Context Navigation

source: trunk/libIGCM/libIGCM_sys/libIGCM_sys_obelix.ksh @ 832

Last change on this file since 832 was 828, checked in by sdipsl, 11 years ago
Stack file management must be kept in libIGCM_debug
Property svn:keywords set to `Revision Author Date`
File size: 69.7 KB

Rev	Line
[657]	1	#!/bin/ksh
[16]	2
	3	#**************************************************************
	4	# Author: Sebastien Denvil, Martial Mancip, Christian Laguerre
[373]	5	# Contact: Martial.Mancip__at__ipsl.jussieu.fr
	6	# $Revision:: $ Revision of last commit
	7	# $Author:: $ Author of last commit
	8	# $Date:: $ Date of last commit
[16]	9	# IPSL (2006)
	10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
[657]	11	#
[16]	12	#**************************************************************
	13
	14	#=========================================================
	15	# The documentation of this file can be automatically generated
[657]	16	# if you use the prefix #D- for comments to be extracted.
[16]	17	# Extract with command: cat lib* \| grep "^#D-" \| cut -c "4-"
	18	#=========================================================
	19
	20	#D-#==================================================
	21	#D-LibIGCM_sys for obelix
	22	#D-#==================================================
	23	#D-
[657]	24	#D- This ksh library if a layer under some usefull
[16]	25	#D-environment variables and shell commands.
	26	#D-All those definitions depend on host particularities.
	27	#D-It manages a stack mechanism and test validity of operations.
	28	#D-All function described bellow must be prefixed by IGCM_sys.
	29
	30	#====================================================
	31	# libIGCM_sys PARAMETERS
	32	#====================================================
	33
[343]	34	#====================================================
[16]	35	# set DEBUG_sys to true to output calls of function
	36	typeset -r DEBUG_sys=${DEBUG_sys:=true}
	37
[343]	38	#====================================================
[16]	39	# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
	40	typeset -r DRYRUN=${DRYRUN:=0}
	41
	42	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
	43	# -------------------------------------------------------------------------------------
	44	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
[809]	45	# \| \| Cp/Exe/param/files \| \| \| \|
	46	# \| \| Chmod Qsub \| \| \| \|
[16]	47	# -------------------------------------------------------------------------------------
	48	# \| 0 \| yes \| yes \| yes \| yes \|
	49	# -------------------------------------------------------------------------------------
	50	# \| 1 \| yes \| yes \| yes \| no \|
	51	# -------------------------------------------------------------------------------------
	52	# \| 2 \| yes \| yes \| no \| no \|
	53	# -------------------------------------------------------------------------------------
	54	# \| 3 \| yes \| no \| no \| no \|
	55	# -------------------------------------------------------------------------------------
	56
	57	#=====================================================
	58	# Global Variables :
	59	#=====================================================
	60	# Language : "fr" or "en"
	61	typeset -r MYLANG="fr"
	62
	63	#=====================================================
[657]	64	# Host and user names
[217]	65	# $hostname ou hostname
[800]	66	typeset HOST=${HOST:=$( hostname )}
[16]	67	# $username ou whoami
[800]	68	typeset LOGIN=${LOGIN:=$( whoami )}
[657]	69	# $hostname of the MASTER job
[742]	70	typeset MASTER=${MASTER:=$( hostname )}
[16]	71
	72	#D-
	73	#D-#==================================================
	74	#D-Program used in libIGCM
	75	#D-#==================================================
	76
[742]	77	# Submit command
	78	typeset SUBMIT=${SUBMIT:=qsub}
[16]	79	# rsync with path
	80	typeset -r RSYNC=/usr/bin/rsync
	81	# RSYNC_opt args to rsync
[282]	82	typeset -r RSYNC_opt="-va"
[657]	83	# ie storage filesystem
	84	typeset -r STOREHOST=${MASTER}
[16]	85
	86	#====================================================
[305]	87	# Set environment tools (ferret, nco, cdo)
	88	#====================================================
[16]	89	. /home/users/brock/.atlas_env_asterix_ksh
	90
[343]	91	#====================================================
[421]	92	# Set lf95 environment
	93	#====================================================
	94	. /usr/local/install/lf6481/bash_laheyfort_setup
	95
	96	#====================================================
[16]	97	# Host specific DIRECTORIES
	98	#====================================================
	99
	100	#====================================================
[657]	101	#- MirrorlibIGCM for frontend
	102	typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
	103
	104	#====================================================
	105	#- libIGCM_POST for frontend
	106	typeset -r libIGCM_POST=${libIGCM}
	107
	108	#====================================================
[16]	109	#- R_EXE (==> BIN_DIR = ${MODIPSL}/bin )
	110	typeset -r R_EXE="${MODIPSL}/bin"
	111
	112	#====================================================
	113	#- SUBMIT_DIR : submission dir
[256]	114	if [ X${PBS_O_WORKDIR} != X ] ; then
[657]	115	typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}}
[256]	116	else
[657]	117	typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PWD}}
[256]	118	fi
[657]	119
[16]	120	#====================================================
[725]	121	#- IN
	122	typeset -r R_IN=${R_IN:=/home/orchidee01/mmancip/IGCM}
	123
	124	#====================================================
[811]	125	#- ARCHIVE
[800]	126	typeset ARCHIVE=${ARCHIVE:=/home/scratch01/${LOGIN}}
[16]	127
[725]	128	#====================================================
	129	#- STORAGE (dedicated to small/medium files)
[800]	130	typeset STORAGE=${ARCHIVE}
[282]	131
	132	#====================================================
[717]	133	#- R_OUT
[800]	134	typeset R_OUT=${ARCHIVE}/IGCM_OUT
[16]	135
	136	#====================================================
[657]	137	#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
[800]	138	typeset R_FIG=${STORAGE}/IGCM_OUT
[657]	139
	140	#====================================================
	141	#- R_BUF (ONLY FOR double copy an scratch)
[800]	142	typeset -r R_BUF=${STORAGE}/IGCM_OUT
[657]	143
	144	#====================================================
[16]	145	#- RUN_DIR_PATH : Temporary working directory (=> TMP)
[800]	146	typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=/scratch/$PBS_O_LOGNAME.$PBS_JOBID}
[16]	147
	148	#====================================================
	149	#- HOST_MPIRUN_COMMAND
	150	typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"}
	151
[61]	152	#====================================================
	153	#- Max number of arguments passed to nco operator or demigration command
	154	UNIX_MAX_LIMIT=360
	155
[657]	156	#====================================================
	157	#- Number of core per node (max number of OpenMP task)
	158	NUM_COREPERNODE=1
	159
	160	#====================================================
	161	#- Default number of MPI task for IPSL coupled model
	162	#- required for backward compatibility
	163	#-
	164	DEFAULT_NUM_PROC_OCE=1
	165	DEFAULT_NUM_PROC_CPL=1
	166	(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
	167	DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
	168
[16]	169	#D-#==================================================
[725]	170	#D-function IGCM_sys_ChangeArchive
	171	#D-* Purpose: Just a dummy call on this machine
	172	#D-* Examples:
	173	#D-
	174	function IGCM_sys_ChangeArchive {
	175	IGCM_debug_Print 1 " dummy function : IGCM_sys_ChangeArchive "
	176	}
	177
	178	#D-#==================================================
[16]	179	#D-function IGCM_sys_RshMaster
[800]	180	#D-* Purpose: Connection to frontend machine.
[16]	181	#D-* Examples:
	182	#D-
	183	function IGCM_sys_RshMaster {
[657]	184	IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
[664]	185	ssh obelix3 /bin/ksh <<-EOF
[16]	186	export libIGCM=${libIGCM}
[98]	187	export DEBUG_debug=${DEBUG_debug}
[16]	188	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
	189	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
	190	${@}
	191	EOF
[657]	192	if [ $? -gt 0 ] ; then
	193	echo "IGCM_sys_RshMaster : erreur."
	194	IGCM_debug_Exit "IGCM_sys_RshMaster"
	195	fi
	196	IGCM_debug_PopStack "IGCM_sys_RshMaster"
[16]	197	}
	198
	199	#D-#==================================================
[37]	200	#D-function IGCM_sys_RshArchive
	201	#D-* Purpose: Archive rsh command
	202	#D-* Examples:
	203	#D-
	204	function IGCM_sys_RshArchive {
[657]	205	IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
	206	/bin/ksh <<-EOF
[40]	207	${@}
	208	EOF
[811]	209	status=$?
	210	if [ ${status} -gt 0 ] ; then
	211	IGCM_debug_Print 2 "IGCM_sys_RshArchive : command failed error code ${status}"
[657]	212	IGCM_debug_Exit "IGCM_sys_RshArchive"
	213	fi
	214	IGCM_debug_PopStack "IGCM_sys_RshArchive"
[37]	215	}
	216
	217	#D-#==================================================
[16]	218	#D-function IGCM_sys_RshPost
[282]	219	#D-* Purpose: Post-process rsh command
[16]	220	#D-* Examples:
	221	#D-
	222	function IGCM_sys_RshPost {
[657]	223	IGCM_debug_PushStack "IGCM_sys_RshPost" $@
	224	if ( $DEBUG_sys ) ; then
	225	echo "IGCM_sys_RshPost :" $@
	226	fi
[800]	227
	228	# keep standard input (stdin) for the loop onto temporary file
	229	cat >tmp_IGCM_sys_RshPost_$$
	230
	231	# ============ FRONTEND START ============ #
	232
[811]	233	ssh obelix3 exec /bin/ksh <tmp_IGCM_sys_RshPost_$$
[657]	234	if [ $? -gt 0 ] ; then
	235	echo "IGCM_sys_RshPost : erreur."
	236	IGCM_debug_Exit "IGCM_sys_RshPost"
	237	fi
[800]	238	# delete temporary file
	239	\rm tmp_IGCM_sys_RshPost_$$
[657]	240	IGCM_debug_PopStack "IGCM_sys_RshPost"
[16]	241	}
	242
	243	#D-#==================================================
[153]	244	#D-function IGCM_sys_SendMail
	245	#D-* Purpose: Send mail when simulation is over
	246	#D-* Examples:
	247	#D-
	248	function IGCM_sys_SendMail {
[657]	249	IGCM_debug_PushStack "IGCM_sys_SendMail" $@
	250	if ( $DEBUG_sys ) ; then
	251	echo "IGCM_sys_SendMail :" $@
	252	fi
[153]	253
[657]	254	if ( ${ExitFlag} ) ; then
	255	status=failed
	256	else
	257	status=completed
	258	fi
[717]	259
[657]	260	cat << END_MAIL > job_end.mail
[153]	261	Dear ${LOGIN},
	262
[664]	263	Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
	264	Job started : ${DateBegin}
	265	Job ended : ${DateEnd}
[437]	266	Output files are available in ${R_SAVE}
[800]	267	Files to be rebuild are temporarily available in ${REBUILD_DIR}
	268	Pre-packed files are temporarily available in ${R_BUFR}
[452]	269	Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
[437]	270	END_MAIL
	271
[657]	272	if [ ! -z ${config_UserChoices_MailName} ] ; then
	273	mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
	274	elif [ -f ~/.forward ] ; then
	275	mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
	276	fi
[153]	277
[811]	278	sleep 10
	279	rm -f job_end.mail
	280
[657]	281	if [ $? -gt 0 ] ; then
	282	echo "IGCM_sys_SendMail : erreur."
	283	IGCM_debug_Exit "IGCM_sys_SendMail"
	284	fi
	285	IGCM_debug_PopStack "IGCM_sys_SendMail"
[153]	286	}
	287
	288	#D-#==================================================
[16]	289	#D-function IGCM_sys_Mkdir
	290	#D-* Purpose: Master locale mkdir command
	291	#D-* Examples:
	292	#D-
	293	function IGCM_sys_Mkdir {
[657]	294	IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
	295	if ( $DEBUG_sys ) ; then
	296	echo "IGCM_sys_Mkdir :" $@
	297	fi
	298	if [ ! -d ${1} ]; then
	299	\mkdir -p $1
	300	if [ $? -gt 0 ] ; then
	301	echo "IGCM_sys_Mkdir : erreur."
	302	IGCM_debug_Exit "IGCM_sys_Mkdir"
[16]	303	fi
[657]	304	fi
[717]	305	# vérification :
[657]	306	if [ ! -d ${1} ] ; then
	307	echo "IGCM_sys_Mkdir : erreur."
	308	IGCM_debug_Exit "IGCM_sys_Mkdir"
	309	fi
	310	IGCM_debug_PopStack "IGCM_sys_Mkdir"
[16]	311	}
	312
	313	#D-#==================================================
	314	#D-function IGCM_sys_MkdirArchive
	315	#D-* Purpose: Mkdir on Archive
	316	#D-* Examples:
	317	#D-
	318	function IGCM_sys_MkdirArchive {
[657]	319	IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
	320	if ( $DEBUG_sys ) ; then
	321	echo "IGCM_sys_MkdirArchive :" $@
	322	fi
[717]	323	#- creation de repertoire sur le serveur fichier
[657]	324	if [ ! -d ${1} ]; then
[811]	325	mkdir -p $1
	326	status=$?
	327
	328	if [ ${status} -gt 0 ] ; then
	329	IGCM_debug_Print 2 "IGCM_sys_MkdirArchive : mkdir failed error code ${status}"
[657]	330	IGCM_debug_Exit "IGCM_sys_MkdirArchive"
[16]	331	fi
[657]	332	fi
	333	IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
[16]	334	}
	335
	336	#D-#==================================================
	337	#D-function IGCM_sys_MkdirWork
	338	#D-* Purpose: Mkdir on Work
	339	#D-* Examples:
	340	#D-
	341	function IGCM_sys_MkdirWork {
[657]	342	IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
	343	if ( $DEBUG_sys ) ; then
	344	echo "IGCM_sys_MkdirWork :" $@
	345	fi
[717]	346	#- creation de repertoire sur le serveur fichier
[657]	347	if [ ! -d ${1} ]; then
	348	\mkdir -p $1
	349	if [ $? -gt 0 ] ; then
	350	echo "IGCM_sys_MkdirWork : erreur."
	351	IGCM_debug_Exit "IGCM_sys_MkdirWork"
[16]	352	fi
[657]	353	fi
	354	IGCM_debug_PopStack "IGCM_sys_MkdirWork"
[16]	355	}
	356
	357	#D-#==================================================
	358	#D-function IGCM_sys_Cd
	359	#D-* Purpose: master cd command
	360	#D-* Examples:
	361	#D-
	362	function IGCM_sys_Cd {
[657]	363	IGCM_debug_PushStack "IGCM_sys_Cd" $@
	364	if ( $DEBUG_sys ) ; then
	365	echo "IGCM_sys_Cd :" $@
	366	fi
	367	\cd $1
	368	if [ $? -gt 0 ] ; then
	369	echo "IGCM_sys_Cd : erreur."
	370	IGCM_debug_Exit "IGCM_sys_Cd"
	371	fi
	372	IGCM_debug_PopStack "IGCM_sys_Cd"
[16]	373	}
	374
	375	#D-#==================================================
	376	#D-function IGCM_sys_Chmod
	377	#D-* Purpose: Chmod
	378	#D-* Examples:
	379	#D-
	380	function IGCM_sys_Chmod {
[657]	381	IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
	382	if ( $DEBUG_sys ) ; then
	383	echo "IGCM_sys_Chmod :" $@
	384	fi
[809]	385	\chmod $@
	386	if [ $? -gt 0 ] ; then
	387	echo "IGCM_sys_Chmod : erreur."
	388	IGCM_debug_Exit "IGCM_sys_Chmod"
[657]	389	fi
	390	IGCM_debug_PopStack "IGCM_sys_Chmod"
[16]	391	}
	392
	393	#D-#==================================================
	394	#D-function IGCM_sys_FileSize
	395	#D-* Purpose: Filesize
	396	#D-* Examples:
	397	#D-
	398	function IGCM_sys_FileSize {
[657]	399	IGCM_debug_PushStack "IGCM_sys_FileSize" $@
[16]	400
[657]	401	typeset sizeF
	402	set +A sizeF -- $( ls -la ${1} )
	403	if [ $? -gt 0 ] ; then
	404	IGCM_debug_Exit "IGCM_sys_FileSize"
	405	fi
	406	eval ${2}=${sizeF[4]}
[16]	407
[657]	408	IGCM_debug_PopStack "IGCM_sys_FileSize"
[16]	409	}
	410
	411	#D-#==================================================
	412	#D-function IGCM_sys_TestDir
	413	#D-* Purpose: Test Directory that must exists
	414	#D-* Examples:
	415	#D-
	416	function IGCM_sys_TestDir {
[657]	417	IGCM_debug_PushStack "IGCM_sys_TestDir" $@
	418	if ( $DEBUG_sys ) ; then
	419	echo "IGCM_sys_TestDir :" $@
	420	fi
	421	typeset ExistFlag
	422	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
	423	IGCM_debug_PopStack "IGCM_sys_TestDir"
[67]	424
[657]	425	return ${ExistFlag}
[16]	426	}
	427
	428	#D-#==================================================
	429	#D-function IGCM_sys_TestDirArchive
	430	#D-* Purpose: Test Directory that must exists on Archive
	431	#D-* Examples:
	432	#D-
	433	function IGCM_sys_TestDirArchive {
[657]	434	IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
	435	if ( $DEBUG_sys ) ; then
	436	echo "IGCM_sys_TestDirArchive :" $@
	437	fi
	438	typeset ExistFlag
	439	ExistFlag=$( [ -d $1 ] && echo 0 \|\| echo 1 )
	440	IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
	441	return ${ExistFlag}
[16]	442	}
	443
	444	#D-#==================================================
[800]	445	#D-function IGCM_sys_IsFileArchived
	446	#D-* Purpose: Test file that must NOT EXISTS on Archive
	447	#D-* Examples:
	448	#D-
	449	function IGCM_sys_IsFileArchived {
	450	IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
	451	if ( $DEBUG_sys ) ; then
	452	echo "IGCM_sys_IsFileArchived :" $@
	453	fi
	454	typeset IsArchivedFlag
	455	# Never archived for this system
	456	IsArchivedFlag=1
	457	IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
	458
	459	return ${IsArchivedFlag}
	460	}
	461
	462	#D-#==================================================
[16]	463	#D-function IGCM_sys_TestFileArchive
	464	#D-* Purpose: Test file that must NOT EXISTS on Archive
	465	#D-* Examples:
	466	#D-
	467	function IGCM_sys_TestFileArchive {
[657]	468	IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
	469	typeset ExistFlag
	470	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
	471	IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
[67]	472
[657]	473	return ${ExistFlag}
[67]	474	}
	475
	476	#D-#==================================================
[657]	477	#D-function IGCM_sys_TestFileBuffer
	478	#D-* Purpose: Test file that must NOT EXISTS on Buffer
	479	#D-* Examples:
	480	#D-
	481	function IGCM_sys_TestFileBuffer {
	482	IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
	483	typeset ExistFlag
	484	ExistFlag=$( [ -f $1 ] && echo 0 \|\| echo 1 )
	485	IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
	486
	487	return ${ExistFlag}
	488	}
	489
	490	#D-#==================================================
[67]	491	#D-function IGCM_sys_CountFileArchive
	492	#D-* Purpose: Count files on Archive filesystem
	493	#D-* Examples:
	494	#D-
	495	function IGCM_sys_CountFileArchive {
[657]	496	IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
	497	ls ${@} 2>/dev/null \| wc -l
	498	if [ $? -gt 0 ] ; then
	499	echo "IGCM_sys_CountFileArchive : erreur."
	500	fi
	501	IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
[16]	502	}
	503
	504	#D-#==================================================
[657]	505	#D-function IGCM_sys_CountFileBuffer
	506	#D-* Purpose: Count files on Scratch filesystem
	507	#D-* Examples:
	508	#D-
	509	function IGCM_sys_CountFileBuffer {
	510	IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
	511	ls ${@} 2>/dev/null \| wc -l
	512	if [ $? -gt 0 ] ; then
	513	echo "IGCM_sys_CountFileBuffer : erreur."
	514	fi
	515	IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
	516	}
	517
	518	#D-#==================================================
[16]	519	#D-function IGCM_sys_Tree
	520	#D-* Purpose: Tree directories with files on ${ARCHIVE}
	521	#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
	522	#D-
	523	function IGCM_sys_Tree {
[657]	524	IGCM_debug_PushStack "IGCM_sys_Tree" $@
	525	if ( $DEBUG_sys ) ; then
	526	echo "IGCM_sys_Tree :" $@
	527	fi
[16]	528
[657]	529	\tree -f $@
[16]	530
[657]	531	IGCM_debug_PopStack "IGCM_sys_Tree"
[16]	532	}
	533
	534	#D-#==================================================
	535	#D-function IGCM_sys_Tar
[657]	536	#D-* Purpose: master tar command
[16]	537	#D-* Examples:
	538	#D-
	539	function IGCM_sys_Tar {
[657]	540	IGCM_debug_PushStack "IGCM_sys_Tar" $@
	541	if ( $DEBUG_sys ) ; then
	542	echo "IGCM_sys_Tar :" $@
	543	fi
	544	\tar cf $@
	545	if [ $? -gt 0 ] ; then
	546	echo "IGCM_sys_Tar : erreur."
	547	IGCM_debug_Exit "IGCM_sys_Tar"
	548	fi
	549	IGCM_debug_PopStack "IGCM_sys_Tar"
[16]	550	}
	551
	552	#D-#==================================================
	553	#D-function IGCM_sys_UnTar
	554	#D-* Purpose: master un-tar command
	555	#D-* Examples:
	556	#D-
	557	function IGCM_sys_UnTar {
[657]	558	IGCM_debug_PushStack "IGCM_sys_UnTar" $@
	559	if ( $DEBUG_sys ) ; then
	560	echo "IGCM_sys_UnTar :" $@
	561	fi
	562	\tar xvf $1
	563	if [ $? -gt 0 ] ; then
	564	echo "IGCM_sys_UnTar : erreur."
	565	IGCM_debug_Exit "IGCM_sys_UnTar"
	566	fi
	567	IGCM_debug_PopStack "IGCM_sys_UnTar"
[16]	568	}
	569
	570	#D-#==================================================
	571	#D-function IGCM_sys_Qsub
	572	#D-* Purpose: Qsub new job
	573	#D-* Examples:
	574	#D-
	575	function IGCM_sys_Qsub {
[657]	576	IGCM_debug_PushStack "IGCM_sys_Qsub" $@
	577	if ( $DEBUG_sys ) ; then
	578	echo "IGCM_sys_Qsub :" $@
	579	fi
[811]	580	typeset status
[657]	581	/usr/local/bin/qsub -q medium -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1
[811]	582	status=$?
	583	if [ ${status} -gt 0 ] ; then
	584	IGCM_debug_Print 2 "IGCM_sys_Qsub $1 : error code ${status}"
[657]	585	IGCM_debug_Exit "IGCM_sys_Qsub"
	586	fi
	587	IGCM_debug_PopStack "IGCM_sys_Qsub"
[16]	588	}
	589
	590	#D-#==================================================
	591	#D-function IGCM_sys_QsubPost
	592	#D-* Purpose: Qsub new job on scalaire
	593	#D-* Examples:
	594	#D-
	595	function IGCM_sys_QsubPost {
[657]	596	IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
	597	if ( $DEBUG_sys ) ; then
	598	echo "IGCM_sys_QsubPost :" $@
	599	fi
[811]	600	typeset status
[657]	601	/usr/local/bin/qsub -q medium -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job -v ${listVarEnv}
[811]	602	status=$?
	603	if [ ${status} -gt 0 ] ; then
	604	IGCM_debug_Print 2 "IGCM_sys_QsubPost $1 : error code ${status}"
[657]	605	IGCM_debug_Exit "IGCM_sys_QsubPost"
	606	fi
	607	IGCM_debug_PopStack "IGCM_sys_QsubPost"
[16]	608	}
	609
	610	#D-*************************
[657]	611	#D- File transfer functions
[16]	612	#D-*************************
	613	#D-
	614
	615	#D-#==================================================
	616	#D-function IGCM_sys_Rsync_out
	617	#D-* Purpose: treat return val of rsync
	618	#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
	619	#D- Error values and explanations can depend on your system version.
	620	function IGCM_sys_Rsync_out {
[717]	621	status=$1
	622	if [ ! $status ] ; then
[657]	623	echo "rsync error !"
	624	fi
[16]	625
[657]	626	if [ $MYLANG = "fr" ]; then
[717]	627	case $status in
[657]	628	0) return ;;
	629	1) echo "Erreur de rsync ; RERR_SYNTAX : "
	630	echo "Erreur de syntaxe ou d'utilisation."
	631	return;;
	632	2) echo "Erreur de rsync ; RERR_PROTOCOL : "
	633	echo "Incompatibilité de protocole."
	634	return;;
	635	3) echo "Erreur de rsync ; RERR_FILESELECT 3"
	636	echo "Erreurs lors de la sélection des fichiers d'entrée sortie et"
	637	echo "répertoires"
	638	return;;
	639	4) echo "Erreur de rsync ; RERR_UNSUPPORTED"
	640	echo "Action demandée non supportée : une tentative de manipulation de"
	641	echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a"
	642	echo "été faite ; ou une option qui est supportée par le client mais"
	643	echo "pas par le serveur a été spécifiée."
	644	return;;
	645	10) echo "Erreur de rsync ; RERR_SOCKETIO"
	646	echo "Erreur dans le socket d'entrée sortie"
	647	return;;
	648	11) echo "Erreur de rsync ; RERR_FILEIO"
	649	echo "Erreur d'entrée sortie fichier"
	650	return;;
	651	12) echo "Erreur de rsync ; RERR_STREAMIO"
	652	echo "Erreur dans flux de donnée du protocole rsync"
	653	return;;
	654	13) echo "Erreur de rsync ; RERR_MESSAGEIO"
	655	echo "Erreur avec les diagnostics du programme"
	656	return;;
	657	14) echo "Erreur de rsync ; RERR_IPC"
	658	echo "Erreur dans le code IPC"
	659	return;;
	660	20) echo "Erreur de rsync ; RERR_SIGNAL"
	661	echo "SIGUSR1 ou SIGINT reçu"
	662	return;;
	663	21) echo "Erreur de rsync ; RERR_WAITCHILD"
	664	echo "Une erreur retournée par waitpid()"
	665	return;;
	666	22) echo "Erreur de rsync ; RERR_MALLOC"
	667	echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
	668	return;;
	669	23) echo ""
	670	echo "Erreur fichier inexistant"
	671	return;;
	672	30) echo "Erreur de rsync ; RERR_TIMEOUT"
	673	echo "Temps d'attente écoulé dans l'envoi/réception de données"
	674	return;;
[717]	675	*) echo "Erreur de rsync : code de retour de rsync inconnu :" $status
[657]	676	return;;
	677	esac
	678	elif [ $MYLANG = "en" ] ; then
[717]	679	case $status in
[657]	680	0) return;;
	681	1) echo "rsync error : Syntax or usage error "
	682	return;;
	683	2) echo "rsync error : Protocol incompatibility "
	684	return;;
	685	3) echo "rsync error : Errors selecting input/output files, dirs"
	686	return;;
	687	4) echo "rsync error : Requested action not supported: an attempt"
	688	echo "was made to manipulate 64-bit files on a platform that cannot support"
	689	echo "them; or an option was specified that is supported by the client and"
	690	echo "not by the server."
	691	return;;
	692	5) echo "rsync error : Error starting client-server protocol"
	693	return;;
	694	10) echo "rsync error : Error in socket I/O "
	695	return;;
	696	11) echo "rsync error : Error in file I/O "
	697	return;;
	698	12) echo "rsync error : Error in rsync protocol data stream "
	699	return;;
	700	13) echo "rsync error : Errors with program diagnostics "
	701	return;;
	702	14) echo "rsync error : Error in IPC code "
	703	return;;
	704	20) echo "rsync error : Received SIGUSR1 or SIGINT "
	705	return;;
	706	21) echo "rsync error : Some error returned by waitpid() "
	707	return;;
	708	22) echo "rsync error : Error allocating core memory buffers "
	709	return;;
	710	23) echo "rsync error : Partial transfer due to error"
	711	return;;
	712	24) echo "rsync error : Partial transfer due to vanished source files"
	713	return;;
	714	30) echo "rsync error : Timeout in data send/receive "
	715	return;;
[717]	716	*) echo "rsync error : return code of rsync unknown :" $status
[657]	717	return;;
	718	esac
	719	else
	720	echo "unknown language $MYLANG."
	721	return
	722	fi
[16]	723	}
[657]	724
[16]	725	#D-#==================================================
[811]	726	#D-function IGCM_sys_Miror_libIGCM
	727	#D-* Purpose: Mirror libIGCM PATH and lib to frontend
	728	#D-* Examples:
	729	#D-
	730	function IGCM_sys_Mirror_libIGCM {
	731	IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
	732	if ( $DEBUG_sys ) ; then
	733	echo "IGCM_sys_Mirror_libIGCM"
	734	fi
	735
	736	typeset status
	737
	738	mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
	739
	740	echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
	741	${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
	742	status=$?
	743
	744	if [ ${status} -gt 0 ] ; then
	745	echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on frontend."
	746	cat out_rsync
	747	fi
	748	IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
	749	}
	750
	751	#D-#==================================================
[16]	752	#D-function IGCM_sys_Cp
	753	#D-* Purpose: generic cp
	754	#D-* Examples:
	755	#D-
	756	function IGCM_sys_Cp {
[657]	757	IGCM_debug_PushStack "IGCM_sys_Cp" $@
	758	if ( $DEBUG_sys ) ; then
	759	echo "IGCM_sys_Cp :" $@
	760	fi
[16]	761
[717]	762	typeset status
[16]	763
[717]	764	echo cp $@ > out_rsync 2>&1
	765	\cp $@ >> out_rsync 2>&1
	766	status=$?
[657]	767
[717]	768	if [ ${status} -gt 0 ] ; then
	769	echo "IGCM_sys_Cp : error code ${status}"
[657]	770	cat out_rsync
	771	IGCM_debug_Exit "IGCM_sys_Cp"
	772	else
[717]	773	\rm out_rsync
[657]	774	fi
	775	IGCM_debug_PopStack "IGCM_sys_Cp"
[16]	776	}
	777
	778	#D-#==================================================
	779	#D-function IGCM_sys_Rm
	780	#D-* Purpose: generic rm
	781	#D-* Examples:
	782	#D-
	783	function IGCM_sys_Rm {
[657]	784	IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
	785	if ( $DEBUG_sys ) ; then
	786	echo "IGCM_sys_Rm :" $@
	787	fi
[16]	788
[717]	789	typeset status
[16]	790
[657]	791	echo rm $@ > out_rsync 2>&1
	792	\rm $@ >> out_rsync 2>&1
[717]	793	status=$?
[657]	794
[717]	795	if [ ${status} -gt 0 ] ; then
	796	echo "IGCM_sys_Rm : error code ${status}"
[657]	797	cat out_rsync
	798	IGCM_debug_Exit "IGCM_sys_Rm"
	799	else
[717]	800	\rm out_rsync
[657]	801	fi
	802	IGCM_debug_PopStack "IGCM_sys_Rm"
[16]	803	}
	804
	805	#D-#==================================================
[203]	806	#D-function IGCM_sys_RmRunDir
	807	#D-* Purpose: rm tmpdir (dummy function most of the time batch
	808	#D- scheduler will do the job)
	809	#D-* Examples:
	810	#D-
	811	function IGCM_sys_RmRunDir {
[657]	812	IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
	813	if ( $DEBUG_sys ) ; then
	814	echo "IGCM_sys_RmRunDir :" $@
	815	fi
[282]	816
[717]	817	typeset status
[282]	818
[657]	819	echo rm $@ > out_rsync 2>&1
	820	\rm $@ >> out_rsync 2>&1
[717]	821	status=$?
[282]	822
[717]	823	if [ ${status} -gt 0 ] ; then
[811]	824	echo "IGCM_sys_RmRunDir : rm error code is ${status}."
[657]	825	cat out_rsync
	826	IGCM_debug_Exit "IGCM_sys_RmRunDir"
[717]	827	else
	828	\rm out_rsync
[657]	829	fi
	830	IGCM_debug_PopStack "IGCM_sys_RmRunDir"
[203]	831	}
	832
	833	#D-#==================================================
[16]	834	#D-function IGCM_sys_Mv
	835	#D-* Purpose: generic move
	836	#D-* Examples:
	837	#D-
	838	function IGCM_sys_Mv {
[657]	839	IGCM_debug_PushStack "IGCM_sys_Mv" $@
	840	if ( $DEBUG_sys ) ; then
	841	echo "IGCM_sys_Mv :" $@
	842	fi
[16]	843
[657]	844	if [ $DRYRUN = 0 ]; then
[16]	845
[717]	846	typeset status
[657]	847
	848	echo mv $@ > out_rsync 2>&1
	849	\mv $@ >> out_rsync 2>&1
[717]	850	status=$?
[657]	851
[717]	852	if [ ${status} -gt 0 ] ; then
	853	echo "IGCM_sys_Mv : error code ${status}"
[657]	854	cat out_rsync
	855	IGCM_debug_Exit "IGCM_sys_Mv"
[173]	856	else
[717]	857	\rm out_rsync
[16]	858	fi
[657]	859	fi
	860	IGCM_debug_PopStack "IGCM_sys_Mv"
[16]	861	}
	862
	863	#D-#==================================================
	864	#D-function IGCM_sys_Put_Dir
	865	#D-* Purpose: Copy a complete directory on $(ARCHIVE)
	866	#D-* Examples:
	867	#D-
	868	function IGCM_sys_Put_Dir {
[657]	869	IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
	870	if ( $DEBUG_sys ) ; then
	871	echo "IGCM_sys_Put_Dir :" $@
	872	fi
	873	if [ $DRYRUN = 0 ]; then
	874	if [ ! -d ${1} ] ; then
	875	echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
	876	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
	877	return
[16]	878	fi
	879
[717]	880	typeset status
[16]	881
[717]	882	# Only if we use rsync
	883	#IGCM_sys_TestDirArchive $( dirname $2 )
	884	#
	885	#USUAL WAY
	886	\cp -r $1 $2 > out_rsync 2>&1
	887	status=$?
[16]	888
[717]	889	if [ ${status} -gt 0 ] ; then
[811]	890	IGCM_debug_Print 2 "IGCM_sys_Put_Dir : cp failed error code ${status}"
[657]	891	cat out_rsync
	892	IGCM_debug_Exit "IGCM_sys_Put_Dir"
[16]	893	else
[717]	894	\rm out_rsync
[16]	895	fi
[657]	896	fi
	897	IGCM_debug_PopStack "IGCM_sys_Put_Dir"
[16]	898	}
	899
	900	#D-#==================================================
	901	#D-function IGCM_sys_Get_Dir
[717]	902	#D-* Purpose: Copy a complete directory from ${ARCHIVE}
[16]	903	#D-* Examples:
	904	#D-
	905	function IGCM_sys_Get_Dir {
[657]	906	IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
	907	if ( $DEBUG_sys ) ; then
	908	echo "IGCM_sys_Get_Dir :" $@
	909	fi
	910	if [ $DRYRUN = 0 ]; then
	911	if [ ! -d ${1} ] ; then
	912	echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
	913	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
	914	return
[16]	915	fi
	916
[717]	917	typeset status
[16]	918
[719]	919	#USUAL WAY
[811]	920	\cp -ur $1 $2 > out_rsync 2>&1
[717]	921	status=$?
[16]	922
[717]	923	if [ ${status} -gt 0 ] ; then
[811]	924	IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status}"
[657]	925	cat out_rsync
	926	IGCM_debug_Exit "IGCM_sys_Get_Dir"
[16]	927	else
[717]	928	\rm out_rsync
[16]	929	fi
[657]	930	fi
	931	IGCM_debug_PopStack "IGCM_sys_Get_Dir"
[16]	932	}
	933
	934	#D-#==================================================
	935	#D-function IGCM_sys_Get_Master
	936	#D-* Purpose: Copy a complete directory from MASTER filesystem
	937	#D-* Examples:
	938	#D-
	939	function IGCM_sys_Get_Master {
[657]	940	IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
	941	if ( $DEBUG_sys ) ; then
	942	echo "IGCM_sys_Get_Master :" $@
	943	fi
	944	if [ $DRYRUN = 0 ]; then
	945	if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
	946	echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
	947	IGCM_debug_PopStack "IGCM_sys_Get_Master"
	948	return
[16]	949	fi
	950
[811]	951	typeset NB_ESSAI DELAI status i
	952	# number of tentative
	953	NB_ESSAI=3
	954	# time delay between tentative
	955	DELAI=2
[16]	956
[811]	957	i=0
	958	while [ $i -lt $NB_ESSAI ] ; do
	959	\cp -urL $1 $2 > out_rsync 2>&1
	960	status=$?
	961	if [ ${status} -gt 0 ]; then
	962	IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
	963	IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
	964	sleep $DELAI
	965	else
	966	break
	967	fi
	968	(( i = i + 1 ))
	969	done
[16]	970
[717]	971	if [ ${status} -gt 0 ] ; then
[657]	972	echo "IGCM_sys_Get_Master : error."
	973	cat out_rsync
	974	IGCM_debug_Exit "IGCM_sys_Get_Master"
[16]	975	else
[811]	976	\rm out_rsync
[16]	977	fi
[657]	978	fi
	979	IGCM_debug_PopStack "IGCM_sys_Get_Master"
[16]	980	}
	981
[811]	982	#====================================================
	983	#- Call IGCM_sys_Mirror_libIGCM now !
	984	if ( $MirrorlibIGCM ) ; then
	985	IGCM_sys_Mirror_libIGCM
	986	fi
	987
[16]	988	#D-#==================================================
	989	#D-function IGCM_sys_Put_Rest
[717]	990	#D-* Purpose: Put computied restarts on ${ARCHIVE}.
[282]	991	#D- File and target directory must exist.
[16]	992	#D-* Examples:
	993	#D-
	994	function IGCM_sys_Put_Rest {
[657]	995	IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
	996	if ( $DEBUG_sys ) ; then
	997	echo "IGCM_sys_Put_Rest :" $@
	998	fi
	999	if [ $DRYRUN = 0 ]; then
	1000	if [ ! -f ${1} ] ; then
	1001	echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
	1002	IGCM_debug_Exit "IGCM_sys_Put_Rest"
[16]	1003	fi
[717]	1004
	1005	typeset status
	1006	#
[657]	1007	if [ X${JobType} = XRUN ] ; then
	1008	IGCM_sys_Chmod 444 ${1}
	1009	fi
[717]	1010	#
[811]	1011	# Only if we use rsync
	1012	#IGCM_sys_MkdirArchive $( dirname $2 )
	1013	#
	1014	#USUAL WAY
[717]	1015	\cp $1 $2 > out_rsync 2>&1
	1016	status=$?
[16]	1017
[717]	1018	# #RSYNC WITH NETWORK SSH CALL
	1019	# echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
	1020	# ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
[16]	1021
[717]	1022	# #RSYNC WITH NFS USE
	1023	# echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
	1024	# ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
[16]	1025
[717]	1026	# status=$?
	1027	# IGCM_sys_Rsync_out $status
	1028
	1029	# ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
	1030	# (( status=status+$? ))
	1031
	1032	if [ ${status} -gt 0 ] ; then
	1033	echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
[657]	1034	cat out_rsync
	1035	IGCM_debug_Exit "IGCM_sys_Put_Rest"
	1036	else
[717]	1037	\rm out_rsync
[657]	1038	fi
	1039	fi
	1040	IGCM_debug_PopStack "IGCM_sys_Put_Rest"
	1041	}
[16]	1042
[657]	1043	#D-#==================================================
	1044	#D-function IGCM_sys_PutBuffer_Rest
	1045	#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
	1046	#D- File and target directory must exist.
	1047	#D-* Examples:
	1048	#D-
	1049	function IGCM_sys_PutBuffer_Rest {
	1050	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
	1051	if ( $DEBUG_sys ) ; then
	1052	echo "IGCM_sys_PutBuffer_Rest :" $@
	1053	fi
	1054	if [ $DRYRUN = 0 ]; then
	1055	if [ ! -f ${1} ] ; then
	1056	echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
	1057	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
	1058	fi
[16]	1059
[717]	1060	typeset status
[657]	1061	#
	1062	if [ X${JobType} = XRUN ] ; then
	1063	IGCM_sys_Chmod 444 ${1}
	1064	fi
	1065
	1066	#
	1067	# USUAL WAY
	1068	\cp $1 $2 > out_rsync 2>&1
[717]	1069	status=$?
[657]	1070
[717]	1071	if [ ${status} -gt 0 ] ; then
	1072	echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
[811]	1073	[ -f ${2} ] && ls -l ${2}
	1074	[ -f ${2}/${1} ] && ls -l ${2}/${1}
[657]	1075	cat out_rsync
	1076	IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
[16]	1077	else
[657]	1078	\rm out_rsync
[16]	1079	fi
[657]	1080	fi
	1081	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
[16]	1082	}
	1083
	1084	#D-#==================================================
[801]	1085	#D-function IGCM_sys_PrepareTaredRestart
	1086	#D-* Purpose: Prepare tared restart to be access by computing job. Identity here.
	1087	#D-* Examples:
	1088	#D-
	1089	function IGCM_sys_PrepareTaredRestart {
	1090	IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@
	1091	echo $1
	1092	IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart"
	1093	}
	1094
	1095	#D-#==================================================
[16]	1096	#D-function IGCM_sys_Put_Out
[717]	1097	#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
[16]	1098	#D-* Examples:
	1099	#D-
	1100	function IGCM_sys_Put_Out {
[657]	1101	IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
	1102	if ( $DEBUG_sys ) ; then
	1103	echo "IGCM_sys_Put_Out :" $@
	1104	fi
[811]	1105
	1106	typeset status
	1107
[657]	1108	if [ $DRYRUN = 0 ]; then
[811]	1109	if [ ! -f ${1} ] ; then
[657]	1110	echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
	1111	IGCM_debug_PopStack "IGCM_sys_Put_Out"
	1112	return 1
[16]	1113	fi
[719]	1114	#
[811]	1115	IGCM_sys_MkdirArchive $( dirname $2 )
	1116	#
[657]	1117	if [ X${JobType} = XRUN ] ; then
	1118	if [ X${3} = X ] ; then
	1119	IGCM_sys_Chmod 444 ${1}
	1120	fi
	1121	fi
[717]	1122	#
[16]	1123
[657]	1124	echo ${RSYNC} ${RSYNC_opt} $1 $2 > out_rsync 2>&1
	1125	${RSYNC} ${RSYNC_opt} $1 $2 >> out_rsync 2>&1
[717]	1126	status=$?
	1127	IGCM_sys_Rsync_out $status
[16]	1128
[657]	1129	${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
[717]	1130	(( status=status+$? ))
[16]	1131
[717]	1132	if [ ${status} -gt 0 ] ; then
[811]	1133	IGCM_debug_Print 2 "IGCM_sys_Put_Out : rsync failed error code ${status}"
[657]	1134	cat out_rsync
	1135	IGCM_debug_Exit "IGCM_sys_Put_Out"
[16]	1136	else
[717]	1137	\rm out_rsync
[16]	1138	fi
[657]	1139	fi
	1140	IGCM_debug_PopStack "IGCM_sys_Put_Out"
	1141	return 0
[16]	1142	}
	1143
	1144	#D-#==================================================
[657]	1145	#D-function IGCM_sys_PutBuffer_Out
	1146	#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
	1147	#D-* Examples:
	1148	#D-
	1149	function IGCM_sys_PutBuffer_Out {
	1150	IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
	1151	if ( $DEBUG_sys ) ; then
	1152	echo "IGCM_sys_PutBuffer_Out :" $@
	1153	fi
[719]	1154
[811]	1155	typeset NB_ESSAI DELAI status i exist skip
[719]	1156
[811]	1157	# number of tentative
	1158	NB_ESSAI=3
	1159	# time delay between tentative
	1160	DELAI=2
	1161
[657]	1162	if [ $DRYRUN = 0 ]; then
	1163	if [ ! -f ${1} ] ; then
	1164	echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
	1165	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
	1166	return 1
	1167	fi
	1168	#
	1169	IGCM_sys_Mkdir $( dirname $2 )
	1170	#
	1171
[811]	1172	exist=false
	1173	skip=false
	1174	if [ -f $2 ] ; then
	1175	IGCM_debug_Print 1 "$2 already exist"
	1176	exist=true
	1177	if [ "X$( diff $1 $2 )" = X ] ; then
	1178	IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
	1179	status=0
	1180	skip=true
	1181	else
	1182	IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
	1183	skip=false
[657]	1184	fi
	1185	fi
	1186	#
[811]	1187	if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
	1188	IGCM_sys_Chmod u+w $2
	1189	fi
[657]	1190
[811]	1191	if [ X${skip} = Xfalse ] ; then
	1192	i=0
	1193	while [ $i -lt $NB_ESSAI ] ; do
	1194	# USUAL WAY
	1195	\cp $1 $2 > out_rsync 2>&1
	1196	status=$?
	1197	if [ ${status} -gt 0 ]; then
	1198	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
	1199	IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
	1200	[ -f ${2} ] && ls -l ${2}
	1201	[ -f ${2}/${1} ] && ls -l ${2}/${1}
	1202	sleep $DELAI
	1203	else
	1204	break
	1205	fi
	1206	(( i = i + 1 ))
	1207	done
	1208	fi
	1209
[717]	1210	if [ ${status} -gt 0 ] ; then
[657]	1211	echo "IGCM_sys_PutBuffer_Out : error."
[811]	1212	[ -f ${2} ] && ls -l ${2}
	1213	[ -f ${2}/${1} ] && ls -l ${2}/${1}
[657]	1214	cat out_rsync
	1215	IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
	1216	else
[811]	1217
	1218	if [ X${JobType} = XRUN ] ; then
	1219	if [ X${3} = X ] ; then
	1220	[ -f ${2} ] && IGCM_sys_Chmod 444 ${2}
	1221	[ -f ${2}/${1} ] && IGCM_sys_Chmod 444 ${2}/${1}
	1222	fi
	1223	fi
	1224
[657]	1225	\rm out_rsync
	1226	fi
	1227	fi
	1228	IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
	1229	return 0
	1230	}
	1231
	1232	#D-#==================================================
[16]	1233	#D-function IGCM_sys_Get
	1234	#D-* Purpose: Get a file from ${ARCHIVE}
	1235	#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
	1236	#D- IGCM_sys_Get /l Array_contain_myfiles /destpath/
	1237	function IGCM_sys_Get {
[657]	1238	IGCM_debug_PushStack "IGCM_sys_Get" $@
[16]	1239
[811]	1240	typeset DEST status dm_liste
[16]	1241
[657]	1242	if ( $DEBUG_sys ) ; then
	1243	echo "IGCM_sys_Get :" $@
	1244	fi
	1245	if [ $DRYRUN -le 2 ]; then
	1246	if [ X${1} = X'/l' ] ; then
[717]	1247	# test if the first file is present in the old computation :
[657]	1248	eval set +A dm_liste \${${2}}
	1249	else
	1250	dm_liste=${1}
[16]	1251	fi
[657]	1252	eval DEST=\${${#}}
[16]	1253
[717]	1254	# test if the (first) file is present in the old computation :
[657]	1255	IGCM_sys_TestFileArchive ${dm_liste[0]}
[717]	1256	status=$?
	1257	if [ ${status} -gt 0 ] ; then
[657]	1258	echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ."
	1259	IGCM_debug_Exit "IGCM_sys_Get"
[811]	1260	return
[657]	1261	fi
[16]	1262
[811]	1263	#USUAL WAY
	1264	\cp ${dm_liste[*]} ${DEST} > out_rsync 2>&1
	1265	status=$?
[16]	1266
[811]	1267	if [ ${status} -gt 0 ] ; then
	1268	IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status}"
[657]	1269	cat out_rsync
	1270	IGCM_debug_Exit "IGCM_sys_Get"
[16]	1271	else
[717]	1272	\rm out_rsync
[16]	1273	fi
[657]	1274	fi
	1275	IGCM_debug_PopStack "IGCM_sys_Get"
[16]	1276	}
	1277
	1278	#D-#==================================================
[657]	1279	#D-function IGCM_sys_GetBuffer
	1280	#D-* Purpose: Get a file from ${SCRATCHDIR}
	1281	#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
	1282	#D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
	1283	function IGCM_sys_GetBuffer {
	1284	IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
	1285
[811]	1286	typeset DEST buf_liste target file_work
	1287	typeset NB_ESSAI DELAI status i
[657]	1288
	1289	if ( $DEBUG_sys ) ; then
	1290	echo "IGCM_sys_GetBuffer :" $@
	1291	fi
[811]	1292
	1293	# number of tentative
	1294	NB_ESSAI=3
	1295	# time delay between tentative
	1296	DELAI=2
	1297
[657]	1298	if [ $DRYRUN -le 2 ]; then
	1299	if [ X${1} = X'/l' ] ; then
	1300	# test if the first file is present in the old computation :
	1301	eval set +A buf_liste \${${2}}
	1302	else
	1303	eval set +A buf_liste ${1}
	1304	fi
	1305	eval DEST=\${${#}}
	1306
	1307	#USUAL WAY
	1308	if [ X${1} = X'/l' ] ; then
	1309	for target in ${buf_liste[*]} ; do
	1310	local_file=$( basename ${target} )
[811]	1311	i=0
	1312	while [ $i -lt $NB_ESSAI ] ; do
	1313	\cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
	1314	status=$?
	1315	if [ ${status} -gt 0 ]; then
	1316	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
	1317	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
	1318	sleep $DELAI
	1319	else
	1320	break
	1321	fi
	1322	(( i = i + 1 ))
	1323	done
	1324	if [ ${status} -gt 0 ] ; then
	1325	echo "IGCM_sys_Get : error"
	1326	cat out_rsync
	1327	\rm out_rsync
	1328	IGCM_debug_Exit "IGCM_sys_GetBuffer"
	1329	else
	1330	\rm out_rsync
	1331	fi
[657]	1332	done
	1333	else
[811]	1334	i=0
	1335	while [ $i -lt $NB_ESSAI ] ; do
	1336	\cp ${buf_liste} ${DEST} >> out_rsync 2>&1
	1337	status=$?
	1338	if [ ${status} -gt 0 ]; then
	1339	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
	1340	IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
	1341	sleep $DELAI
	1342	else
	1343	break
	1344	fi
	1345	(( i = i + 1 ))
	1346	done
	1347	if [ ${status} -gt 0 ] ; then
	1348	echo "IGCM_sys_Get : error"
	1349	cat out_rsync
	1350	\rm out_rsync
	1351	IGCM_debug_Exit "IGCM_sys_GetBuffer"
	1352	else
	1353	\rm out_rsync
	1354	fi
[657]	1355	fi
	1356	fi
	1357	IGCM_debug_PopStack "IGCM_sys_GetBuffer"
	1358	}
	1359
	1360	#D-#==================================================
	1361	#D-function IGCM_sys_GetDate_FichWork
	1362	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
	1363	#D-* Examples:
	1364	#D-
	1365	function IGCM_sys_GetDate_FichWork {
	1366	IGCM_debug_PushStack "IGCM_sys_FichWork" $@
	1367	if ( $DEBUG_sys ) ; then
	1368	echo "IGCM_sys_GetDate_FichWork :" $@
	1369	fi
	1370	typeset dateF
	1371	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
	1372	eval ${2}=${dateF[5]}
	1373
[800]	1374	# donne la date filesys d'un fichier sur la machine work
[657]	1375	IGCM_debug_PopStack "IGCM_sys_FichWork"
	1376	}
	1377
	1378	#D-#==================================================
	1379	#D-function IGCM_sys_GetDate_FichArchive
	1380	#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
	1381	#D-* Examples:
	1382	#D-
	1383	function IGCM_sys_GetDate_FichArchive {
	1384	IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
	1385	if ( $DEBUG_sys ) ; then
	1386	echo "IGCM_sys_GetDate_FichArchive :" $@
	1387	fi
	1388	typeset dateF
	1389	set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
	1390	eval ${2}=${dateF[5]}
	1391
	1392	IGCM_debug_PopStack "IGCM_sys_FichArchive"
	1393	}
	1394
	1395	#D-#==================================================
[343]	1396	#D-function IGCM_sys_Dods_Rm
[717]	1397	#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
[343]	1398	#D-* Examples:
	1399	#D-
	1400	function IGCM_sys_Dods_Rm {
[657]	1401	if ( $DEBUG_sys ) ; then
	1402	echo "IGCM_sys_Dods_Rm :" $@
	1403	fi
	1404	return 0
[343]	1405	}
	1406
	1407	#D-#==================================================
	1408	#D-function IGCM_sys_Dods_Cp
[717]	1409	#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
[343]	1410	#D-* Examples:
	1411	#D-
	1412	function IGCM_sys_Dods_Cp {
[657]	1413	if ( $DEBUG_sys ) ; then
	1414	echo "IGCM_sys_Dods_Cp :" $@
	1415	fi
	1416	return 0
[343]	1417	}
	1418
	1419	#D-#==================================================
[16]	1420	#D-function IGCM_sys_Put_Dods
[811]	1421	#D-* Purpose: Put ${ARCHIVE} files on DODS internet protocole. Dummy function here
[16]	1422	#D-* Examples:
	1423	#D-
	1424	function IGCM_sys_Put_Dods {
[657]	1425	IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
	1426	if ( $DEBUG_sys ) ; then
	1427	echo "IGCM_sys_Put_Dods :" $@
	1428	fi
	1429	IGCM_debug_PopStack "IGCM_sys_Put_Dods"
[16]	1430	}
	1431
[657]	1432	##############################################################
	1433	# REBUILD OPERATOR
[536]	1434
[811]	1435	#D-#==================================================
	1436	#D-function IGCM_sys_rebuild
	1437	#D-* Purpose: rebuild parallel files
	1438	#D-* Examples:
	1439	#D-
[657]	1440	function IGCM_sys_rebuild {
	1441	IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
	1442	if ( $DEBUG_sys ) ; then
	1443	echo "IGCM_sys_rebuild :" $@
	1444	fi
[717]	1445
[811]	1446	typeset NB_ESSAI DELAI status i firstArg
	1447	# number of tentative
	1448	NB_ESSAI=3
	1449	# time delay between tentative
	1450	DELAI=2
[717]	1451
[811]	1452	i=0
	1453	while [ $i -lt $NB_ESSAI ] ; do
	1454	/home/users/igcmg/rebuild/bin/rebuild -f -o $@ > out_rsync 2>&1
	1455	status=$?
	1456	if [ ${status} -gt 0 ] ; then
	1457	IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
	1458	cat out_rsync
	1459	\rm out_rsync
	1460	IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
	1461	firstArg=${1}
	1462	\rm ${firstArg}
	1463	sleep $DELAI
	1464	else
	1465	\rm out_rsync
	1466	break
	1467	fi
	1468	(( i = i + 1 ))
	1469	done
	1470
[717]	1471	if [ ${status} -gt 0 ] ; then
[811]	1472	echo "IGCM_sys_rebuild : rebuild error code is ${status}"
[657]	1473	IGCM_debug_Exit "rebuild"
	1474	fi
	1475
	1476	IGCM_debug_PopStack "IGCM_sys_rebuild"
[16]	1477	}
	1478
[811]	1479	#D-#==================================================
	1480	#D-function IGCM_sys_rebuild_station
	1481	#D-* Purpose: rebuild parallel files describing station
	1482	#D-* Examples:
	1483	#D-
[697]	1484	function IGCM_sys_rebuild_station {
	1485	IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
	1486	typeset i list_opt file_in file_out prefix_invert list_invert
	1487	if ( $DEBUG_sys ) ; then
	1488	echo "IGCM_sys_rebuild_station :" $@
	1489	fi
	1490	list_opt=$@
	1491
[800]	1492	# Invert Axis : t,x -> x,t
[697]	1493	# t,pres,x -> x,t,pres
	1494	# So that we can concatenate along x
	1495	i=0
	1496	for file_in in ${list_opt} ; do
	1497	(( i = i + 1))
	1498	[ ${i} = 1 ] && file_out=${file_in} && continue
	1499	prefix_invert=$( basename ${file_in} .nc )
	1500	IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
	1501	list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
	1502	done
	1503
	1504	# Concatenate
	1505	IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
	1506
	1507	# Re-ivert file
	1508	IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
	1509
	1510	# Station re-ordering is too expansive to be run within libICGM
	1511	# This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
	1512	# This re-ordering must be done "in memory" by the cmorization process
	1513	# Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
	1514	# BEGIN reordering
	1515
	1516	# Only LMDZ text output contains the exact ordering of the station.
	1517	# We isolate this in the code below:
	1518	# 0 38 -157.5000000000000 70.98591549295774
	1519	# 0 54 27.49999999999999 67.18309859154928
	1520	# 0 56 -62.50000000000001 82.39436619718309
	1521	# 0 79 12.49999999999999 78.59154929577466
	1522	# 0 116 -165.0000000000000 76.05633802816901
	1523	# 0 117 130.0000000000000 70.98591549295774
	1524	# 0 118 110.0000000000000 87.46478873239437
	1525	# 1 40 4.999999999999995 51.97183098591550
	1526	# typeset iStation iProc list_opt file_in file_out prefix_invert
	1527	# typeset -Z4 j4
	1528	# typeset -Z3 j3
	1529
	1530	# unset list_opt
	1531	# set +A list_opt $@
	1532
	1533	# Filename after rebuild
	1534	# file_out=${list_opt[0]}
	1535	# Prefix of output files
	1536	# prefix_invert=$( basename ${file_out} .nc )
	1537	# Number of procs
	1538	# num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} \| wc -l )
	1539
	1540	# iProc=0
	1541	# while [ ${iProc} -lt ${num_proc} ] ; do
	1542	# Array containing Station as a number
	1543	# unset proc_stn
	1544	# set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} \| sed -e "s/iophy_mpi rank ip lon lat //g" \| awk ' {print $2}' )
	1545	# Number of stations produced by processor proc
	1546	# stationLast=${#proc_stn[*]}
	1547	# Proc number on 4 digits
	1548	# j4=${iProc}
	1549	# Init
	1550	# iStation=0
	1551	# while [ ${iStation} -lt ${stationLast} ] ; do
	1552	# Station number on 3 digits
	1553	# j3=${proc_stn[${iStation}]}
	1554	# Extract station
[800]	1555	# Invert Axis : t,x -> x,t
[697]	1556	# t,pres,x -> x,t,pres
	1557	# So that we can concatenate along x
	1558	# IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
	1559	# (( iStation = iStation + 1 ))
	1560	# done
	1561	# (( iProc = iProc + 1 ))
	1562	# done
	1563
	1564	# Concatenate all station along x
	1565	# IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
	1566
	1567	# Re-invert file
	1568	# IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
	1569
	1570	# END reordering
	1571
	1572	IGCM_debug_PopStack "IGCM_sys_rebuild_station"
	1573	}
	1574
[657]	1575	############################################################
	1576	# Activate Running Environnment Variables
[536]	1577
[811]	1578	#D-#==================================================
	1579	#D-function IGCM_sys_desactiv_variables
	1580	#D-* Purpose: set environement variables prior to execution
	1581	#D-* Examples:
	1582	#D-
[657]	1583	function IGCM_sys_activ_variables {
	1584	IGCM_debug_PushStack "IGCM_sys_activ_variables"
	1585	if ( $DEBUG_sys ) ; then
	1586	echo "IGCM_sys_activ_variables"
	1587	fi
[811]	1588
	1589	# --------------------------------------------------------------------
	1590	#D- MPI specifications
	1591	# --------------------------------------------------------------------
	1592
	1593	# --------------------------------------------------------------------
	1594	#D- Other specifications
	1595	# --------------------------------------------------------------------
	1596
[657]	1597	IGCM_debug_PopStack "IGCM_sys_activ_variables"
[16]	1598	}
	1599
[657]	1600	############################################################
	1601	# Desactivate Running Environnment Variables
[16]	1602
[811]	1603	#D-#==================================================
	1604	#D-function IGCM_sys_desactiv_variables
	1605	#D-* Purpose: unset environement variables after execution
	1606	#D-* Examples:
	1607	#D-
[657]	1608	function IGCM_sys_desactiv_variables {
	1609	IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
	1610	if ( $DEBUG_sys ) ; then
	1611	echo "IGCM_sys_desactiv_variables"
	1612	fi
[811]	1613	# --------------------------------------------------------------------
	1614	#D- MPI specifications
	1615	# --------------------------------------------------------------------
	1616
	1617	# --------------------------------------------------------------------
	1618	#D- Other specifications
	1619	# --------------------------------------------------------------------
	1620
[657]	1621	IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
	1622	}
	1623
	1624	############################################################
[800]	1625	# Build MPI/OMP scripts run file (dummy function)
[657]	1626
[811]	1627	#D-#==================================================
	1628	#D-function IGCM_sys_build_run_file
	1629	#D-* Purpose: build run file (deprecated)
	1630	#D-* Examples:
	1631	#D-
[657]	1632	function IGCM_sys_build_run_file {
	1633
[664]	1634	IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
[657]	1635
	1636	}
	1637
	1638	############################################################
	1639	# Build MPI/OMP scripts
[811]	1640
	1641	#D-#==================================================
	1642	#D-function IGCM_sys_build_execution_scripts
	1643	#D-* Purpose: build execution scripts to be launch by ${HOST_MPIRUN_COMMAND}
	1644	#D-* Examples:
	1645	#D-
[657]	1646	function IGCM_sys_build_execution_scripts
	1647	{
	1648	IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
	1649	if ( $DEBUG_sys ) ; then
	1650	echo "IGCM_sys_build_execution_scripts " $@
	1651	fi
	1652	typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut
	1653	typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc
	1654	typeset num_corempi nombre_restant_node nombre_restant_comp
	1655
	1656	if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then
[811]	1657	IGCM_debug_Exit "IGCM_sys_obelix build_execution_scripts : Job_${config_UserChoices_JobName} don't exist in SUBMIT_DIR : ${SUBMIT_DIR} "
[657]	1658	fi
	1659
	1660	if ( ${OK_PARA_MPMD} ) ; then
	1661
	1662	if [ -f run_file ] ; then
	1663	IGCM_sys_Rm -f run_file
[16]	1664	fi
[657]	1665	touch run_file
	1666
	1667	if ( ${OK_PARA_OMP} ) ; then
	1668
	1669	# Hosts treatment
	1670
	1671	${HOST_MPIRUN_COMMAND} hostname \| sort \| uniq > hosts.tmp
	1672
	1673	i=0
	1674	rm -f hosts
	1675	IGCM_debug_Print 1 "sys Obelix, Hosts avaible :"
	1676	for nodes in `cat hosts.tmp` ; do
	1677	host[$i]=$nodes
	1678	echo "${host[$i]} slots=1 max_slots=1" >> hosts
	1679	IGCM_debug_Print 1 ${host[$i]}
	1680	i=$((i+1))
	1681	done
	1682	rm -f hosts.tmp
	1683
	1684	listnodes=${host[*]}
	1685
	1686	EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts"
	1687
	1688	# Initialisation
	1689
	1690	init_node=y
	1691	node_num_current=0
	1692	start_num=0
	1693	init_exec=n
	1694
	1695	# Test : if oasis is there, we put it at the first position
	1696
	1697	for comp in ${config_ListOfComponents[*]} ; do
	1698
	1699	if [ "X${comp}" = "XCPL" ] ; then
	1700
	1701	eval ExeNameIn=\${config_Executable_${comp}[0]}
	1702	eval ExeNameOut=\${config_Executable_${comp}[1]}
	1703
	1704	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
	1705	echo "" >> script_${ExeNameOut}.ksh
	1706	#echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
	1707	#echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
	1708	#echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
	1709	echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
	1710	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
	1711
	1712	init_node=n
	1713
	1714	(( nombre_restant_node = NUM_COREPERNODE - 1 ))
	1715	node_num_current=0
	1716	node_current=${host[${node_num_current}]}
	1717
	1718	EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh"
	1719
	1720	init_exec=y
	1721	start_num=1
	1722
	1723	fi
	1724
	1725	done
	1726
	1727	# Then loop on the components (except for oasis)
	1728
	1729	for comp in ${config_ListOfComponents[*]} ; do
	1730
	1731	eval ExeNameIn=\${config_Executable_${comp}[0]}
	1732	eval ExeNameOut=\${config_Executable_${comp}[1]}
	1733
	1734	# Only if we really have an executable for the component :
	1735	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
	1736
	1737	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
	1738	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
	1739
	1740	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
	1741	# echo "set -vx" >> script_${ExeNameOut}.ksh
	1742	echo "" >> script_${ExeNameOut}.ksh
	1743	#echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh
	1744	#echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh
	1745	#echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh
	1746	echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
	1747	echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh
	1748	echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh
	1749	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
	1750
	1751	node_num=0
	1752
	1753	# We define the number of MPI process to be assigned for the component
	1754
	1755	nombre_restant_comp=${comp_proc_mpi_loc}
	1756
	1757	# Loop on the allocated nodes
	1758
	1759	for node in ${listnodes} ; do
	1760
	1761	# We go to the current node
	1762	if [ ${node_num} = ${node_num_current} ] ; then
	1763
	1764	node_current=${host[${node_num_current}]}
	1765
	1766	# If first time on the node : initialisation
	1767
	1768	if [ ${init_node} = y ] ; then
	1769	nombre_restant_node=${NUM_COREPERNODE}
	1770	fi
	1771
	1772	# Test on the number of OMP threads
	1773
	1774	if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then
	1775	(( node_num = node_num + 1 ))
	1776	node_num_current=${node_num}
	1777	init_node=y
	1778	continue
	1779	fi
	1780
	1781	# Number of MPI process to assign
	1782
	1783	(( num_corempi = nombre_restant_node / comp_proc_omp_loc ))
	1784
	1785	if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then
	1786	num_corempi=${nombre_restant_comp}
	1787	fi
	1788
	1789	(( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc ))
	1790	(( nombre_restant_comp = nombre_restant_comp - num_corempi ))
	1791
	1792	if [ ${init_exec} = y ] ; then
	1793	EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
	1794	else
	1795	EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh"
	1796	init_exec=y
	1797	fi
	1798
	1799	(( start_num = num_corempi + start_num ))
	1800
	1801	else
	1802
	1803	(( node_num = node_num + 1 ))
	1804	continue
	1805	fi
	1806
	1807	# Test on the number of core/process remaining on the node/component
	1808
	1809	if [ ${nombre_restant_node} = 0 ] ; then
	1810	(( node_num = node_num + 1 ))
	1811	node_num_current=${node_num}
	1812	init_node=y
	1813
	1814	if [ ${nombre_restant_comp} = 0 ] ; then
	1815	break 1
	1816	fi
	1817	else
	1818
	1819	node_num_current=${node_num}
	1820	init_node=n
	1821
	1822	if [ ${nombre_restant_comp} = 0 ] ; then
	1823	break 1
	1824	fi
	1825	fi
	1826	done
	1827	fi
	1828	done
	1829
	1830	else
	1831
[664]	1832	# Then first loop on the components for the coupler ie oasis
[657]	1833
[664]	1834	## the coupler ie oasis must be the first one
	1835	for comp in ${config_ListOfComponents[*]} ; do
[657]	1836
[664]	1837	eval ExeNameOut=\${config_Executable_${comp}[1]}
[657]	1838
	1839	# for CPL component only
[664]	1840	if [ "X${comp}" = "XCPL" ] ; then
	1841	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
	1842	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file
	1843	fi
	1844	done
[657]	1845
[811]	1846	# Then second loop on the components
[657]	1847
[664]	1848	for comp in ${config_ListOfComponents[*]} ; do
[657]	1849
[664]	1850	eval ExeNameOut=\${config_Executable_${comp}[1]}
[657]	1851
[664]	1852	# Only if we really have an executable for the component and not the coupler ie oasis:
	1853	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
	1854	eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
	1855	echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
	1856	fi
	1857	done
	1858	IGCM_sys_Chmod u+x run_file
[657]	1859
[664]	1860	EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file"
[657]	1861
[16]	1862	fi
	1863
[657]	1864	else # Only one executable. launch it.
	1865
[664]	1866	for comp in ${config_ListOfComponents[*]} ; do
[657]	1867
[664]	1868	# Only if we really have an executable for the component :
	1869	eval ExeNameOut=\${config_Executable_${comp}[1]}
	1870	if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
[657]	1871
[664]	1872	echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
	1873	echo "" >> script_${ExeNameOut}.ksh
	1874	if ( ${OK_PARA_OMP} ) ; then
	1875	eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
	1876	echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
	1877	fi
	1878	if ( ${OK_PARA_MPI} ) ; then
	1879	# Default : mpirun used if nb_proc gt 1
	1880	# pour sortie out/err par process
	1881	# echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh
	1882	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
	1883	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
	1884	EXECUTION="${HOST_MPIRUN_COMMAND} ./script_${ExeNameOut}.ksh"
	1885	else
	1886	# Default : mpirun is NOT used if nb_proc eq 1
	1887	# pour sortie out/err par process
	1888	# echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
	1889	echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
	1890	IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
	1891	EXECUTION="time ./script_${ExeNameOut}.ksh"
	1892	fi
	1893	fi
	1894	done
[657]	1895
	1896	fi
	1897
[811]	1898	IGCM_debug_Print 1 "sys Obelix : execution command is"
	1899	IGCM_debug_Print 1 "$EXECUTION"
[657]	1900
	1901	IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
[16]	1902	}
	1903
[657]	1904	############################################################
[811]	1905	# Check of space available on temporary filesytems. Dummy function here
	1906
	1907	#D-#==================================================
	1908	#D-function IGCM_sys_check_quota. Dummy call here
	1909	#D-* Purpose: check user quota. Stop the simulation if quota above 90%
	1910	#D-* Examples:
	1911	#D-
[657]	1912	function IGCM_sys_check_quota {
	1913	IGCM_debug_PushStack "IGCM_sys_check_quota"
	1914	if ( $DEBUG_sys ) ; then
	1915	echo "IGCM_sys_check_quota"
	1916	fi
	1917	IGCM_debug_PopStack "IGCM_sys_check_quota"
	1918	}
	1919
[811]	1920	#D-#==================================================
	1921	#D-function IGCM_sys_CountJobInQueue
	1922	#D-* Purpose: Check if job_name is currently
	1923	#D- running or in queue
	1924	#D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun
	1925	#D-
	1926	function IGCM_sys_CountJobInQueue {
	1927	IGCM_debug_PushStack "IGCM_sys_CountJobInQueue"
	1928	if ( $DEBUG_sys ) ; then
	1929	echo "IGCM_sys_CountJobInQueue"
	1930	fi
	1931	IGCM_debug_PopStack "IGCM_sys_CountJobInQueue"
	1932	}
	1933
[16]	1934	##############################################################
	1935	# NCO OPERATOR
	1936
[811]	1937	#D-#==================================================
	1938	#D-function IGCM_sys_ncap2
	1939	#D-* Purpose: encapsulate ncap2 call so as to manage error code and retry
	1940	#D-* Examples:
	1941	#D-
[377]	1942	function IGCM_sys_ncap2 {
[657]	1943	IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
	1944	if ( $DEBUG_sys ) ; then
	1945	echo "IGCM_sys_ncap2 :" $@
	1946	fi
[714]	1947
	1948	typeset NB_ESSAI DELAI status i
	1949	# number of tentative
	1950	NB_ESSAI=3
	1951	# time delay between tentative
	1952	DELAI=2
	1953
	1954	i=0
	1955	while [ $i -lt $NB_ESSAI ] ; do
	1956	ncap2 "$@" > out_rsync 2>&1
	1957	status=$?
	1958	if [ ${status} -gt 0 ] ; then
	1959	IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
	1960	cat out_rsync
	1961	\rm out_rsync
	1962	IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	1963	sleep $DELAI
[714]	1964	else
	1965	\rm out_rsync
	1966	break
	1967	fi
	1968	(( i = i + 1 ))
	1969	done
	1970
	1971	if [ ${status} -gt 0 ] ; then
[811]	1972	echo "IGCM_sys_ncap2 : ncap2 error"
	1973	IGCM_debug_Exit "ncap2"
[657]	1974	fi
[16]	1975
[657]	1976	IGCM_debug_PopStack "IGCM_sys_ncap2"
[16]	1977	}
	1978
[811]	1979	#D-#==================================================
	1980	#D-function IGCM_sys_ncatted
	1981	#D-* Purpose: encapsulate ncatted call so as to manage error code and retry
	1982	#D-* Examples:
	1983	#D-
[375]	1984	function IGCM_sys_ncatted {
[657]	1985	IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
	1986	if ( $DEBUG_sys ) ; then
	1987	echo "IGCM_sys_ncatted :" $@
	1988	fi
[714]	1989
	1990	typeset NB_ESSAI DELAI status i
	1991	# number of tentative
	1992	NB_ESSAI=3
	1993	# time delay between tentative
	1994	DELAI=2
	1995
	1996	i=0
	1997	while [ $i -lt $NB_ESSAI ] ; do
	1998	ncatted "$@" > out_rsync 2>&1
	1999	status=$?
	2000	if [ ${status} -gt 0 ] ; then
	2001	IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
	2002	cat out_rsync
	2003	\rm out_rsync
	2004	IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2005	sleep $DELAI
[714]	2006	else
	2007	\rm out_rsync
	2008	break
	2009	fi
	2010	(( i = i + 1 ))
	2011	done
	2012
	2013	if [ ${status} -gt 0 ] ; then
[811]	2014	echo "IGCM_sys_ncatted : ncatted error"
	2015	IGCM_debug_Exit "ncatted"
[657]	2016	fi
[16]	2017
[657]	2018	IGCM_debug_PopStack "IGCM_sys_ncatted"
[375]	2019	}
[16]	2020
[811]	2021	#D-#==================================================
	2022	#D-function IGCM_sys_ncbo
	2023	#D-* Purpose: encapsulate ncbo call so as to manage error code and retry
	2024	#D-* Examples:
	2025	#D-
[16]	2026	function IGCM_sys_ncbo {
[657]	2027	IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
	2028	if ( $DEBUG_sys ) ; then
	2029	echo "IGCM_sys_ncbo :" $@
	2030	fi
[714]	2031
	2032	typeset NB_ESSAI DELAI status i
	2033	# number of tentative
	2034	NB_ESSAI=3
	2035	# time delay between tentative
	2036	DELAI=2
	2037
	2038	i=0
	2039	while [ $i -lt $NB_ESSAI ] ; do
	2040	ncbo $@ > out_rsync 2>&1
	2041	status=$?
	2042	if [ ${status} -gt 0 ] ; then
	2043	IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
	2044	cat out_rsync
	2045	\rm out_rsync
	2046	IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2047	sleep $DELAI
[714]	2048	else
	2049	\rm out_rsync
	2050	break
	2051	fi
	2052	(( i = i + 1 ))
	2053	done
	2054
	2055	if [ ${status} -gt 0 ] ; then
[811]	2056	echo "IGCM_sys_ncbo : ncbo error"
	2057	IGCM_debug_Exit "ncbo"
[657]	2058	fi
[16]	2059
[657]	2060	IGCM_debug_PopStack "IGCM_sys_ncbo"
[16]	2061	}
	2062
[811]	2063	#D-#==================================================
	2064	#D-function IGCM_sys_ncdif
	2065	#D-* Purpose: encapsulate ncdiff call so as to manage error code and retry
	2066	#D-* Examples:
	2067	#D-
[16]	2068	function IGCM_sys_ncdiff {
[657]	2069	IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
	2070	if ( $DEBUG_sys ) ; then
	2071	echo "IGCM_sys_ncdiff :" $@
	2072	fi
[714]	2073
	2074	typeset NB_ESSAI DELAI status i
	2075	# number of tentative
	2076	NB_ESSAI=3
	2077	# time delay between tentative
	2078	DELAI=2
	2079
	2080	i=0
	2081	while [ $i -lt $NB_ESSAI ] ; do
	2082	ncdiff $@ > out_rsync 2>&1
	2083	status=$?
	2084	if [ ${status} -gt 0 ] ; then
	2085	IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
	2086	cat out_rsync
	2087	\rm out_rsync
	2088	IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2089	sleep $DELAI
[714]	2090	else
	2091	\rm out_rsync
	2092	break
	2093	fi
	2094	(( i = i + 1 ))
	2095	done
	2096
	2097	if [ ${status} -gt 0 ] ; then
[811]	2098	echo "IGCM_sys_ncdiff : ncdiff error"
	2099	IGCM_debug_Exit "ncdiff"
[657]	2100	fi
[16]	2101
[657]	2102	IGCM_debug_PopStack "IGCM_sys_ncdiff"
[16]	2103	}
	2104
[811]	2105	#D-#==================================================
	2106	#D-function IGCM_sys_ncea
	2107	#D-* Purpose: encapsulate ncea call so as to manage error code and retry
	2108	#D-* Examples:
	2109	#D-
[16]	2110	function IGCM_sys_ncea {
[657]	2111	IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
	2112	if ( $DEBUG_sys ) ; then
	2113	echo "IGCM_sys_ncea :" $@
	2114	fi
[714]	2115
	2116	typeset NB_ESSAI DELAI status i
	2117	# number of tentative
	2118	NB_ESSAI=3
	2119	# time delay between tentative
	2120	DELAI=2
	2121
	2122	i=0
	2123	while [ $i -lt $NB_ESSAI ] ; do
	2124	ncea $@ > out_rsync 2>&1
	2125	status=$?
	2126	if [ ${status} -gt 0 ] ; then
	2127	IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
	2128	cat out_rsync
	2129	\rm out_rsync
	2130	IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2131	sleep $DELAI
[714]	2132	else
	2133	\rm out_rsync
	2134	break
	2135	fi
	2136	(( i = i + 1 ))
	2137	done
	2138
	2139	if [ ${status} -gt 0 ] ; then
[811]	2140	echo "IGCM_sys_ncea : ncea error"
	2141	IGCM_debug_Exit "ncea"
[657]	2142	fi
[16]	2143
[657]	2144	IGCM_debug_PopStack "IGCM_sys_ncea"
[16]	2145	}
	2146
[811]	2147	#D-#==================================================
	2148	#D-function IGCM_sys_ncecat
	2149	#D-* Purpose: encapsulate ncecat call so as to manage error code and retry
	2150	#D-* Examples:
	2151	#D-
[16]	2152	function IGCM_sys_ncecat {
[657]	2153	IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
	2154	if ( $DEBUG_sys ) ; then
	2155	echo "IGCM_sys_ncecat :" $@
	2156	fi
[714]	2157
	2158	typeset NB_ESSAI DELAI status i
	2159	# number of tentative
	2160	NB_ESSAI=3
	2161	# time delay between tentative
	2162	DELAI=2
	2163
	2164	i=0
	2165	while [ $i -lt $NB_ESSAI ] ; do
	2166	ncecat $@ > out_rsync 2>&1
	2167	status=$?
	2168	if [ ${status} -gt 0 ] ; then
	2169	IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
	2170	cat out_rsync
	2171	\rm out_rsync
	2172	IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2173	sleep $DELAI
[714]	2174	else
	2175	\rm out_rsync
	2176	break
	2177	fi
	2178	(( i = i + 1 ))
	2179	done
	2180
	2181	if [ ${status} -gt 0 ] ; then
[811]	2182	echo "IGCM_sys_ncecat : ncecat error"
	2183	IGCM_debug_Exit "ncecat"
[657]	2184	fi
[16]	2185
[657]	2186	IGCM_debug_PopStack "IGCM_sys_ncecat"
[16]	2187	}
	2188
[811]	2189	#D-#==================================================
	2190	#D-function IGCM_sys_ncflint
	2191	#D-* Purpose: encapsulate ncflint call so as to manage error code and retry
	2192	#D-* Examples:
	2193	#D-
[16]	2194	function IGCM_sys_ncflint {
[657]	2195	IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
	2196	if ( $DEBUG_sys ) ; then
	2197	echo "IGCM_sys_ncflint :" $@
	2198	fi
[714]	2199
	2200	typeset NB_ESSAI DELAI status i
	2201	# number of tentative
	2202	NB_ESSAI=3
	2203	# time delay between tentative
	2204	DELAI=2
	2205
	2206	i=0
	2207	while [ $i -lt $NB_ESSAI ] ; do
	2208	ncflint $@ > out_rsync 2>&1
	2209	status=$?
	2210	if [ ${status} -gt 0 ] ; then
	2211	IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
	2212	cat out_rsync
	2213	\rm out_rsync
	2214	IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2215	sleep $DELAI
[714]	2216	else
	2217	\rm out_rsync
	2218	break
	2219	fi
	2220	(( i = i + 1 ))
	2221	done
	2222
	2223	if [ ${status} -gt 0 ] ; then
[811]	2224	echo "IGCM_sys_ncflint : ncflint error"
	2225	IGCM_debug_Exit "ncflint"
[657]	2226	fi
[16]	2227
[657]	2228	IGCM_debug_PopStack "IGCM_sys_ncflint"
[16]	2229	}
	2230
[811]	2231	#D-#==================================================
	2232	#D-function IGCM_sys_ncks
	2233	#D-* Purpose: encapsulate ncks call so as to manage error code and retry
	2234	#D-* Examples:
	2235	#D-
[16]	2236	function IGCM_sys_ncks {
[657]	2237	IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
	2238	if ( $DEBUG_sys ) ; then
	2239	echo "IGCM_sys_ncks :" $@
	2240	fi
[714]	2241
	2242	typeset NB_ESSAI DELAI status i
	2243	# number of tentative
	2244	NB_ESSAI=3
	2245	# time delay between tentative
	2246	DELAI=2
	2247
	2248	i=0
	2249	while [ $i -lt $NB_ESSAI ] ; do
	2250	ncks $@ > out_rsync 2>&1
	2251	status=$?
	2252	if [ ${status} -gt 0 ] ; then
	2253	IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
	2254	cat out_rsync
	2255	\rm out_rsync
	2256	IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2257	sleep $DELAI
[714]	2258	else
	2259	\rm out_rsync
	2260	break
	2261	fi
	2262	(( i = i + 1 ))
	2263	done
	2264
	2265	if [ ${status} -gt 0 ] ; then
[811]	2266	echo "IGCM_sys_ncks : ncks error"
	2267	IGCM_debug_Exit "ncks"
[657]	2268	fi
[16]	2269
[657]	2270	IGCM_debug_PopStack "IGCM_sys_ncks"
[16]	2271	}
	2272
[811]	2273	#D-#==================================================
	2274	#D-function IGCM_sys_ncpdq
	2275	#D-* Purpose: encapsulate ncpdq call so as to manage error code and retry
	2276	#D-* Examples:
	2277	#D-
[16]	2278	function IGCM_sys_ncpdq {
[657]	2279	IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
	2280	if ( $DEBUG_sys ) ; then
	2281	echo "IGCM_sys_ncpdq :" $@
	2282	fi
[714]	2283
	2284	typeset NB_ESSAI DELAI status i
	2285	# number of tentative
	2286	NB_ESSAI=3
	2287	# time delay between tentative
	2288	DELAI=2
	2289
	2290	i=0
	2291	while [ $i -lt $NB_ESSAI ] ; do
	2292	ncpdq $@ > out_rsync 2>&1
	2293	status=$?
	2294	if [ ${status} -gt 0 ] ; then
	2295	IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
	2296	cat out_rsync
	2297	\rm out_rsync
	2298	IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2299	sleep $DELAI
[714]	2300	else
	2301	\rm out_rsync
	2302	break
	2303	fi
	2304	(( i = i + 1 ))
	2305	done
	2306
	2307	if [ ${status} -gt 0 ] ; then
[811]	2308	echo "IGCM_sys_ncpdq : ncpdq error"
	2309	IGCM_debug_Exit "ncpdq"
[657]	2310	fi
[16]	2311
[657]	2312	IGCM_debug_PopStack "IGCM_sys_ncpdq"
[16]	2313	}
	2314
[811]	2315	#D-#==================================================
	2316	#D-function IGCM_sys_ncra
	2317	#D-* Purpose: encapsulate ncra call so as to manage error code and retry
	2318	#D-* Examples:
	2319	#D-
[16]	2320	function IGCM_sys_ncra {
[657]	2321	IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
	2322	if ( $DEBUG_sys ) ; then
	2323	echo "IGCM_sys_ncra :" $@
	2324	fi
[714]	2325
	2326	typeset NB_ESSAI DELAI status i
	2327	# number of tentative
	2328	NB_ESSAI=3
	2329	# time delay between tentative
	2330	DELAI=2
	2331
	2332	i=0
	2333	while [ $i -lt $NB_ESSAI ] ; do
	2334	ncra $@ > out_rsync 2>&1
	2335	status=$?
	2336	if [ ${status} -gt 0 ] ; then
	2337	IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
	2338	cat out_rsync
	2339	\rm out_rsync
	2340	IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2341	sleep $DELAI
[714]	2342	else
	2343	\rm out_rsync
	2344	break
	2345	fi
	2346	(( i = i + 1 ))
	2347	done
	2348
	2349	if [ ${status} -gt 0 ] ; then
[811]	2350	echo "IGCM_sys_ncra : ncra error"
	2351	IGCM_debug_Exit "ncra"
[657]	2352	fi
[16]	2353
[657]	2354	IGCM_debug_PopStack "IGCM_sys_ncra"
[16]	2355	}
	2356
[811]	2357	#D-#==================================================
	2358	#D-function IGCM_sys_ncrcat
	2359	#D-* Purpose: encapsulate ncrcat call so as to manage error code and retry
	2360	#D-* Examples:
	2361	#D-
[16]	2362	function IGCM_sys_ncrcat {
[657]	2363	IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
	2364	if ( $DEBUG_sys ) ; then
	2365	echo "IGCM_sys_ncrcat :" $@
	2366	fi
[714]	2367
[811]	2368	typeset NB_ESSAI DELAI status i lastArg
[714]	2369	# number of tentative
	2370	NB_ESSAI=3
	2371	# time delay between tentative
	2372	DELAI=2
	2373
	2374	i=0
	2375	while [ $i -lt $NB_ESSAI ] ; do
	2376	ncrcat $@ > out_rsync 2>&1
	2377	status=$?
	2378	if [ ${status} -gt 0 ] ; then
	2379	IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
	2380	cat out_rsync
	2381	\rm out_rsync
	2382	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2383	sleep $DELAI
[811]	2384	elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then
	2385	IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity"
	2386	cat out_rsync
	2387	# remove files having corrupted time axis
	2388	eval lastArg=\${$#}
	2389	IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}"
	2390	\rm ${lastArg}
	2391	\rm out_rsync
	2392	IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
	2393	sleep $DELAI
[714]	2394	else
	2395	\rm out_rsync
	2396	break
	2397	fi
	2398	(( i = i + 1 ))
	2399	done
	2400
	2401	if [ ${status} -gt 0 ] ; then
[811]	2402	echo "IGCM_sys_ncrcat : ncrcat error"
	2403	#IGCM_debug_Exit "ncrcat"
[657]	2404	fi
[16]	2405
[657]	2406	IGCM_debug_PopStack "IGCM_sys_ncrcat"
[16]	2407	}
	2408
[811]	2409	#D-#==================================================
	2410	#D-function IGCM_sys_ncrename
	2411	#D-* Purpose: encapsulate ncrename call so as to manage error code and retry
	2412	#D-* Examples:
	2413	#D-
[16]	2414	function IGCM_sys_ncrename {
[657]	2415	IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
	2416	if ( $DEBUG_sys ) ; then
	2417	echo "IGCM_sys_ncrename :" $@
	2418	fi
[714]	2419
	2420	typeset NB_ESSAI DELAI status i
	2421	# number of tentative
	2422	NB_ESSAI=3
	2423	# time delay between tentative
	2424	DELAI=2
	2425
	2426	i=0
	2427	while [ $i -lt $NB_ESSAI ] ; do
	2428	ncrename $@ > out_rsync 2>&1
	2429	status=$?
	2430	if [ ${status} -gt 0 ] ; then
	2431	IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
	2432	cat out_rsync
	2433	\rm out_rsync
	2434	IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2435	sleep $DELAI
[714]	2436	else
	2437	\rm out_rsync
	2438	break
	2439	fi
	2440	(( i = i + 1 ))
	2441	done
	2442
	2443	if [ ${status} -gt 0 ] ; then
[811]	2444	echo "IGCM_sys_ncrename : ncrename error"
	2445	IGCM_debug_Exit "ncrename"
[657]	2446	fi
[16]	2447
[657]	2448	IGCM_debug_PopStack "IGCM_sys_ncrename"
[16]	2449	}
	2450
[811]	2451	#D-#==================================================
	2452	#D-function IGCM_sys_ncwa
	2453	#D-* Purpose: encapsulate ncwa call so as to manage error code and retry
	2454	#D-* Examples:
	2455	#D-
[16]	2456	function IGCM_sys_ncwa {
[657]	2457	IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
	2458	if ( $DEBUG_sys ) ; then
	2459	echo "IGCM_sys_ncwa :" $@
	2460	fi
[714]	2461
	2462	typeset NB_ESSAI DELAI status i
	2463	# number of tentative
	2464	NB_ESSAI=3
	2465	# time delay between tentative
	2466	DELAI=2
	2467
	2468	i=0
	2469	while [ $i -lt $NB_ESSAI ] ; do
	2470	ncwa $@ > out_rsync 2>&1
	2471	status=$?
	2472	if [ ${status} -gt 0 ] ; then
	2473	IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
	2474	cat out_rsync
	2475	\rm out_rsync
	2476	IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
[800]	2477	sleep $DELAI
[714]	2478	else
	2479	\rm out_rsync
	2480	break
	2481	fi
	2482	(( i = i + 1 ))
	2483	done
	2484
	2485	if [ ${status} -gt 0 ] ; then
[811]	2486	echo "IGCM_sys_ncwa : ncwa error"
	2487	IGCM_debug_Exit "ncwa"
[657]	2488	fi
[16]	2489
[657]	2490	IGCM_debug_PopStack "IGCM_sys_ncwa"
[16]	2491	}
	2492
[284]	2493	##############################################################
	2494	# CDO OPERATOR
	2495
[811]	2496	#D-#==================================================
	2497	#D-function IGCM_sys_cdo
	2498	#D-* Purpose: encapsulate cdo call so as to manage error code and retry
	2499	#D-* Examples:
	2500	#D-
[284]	2501	function IGCM_sys_cdo {
[657]	2502	IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
[714]	2503	if ( $DEBUG_sys ) ; then
	2504	echo "IGCM_sys_cdo :" $@
	2505	fi
[284]	2506
[714]	2507	typeset status
	2508
	2509	\cdo $@ > out_rsync 2>&1
	2510	status=$?
	2511	if [ ${status} -gt 0 ] ; then
	2512	echo "IGCM_sys_cdo : error code ${status}"
	2513	cat out_rsync
	2514	\rm out_rsync
[284]	2515	IGCM_debug_PopStack "IGCM_sys_cdo"
[657]	2516	return 1
	2517	else
	2518	IGCM_debug_PopStack "IGCM_sys_cdo"
	2519	return 0
	2520	fi
[284]	2521
[657]	2522	IGCM_debug_PopStack "IGCM_sys_cdo"
[16]	2523	}

Note: See TracBrowser for help on using the repository browser.

Download in other formats: