_sys_ncks {
2632	IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2633	if ( $DEBUG_sys ) ; then
2634	echo "IGCM_sys_ncks :" $@
2635	fi
2636
2637	typeset NB_ESSAI DELAI status i
2638	# number of tentative
2639	NB_ESSAI=3
2640	# time delay between tentative
2641	DELAI=2
2642
2643	i=0
2644	while [ $i -lt $NB_ESSAI ] ; do
2645	ncks $@ > out_rsync 2>&1
2646	status=$?
2647	if [ ${status} -gt 0 ] ; then
2648	IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2649	cat out_rsync
2650	\rm out_rsync
2651	IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2652	else
2653	\rm out_rsync
2654	break
2655	fi
2656	(( i = i + 1 ))
2657	done
2658
2659	if [ ${status} -gt 0 ] ; then
2660	echo "IGCM_sys_ncks : ncks error"
2661	IGCM_debug_Exit "ncks"
2662	fi
2663
2664	IGCM_debug_PopStack "IGCM_sys_ncks"
2665	}
2666
2667	function IGCM_sys_ncpdq {
2668	IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2669	if ( $DEBUG_sys ) ; then
2670	echo "IGCM_sys_ncpdq :" $@
2671	fi
2672
2673	typeset NB_ESSAI DELAI status i
2674	# number of tentative
2675	NB_ESSAI=3
2676	# time delay between tentative
2677	DELAI=2
2678
2679	i=0
2680	while [ $i -lt $NB_ESSAI ] ; do
2681	ncpdq $@ > out_rsync 2>&1
2682	status=$?
2683	if [ ${status} -gt 0 ] ; then
2684	IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2685	cat out_rsync
2686	\rm out_rsync
2687	IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2688	else
2689	\rm out_rsync
2690	break
2691	fi
2692	(( i = i + 1 ))
2693	done
2694
2695	if [ ${status} -gt 0 ] ; then
2696	echo "IGCM_sys_ncpdq : ncpdq error"
2697	IGCM_debug_Exit "ncpdq"
2698	fi
2699
2700	IGCM_debug_PopStack "IGCM_sys_ncpdq"
2701	}
2702
2703	function IGCM_sys_ncra {
2704	IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2705	if ( $DEBUG_sys ) ; then
2706	echo "IGCM_sys_ncra :" $@
2707	fi
2708
2709	typeset NB_ESSAI DELAI status i
2710	# number of tentative
2711	NB_ESSAI=3
2712	# time delay between tentative
2713	DELAI=2
2714
2715	i=0
2716	while [ $i -lt $NB_ESSAI ] ; do
2717	ncra $@ > out_rsync 2>&1
2718	status=$?
2719	if [ ${status} -gt 0 ] ; then
2720	IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2721	cat out_rsync
2722	\rm out_rsync
2723	IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2724	else
2725	\rm out_rsync
2726	break
2727	fi
2728	(( i = i + 1 ))
2729	done
2730
2731	if [ ${status} -gt 0 ] ; then
2732	echo "IGCM_sys_ncra : ncra error"
2733	IGCM_debug_Exit "ncra"
2734	fi
2735
2736	IGCM_debug_PopStack "IGCM_sys_ncra"
2737	}
2738
2739	function IGCM_sys_ncrcat {
2740	IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2741	if ( $DEBUG_sys ) ; then
2742	echo "IGCM_sys_ncrcat :" $@
2743	fi
2744
2745	typeset NB_ESSAI DELAI status i
2746	# number of tentative
2747	NB_ESSAI=3
2748	# time delay between tentative
2749	DELAI=2
2750
2751	i=0
2752	while [ $i -lt $NB_ESSAI ] ; do
2753	ncrcat $@ > out_rsync 2>&1
2754	status=$?
2755	if [ ${status} -gt 0 ] ; then
2756	IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2757	cat out_rsync
2758	\rm out_rsync
2759	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2760	else
2761	\rm out_rsync
2762	break
2763	fi
2764	(( i = i + 1 ))
2765	done
2766
2767	if [ ${status} -gt 0 ] ; then
2768	echo "IGCM_sys_ncrcat : ncrcat error"
2769	#IGCM_debug_Exit "ncrcat"
2770	fi
2771
2772	IGCM_debug_PopStack "IGCM_sys_ncrcat"
2773	}
2774
2775	function IGCM_sys_ncrename {
2776	IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2777	if ( $DEBUG_sys ) ; then
2778	echo "IGCM_sys_ncrename :" $@
2779	fi
2780
2781	typeset NB_ESSAI DELAI status i
2782	# number of tentative
2783	NB_ESSAI=3
2784	# time delay between tentative
2785	DELAI=2
2786
2787	i=0
2788	while [ $i -lt $NB_ESSAI ] ; do
2789	ncrename $@ > out_rsync 2>&1
2790	status=$?
2791	if [ ${status} -gt 0 ] ; then
2792	IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2793	cat out_rsync
2794	\rm out_rsync
2795	IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2796	else
2797	\rm out_rsync
2798	break
2799	fi
2800	(( i = i + 1 ))
2801	done
2802
2803	if [ ${status} -gt 0 ] ; then
2804	echo "IGCM_sys_ncrename : ncrename error"
2805	IGCM_debug_Exit "ncrename"
2806	fi
2807
2808	IGCM_debug_PopStack "IGCM_sys_ncrename"
2809	}
2810
2811	function IGCM_sys_ncwa {
2812	IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2813	if ( $DEBUG_sys ) ; then
2814	echo "IGCM_sys_ncwa :" $@
2815	fi
2816
2817	typeset NB_ESSAI DELAI status i
2818	# number of tentative
2819	NB_ESSAI=3
2820	# time delay between tentative
2821	DELAI=2
2822
2823	i=0
2824	while [ $i -lt $NB_ESSAI ] ; do
2825	ncwa $@ > out_rsync 2>&1
2826	status=$?
2827	if [ ${status} -gt 0 ] ; then
2828	IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2829	cat out_rsync
2830	\rm out_rsync
2831	IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2832	else
2833	\rm out_rsync
2834	break
2835	fi
2836	(( i = i + 1 ))
2837	done
2838
2839	if [ ${status} -gt 0 ] ; then
2840	echo "IGCM_sys_ncwa : ncwa error"
2841	IGCM_debug_Exit "ncwa"
2842	fi
2843
2844	IGCM_debug_PopStack "IGCM_sys_ncwa"
2845	}
2846
2847	##############################################################
2848	# CDO OPERATOR
2849
2850	function IGCM_sys_cdo {
2851	IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2852	if ( $DEBUG_sys ) ; then
2853	echo "IGCM_sys_cdo :" $@
2854	fi
2855
2856	typeset status
2857
2858	\cdo $@ > out_rsync 2>&1
2859	status=$?
2860	if [ ${status} -gt 0 ] ; then
2861	echo "IGCM_sys_cdo : error code ${status}"
2862	cat out_rsync
2863	\rm out_rsync
2864	IGCM_debug_PopStack "IGCM_sys_cdo"
2865	return 1
2866	else
2867	IGCM_debug_PopStack "IGCM_sys_cdo"
2868	return 0
2869	fi
2870
2871	IGCM_debug_PopStack "IGCM_sys_cdo"
2872	}

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