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source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_titane.ksh @ 714

Last change on this file since 714 was 714, checked in by sdipsl, 12 years ago
all machine : multiple tries over nco commands.
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1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5	# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#=========================================================
15	# The documentation of this file can be automatically generated
16	# if you use the prefix #D- for comments to be extracted.
17	# Extract with command: cat lib* \| grep "^#D-" \| cut -c "4-"
18	#=========================================================
19
20	#D-#==================================================
21	#D-LibIGCM_sys for Titane
22	#D-#==================================================
23	#D-
24	#D- This ksh library if a layer under some usefull
25	#D-environment variables and shell commands.
26	#D-All those definitions depend on host particularities.
27	#D-It manages a stack mechanism and test validity of operations.
28	#D-All function described bellow must be prefixed by IGCM_sys.
29
30	#====================================================
31	# libIGCM_sys PARAMETERS
32	#====================================================
33
34	#====================================================
35	# set DEBUG_sys to true to output calls of function
36	typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38	#====================================================
39	# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40	typeset -r DRYRUN=${DRYRUN:=0}
41
42	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43	# -------------------------------------------------------------------------------------
44	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
45	# \| \| Cp/Exe param files \| \| Chmod \| \|
46	# \| \| Qsub \| \| \| \|
47	# -------------------------------------------------------------------------------------
48	# \| 0 \| yes \| yes \| yes \| yes \|
49	# -------------------------------------------------------------------------------------
50	# \| 1 \| yes \| yes \| yes \| no \|
51	# -------------------------------------------------------------------------------------
52	# \| 2 \| yes \| yes \| no \| no \|
53	# -------------------------------------------------------------------------------------
54	# \| 3 \| yes \| no \| no \| no \|
55	# -------------------------------------------------------------------------------------
56
57	#=====================================================
58	# Global Variables :
59	#=====================================================
60	# Language : "fr" or "en"
61	typeset -r MYLANG="fr"
62
63	#=====================================================
64	# Host and user names
65	# $hostname ou hostname
66	typeset HOST=${HOST:=$( hostname )}
67	# $username ou whoami
68	typeset LOGIN=${LOGIN:=$( whoami )}
69	# $hostname of the MASTER job
70	typeset MASTER=titane
71
72	#D-
73	#D-#==================================================
74	#D-Program used in libIGCM
75	#D-#==================================================
76
77	# rsync with path
78	typeset -r RSYNC=/usr/bin/rsync
79	# RSYNC_opt args to rsync
80	typeset -r RSYNC_opt="-va"
81	# ie storage filesystem
82	typeset -r STOREHOST=${MASTER}
83
84	#====================================================
85	# Source default environment
86	#====================================================
87	. /etc/profile
88
89	#====================================================
90	# Set environment tools (ferret, nco, cdo)
91	#====================================================
92	. /home/cont003/p86ipsl/.atlas_env_titane_ksh
93	if ( [ X${LSB_QUEUE} = Xmono ] \|\| [ X${LSB_QUEUE} = Xmonoext ] ) ; then
94	module switch nco/3.9.4 nco/3.9.4_netcdf4
95	fi
96
97	#====================================================
98	# Specific for ocean additionnal diagnostic
99	export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
100	export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
101
102	#====================================================
103	# Host specific DIRECTORIES
104	#====================================================
105
106	# ============ CESIUM START ============ #
107
108	#====================================================
109	#- Mirror libIGCM from titane to cesium if needed
110	#ROOTSYS=$( echo ${libIGCM} \| gawk -F"/" '{print $3}' )
111	#if [ ! ${ROOTSYS} = "home" ] ; then
112	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
113	#else
114	# typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
115	#fi
116
117	#====================================================
118	#- libIGCM_POST
119	#if ( ${MirrorlibIGCM} ) ; then
120	# PATHlibIGCM=$( echo ${libIGCM} \| gawk -F"${LOGIN}/" '{print $2}' \| sed -e "s&/libIGCM&&" )
121	# typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
122	#else
123	# typeset -r libIGCM_POST=${libIGCM}
124	#fi
125
126	# ============ CESIUM END ============ #
127
128	#====================================================
129	#- MirrorlibIGCM for frontend
130	typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
131
132	#====================================================
133	#- libIGCM_POST for frontend
134	typeset -r libIGCM_POST=${libIGCM}
135
136	#====================================================
137	#- R_EXE (==> BIN_DIR = ${MODIPSL}/bin )
138	typeset -r R_EXE="${MODIPSL}/bin"
139
140	#====================================================
141	#- SUBMIT_DIR : submission dir
142	typeset SUBMIT_DIR=${SUBMIT_DIR:=${LS_SUBCWD}}
143
144	#====================================================
145	#- ARCHIVE (dedicated to large files)
146	typeset -r ARCHIVE=${CCCSTOREDIR}
147
148	#- ARCHIVE (dedicated to small/medium files)
149	typeset -r STORAGE=${CCCWORKDIR}
150
151	#====================================================
152	#- IN
153	typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
154	typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/dmnfs/cont003/p24data}
155
156	#====================================================
157	#- R_OUT
158	typeset -r R_OUT=${ARCHIVE}/IGCM_OUT
159
160	#====================================================
161	#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
162	typeset -r R_FIG=${STORAGE}/IGCM_OUT
163
164	#====================================================
165	#- R_BUF (ONLY FOR double copy an scratch)
166	typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
167
168	#====================================================
169	#- BIG_DIR : BIG_DIR to store files waiting for rebuild
170	typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD}
171
172	#====================================================
173	#- OUT_POST
174	typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT
175
176	#====================================================
177	#- RUN_DIR_PATH : Temporary working directory (=> TMP)
178	if ( [ ! X${LSB_QUEUE} = Xmono ] && [ ! X${LSB_QUEUE} = Xmonoext ] ) ; then
179	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${LSB_JOBID}}
180	else
181	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${LSB_JOBID}}
182	fi
183
184	#====================================================
185	#- HOST_MPIRUN_COMMAND
186	typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"}
187
188	#====================================================
189	#- Max number of arguments passed to nco operator or demigration command
190	UNIX_MAX_LIMIT=360
191
192	#====================================================
193	#- set PackDefault true on titane
194	PackDefault=true
195
196	#====================================================
197	#- Number of core per node (max number of OpenMP task)
198	NUM_COREPERNODE=8
199
200	#====================================================
201	#- Default number of MPI task for IPSL coupled model
202	#- required for backward compatibility
203	#-
204	DEFAULT_NUM_PROC_OCE=5
205	DEFAULT_NUM_PROC_CPL=1
206	(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
207	DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
208
209
210	#D-#==================================================
211	#D-function IGCM_sys_RshMaster
212	#D-* Purpose: Connection to frontend machine.
213	#D-* Examples:
214	#D-
215	function IGCM_sys_RshMaster {
216	IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
217	/bin/ksh <<-EOF
218	export libIGCM=${libIGCM}
219	export DEBUG_debug=${DEBUG_debug}
220	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
221	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
222	${@}
223	EOF
224	if [ $? -gt 0 ] ; then
225	echo "IGCM_sys_RshMaster : erreur."
226	IGCM_debug_Exit "IGCM_sys_RshMaster"
227	fi
228	IGCM_debug_PopStack "IGCM_sys_RshMaster"
229	}
230
231	#D-#==================================================
232	#D-function IGCM_sys_RshArchive
233	#D-* Purpose: Archive rsh command
234	#D-* Examples:
235	#D-
236	function IGCM_sys_RshArchive {
237	IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
238	/bin/ksh <<-EOF
239	${@}
240	EOF
241	if [ $? -gt 0 ] ; then
242	echo "IGCM_sys_RshArchive : erreur."
243	IGCM_debug_Exit "IGCM_sys_RshArchive"
244	fi
245	IGCM_debug_PopStack "IGCM_sys_RshArchive"
246	}
247
248	#D-#==================================================
249	#D-function IGCM_sys_RshPost
250	#D-* Purpose: Post-process rsh command
251	#D-* Examples:
252	#D-
253	function IGCM_sys_RshPost {
254	IGCM_debug_PushStack "IGCM_sys_RshPost" $@
255	if ( $DEBUG_sys ) ; then
256	echo "IGCM_sys_RshPost :" $@
257	fi
258
259	#echo cat tmp_IGCM_sys_RshPost_$$ INITIAL
260	#cat tmp_IGCM_sys_RshPost_$$
261	# keep standard input (stdin) for the loop onto temporary file
262	cat >tmp_IGCM_sys_RshPost_$$
263
264	# ============ FRONTEND START ============ #
265
266	/bin/ksh <tmp_IGCM_sys_RshPost_$$
267	if [ $? -gt 0 ] ; then
268	echo "IGCM_sys_RshPost : erreur."
269	IGCM_debug_Exit "IGCM_sys_RshPost"
270	fi
271	# delete temporary file
272	\rm tmp_IGCM_sys_RshPost_$$
273
274	# ============ FRONTEND END ============ #
275
276	# ============ CESIUM START ============ #
277	# typeset NB_ESSAI DELAI status i
278	# if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
279	# #little hack so that rebuild submission is done on titane not an cesium
280	#
281	# libIGCM_POST_sed=$( echo $libIGCM_POST \| sed 's/\//\\\//g' )
282	# POST_DIR_sed=$( echo ${POST_DIR} \| sed 's/\//\\\//g' )
283	# sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
284	# sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
285	# sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
286	# sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
287	# \mv tmp.txt tmp_IGCM_sys_RshPost_$$
288	#
289	# echo cat tmp_IGCM_sys_RshPost_$$ AFTER
290	# cat tmp_IGCM_sys_RshPost_$$
291	#
292	# /bin/ksh <tmp_IGCM_sys_RshPost_$$
293	# if [ $? -gt 0 ] ; then
294	# echo "IGCM_sys_RshPost : erreur."
295	# IGCM_debug_Exit "IGCM_sys_RshPost"
296	# fi
297	# # delete temporary file
298	# \rm tmp_IGCM_sys_RshPost_$$
299	#
300	# else
301	# # number of tentative
302	# NB_ESSAI=10
303	# # time delay between tentative
304	# DELAI=10
305	# i=0
306	# while [ $i -ne $NB_ESSAI ] ; do
307	# ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
308	# status=$?
309	# if [ ${status} -ne 0 ];
310	# then
311	# sleep $DELAI
312	# else
313	# break
314	# fi
315	# let i=$i+1
316	# done
317	# # delete temporary file
318	# \rm tmp_IGCM_sys_RshPost_$$
319	#
320	# if [ ${status} -gt 0 ] ; then
321	# echo "IGCM_sys_RshPost : erreur."
322	# IGCM_debug_Exit "IGCM_sys_RshPost"
323	# fi
324	# fi
325
326	# ============ CESIUM END ============ #
327
328	IGCM_debug_PopStack "IGCM_sys_RshPost"
329	}
330
331	#D-#==================================================
332	#D-function IGCM_sys_SendMail
333	#D-* Purpose: Send mail when simulation is over
334	#D-* Examples:
335	#D-
336	function IGCM_sys_SendMail {
337	IGCM_debug_PushStack "IGCM_sys_SendMail" $@
338	if ( $DEBUG_sys ) ; then
339	echo "IGCM_sys_SendMail :" $@
340	fi
341
342	if ( ${ExitFlag} ) ; then
343	status=failed
344	else
345	status=completed
346	fi
347
348	cat << END_MAIL > job_end.mail
349	Dear ${LOGIN},
350
351	Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
352	Job started : ${DateBegin}
353	Job ended : ${DateEnd}
354	Output files are available in ${R_SAVE}
355	Files to be rebuild are temporarily available in ${REBUILD_DIR}
356	Pre-packed files are temporarily available in ${R_BUFR}
357	Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
358	END_MAIL
359
360	if [ ! -z ${config_UserChoices_MailName} ] ; then
361	mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
362	elif [ -f ~/.forward ] ; then
363	mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
364	fi
365	sleep 10
366	rm -f job_end.mail
367
368	if [ $? -gt 0 ] ; then
369	echo "IGCM_sys_SendMail : erreur."
370	IGCM_debug_Exit "IGCM_sys_SendMail"
371	fi
372	IGCM_debug_PopStack "IGCM_sys_SendMail"
373	}
374
375	#D-#==================================================
376	#D-function IGCM_sys_Mkdir
377	#D-* Purpose: Master locale mkdir command
378	#D-* Examples:
379	#D-
380	function IGCM_sys_Mkdir {
381	IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
382	if ( $DEBUG_sys ) ; then
383	echo "IGCM_sys_Mkdir :" $@
384	fi
385	if [ ! -d ${1} ]; then
386	\mkdir -p $1
387	if [ $? -gt 0 ] ; then
388	echo "IGCM_sys_Mkdir : erreur."
389	IGCM_debug_Exit "IGCM_sys_Mkdir"
390	fi
391	fi
392	# vérification :
393	if [ ! -d ${1} ] ; then
394	echo "IGCM_sys_Mkdir : erreur."
395	IGCM_debug_Exit "IGCM_sys_Mkdir"
396	fi
397	IGCM_debug_PopStack "IGCM_sys_Mkdir"
398	}
399
400	#D-#==================================================
401	#D-function IGCM_sys_MkdirArchive
402	#D-* Purpose: Mkdir on Archive
403	#D-* Examples:
404	#D-
405	function IGCM_sys_MkdirArchive {
406	IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
407	if ( $DEBUG_sys ) ; then
408	echo "IGCM_sys_MkdirArchive :" $@
409	fi
410	#- creation de repertoire sur le serveur fichier
411	if [ ! -d ${1} ]; then
412	\mkdir -p $1
413	if [ $? -gt 0 ] ; then
414	echo "IGCM_sys_MkdirArchive : erreur."
415	IGCM_debug_Exit "IGCM_sys_MkdirArchive"
416	fi
417	fi
418	IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
419	}
420
421	#D-#==================================================
422	#D-function IGCM_sys_MkdirWork
423	#D-* Purpose: Mkdir on Work
424	#D-* Examples:
425	#D-
426	function IGCM_sys_MkdirWork {
427	IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
428	if ( $DEBUG_sys ) ; then
429	echo "IGCM_sys_MkdirWork :" $@
430	fi
431	#- creation de repertoire sur le serveur fichier
432	if [ ! -d ${1} ]; then
433	\mkdir -p $1
434	if [ $? -gt 0 ] ; then
435	echo "IGCM_sys_MkdirWork : erreur."
436	IGCM_debug_Exit "IGCM_sys_MkdirWork"
437	fi
438	fi
439	IGCM_debug_PopStack "IGCM_sys_MkdirWork"
440	}
441
442	#D-#==================================================
443	#D-function IGCM_sys_Cd
444	#D-* Purpose: master cd command
445	#D-* Examples:
446	#D-
447	function IGCM_sys_Cd {
448	IGCM_debug_PushStack "IGCM_sys_Cd" $@
449	if ( $DEBUG_sys ) ; then
450	echo "IGCM_sys_Cd :" $@
451	fi
452	\cd $1
453	if [ $? -gt 0 ] ; then
454	echo "IGCM_sys_Cd : erreur."
455	IGCM_debug_Exit "IGCM_sys_Cd"
456	fi
457	IGCM_debug_PopStack "IGCM_sys_Cd"
458	}
459
460	#D-#==================================================
461	#D-function IGCM_sys_Chmod
462	#D-* Purpose: Chmod
463	#D-* Examples:
464	#D-
465	function IGCM_sys_Chmod {
466	IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
467	if ( $DEBUG_sys ) ; then
468	echo "IGCM_sys_Chmod :" $@
469	fi
470	if [ $DRYRUN -le 1 ]; then
471	\chmod $@
472	if [ $? -gt 0 ] ; then
473	echo "IGCM_sys_Chmod : erreur."
474	IGCM_debug_Exit "IGCM_sys_Chmod"
475	fi
476	else
477	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
478	fi
479	IGCM_debug_PopStack "IGCM_sys_Chmod"
480	}
481
482	#D-#==================================================
483	#D-function IGCM_sys_FileSize
484	#D-* Purpose: Filesize
485	#D-* Examples:
486	#D-
487	function IGCM_sys_FileSize {
488	IGCM_debug_PushStack "IGCM_sys_FileSize" $@
489
490	typeset sizeF
491	set +A sizeF -- $( ls -la ${1} )
492	if [ $? -gt 0 ] ; then
493	IGCM_debug_Exit "IGCM_sys_FileSize"
494	fi
495	eval ${2}=${sizeF[4]}
496
497	IGCM_debug_PopStack "IGCM_sys_FileSize"
498	}
499
500	#D-#==================================================
501	#D-function IGCM_sys_TestDir
502	#D-* Purpose: Test Directory that must exists
503	#D-* Examples:
504	#D-
505	function IGCM_sys_TestDir {
506	IGCM_debug_PushStack "IGCM_sys_TestDir" $@
507	if ( $DEBUG_sys ) ; then
508	echo "IGCM_sys_TestDir :" $@
509	fi
510	typeset ExistFlag
511	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
512	IGCM_debug_PopStack "IGCM_sys_TestDir"
513
514	return ${ExistFlag}
515	}
516
517	#D-#==================================================
518	#D-function IGCM_sys_TestDirArchive
519	#D-* Purpose: Test Directory that must exists on Archive
520	#D-* Examples:
521	#D-
522	function IGCM_sys_TestDirArchive {
523	IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
524	if ( $DEBUG_sys ) ; then
525	echo "IGCM_sys_TestDirArchive :" $@
526	fi
527	typeset ExistFlag
528	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
529	IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
530
531	return ${ExistFlag}
532	}
533
534	#D-#==================================================
535	#D-function IGCM_sys_IsFileArchived
536	#D-* Purpose: Test file that must NOT EXISTS on Archive
537	#D-* Examples:
538	#D-
539	function IGCM_sys_IsFileArchived {
540	IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
541	if ( $DEBUG_sys ) ; then
542	echo "IGCM_sys_IsFileArchived :" $@
543	fi
544	typeset IsArchivedFlag
545	IsArchivedFlag=$( [ X$( echo $1 \| grep ^\/ccc\/store ) != X ] && echo 0 \|\| echo 1 )
546	IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
547
548	return ${IsArchivedFlag}
549	}
550
551	#D-#==================================================
552	#D-function IGCM_sys_TestFileArchive
553	#D-* Purpose: Test file that must NOT EXISTS on Archive
554	#D-* Examples:
555	#D-
556	function IGCM_sys_TestFileArchive {
557	IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
558	typeset ExistFlag
559	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
560	IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
561
562	return ${ExistFlag}
563	}
564
565	#D-#==================================================
566	#D-function IGCM_sys_TestFileBuffer
567	#D-* Purpose: Test file that must NOT EXISTS on Buffer
568	#D-* Examples:
569	#D-
570	function IGCM_sys_TestFileBuffer {
571	IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
572	typeset ExistFlag
573	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
574	IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
575
576	return ${ExistFlag}
577	}
578
579	#D-#==================================================
580	#D-function IGCM_sys_CountFileArchive
581	#D-* Purpose: Count files on Archive filesystem
582	#D-* Examples:
583	#D-
584	function IGCM_sys_CountFileArchive {
585	IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
586	ls ${@} 2>/dev/null \| wc -l
587	if [ $? -gt 0 ] ; then
588	echo "IGCM_sys_CountFileArchive : erreur."
589	fi
590	IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
591	}
592
593	#D-#==================================================
594	#D-function IGCM_sys_CountFileBuffer
595	#D-* Purpose: Count files on Scratch filesystem
596	#D-* Examples:
597	#D-
598	function IGCM_sys_CountFileBuffer {
599	IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
600	ls ${@} 2>/dev/null \| wc -l
601	if [ $? -gt 0 ] ; then
602	echo "IGCM_sys_CountFileBuffer : erreur."
603	fi
604	IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
605	}
606
607	#D-#==================================================
608	#D-function IGCM_sys_Tree
609	#D-* Purpose: Tree directories with files on ${ARCHIVE}
610	#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
611	#D-
612	function IGCM_sys_Tree {
613	IGCM_debug_PushStack "IGCM_sys_Tree" $@
614	if ( $DEBUG_sys ) ; then
615	echo "IGCM_sys_Tree :" $@
616	fi
617
618	\ls -lR ${@}
619
620	IGCM_debug_PopStack "IGCM_sys_Tree"
621	}
622
623	#D-#==================================================
624	#D-function IGCM_sys_Tar
625	#D-* Purpose: master tar command
626	#D-* Examples:
627	#D-
628	function IGCM_sys_Tar {
629	IGCM_debug_PushStack "IGCM_sys_Tar" $@
630	if ( $DEBUG_sys ) ; then
631	echo "IGCM_sys_Tar :" $@
632	fi
633	\tar cf $@
634	if [ $? -gt 0 ] ; then
635	echo "IGCM_sys_Tar : erreur."
636	IGCM_debug_Exit "IGCM_sys_Tar"
637	fi
638	IGCM_debug_PopStack "IGCM_sys_Tar"
639	}
640
641	#D-#==================================================
642	#D-function IGCM_sys_UnTar
643	#D-* Purpose: master un-tar command
644	#D-* Examples:
645	#D-
646	function IGCM_sys_UnTar {
647	IGCM_debug_PushStack "IGCM_sys_UnTar" $@
648	if ( $DEBUG_sys ) ; then
649	echo "IGCM_sys_UnTar :" $@
650	fi
651	\tar xvf $1
652	if [ $? -gt 0 ] ; then
653	echo "IGCM_sys_UnTar : erreur."
654	IGCM_debug_Exit "IGCM_sys_UnTar"
655	fi
656	IGCM_debug_PopStack "IGCM_sys_UnTar"
657	}
658
659	#D-#==================================================
660	#D-function IGCM_sys_Qsub
661	#D-* Purpose: Qsub new job
662	#D-* Examples:
663	#D-
664	function IGCM_sys_Qsub {
665	IGCM_debug_PushStack "IGCM_sys_Qsub" $@
666	if ( $DEBUG_sys ) ; then
667	echo "IGCM_sys_Qsub :" $@
668	fi
669	typeset options
670	if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
671	options=" -o ${Script_Output} -e ${Script_Output}"
672	else
673	options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
674	fi
675
676	/usr/local/bin/ccc_msub ${options} < $1
677	if [ $? -gt 0 ] ; then
678	echo "IGCM_sys_Qsub : erreur ${options} $1"
679	IGCM_debug_Exit "IGCM_sys_Qsub"
680	fi
681	IGCM_debug_PopStack "IGCM_sys_Qsub"
682	}
683
684	#D-#==================================================
685	#D-function IGCM_sys_QsubPost
686	#D-* Purpose: Qsub new job on scalaire
687	#D-* Examples:
688	#D-
689	function IGCM_sys_QsubPost {
690	IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
691	if ( $DEBUG_sys ) ; then
692	echo "IGCM_sys_QsubPost :" $@
693	fi
694
695	# Need to export listVarEnv for cesium
696	# NO Need to export listVarEnv for titane
697	# ============ FRONTEND START ============ #
698
699	/usr/local/bin/ccc_msub -p ${BRIDGE_MSUB_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
700
701	# ============ FRONTEND END ============ #
702
703	# ============ CESIUM START ============ #
704	# typeset NB_ESSAI DELAI status i
705	# # number of tentative
706	# NB_ESSAI=10
707	# # time delay between tentative
708	# DELAI=10
709	# (( i = 0 ))
710	# while [ $i -lt $NB_ESSAI ] ; do
711	# /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job
712	# status=$?
713	# if [ ${status} -gt 0 ]; then
714	# sleep $DELAI
715	# else
716	# break
717	# fi
718	# (( i = i + 1 ))
719	# done
720	# ============ CESIUM END ============ #
721
722	if [ $? -gt 0 ] ; then
723	echo "IGCM_sys_QsubPost : erreur " $@
724	IGCM_debug_Exit "IGCM_sys_QsubPost"
725	fi
726	IGCM_debug_PopStack "IGCM_sys_QsubPost"
727	}
728
729	#D-*************************
730	#D- File transfer functions
731	#D-*************************
732	#D-
733
734	#D-#==================================================
735	#D-function IGCM_sys_Rsync_out
736	#D-* Purpose: treat return val of rsync
737	#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
738	#D- Error values and explanations can depend on your system version.
739	function IGCM_sys_Rsync_out {
740	RET=$1
741	if [ ! $RET ] ; then
742	echo "rsync error !"
743	fi
744
745	if [ $MYLANG = "fr" ]; then
746	case $RET in
747	0) return ;;
748	1) echo "Erreur de rsync ; RERR_SYNTAX : "
749	echo "Erreur de syntaxe ou d'utilisation."
750	return;;
751	2) echo "Erreur de rsync ; RERR_PROTOCOL : "
752	echo "Incompatibilité de protocole."
753	return;;
754	3) echo "Erreur de rsync ; RERR_FILESELECT 3"
755	echo "Erreurs lors de la sélection des fichiers d'entrée sortie et"
756	echo "répertoires"
757	return;;
758	4) echo "Erreur de rsync ; RERR_UNSUPPORTED"
759	echo "Action demandée non supportée : une tentative de manipulation de"
760	echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a"
761	echo "été faite ; ou une option qui est supportée par le client mais"
762	echo "pas par le serveur a été spécifiée."
763	return;;
764	10) echo "Erreur de rsync ; RERR_SOCKETIO"
765	echo "Erreur dans le socket d'entrée sortie"
766	return;;
767	11) echo "Erreur de rsync ; RERR_FILEIO"
768	echo "Erreur d'entrée sortie fichier"
769	return;;
770	12) echo "Erreur de rsync ; RERR_STREAMIO"
771	echo "Erreur dans flux de donnée du protocole rsync"
772	return;;
773	13) echo "Erreur de rsync ; RERR_MESSAGEIO"
774	echo "Erreur avec les diagnostics du programme"
775	return;;
776	14) echo "Erreur de rsync ; RERR_IPC"
777	echo "Erreur dans le code IPC"
778	return;;
779	20) echo "Erreur de rsync ; RERR_SIGNAL"
780	echo "SIGUSR1 ou SIGINT reçu"
781	return;;
782	21) echo "Erreur de rsync ; RERR_WAITCHILD"
783	echo "Une erreur retournée par waitpid()"
784	return;;
785	22) echo "Erreur de rsync ; RERR_MALLOC"
786	echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
787	return;;
788	23) echo ""
789	echo "Erreur fichier inexistant"
790	return;;
791	30) echo "Erreur de rsync ; RERR_TIMEOUT"
792	echo "Temps d'attente écoulé dans l'envoi/réception de données"
793	return;;
794	*) echo "Erreur de rsync : code de retour de rsync inconnu :" $RET
795	return;;
796	esac
797	elif [ $MYLANG = "en" ] ; then
798	case $RET in
799	0) return;;
800	1) echo "rsync error : Syntax or usage error "
801	return;;
802	2) echo "rsync error : Protocol incompatibility "
803	return;;
804	3) echo "rsync error : Errors selecting input/output files, dirs"
805	return;;
806	4) echo "rsync error : Requested action not supported: an attempt"
807	echo "was made to manipulate 64-bit files on a platform that cannot support"
808	echo "them; or an option was specified that is supported by the client and"
809	echo "not by the server."
810	return;;
811	5) echo "rsync error : Error starting client-server protocol"
812	return;;
813	10) echo "rsync error : Error in socket I/O "
814	return;;
815	11) echo "rsync error : Error in file I/O "
816	return;;
817	12) echo "rsync error : Error in rsync protocol data stream "
818	return;;
819	13) echo "rsync error : Errors with program diagnostics "
820	return;;
821	14) echo "rsync error : Error in IPC code "
822	return;;
823	20) echo "rsync error : Received SIGUSR1 or SIGINT "
824	return;;
825	21) echo "rsync error : Some error returned by waitpid() "
826	return;;
827	22) echo "rsync error : Error allocating core memory buffers "
828	return;;
829	23) echo "rsync error : Partial transfer due to error"
830	return;;
831	24) echo "rsync error : Partial transfer due to vanished source files"
832	return;;
833	30) echo "rsync error : Timeout in data send/receive "
834	return;;
835	*) echo "rsync error : return code of rsync unknown :" $RET
836	return;;
837	esac
838	else
839	echo "unknown language $MYLANG."
840	return
841	fi
842	}
843
844	#D-#==================================================
845	#D-function IGCM_sys_Miror_libIGCM
846	#D-* Purpose: Mirror libIGCM PATH and lib to cesium
847	#D-* Examples:
848	#D-
849	function IGCM_sys_Mirror_libIGCM {
850	IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
851	if ( $DEBUG_sys ) ; then
852	echo "IGCM_sys_Mirror_libIGCM"
853	fi
854
855	typeset RET DEST
856
857	mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
858
859	echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
860	${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
861	RET=$?
862
863	if [ ${RET} -gt 0 ] ; then
864	echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium."
865	cat out_rsync
866	fi
867	IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
868	}
869
870	#D-#==================================================
871	#D-function IGCM_sys_Cp
872	#D-* Purpose: generic cp
873	#D-* Examples:
874	#D-
875	function IGCM_sys_Cp {
876	IGCM_debug_PushStack "IGCM_sys_Cp" $@
877	if ( $DEBUG_sys ) ; then
878	echo "IGCM_sys_Cp :" $@
879	fi
880
881	typeset RET
882
883	echo cp $@ > out_rsync 2>&1
884	\cp $@ >> out_rsync 2>&1
885	RET=$?
886
887	if [ ${RET} -gt 0 ] ; then
888	echo "IGCM_sys_Cp : error."
889	cat out_rsync
890	IGCM_debug_Exit "IGCM_sys_Cp"
891	else
892	\rm out_rsync
893	fi
894	IGCM_debug_PopStack "IGCM_sys_Cp"
895	}
896
897	#D-#==================================================
898	#D-function IGCM_sys_Rm
899	#D-* Purpose: generic rm
900	#D-* Examples:
901	#D-
902	function IGCM_sys_Rm {
903	IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
904	if ( $DEBUG_sys ) ; then
905	echo "IGCM_sys_Rm :" $@
906	fi
907
908	typeset RET
909
910	echo rm $@ > out_rsync 2>&1
911	\rm $@ >> out_rsync 2>&1
912	RET=$?
913
914	if [ ${RET} -gt 0 ] ; then
915	echo "IGCM_sys_Rm : error."
916	cat out_rsync
917	IGCM_debug_Exit "IGCM_sys_Rm"
918	else
919	\rm out_rsync
920	fi
921	IGCM_debug_PopStack "IGCM_sys_Rm"
922	}
923
924	#D-#==================================================
925	#D-function IGCM_sys_RmRunDir
926	#D-* Purpose: rm tmpdir (dummy function most of the time batch
927	#D- scheduler will do the job)
928	#D-* Examples:
929	#D-
930	function IGCM_sys_RmRunDir {
931	IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
932	if ( $DEBUG_sys ) ; then
933	echo "IGCM_sys_RmRunDir :" $@
934	fi
935
936	typeset RET
937
938	echo rm $@ > out_rsync 2>&1
939	\rm $@ >> out_rsync 2>&1
940	RET=$?
941
942	if [ ${RET} -gt 0 ] ; then
943	echo "IGCM_sys_RmRunDir : error."
944	cat out_rsync
945	IGCM_debug_Exit "IGCM_sys_RmRunDir"
946	else
947	\rm out_rsync
948	fi
949	IGCM_debug_PopStack "IGCM_sys_RmRunDir"
950	}
951
952	#D-#==================================================
953	#D-function IGCM_sys_Mv
954	#D-* Purpose: generic move
955	#D-* Examples:
956	#D-
957	function IGCM_sys_Mv {
958	IGCM_debug_PushStack "IGCM_sys_Mv" $@
959	if ( $DEBUG_sys ) ; then
960	echo "IGCM_sys_Mv :" $@
961	fi
962
963	if [ $DRYRUN = 0 ]; then
964
965	typeset RET
966
967	echo mv $@ > out_rsync 2>&1
968	\mv $@ >> out_rsync 2>&1
969	RET=$?
970
971	if [ ${RET} -gt 0 ] ; then
972	echo "IGCM_sys_Mv : error in mv."
973	cat out_rsync
974	IGCM_debug_Exit "IGCM_sys_Mv"
975	else
976	\rm out_rsync
977	fi
978	else
979	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
980	fi
981
982	IGCM_debug_PopStack "IGCM_sys_Mv"
983	}
984
985	#D-#==================================================
986	#D-function IGCM_sys_Put_Dir
987	#D-* Purpose: Copy a complete directory on $(ARCHIVE)
988	#D-* Examples:
989	#D-
990	function IGCM_sys_Put_Dir {
991	IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
992	if ( $DEBUG_sys ) ; then
993	echo "IGCM_sys_Put_Dir :" $@
994	fi
995	if [ $DRYRUN = 0 ]; then
996	if [ ! -d ${1} ] ; then
997	echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
998	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
999	return
1000	fi
1001
1002	typeset RET
1003
1004	# Only if we use rsync
1005	#IGCM_sys_TestDirArchive $( dirname $2 )
1006	#
1007	#USUAL WAY
1008	\cp -r $1 $2 > out_rsync 2>&1
1009	RET=$?
1010
1011	if [ ${RET} -gt 0 ] ; then
1012	echo "IGCM_sys_Put_Dir : error."
1013	cat out_rsync
1014	IGCM_debug_Exit "IGCM_sys_Put_Dir"
1015	else
1016	\rm out_rsync
1017	fi
1018	else
1019	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1020	fi
1021	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1022	}
1023
1024	#D-#==================================================
1025	#D-function IGCM_sys_Get_Dir
1026	#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1027	#D-* Examples:
1028	#D-
1029	function IGCM_sys_Get_Dir {
1030	IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1031	if ( $DEBUG_sys ) ; then
1032	echo "IGCM_sys_Get_Dir :" $@
1033	fi
1034	if [ $DRYRUN = 0 ]; then
1035	# if [ ! -d ${1} ] ; then
1036	# echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1037	# IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1038	# return
1039	# fi
1040
1041	typeset RET
1042
1043	# Only if we use rsync
1044	#IGCM_sys_TestDirArchive $( dirname $2 )
1045	#
1046	# USUAL WAY
1047	# add dmfind/dmget (to demigrate all offline files) :
1048	#dmfind $1 -state MIG -o -state OFL -o -state PAR \| dmget
1049	ccc_hsm get -r $1
1050	\cp -r $1 $2 > out_rsync 2>&1
1051	RET=$?
1052
1053	if [ ${RET} -gt 0 ] ; then
1054	echo "IGCM_sys_Get_Dir : error."
1055	cat out_rsync
1056	IGCM_debug_Exit "IGCM_sys_Get_Dir"
1057	else
1058	\rm out_rsync
1059	fi
1060	else
1061	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1062	fi
1063	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1064	}
1065
1066	#D-#==================================================
1067	#D-function IGCM_sys_Get_Master
1068	#D-* Purpose: Copy a complete directory from MASTER filesystem
1069	#D-* Examples:
1070	#D-
1071	function IGCM_sys_Get_Master {
1072	IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1073	if ( $DEBUG_sys ) ; then
1074	echo "IGCM_sys_Get_Master :" $@
1075	fi
1076	if [ $DRYRUN = 0 ]; then
1077	if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1078	echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1079	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1080	return
1081	fi
1082
1083	typeset RET
1084
1085	#USUAL WAY
1086	\cp -rL $1 $2 > out_rsync 2>&1
1087	RET=$?
1088
1089	if [ ${RET} -gt 0 ] ; then
1090	echo "IGCM_sys_Get_Master : error."
1091	cat out_rsync
1092	IGCM_debug_Exit "IGCM_sys_Get_Master"
1093	else
1094	\rm out_rsync
1095	fi
1096	else
1097	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1098	fi
1099	IGCM_debug_PopStack "IGCM_sys_Get_Master"
1100	}
1101
1102	#====================================================
1103	#- Call IGCM_sys_Mirror_libIGCM now !
1104	if ( $MirrorlibIGCM ) ; then
1105	IGCM_sys_Mirror_libIGCM
1106	fi
1107
1108	#D-#==================================================
1109	#D-function IGCM_sys_Put_Rest
1110	#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1111	#D- File and target directory must exist.
1112	#D-* Examples:
1113	#D-
1114	function IGCM_sys_Put_Rest {
1115	IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1116	if ( $DEBUG_sys ) ; then
1117	echo "IGCM_sys_Put_Rest :" $@
1118	fi
1119	if [ $DRYRUN = 0 ]; then
1120	if [ ! -f ${1} ] ; then
1121	echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1122	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1123	fi
1124
1125	typeset RET
1126	#
1127	if [ X${JobType} = XRUN ] ; then
1128	IGCM_sys_Chmod 444 ${1}
1129	fi
1130
1131	#
1132	# USUAL WAY
1133	\cp $1 $2 > out_rsync 2>&1
1134	RET=$?
1135
1136	# #RSYNC WITH NETWORK SSH CALL
1137	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1138	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1139
1140	# #RSYNC WITH NFS USE
1141	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1142	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1143
1144	# RET=$?
1145	# IGCM_sys_Rsync_out $RET
1146
1147	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1148	# (( RET=RET+$? ))
1149
1150	if [ ${RET} -gt 0 ] ; then
1151	echo "IGCM_sys_Put_Rest : error."
1152	cat out_rsync
1153	IGCM_debug_Exit "IGCM_sys_Put_Rest"
1154	else
1155	\rm out_rsync
1156	fi
1157	else
1158	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1159	fi
1160	IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1161	}
1162
1163	#D-#==================================================
1164	#D-function IGCM_sys_PutBuffer_Rest
1165	#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1166	#D- File and target directory must exist.
1167	#D-* Examples:
1168	#D-
1169	function IGCM_sys_PutBuffer_Rest {
1170	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1171	if ( $DEBUG_sys ) ; then
1172	echo "IGCM_sys_PutBuffer_Rest :" $@
1173	fi
1174	if [ $DRYRUN = 0 ]; then
1175	if [ ! -f ${1} ] ; then
1176	echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1177	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1178	fi
1179
1180	typeset RET
1181	#
1182	if [ X${JobType} = XRUN ] ; then
1183	IGCM_sys_Chmod 444 ${1}
1184	fi
1185
1186	#
1187	# USUAL WAY
1188	\cp $1 $2 > out_rsync 2>&1
1189	RET=$?
1190
1191	if [ ${RET} -gt 0 ] ; then
1192	echo "IGCM_sys_PutBuffer_Rest : error."
1193	cat out_rsync
1194	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1195	else
1196	\rm out_rsync
1197	fi
1198	else
1199	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1200	fi
1201	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1202	}
1203
1204	#D-#==================================================
1205	#D-function IGCM_sys_Put_Out
1206	#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1207	#D-* Examples:
1208	#D-
1209	function IGCM_sys_Put_Out {
1210	IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1211	if ( $DEBUG_sys ) ; then
1212	echo "IGCM_sys_Put_Out :" $@
1213	fi
1214
1215	typeset NB_ESSAI DELAI RET i
1216
1217	# number of tentative
1218	NB_ESSAI=3
1219	# time delay between tentative
1220	DELAI=2
1221
1222	if [ $DRYRUN = 0 ]; then
1223	if [ ! -f ${1} ] ; then
1224	echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1225	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1226	return 1
1227	fi
1228	#
1229	IGCM_sys_MkdirArchive $( dirname $2 )
1230	#
1231
1232	#=====================================================
1233	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1234	#=====================================================
1235
1236	#echo ${2} \| grep "${R_OUT}" > /dev/null 2>&1
1237	#if [ $? -eq 0 ] ; then
1238	# typeset WORKPATH FILEPATH
1239	# WORKPATH=$( dirname $2 \| sed -e "s\|${R_OUT}\|${R_BUF}\|" )
1240	# IGCM_sys_MkdirWork ${WORKPATH}
1241	# FILEPATH=${WORKPATH}/$( basename $2 )
1242	# #
1243	# IGCM_sys_Cp ${1} ${FILEPATH}
1244	#fi
1245
1246	if [ X${JobType} = XRUN ] ; then
1247	if [ X${3} = X ] ; then
1248	IGCM_sys_Chmod 444 ${1}
1249	fi
1250	fi
1251	#
1252
1253	(( i = 0 ))
1254	while [ $i -lt $NB_ESSAI ] ; do
1255	# USUAL WAY
1256	\cp $1 $2 > out_rsync 2>&1
1257	RET=$?
1258	if [ ${RET} -gt 0 ]; then
1259	IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed ${i}/${NB_ESSAI}"
1260	IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1261	sleep $DELAI
1262	else
1263	break
1264	fi
1265	(( i = i + 1 ))
1266	done
1267
1268	# #RSYNC WITH NETWORK SSH CALL
1269	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1270	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1271
1272	# #RSYNC WITH NFS USE
1273	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1274	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1275
1276	# RET=$?
1277	# IGCM_sys_Rsync_out $RET
1278
1279	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1280	# (( RET=RET+$? ))
1281
1282	if [ ${RET} -gt 0 ] ; then
1283	echo "IGCM_sys_Put_Out : error."
1284	cat out_rsync
1285	IGCM_debug_Exit "IGCM_sys_Put_Out"
1286	else
1287	\rm out_rsync
1288	fi
1289	else
1290	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1291	fi
1292	IGCM_debug_PopStack "IGCM_sys_Put_Out"
1293	return 0
1294	}
1295
1296	#D-#==================================================
1297	#D-function IGCM_sys_PutBuffer_Out
1298	#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1299	#D-* Examples:
1300	#D-
1301	function IGCM_sys_PutBuffer_Out {
1302	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1303	if ( $DEBUG_sys ) ; then
1304	echo "IGCM_sys_PutBuffer_Out :" $@
1305	fi
1306	if [ $DRYRUN = 0 ]; then
1307	if [ ! -f ${1} ] ; then
1308	echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1309	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1310	return 1
1311	fi
1312	#
1313	IGCM_sys_Mkdir $( dirname $2 )
1314	#
1315	typeset RET
1316
1317	if [ X${JobType} = XRUN ] ; then
1318	if [ X${3} = X ] ; then
1319	IGCM_sys_Chmod 444 ${1}
1320	fi
1321	fi
1322	#
1323	# USUAL WAY
1324	\cp $1 $2 > out_rsync 2>&1
1325	RET=$?
1326
1327	if [ ${RET} -gt 0 ] ; then
1328	echo "IGCM_sys_PutBuffer_Out : error."
1329	cat out_rsync
1330	IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1331	else
1332	\rm out_rsync
1333	fi
1334	else
1335	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1336	fi
1337	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1338	return 0
1339	}
1340
1341	#D-#==================================================
1342	#D-function IGCM_sys_Get
1343	#D-* Purpose: Get a file from ${ARCHIVE}
1344	#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1345	#D- IGCM_sys_Get /l Array_contain_myfiles /destpath/
1346	function IGCM_sys_Get {
1347	IGCM_debug_PushStack "IGCM_sys_Get" $@
1348
1349	typeset DEST RET dm_liste ifile target file_work
1350	typeset NB_ESSAI DELAI status i
1351
1352	if ( $DEBUG_sys ) ; then
1353	echo "IGCM_sys_Get :" $@
1354	fi
1355
1356	# number of tentative
1357	NB_ESSAI=3
1358	# time delay between tentative
1359	DELAI=2
1360
1361	if [ $DRYRUN -le 2 ]; then
1362	if [ X${1} = X'/l' ] ; then
1363	# test if the first file is present in the old computation :
1364	eval set +A dm_liste \${${2}}
1365	else
1366	eval set +A dm_liste ${1}
1367	fi
1368	eval DEST=\${${#}}
1369
1370	#=====================================================
1371	# COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1372	#=====================================================
1373
1374	# Is it an R_OUT file (not R_IN) ?
1375	#echo ${dm_liste[0]} \| grep "${R_OUT}" > /dev/null 2>&1
1376	#if [ $? -eq 0 ] ; then
1377	# # Yes ? then we try to get it in SCRATCHDIR
1378	# set +A file_work $( echo ${dm_liste[*]} \| sed -e "s\|${R_OUT}\|${R_BUF}\|g" )
1379	# if [ -f ${file_work[0]} ] ; then
1380	# IGCM_sys_Cp ${file_work[*]} ${DEST}
1381	# IGCM_debug_PopStack "IGCM_sys_Get"
1382	# return
1383	# fi
1384	#fi
1385
1386	ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1387	RET=$?
1388	if [ ${RET} -gt 0 ] ; then
1389	echo "WARNING IGCM_sys_Get : demigration error."
1390	cat out_rsync
1391	echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1392	fi
1393
1394	#if [ ${RET} -gt 0 ] ; then
1395	# if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1396	# cat out_rsync
1397	# echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1398	# sleep 30
1399	# echo "We try another time"
1400	## dmget ${dm_liste[*]} > out_rsync 2>&1
1401	# ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1402	# RET=$?
1403	# if [ ${RET} -gt 0 ] ; then
1404	# echo "ERROR IGCM_sys_Get : again demigration error :"
1405	# cat out_rsync
1406	# IGCM_debug_Exit "IGCM_sys_Get"
1407	# fi
1408	# else
1409	# echo "ERROR IGCM_sys_Get : demigration error :"
1410	# cat out_rsync
1411	# IGCM_debug_Exit "IGCM_sys_Get"
1412	# fi
1413	#fi
1414
1415	#USUAL WAY
1416	if [ X${1} = X'/l' ] ; then
1417	(( RET=0 ))
1418	for target in ${dm_liste[*]} ; do
1419	local_file=$( basename ${target} )
1420	(( i = 0 ))
1421	# test if the target file is present before the loop
1422	IGCM_sys_TestFileArchive ${target}
1423	RET=$?
1424	if [ ${RET} -gt 0 ] ; then
1425	echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1426	IGCM_debug_Exit "IGCM_sys_Get"
1427	else
1428	while [ $i -lt $NB_ESSAI ] ; do
1429	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1430	status=$?
1431	if [ ${status} -gt 0 ]; then
1432	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed ${i}/${NB_ESSAI}"
1433	IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1434	sleep $DELAI
1435	else
1436	break
1437	fi
1438	(( i = i + 1 ))
1439	done
1440	(( RET = RET + status ))
1441	fi
1442	done
1443	else
1444	\cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1445	RET=$?
1446	fi
1447
1448	# #RSYNC WITH NETWORK SSH CALL
1449	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1450	# ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1451
1452	# #RSYNC WITH NFS USE
1453	# echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1454	# ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1455
1456	# RET=$?
1457	# IGCM_sys_Rsync_out $RET
1458
1459	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1460	# (( RET=RET+$? ))
1461
1462	if [ ${RET} -gt 0 ] ; then
1463	echo "IGCM_sys_Get : copy error."
1464	cat out_rsync
1465	IGCM_debug_Exit "IGCM_sys_Get"
1466	else
1467	\rm out_rsync
1468	fi
1469	else
1470	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1471	fi
1472	IGCM_debug_PopStack "IGCM_sys_Get"
1473	}
1474
1475	#D-#==================================================
1476	#D-function IGCM_sys_GetBuffer
1477	#D-* Purpose: Get a file from ${SCRATCHDIR}
1478	#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1479	#D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1480	function IGCM_sys_GetBuffer {
1481	IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1482
1483	typeset DEST RET buf_liste ifile target file_work
1484
1485	if ( $DEBUG_sys ) ; then
1486	echo "IGCM_sys_GetBuffer :" $@
1487	fi
1488	if [ $DRYRUN -le 2 ]; then
1489	if [ X${1} = X'/l' ] ; then
1490	# test if the first file is present in the old computation :
1491	eval set +A buf_liste \${${2}}
1492	else
1493	eval set +A buf_liste ${1}
1494	fi
1495	eval DEST=\${${#}}
1496
1497	#USUAL WAY
1498	if [ X${1} = X'/l' ] ; then
1499	(( RET=0 ))
1500	for target in ${buf_liste[*]} ; do
1501	local_file=$( basename ${target} )
1502	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1503	(( RET = RET + $? ))
1504	done
1505	else
1506	\cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1507	RET=$?
1508	fi
1509
1510	if [ ${RET} -gt 0 ] ; then
1511	echo "IGCM_sys_GetBuffer : copy error."
1512	cat out_rsync
1513	IGCM_debug_Exit "IGCM_sys_GetBuffer"
1514	else
1515	\rm out_rsync
1516	fi
1517	else
1518	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1519	fi
1520	IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1521	}
1522
1523	#D-#==================================================
1524	#D-function IGCM_sys_GetDate_FichWork
1525	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1526	#D-* Examples:
1527	#D-
1528	function IGCM_sys_GetDate_FichWork {
1529	IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1530	if ( $DEBUG_sys ) ; then
1531	echo "IGCM_sys_GetDate_FichWork :" $@
1532	fi
1533	typeset dateF
1534	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1535	eval ${2}=${dateF[5]}
1536
1537	# donne la date filesys d'un fichier sur la machine work
1538	IGCM_debug_PopStack "IGCM_sys_FichWork"
1539	}
1540
1541	#D-#==================================================
1542	#D-function IGCM_sys_GetDate_FichArchive
1543	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1544	#D-* Examples:
1545	#D-
1546	function IGCM_sys_GetDate_FichArchive {
1547	IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1548	if ( $DEBUG_sys ) ; then
1549	echo "IGCM_sys_GetDate_FichArchive :" $@
1550	fi
1551	typeset dateF
1552	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1553	eval ${2}=${dateF[5]}
1554
1555	IGCM_debug_PopStack "IGCM_sys_FichArchive"
1556	}
1557
1558	#D-#==================================================
1559	#D-function IGCM_sys_Dods_Rm
1560	#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1561	#D-* Examples:
1562	#D-
1563	function IGCM_sys_Dods_Rm {
1564	if ( $DEBUG_sys ) ; then
1565	echo "IGCM_sys_Dods_Rm :" $@
1566	fi
1567	typeset RET
1568	RET=0
1569	if [ $DRYRUN = 0 ]; then
1570
1571	# if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1572	# echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1573	# echo "Nothing has been done."
1574	# return
1575	# fi
1576
1577	/ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1578	RET=$?
1579
1580	# if [ ${RET} -gt 0 ] ; then
1581	# echo "IGCM_sys_Dods_Rm : error."
1582	# cat out_dods_rm
1583	# IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1584	# else
1585	# rm out_dods_rm
1586	# fi
1587
1588	else
1589	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1590	fi
1591	return $RET
1592	}
1593
1594	#D-#==================================================
1595	#D-function IGCM_sys_Dods_Cp
1596	#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1597	#D-* Examples:
1598	#D-
1599	function IGCM_sys_Dods_Cp {
1600	if ( $DEBUG_sys ) ; then
1601	echo "IGCM_sys_Dods_Cp :" $@
1602	fi
1603	typeset RET
1604	RET=0
1605	if [ $DRYRUN = 0 ]; then
1606
1607	# if [ ! -d ${R_SAVE}/${1} ] ; then
1608	# echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1609	# echo "Nothing has been done."
1610	# return
1611	# fi
1612
1613	/ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1614	RET=$?
1615
1616	# if [ ${RET} -gt 0 ] ; then
1617	# echo "IGCM_sys_Dods_Cp : error."
1618	# cat out_dods_cp
1619	# IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1620	# else
1621	# rm out_dods_cp
1622	# fi
1623
1624	else
1625	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1626	fi
1627	return $RET
1628	}
1629
1630	#D-#==================================================
1631	#D-function IGCM_sys_Put_Dods
1632	#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1633	#D-* Examples:
1634	#D-
1635	function IGCM_sys_Put_Dods {
1636	IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1637	if ( $DEBUG_sys ) ; then
1638	echo "IGCM_sys_Put_Dods :" $@
1639	fi
1640	set -vx
1641	typeset RET
1642	if [ $DRYRUN = 0 ]; then
1643	if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1644	echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1645	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1646	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1647	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1648	return
1649	fi
1650
1651	if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1652	echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1653	echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1654	echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1655	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1656	return
1657	fi
1658	#
1659	if [ -d ${R_SAVE}/${1} ] ; then
1660	cd ${R_SAVE}
1661	elif [ -d ${R_FIGR}/${1} ] ; then
1662	cd ${R_FIGR}
1663	fi
1664
1665	IGCM_sys_Dods_Rm ${1}
1666	IGCM_sys_Dods_Cp ${1}
1667	RET=0
1668
1669	if [ ${RET} -gt 0 ] ; then
1670	echo "IGCM_sys_Put_Dods : error."
1671	IGCM_debug_Exit "IGCM_sys_Put_Dods"
1672	fi
1673	else
1674	( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1675	fi
1676	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1677	}
1678
1679	##############################################################
1680	# REBUILD OPERATOR
1681
1682	function IGCM_sys_rebuild {
1683	IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1684	if ( $DEBUG_sys ) ; then
1685	echo "IGCM_sys_rebuild :" $@
1686	fi
1687	/home/cont003/p86ipsl/X64/bin/rebuild -f -o $@
1688	if [ $? -gt 0 ] ; then
1689	echo "IGCM_sys_rebuild : erreur ${@}."
1690	IGCM_debug_Exit "rebuild"
1691	fi
1692
1693	IGCM_debug_PopStack "IGCM_sys_rebuild"
1694	}
1695
1696	function IGCM_sys_rebuild_station {
1697	IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1698	typeset i list_opt file_in file_out prefix_invert list_invert
1699	if ( $DEBUG_sys ) ; then
1700	echo "IGCM_sys_rebuild_station :" $@
1701	fi
1702	list_opt=$@
1703
1704	# Invert Axis : t,x -> x,t
1705	# t,pres,x -> x,t,pres
1706	# So that we can concatenate along x
1707	i=0
1708	for file_in in ${list_opt} ; do
1709	(( i = i + 1))
1710	[ ${i} = 1 ] && file_out=${file_in} && continue
1711	prefix_invert=$( basename ${file_in} .nc )
1712	IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1713	list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1714	done
1715
1716	# Concatenate
1717	IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1718
1719	# Re-ivert file
1720	IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1721
1722	# Station re-ordering is too expansive to be run within libICGM
1723	# This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1724	# This re-ordering must be done "in memory" by the cmorization process
1725	# Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1726	# BEGIN reordering
1727
1728	# Only LMDZ text output contains the exact ordering of the station.
1729	# We isolate this in the code below:
1730	# 0 38 -157.5000000000000 70.98591549295774
1731	# 0 54 27.49999999999999 67.18309859154928
1732	# 0 56 -62.50000000000001 82.39436619718309
1733	# 0 79 12.49999999999999 78.59154929577466
1734	# 0 116 -165.0000000000000 76.05633802816901
1735	# 0 117 130.0000000000000 70.98591549295774
1736	# 0 118 110.0000000000000 87.46478873239437
1737	# 1 40 4.999999999999995 51.97183098591550
1738	# typeset iStation iProc list_opt file_in file_out prefix_invert
1739	# typeset -Z4 j4
1740	# typeset -Z3 j3
1741
1742	# unset list_opt
1743	# set +A list_opt $@
1744
1745	# Filename after rebuild
1746	# file_out=${list_opt[0]}
1747	# Prefix of output files
1748	# prefix_invert=$( basename ${file_out} .nc )
1749	# Number of procs
1750	# num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} \| wc -l )
1751
1752	# iProc=0
1753	# while [ ${iProc} -lt ${num_proc} ] ; do
1754	# Array containing Station as a number
1755	# unset proc_stn
1756	# set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} \| sed -e "s/iophy_mpi rank ip lon lat //g" \| awk ' {print $2}' )
1757	# Number of stations produced by processor proc
1758	# stationLast=${#proc_stn[*]}
1759	# Proc number on 4 digits
1760	# j4=${iProc}
1761	# Init
1762	# iStation=0
1763	# while [ ${iStation} -lt ${stationLast} ] ; do
1764	# Station number on 3 digits
1765	# j3=${proc_stn[${iStation}]}
1766	# Extract station
1767	# Invert Axis : t,x -> x,t
1768	# t,pres,x -> x,t,pres
1769	# So that we can concatenate along x
1770	# IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1771	# (( iStation = iStation + 1 ))
1772	# done
1773	# (( iProc = iProc + 1 ))
1774	# done
1775
1776	# Concatenate all station along x
1777	# IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1778
1779	# Re-invert file
1780	# IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1781
1782	# END reordering
1783
1784	IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1785	}
1786
1787	############################################################
1788	# Activate Running Environnment Variables
1789
1790	function IGCM_sys_activ_variables {
1791	IGCM_debug_PushStack "IGCM_sys_activ_variables"
1792	if ( $DEBUG_sys ) ; then
1793	echo "IGCM_sys_activ_variables"
1794	fi
1795
1796	ulimit -s unlimited
1797
1798	export KMP_STACKSIZE=3g
1799	export KMP_LIBRARY=turnaround
1800	export MKL_SERIAL=YES
1801	unset MPI_PLACING_MODE
1802
1803	# add module load nb of threads for core placement
1804	(( max_omp = 0 ))
1805
1806	for comp in ${config_ListOfComponents[*]} ; do
1807	eval ExeNameIn=\${config_Executable_${comp}[0]}
1808	eval ExeNameOut=\${config_Executable_${comp}[1]}
1809
1810	# Only if we really have an executable for the component :
1811	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
1812	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
1813	if [ ${comp_proc_omp_loc} -gt ${max_omp} ] ; then
1814	(( max_omp = comp_proc_omp_loc ))
1815	fi
1816	fi
1817	done
1818
1819	( [ X${max_omp} = X4 ] \|\| [ X${max_omp} = X8 ] ) && { module load openmp/${max_omp}thds ; IGCM_debug_Print 1 "module load openmp/${max_omp}thds" ; }
1820
1821	IGCM_debug_PopStack "IGCM_sys_activ_variables"
1822	}
1823
1824	############################################################
1825	# Desactivate Running Environnment Variables
1826
1827	function IGCM_sys_desactiv_variables {
1828	IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
1829	if ( $DEBUG_sys ) ; then
1830	echo "IGCM_sys_desactiv_variables"
1831	fi
1832	IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
1833	}
1834
1835	############################################################
1836	# Build MPI/OMP scripts run file (dummy function)
1837
1838	function IGCM_sys_build_run_file {
1839
1840	IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
1841
1842	}
1843
1844	############################################################
1845	# Build MPI/OMP scripts
1846	function IGCM_sys_build_execution_scripts
1847	{
1848	IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
1849	if ( $DEBUG_sys ) ; then
1850	echo "IGCM_sys_build_execution_scripts " $@
1851	fi
1852	typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut
1853	typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc
1854	typeset num_corempi nombre_restant_node nombre_restant_comp
1855	typeset IGCM_OMP
1856
1857	if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then
1858	IGCM_debug_Exit "IGCM_sys_titane build_execution_scripts : Job_${config_UserChoices_JobName} doesn't exist in SUBMIT_DIR : ${SUBMIT_DIR} "
1859	fi
1860
1861	if ( ${OK_PARA_MPMD} ) ; then
1862
1863	if [ -f run_file ] ; then
1864	IGCM_sys_Rm -f run_file
1865	fi
1866	touch run_file
1867
1868	if ( ${OK_PARA_OMP} ) ; then
1869
1870	# Hosts treatment
1871
1872	${HOST_MPIRUN_COMMAND} hostname \| sort \| uniq > hosts.tmp
1873
1874	i=0
1875	rm -f hosts
1876	IGCM_debug_Print 1 "sys Titane, Hosts avaible :"
1877	for nodes in `cat hosts.tmp` ; do
1878	host[$i]=$nodes
1879	echo "${host[$i]} slots=8 max_slots=8" >> hosts
1880	IGCM_debug_Print 1 ${host[$i]}
1881	i=$((i+1))
1882	done
1883	rm -f hosts.tmp
1884
1885	listnodes=${host[*]}
1886
1887	EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts"
1888
1889	# Initialisation
1890
1891	init_node=y
1892	node_num_current=0
1893	start_num=0
1894	init_exec=n
1895
1896	# Test : if oasis is there, we put it at the first position
1897
1898	for comp in ${config_ListOfComponents[*]} ; do
1899
1900	if [ "X${comp}" = "XCPL" ] ; then
1901
1902	eval ExeNameIn=\${config_Executable_${comp}[0]}
1903	eval ExeNameOut=\${config_Executable_${comp}[1]}
1904
1905	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
1906	echo "" >> script_${ExeNameOut}.ksh
1907	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
1908	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
1909	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
1910	echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
1911	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
1912
1913	init_node=n
1914
1915	(( nombre_restant_node = NUM_COREPERNODE - 1 ))
1916	node_num_current=0
1917	node_current=${host[${node_num_current}]}
1918
1919	EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh"
1920
1921	init_exec=y
1922	start_num=1
1923
1924	fi
1925
1926	done
1927
1928	# Then loop on the components (except for oasis)
1929
1930	for comp in ${config_ListOfComponents[*]} ; do
1931
1932	eval ExeNameIn=\${config_Executable_${comp}[0]}
1933	eval ExeNameOut=\${config_Executable_${comp}[1]}
1934
1935	# Only if we really have an executable for the component :
1936	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
1937
1938	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
1939	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
1940
1941	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
1942	# echo "set -vx" >> script_${ExeNameOut}.ksh
1943	echo "" >> script_${ExeNameOut}.ksh
1944	echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
1945	echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
1946	echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
1947	echo "export OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
1948	echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh
1949	echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh
1950	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
1951
1952	node_num=0
1953
1954	# We define the number of MPI process to be assigned for the component
1955
1956	nombre_restant_comp=${comp_proc_mpi_loc}
1957
1958	# Loop on the allocated nodes
1959
1960	for node in ${listnodes} ; do
1961
1962	# We go to the current node
1963	if [ ${node_num} = ${node_num_current} ] ; then
1964
1965	node_current=${host[${node_num_current}]}
1966
1967	# If first time on the node : initialisation
1968
1969	if [ ${init_node} = y ] ; then
1970	nombre_restant_node=${NUM_COREPERNODE}
1971	fi
1972
1973	# Test on the number of OMP threads
1974
1975	if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then
1976	(( node_num = node_num + 1 ))
1977	node_num_current=${node_num}
1978	init_node=y
1979	continue
1980	fi
1981
1982	# Number of MPI process to assign
1983
1984	(( num_corempi = nombre_restant_node / comp_proc_omp_loc ))
1985
1986	if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then
1987	num_corempi=${nombre_restant_comp}
1988	fi
1989
1990	(( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc ))
1991	(( nombre_restant_comp = nombre_restant_comp - num_corempi ))
1992
1993	if [ ${init_exec} = y ] ; then
1994	EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
1995	else
1996	EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
1997	init_exec=y
1998	fi
1999
2000	(( start_num = num_corempi + start_num ))
2001
2002	else
2003
2004	(( node_num = node_num + 1 ))
2005	continue
2006	fi
2007
2008	# Test on the number of core/process remaining on the node/component
2009
2010	if [ ${nombre_restant_node} = 0 ] ; then
2011	(( node_num = node_num + 1 ))
2012	node_num_current=${node_num}
2013	init_node=y
2014
2015	if [ ${nombre_restant_comp} = 0 ] ; then
2016	break 1
2017	fi
2018	else
2019
2020	node_num_current=${node_num}
2021	init_node=n
2022
2023	if [ ${nombre_restant_comp} = 0 ] ; then
2024	break 1
2025	fi
2026	fi
2027	done
2028	fi
2029	done
2030
2031	else
2032
2033	# Then first loop on the components for the coupler ie oasis
2034
2035	## the coupler ie oasis must be the first one
2036	for comp in ${config_ListOfComponents[*]} ; do
2037
2038	eval ExeNameOut=\${config_Executable_${comp}[1]}
2039
2040	# for CPL component only
2041	if [ "X${comp}" = "XCPL" ] ; then
2042	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2043	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file
2044	fi
2045	done
2046
2047	# Then second loop on the components
2048
2049	for comp in ${config_ListOfComponents[*]} ; do
2050
2051	eval ExeNameOut=\${config_Executable_${comp}[1]}
2052
2053	# Only if we really have an executable for the component and not the coupler ie oasis:
2054	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2055	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2056	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2057	fi
2058	done
2059	IGCM_sys_Chmod u+x run_file
2060
2061	EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file"
2062
2063	fi
2064
2065	else # Only one executable.
2066	# Check has to be added with :
2067	# Job :
2068	# #MSUB -n 8 # reservation des processeurs pour le job
2069	# #MSUB -N 4 # reservation des nodes pour le job
2070	# BATCH_NUM_PROC_TOT=32
2071	#
2072	# config.card :
2073	# ATM= (gcm.e, lmdz.x, 8MPI, 4OMP)
2074	#
2075	# tested with :
2076	# Job :
2077	# #MSUB -n 32
2078	# BATCH_NUM_PROC_TOT=32
2079	#
2080	# config.card :
2081	# ATM= (gcm.e, lmdz.x)
2082
2083
2084	for comp in ${config_ListOfComponents[*]} ; do
2085
2086	# Only if we really have an executable for the component :
2087	eval ExeNameOut=\${config_Executable_${comp}[1]}
2088	### if ( [ "X${ExeNameOut}" != X\"\" ] ) ; then
2089	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2090
2091	IGCM_OMP=1
2092
2093	if ( ${OK_PARA_OMP} ) ; then
2094	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2095	export OMP_NUM_THREADS=${comp_proc_omp_loc}
2096	IGCMG_OMP=${comp_proc_omp_loc}
2097	fi
2098	if ( ${OK_PARA_MPI} ) ; then
2099	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2100	# Default : mpirun used if nb_proc gt 1
2101	# pour sortie out/err par process ? more test required
2102	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh
2103	EXECUTION="${HOST_MPIRUN_COMMAND} -np ${comp_proc_mpi_loc} ./${ExeNameOut}"
2104	else
2105	# Check if BATCH_NUM_PROC_TOT = IGCMG_OMP
2106	if ( [ ${IGCM_OMP} -ne ${BATCH_NUM_PROC_TOT} ] ) ; then
2107	IGCM_debug_Print 1 "sys Titane : BATCH_NUM_PROC_TOT <> ${comp}_PROC_OMP : ${BATCH_NUM_PROC_TOT} <> ${BRIDGE_MSUB_NPROC} "
2108	IGCM_debug_Print 1 "sys Titane : Check #MSUB -n xx into Job"
2109	IGCM_debug_Exit "IGCM_sys_build_execution_scripts"
2110	fi
2111	# Default : mpirun is NOT used if nb_proc eq 1
2112	# pour sortie out/err par process ? more test required
2113	# echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2114	EXECUTION="/usr/bin/time ./${ExeNameOut}"
2115	fi
2116	fi
2117	done
2118
2119	fi
2120
2121	IGCM_debug_Print 1 "sys Titane : La commande d execution est "
2122	IGCM_debug_Print 1 "$EXECUTION"
2123
2124	IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2125	}
2126
2127	############################################################
2128	# Check of space available on temporary filesytems
2129	function IGCM_sys_check_quota {
2130	IGCM_debug_PushStack "IGCM_sys_check_quota"
2131	if ( $DEBUG_sys ) ; then
2132	echo "IGCM_sys_check_quota "
2133	fi
2134	# Limit of quota (in %)
2135	limit_quota=90
2136
2137	# Check of the volume
2138	volume_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $2}')
2139	volume_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $3}')
2140
2141	if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then
2142
2143	unit_avail=${volume_avail: -1}
2144	unit_quota=${volume_quota: -1}
2145
2146	if [ "${unit_quota}" = "*" ] ; then
2147	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2148	IGCM_debug_Print 1 "More than 100% of your quota is used"
2149	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2150	IGCM_debug_Print 1 "You must have more than 10% available to run"
2151	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2152	IGCM_debug_Verif_Exit
2153	fi
2154
2155	temp_avail=${volume_avail%%${volume_avail: -1}*}
2156	temp_quota=${volume_quota%%${volume_quota: -1}*}
2157
2158	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2159
2160	# Convertion
2161	if [ ${volume_avail: -1} = "T" ] ; then
2162	(( temp_avail = temp_avail * 1000000000000 ))
2163	elif [ ${volume_avail: -1} = "G" ] ; then
2164	(( temp_avail = temp_avail * 1000000000 ))
2165	elif [ ${volume_avail: -1} = "M" ] ; then
2166	(( temp_avail = temp_avail * 1000000 ))
2167	elif [ ${volume_avail: -1} = "k" ] ; then
2168	(( temp_avail = temp_avail * 1000 ))
2169	else
2170	(( temp_avail = volume_avail ))
2171	fi
2172	if [ ${volume_quota: -1} = "T" ] ; then
2173	(( temp_quota = temp_quota * 1000000000000 ))
2174	elif [ ${volume_quota: -1} = "G" ] ; then
2175	(( temp_quota = temp_quota * 1000000000 ))
2176	elif [ ${volume_quota: -1} = "M" ] ; then
2177	(( temp_quota = temp_quota * 1000000 ))
2178	elif [ ${volume_quota: -1} = "k" ] ; then
2179	(( temp_quota = temp_quota * 1000 ))
2180	else
2181	(( temp_quota = volume_quota ))
2182	fi
2183	fi
2184
2185	quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2186	# echo "volume ratio is " $quota_volume
2187
2188	if [ ${quota_volume} -ge ${limit_quota} ] ; then
2189	IGCM_debug_Print 1 "Please, check your quota of volume on scratch"
2190	IGCM_debug_Print 1 "${quota_volume}% of your quota is used"
2191	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2192	IGCM_debug_Print 1 "You must have more than 10% available to run"
2193	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2194	IGCM_debug_Verif_Exit
2195	fi
2196
2197	fi
2198
2199	# Check of the number of inodes
2200
2201	inode_quota=$(ccc_quota \| grep ' scratch' \| awk '{print $6}')
2202	inode_avail=$(ccc_quota \| grep ' scratch' \| awk '{print $7}')
2203
2204	if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then
2205
2206	unit_avail=${inode_avail: -1}
2207	unit_quota=${inode_quota: -1}
2208
2209	if [ "${unit_quota}" = "*" ] ; then
2210	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2211	IGCM_debug_Print 1 "More than 100% of your quota is used"
2212	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2213	IGCM_debug_Print 1 "You must have more than 10% available to run"
2214	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2215	IGCM_debug_Verif_Exit
2216	fi
2217
2218	temp_avail=${inode_avail%%${inode_avail: -1}*}
2219	temp_quota=${inode_quota%%${inode_quota: -1}*}
2220
2221	if [ ! ${unit_avail} = ${unit_quota} ] ; then
2222
2223	# Convertion
2224	if [ ${inode_avail: -1} = "T" ] ; then
2225	(( temp_avail = temp_avail * 1000000000000 ))
2226	elif [ ${inode_avail: -1} = "G" ] ; then
2227	(( temp_avail = temp_avail * 1000000000 ))
2228	elif [ ${inode_avail: -1} = "M" ] ; then
2229	(( temp_avail = temp_avail * 1000000 ))
2230	elif [ ${inode_avail: -1} = "k" ] ; then
2231	(( temp_avail = temp_avail * 1000 ))
2232	else
2233	(( temp_avail = inode_avail ))
2234	fi
2235
2236	if [ ${inode_quota: -1} = "T" ] ; then
2237	(( temp_quota = temp_quota * 1000000000000 ))
2238	elif [ ${inode_quota: -1} = "G" ] ; then
2239	(( temp_quota = temp_quota * 1000000000 ))
2240	elif [ ${inode_quota: -1} = "M" ] ; then
2241	(( temp_quota = temp_quota * 1000000 ))
2242	elif [ ${inode_quota: -1} = "k" ] ; then
2243	(( temp_quota = temp_quota * 1000 ))
2244	else
2245	(( temp_quota = inode_quota ))
2246	fi
2247	fi
2248	quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" \| bc)
2249	# echo "inode ratio is " $quota_inode
2250
2251	if [ ${quota_inode} -ge ${limit_quota} ] ; then
2252	IGCM_debug_Print 1 "Please, check your quota of inode on scratch"
2253	IGCM_debug_Print 1 "${quota_inode}% of your quota is used"
2254	IGCM_debug_Print 1 "Use the ccc_quota command to check"
2255	IGCM_debug_Print 1 "You must have more than 10% available to run"
2256	IGCM_debug_Exit "Not enough space to run ! STOP HERE"
2257	IGCM_debug_Verif_Exit
2258	fi
2259
2260	fi
2261	IGCM_debug_PopStack "IGCM_sys_check_quota"
2262	}
2263
2264	##############################################################
2265	# NCO OPERATOR
2266
2267	function IGCM_sys_ncap2 {
2268	IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2269	if ( $DEBUG_sys ) ; then
2270	echo "IGCM_sys_ncap2 :" $@
2271	fi
2272
2273	typeset NB_ESSAI DELAI status i
2274	# number of tentative
2275	NB_ESSAI=3
2276	# time delay between tentative
2277	DELAI=2
2278
2279	i=0
2280	while [ $i -lt $NB_ESSAI ] ; do
2281	ncap2 "$@" > out_rsync 2>&1
2282	status=$?
2283	if [ ${status} -gt 0 ] ; then
2284	IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2285	cat out_rsync
2286	\rm out_rsync
2287	IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2288	else
2289	\rm out_rsync
2290	break
2291	fi
2292	(( i = i + 1 ))
2293	done
2294
2295	if [ ${status} -gt 0 ] ; then
2296	echo "IGCM_sys_ncap2 : ncap2 error"
2297	IGCM_debug_Exit "ncap2"
2298	fi
2299
2300	IGCM_debug_PopStack "IGCM_sys_ncap2"
2301	}
2302
2303	function IGCM_sys_ncatted {
2304	IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2305	if ( $DEBUG_sys ) ; then
2306	echo "IGCM_sys_ncatted :" $@
2307	fi
2308
2309	typeset NB_ESSAI DELAI status i
2310	# number of tentative
2311	NB_ESSAI=3
2312	# time delay between tentative
2313	DELAI=2
2314
2315	i=0
2316	while [ $i -lt $NB_ESSAI ] ; do
2317	ncatted "$@" > out_rsync 2>&1
2318	status=$?
2319	if [ ${status} -gt 0 ] ; then
2320	IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2321	cat out_rsync
2322	\rm out_rsync
2323	IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2324	else
2325	\rm out_rsync
2326	break
2327	fi
2328	(( i = i + 1 ))
2329	done
2330
2331	if [ ${status} -gt 0 ] ; then
2332	echo "IGCM_sys_ncatted : ncatted error"
2333	IGCM_debug_Exit "ncatted"
2334	fi
2335
2336	IGCM_debug_PopStack "IGCM_sys_ncatted"
2337	}
2338
2339	function IGCM_sys_ncbo {
2340	IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2341	if ( $DEBUG_sys ) ; then
2342	echo "IGCM_sys_ncbo :" $@
2343	fi
2344
2345	typeset NB_ESSAI DELAI status i
2346	# number of tentative
2347	NB_ESSAI=3
2348	# time delay between tentative
2349	DELAI=2
2350
2351	i=0
2352	while [ $i -lt $NB_ESSAI ] ; do
2353	ncbo $@ > out_rsync 2>&1
2354	status=$?
2355	if [ ${status} -gt 0 ] ; then
2356	IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2357	cat out_rsync
2358	\rm out_rsync
2359	IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2360	else
2361	\rm out_rsync
2362	break
2363	fi
2364	(( i = i + 1 ))
2365	done
2366
2367	if [ ${status} -gt 0 ] ; then
2368	echo "IGCM_sys_ncbo : ncbo error"
2369	IGCM_debug_Exit "ncbo"
2370	fi
2371
2372	IGCM_debug_PopStack "IGCM_sys_ncbo"
2373	}
2374
2375	function IGCM_sys_ncdiff {
2376	IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2377	if ( $DEBUG_sys ) ; then
2378	echo "IGCM_sys_ncdiff :" $@
2379	fi
2380
2381	typeset NB_ESSAI DELAI status i
2382	# number of tentative
2383	NB_ESSAI=3
2384	# time delay between tentative
2385	DELAI=2
2386
2387	i=0
2388	while [ $i -lt $NB_ESSAI ] ; do
2389	ncdiff $@ > out_rsync 2>&1
2390	status=$?
2391	if [ ${status} -gt 0 ] ; then
2392	IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2393	cat out_rsync
2394	\rm out_rsync
2395	IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2396	else
2397	\rm out_rsync
2398	break
2399	fi
2400	(( i = i + 1 ))
2401	done
2402
2403	if [ ${status} -gt 0 ] ; then
2404	echo "IGCM_sys_ncdiff : ncdiff error"
2405	IGCM_debug_Exit "ncdiff"
2406	fi
2407
2408	IGCM_debug_PopStack "IGCM_sys_ncdiff"
2409	}
2410
2411	function IGCM_sys_ncea {
2412	IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2413	if ( $DEBUG_sys ) ; then
2414	echo "IGCM_sys_ncea :" $@
2415	fi
2416
2417	typeset NB_ESSAI DELAI status i
2418	# number of tentative
2419	NB_ESSAI=3
2420	# time delay between tentative
2421	DELAI=2
2422
2423	i=0
2424	while [ $i -lt $NB_ESSAI ] ; do
2425	ncea $@ > out_rsync 2>&1
2426	status=$?
2427	if [ ${status} -gt 0 ] ; then
2428	IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2429	cat out_rsync
2430	\rm out_rsync
2431	IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2432	else
2433	\rm out_rsync
2434	break
2435	fi
2436	(( i = i + 1 ))
2437	done
2438
2439	if [ ${status} -gt 0 ] ; then
2440	echo "IGCM_sys_ncea : ncea error"
2441	IGCM_debug_Exit "ncea"
2442	fi
2443
2444	IGCM_debug_PopStack "IGCM_sys_ncea"
2445	}
2446
2447	function IGCM_sys_ncecat {
2448	IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2449	if ( $DEBUG_sys ) ; then
2450	echo "IGCM_sys_ncecat :" $@
2451	fi
2452
2453	typeset NB_ESSAI DELAI status i
2454	# number of tentative
2455	NB_ESSAI=3
2456	# time delay between tentative
2457	DELAI=2
2458
2459	i=0
2460	while [ $i -lt $NB_ESSAI ] ; do
2461	ncecat $@ > out_rsync 2>&1
2462	status=$?
2463	if [ ${status} -gt 0 ] ; then
2464	IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2465	cat out_rsync
2466	\rm out_rsync
2467	IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2468	else
2469	\rm out_rsync
2470	break
2471	fi
2472	(( i = i + 1 ))
2473	done
2474
2475	if [ ${status} -gt 0 ] ; then
2476	echo "IGCM_sys_ncecat : ncecat error"
2477	IGCM_debug_Exit "ncecat"
2478	fi
2479
2480	IGCM_debug_PopStack "IGCM_sys_ncecat"
2481	}
2482
2483	function IGCM_sys_ncflint {
2484	IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2485	if ( $DEBUG_sys ) ; then
2486	echo "IGCM_sys_ncflint :" $@
2487	fi
2488
2489	typeset NB_ESSAI DELAI status i
2490	# number of tentative
2491	NB_ESSAI=3
2492	# time delay between tentative
2493	DELAI=2
2494
2495	i=0
2496	while [ $i -lt $NB_ESSAI ] ; do
2497	ncflint $@ > out_rsync 2>&1
2498	status=$?
2499	if [ ${status} -gt 0 ] ; then
2500	IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2501	cat out_rsync
2502	\rm out_rsync
2503	IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2504	else
2505	\rm out_rsync
2506	break
2507	fi
2508	(( i = i + 1 ))
2509	done
2510
2511	if [ ${status} -gt 0 ] ; then
2512	echo "IGCM_sys_ncflint : ncflint error"
2513	IGCM_debug_Exit "ncflint"
2514	fi
2515
2516	IGCM_debug_PopStack "IGCM_sys_ncflint"
2517	}
2518
2519	function IGCM_sys_ncks {
2520	IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2521	if ( $DEBUG_sys ) ; then
2522	echo "IGCM_sys_ncks :" $@
2523	fi
2524
2525	typeset NB_ESSAI DELAI status i
2526	# number of tentative
2527	NB_ESSAI=3
2528	# time delay between tentative
2529	DELAI=2
2530
2531	i=0
2532	while [ $i -lt $NB_ESSAI ] ; do
2533	ncks $@ > out_rsync 2>&1
2534	status=$?
2535	if [ ${status} -gt 0 ] ; then
2536	IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2537	cat out_rsync
2538	\rm out_rsync
2539	IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2540	else
2541	\rm out_rsync
2542	break
2543	fi
2544	(( i = i + 1 ))
2545	done
2546
2547	if [ ${status} -gt 0 ] ; then
2548	echo "IGCM_sys_ncks : ncks error"
2549	IGCM_debug_Exit "ncks"
2550	fi
2551
2552	IGCM_debug_PopStack "IGCM_sys_ncks"
2553	}
2554
2555	function IGCM_sys_ncpdq {
2556	IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2557	if ( $DEBUG_sys ) ; then
2558	echo "IGCM_sys_ncpdq :" $@
2559	fi
2560
2561	typeset NB_ESSAI DELAI status i
2562	# number of tentative
2563	NB_ESSAI=3
2564	# time delay between tentative
2565	DELAI=2
2566
2567	i=0
2568	while [ $i -lt $NB_ESSAI ] ; do
2569	ncpdq $@ > out_rsync 2>&1
2570	status=$?
2571	if [ ${status} -gt 0 ] ; then
2572	IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2573	cat out_rsync
2574	\rm out_rsync
2575	IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2576	else
2577	\rm out_rsync
2578	break
2579	fi
2580	(( i = i + 1 ))
2581	done
2582
2583	if [ ${status} -gt 0 ] ; then
2584	echo "IGCM_sys_ncpdq : ncpdq error"
2585	IGCM_debug_Exit "ncpdq"
2586	fi
2587
2588	IGCM_debug_PopStack "IGCM_sys_ncpdq"
2589	}
2590
2591	function IGCM_sys_ncra {
2592	IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2593	if ( $DEBUG_sys ) ; then
2594	echo "IGCM_sys_ncra :" $@
2595	fi
2596
2597	typeset NB_ESSAI DELAI status i
2598	# number of tentative
2599	NB_ESSAI=3
2600	# time delay between tentative
2601	DELAI=2
2602
2603	i=0
2604	while [ $i -lt $NB_ESSAI ] ; do
2605	ncra $@ > out_rsync 2>&1
2606	status=$?
2607	if [ ${status} -gt 0 ] ; then
2608	IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2609	cat out_rsync
2610	\rm out_rsync
2611	IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2612	else
2613	\rm out_rsync
2614	break
2615	fi
2616	(( i = i + 1 ))
2617	done
2618
2619	if [ ${status} -gt 0 ] ; then
2620	echo "IGCM_sys_ncra : ncra error"
2621	IGCM_debug_Exit "ncra"
2622	fi
2623
2624	IGCM_debug_PopStack "IGCM_sys_ncra"
2625	}
2626
2627	function IGCM_sys_ncrcat {
2628	IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2629	if ( $DEBUG_sys ) ; then
2630	echo "IGCM_sys_ncrcat :" $@
2631	fi
2632
2633	typeset NB_ESSAI DELAI status i
2634	# number of tentative
2635	NB_ESSAI=3
2636	# time delay between tentative
2637	DELAI=2
2638
2639	i=0
2640	while [ $i -lt $NB_ESSAI ] ; do
2641	ncrcat $@ > out_rsync 2>&1
2642	status=$?
2643	if [ ${status} -gt 0 ] ; then
2644	IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2645	cat out_rsync
2646	\rm out_rsync
2647	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2648	else
2649	\rm out_rsync
2650	break
2651	fi
2652	(( i = i + 1 ))
2653	done
2654
2655	if [ ${status} -gt 0 ] ; then
2656	echo "IGCM_sys_ncrcat : ncrcat error"
2657	#IGCM_debug_Exit "ncrcat"
2658	fi
2659
2660	IGCM_debug_PopStack "IGCM_sys_ncrcat"
2661	}
2662
2663	function IGCM_sys_ncrename {
2664	IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2665	if ( $DEBUG_sys ) ; then
2666	echo "IGCM_sys_ncrename :" $@
2667	fi
2668
2669	typeset NB_ESSAI DELAI status i
2670	# number of tentative
2671	NB_ESSAI=3
2672	# time delay between tentative
2673	DELAI=2
2674
2675	i=0
2676	while [ $i -lt $NB_ESSAI ] ; do
2677	ncrename $@ > out_rsync 2>&1
2678	status=$?
2679	if [ ${status} -gt 0 ] ; then
2680	IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2681	cat out_rsync
2682	\rm out_rsync
2683	IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2684	else
2685	\rm out_rsync
2686	break
2687	fi
2688	(( i = i + 1 ))
2689	done
2690
2691	if [ ${status} -gt 0 ] ; then
2692	echo "IGCM_sys_ncrename : ncrename error"
2693	IGCM_debug_Exit "ncrename"
2694	fi
2695
2696	IGCM_debug_PopStack "IGCM_sys_ncrename"
2697	}
2698
2699	function IGCM_sys_ncwa {
2700	IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2701	if ( $DEBUG_sys ) ; then
2702	echo "IGCM_sys_ncwa :" $@
2703	fi
2704
2705	typeset NB_ESSAI DELAI status i
2706	# number of tentative
2707	NB_ESSAI=3
2708	# time delay between tentative
2709	DELAI=2
2710
2711	i=0
2712	while [ $i -lt $NB_ESSAI ] ; do
2713	ncwa $@ > out_rsync 2>&1
2714	status=$?
2715	if [ ${status} -gt 0 ] ; then
2716	IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2717	cat out_rsync
2718	\rm out_rsync
2719	IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2720	else
2721	\rm out_rsync
2722	break
2723	fi
2724	(( i = i + 1 ))
2725	done
2726
2727	if [ ${status} -gt 0 ] ; then
2728	echo "IGCM_sys_ncwa : ncwa error"
2729	IGCM_debug_Exit "ncwa"
2730	fi
2731
2732	IGCM_debug_PopStack "IGCM_sys_ncwa"
2733	}
2734
2735	##############################################################
2736	# CDO OPERATOR
2737
2738	function IGCM_sys_cdo {
2739	IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2740	if ( $DEBUG_sys ) ; then
2741	echo "IGCM_sys_cdo :" $@
2742	fi
2743
2744	typeset status
2745
2746	\cdo $@ > out_rsync 2>&1
2747	status=$?
2748	if [ ${status} -gt 0 ] ; then
2749	echo "IGCM_sys_cdo : error code ${status}"
2750	cat out_rsync
2751	\rm out_rsync
2752	IGCM_debug_PopStack "IGCM_sys_cdo"
2753	return 1
2754	else
2755	IGCM_debug_PopStack "IGCM_sys_cdo"
2756	return 0
2757	fi
2758
2759	IGCM_debug_PopStack "IGCM_sys_cdo"
2760	}

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