[657] | 1 | #!/bin/ksh |
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[16] | 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip, Christian Laguerre |
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[373] | 5 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[16] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[657] | 11 | # |
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[16] | 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[657] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[16] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for obelix |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[657] | 24 | #D- This ksh library if a layer under some usefull |
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[16] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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[343] | 34 | #==================================================== |
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[16] | 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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[343] | 38 | #==================================================== |
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[16] | 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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| 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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[809] | 45 | # | | Cp/Exe/param/files | | | | |
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| 46 | # | | Chmod Qsub | | | | |
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[16] | 47 | # ------------------------------------------------------------------------------------- |
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| 48 | # | 0 | yes | yes | yes | yes | |
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| 49 | # ------------------------------------------------------------------------------------- |
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| 50 | # | 1 | yes | yes | yes | no | |
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| 51 | # ------------------------------------------------------------------------------------- |
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| 52 | # | 2 | yes | yes | no | no | |
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| 53 | # ------------------------------------------------------------------------------------- |
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| 54 | # | 3 | yes | no | no | no | |
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| 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[657] | 64 | # Host and user names |
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[217] | 65 | # $hostname ou hostname |
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[800] | 66 | typeset HOST=${HOST:=$( hostname )} |
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[16] | 67 | # $username ou whoami |
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[800] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[657] | 69 | # $hostname of the MASTER job |
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[742] | 70 | typeset MASTER=${MASTER:=$( hostname )} |
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[16] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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[742] | 77 | # Submit command |
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| 78 | typeset SUBMIT=${SUBMIT:=qsub} |
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[16] | 79 | # rsync with path |
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| 80 | typeset -r RSYNC=/usr/bin/rsync |
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| 81 | # RSYNC_opt args to rsync |
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[282] | 82 | typeset -r RSYNC_opt="-va" |
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[657] | 83 | # ie storage filesystem |
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| 84 | typeset -r STOREHOST=${MASTER} |
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[16] | 85 | |
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| 86 | #==================================================== |
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[305] | 87 | # Set environment tools (ferret, nco, cdo) |
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| 88 | #==================================================== |
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[16] | 89 | . /home/users/brock/.atlas_env_asterix_ksh |
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| 90 | |
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[343] | 91 | #==================================================== |
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[421] | 92 | # Set lf95 environment |
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| 93 | #==================================================== |
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| 94 | . /usr/local/install/lf6481/bash_laheyfort_setup |
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| 95 | |
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| 96 | #==================================================== |
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[16] | 97 | # Host specific DIRECTORIES |
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| 98 | #==================================================== |
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| 99 | |
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| 100 | #==================================================== |
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[657] | 101 | #- MirrorlibIGCM for frontend |
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| 102 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 103 | |
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| 104 | #==================================================== |
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| 105 | #- libIGCM_POST for frontend |
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| 106 | typeset -r libIGCM_POST=${libIGCM} |
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| 107 | |
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| 108 | #==================================================== |
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[16] | 109 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 110 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 111 | |
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| 112 | #==================================================== |
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| 113 | #- SUBMIT_DIR : submission dir |
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[256] | 114 | if [ X${PBS_O_WORKDIR} != X ] ; then |
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[657] | 115 | typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PBS_O_WORKDIR}} |
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[256] | 116 | else |
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[657] | 117 | typeset -r SUBMIT_DIR=${SUBMIT_DIR:=${PWD}} |
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[256] | 118 | fi |
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[657] | 119 | |
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[16] | 120 | #==================================================== |
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[725] | 121 | #- IN |
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| 122 | typeset -r R_IN=${R_IN:=/home/orchidee01/mmancip/IGCM} |
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| 123 | |
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| 124 | #==================================================== |
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[657] | 125 | #- ARCHIVE (dedicated to large files) |
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[800] | 126 | typeset ARCHIVE=${ARCHIVE:=/home/scratch01/${LOGIN}} |
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[16] | 127 | |
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[725] | 128 | #==================================================== |
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| 129 | #- STORAGE (dedicated to small/medium files) |
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[800] | 130 | typeset STORAGE=${ARCHIVE} |
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[282] | 131 | |
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| 132 | #==================================================== |
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[717] | 133 | #- R_OUT |
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[800] | 134 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[16] | 135 | |
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| 136 | #==================================================== |
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[657] | 137 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[800] | 138 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[657] | 139 | |
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| 140 | #==================================================== |
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| 141 | #- R_BUF (ONLY FOR double copy an scratch) |
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[800] | 142 | typeset -r R_BUF=${STORAGE}/IGCM_OUT |
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[657] | 143 | |
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| 144 | #==================================================== |
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[16] | 145 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[800] | 146 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=/scratch/$PBS_O_LOGNAME.$PBS_JOBID} |
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[16] | 147 | |
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| 148 | #==================================================== |
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| 149 | #- HOST_MPIRUN_COMMAND |
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| 150 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"} |
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| 151 | |
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[61] | 152 | #==================================================== |
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| 153 | #- Max number of arguments passed to nco operator or demigration command |
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| 154 | UNIX_MAX_LIMIT=360 |
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| 155 | |
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[657] | 156 | #==================================================== |
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| 157 | #- Number of core per node (max number of OpenMP task) |
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| 158 | NUM_COREPERNODE=1 |
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| 159 | |
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| 160 | #==================================================== |
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| 161 | #- Default number of MPI task for IPSL coupled model |
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| 162 | #- required for backward compatibility |
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| 163 | #- |
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| 164 | DEFAULT_NUM_PROC_OCE=1 |
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| 165 | DEFAULT_NUM_PROC_CPL=1 |
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| 166 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 167 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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| 168 | |
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[16] | 169 | #D-#================================================== |
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[725] | 170 | #D-function IGCM_sys_ChangeArchive |
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| 171 | #D-* Purpose: Just a dummy call on this machine |
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| 172 | #D-* Examples: |
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| 173 | #D- |
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| 174 | function IGCM_sys_ChangeArchive { |
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| 175 | |
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| 176 | IGCM_debug_Print 1 " dummy function : IGCM_sys_ChangeArchive " |
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| 177 | |
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| 178 | } |
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| 179 | |
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| 180 | #D-#================================================== |
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[16] | 181 | #D-function IGCM_sys_RshMaster |
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[800] | 182 | #D-* Purpose: Connection to frontend machine. |
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[16] | 183 | #D-* Examples: |
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| 184 | #D- |
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| 185 | function IGCM_sys_RshMaster { |
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[657] | 186 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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[664] | 187 | ssh obelix3 /bin/ksh <<-EOF |
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[16] | 188 | export libIGCM=${libIGCM} |
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[98] | 189 | export DEBUG_debug=${DEBUG_debug} |
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[16] | 190 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 191 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 192 | ${@} |
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| 193 | EOF |
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[657] | 194 | if [ $? -gt 0 ] ; then |
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| 195 | echo "IGCM_sys_RshMaster : erreur." |
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| 196 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 197 | fi |
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| 198 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[16] | 199 | } |
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| 200 | |
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| 201 | #D-#================================================== |
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[37] | 202 | #D-function IGCM_sys_RshArchive |
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| 203 | #D-* Purpose: Archive rsh command |
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| 204 | #D-* Examples: |
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| 205 | #D- |
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| 206 | function IGCM_sys_RshArchive { |
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[657] | 207 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 208 | /bin/ksh <<-EOF |
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[40] | 209 | ${@} |
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| 210 | EOF |
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[657] | 211 | if [ $? -gt 0 ] ; then |
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| 212 | echo "IGCM_sys_RshArchive : erreur." |
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| 213 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 214 | fi |
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| 215 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[37] | 216 | } |
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| 217 | |
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| 218 | #D-#================================================== |
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[16] | 219 | #D-function IGCM_sys_RshPost |
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[282] | 220 | #D-* Purpose: Post-process rsh command |
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[16] | 221 | #D-* Examples: |
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| 222 | #D- |
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| 223 | function IGCM_sys_RshPost { |
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[657] | 224 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 225 | if ( $DEBUG_sys ) ; then |
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| 226 | echo "IGCM_sys_RshPost :" $@ |
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| 227 | fi |
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[800] | 228 | |
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| 229 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 230 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 231 | # keep standard input (stdin) for the loop onto temporary file |
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| 232 | cat >tmp_IGCM_sys_RshPost_$$ |
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| 233 | |
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| 234 | # ============ FRONTEND START ============ # |
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| 235 | |
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| 236 | ssh obelix3 exec /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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[657] | 237 | if [ $? -gt 0 ] ; then |
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| 238 | echo "IGCM_sys_RshPost : erreur." |
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| 239 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 240 | fi |
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[800] | 241 | # delete temporary file |
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| 242 | \rm tmp_IGCM_sys_RshPost_$$ |
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[657] | 243 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[16] | 244 | } |
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| 245 | |
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| 246 | #D-#================================================== |
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[153] | 247 | #D-function IGCM_sys_SendMail |
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| 248 | #D-* Purpose: Send mail when simulation is over |
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| 249 | #D-* Examples: |
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| 250 | #D- |
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| 251 | function IGCM_sys_SendMail { |
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[657] | 252 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 253 | if ( $DEBUG_sys ) ; then |
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| 254 | echo "IGCM_sys_SendMail :" $@ |
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| 255 | fi |
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[153] | 256 | |
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[657] | 257 | if ( ${ExitFlag} ) ; then |
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| 258 | status=failed |
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| 259 | else |
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| 260 | status=completed |
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| 261 | fi |
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[717] | 262 | |
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[657] | 263 | cat << END_MAIL > job_end.mail |
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[153] | 264 | Dear ${LOGIN}, |
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| 265 | |
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[664] | 266 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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| 267 | Job started : ${DateBegin} |
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| 268 | Job ended : ${DateEnd} |
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[437] | 269 | Output files are available in ${R_SAVE} |
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[800] | 270 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 271 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 272 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[437] | 273 | END_MAIL |
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| 274 | |
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[657] | 275 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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| 276 | mailx -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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| 277 | elif [ -f ~/.forward ] ; then |
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| 278 | mailx -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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| 279 | fi |
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[153] | 280 | |
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[657] | 281 | if [ $? -gt 0 ] ; then |
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| 282 | echo "IGCM_sys_SendMail : erreur." |
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| 283 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 284 | fi |
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| 285 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[153] | 286 | } |
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| 287 | |
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| 288 | #D-#================================================== |
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[16] | 289 | #D-function IGCM_sys_Mkdir |
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| 290 | #D-* Purpose: Master locale mkdir command |
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| 291 | #D-* Examples: |
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| 292 | #D- |
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| 293 | function IGCM_sys_Mkdir { |
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[657] | 294 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 295 | if ( $DEBUG_sys ) ; then |
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| 296 | echo "IGCM_sys_Mkdir :" $@ |
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| 297 | fi |
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| 298 | if [ ! -d ${1} ]; then |
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| 299 | \mkdir -p $1 |
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| 300 | if [ $? -gt 0 ] ; then |
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| 301 | echo "IGCM_sys_Mkdir : erreur." |
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| 302 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[16] | 303 | fi |
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[657] | 304 | fi |
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[717] | 305 | # vérification : |
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[657] | 306 | if [ ! -d ${1} ] ; then |
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| 307 | echo "IGCM_sys_Mkdir : erreur." |
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| 308 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 309 | fi |
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| 310 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[16] | 311 | } |
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| 312 | |
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| 313 | #D-#================================================== |
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| 314 | #D-function IGCM_sys_MkdirArchive |
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| 315 | #D-* Purpose: Mkdir on Archive |
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| 316 | #D-* Examples: |
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| 317 | #D- |
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| 318 | function IGCM_sys_MkdirArchive { |
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[657] | 319 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 320 | if ( $DEBUG_sys ) ; then |
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| 321 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 322 | fi |
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[717] | 323 | #- creation de repertoire sur le serveur fichier |
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[657] | 324 | if [ ! -d ${1} ]; then |
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| 325 | \mkdir -p $1 |
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| 326 | if [ $? -gt 0 ] ; then |
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| 327 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 328 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[16] | 329 | fi |
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[657] | 330 | fi |
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| 331 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
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[16] | 332 | } |
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| 333 | |
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| 334 | #D-#================================================== |
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| 335 | #D-function IGCM_sys_MkdirWork |
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| 336 | #D-* Purpose: Mkdir on Work |
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| 337 | #D-* Examples: |
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| 338 | #D- |
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| 339 | function IGCM_sys_MkdirWork { |
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[657] | 340 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
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| 341 | if ( $DEBUG_sys ) ; then |
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| 342 | echo "IGCM_sys_MkdirWork :" $@ |
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| 343 | fi |
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[717] | 344 | #- creation de repertoire sur le serveur fichier |
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[657] | 345 | if [ ! -d ${1} ]; then |
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| 346 | \mkdir -p $1 |
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| 347 | if [ $? -gt 0 ] ; then |
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| 348 | echo "IGCM_sys_MkdirWork : erreur." |
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| 349 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
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[16] | 350 | fi |
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[657] | 351 | fi |
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| 352 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
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[16] | 353 | } |
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| 354 | |
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| 355 | #D-#================================================== |
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| 356 | #D-function IGCM_sys_Cd |
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| 357 | #D-* Purpose: master cd command |
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| 358 | #D-* Examples: |
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| 359 | #D- |
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| 360 | function IGCM_sys_Cd { |
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[657] | 361 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
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| 362 | if ( $DEBUG_sys ) ; then |
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| 363 | echo "IGCM_sys_Cd :" $@ |
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| 364 | fi |
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| 365 | \cd $1 |
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| 366 | if [ $? -gt 0 ] ; then |
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| 367 | echo "IGCM_sys_Cd : erreur." |
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| 368 | IGCM_debug_Exit "IGCM_sys_Cd" |
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| 369 | fi |
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| 370 | IGCM_debug_PopStack "IGCM_sys_Cd" |
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[16] | 371 | } |
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| 372 | |
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| 373 | #D-#================================================== |
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| 374 | #D-function IGCM_sys_Chmod |
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| 375 | #D-* Purpose: Chmod |
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| 376 | #D-* Examples: |
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| 377 | #D- |
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| 378 | function IGCM_sys_Chmod { |
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[657] | 379 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
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| 380 | if ( $DEBUG_sys ) ; then |
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| 381 | echo "IGCM_sys_Chmod :" $@ |
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| 382 | fi |
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[809] | 383 | \chmod $@ |
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| 384 | if [ $? -gt 0 ] ; then |
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| 385 | echo "IGCM_sys_Chmod : erreur." |
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| 386 | IGCM_debug_Exit "IGCM_sys_Chmod" |
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[657] | 387 | fi |
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| 388 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
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[16] | 389 | } |
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| 390 | |
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| 391 | #D-#================================================== |
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| 392 | #D-function IGCM_sys_FileSize |
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| 393 | #D-* Purpose: Filesize |
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| 394 | #D-* Examples: |
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| 395 | #D- |
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| 396 | function IGCM_sys_FileSize { |
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[657] | 397 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
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[16] | 398 | |
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[657] | 399 | typeset sizeF |
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| 400 | set +A sizeF -- $( ls -la ${1} ) |
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| 401 | if [ $? -gt 0 ] ; then |
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| 402 | IGCM_debug_Exit "IGCM_sys_FileSize" |
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| 403 | fi |
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| 404 | eval ${2}=${sizeF[4]} |
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[16] | 405 | |
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[657] | 406 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
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[16] | 407 | } |
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| 408 | |
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| 409 | #D-#================================================== |
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| 410 | #D-function IGCM_sys_TestDir |
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| 411 | #D-* Purpose: Test Directory that must exists |
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| 412 | #D-* Examples: |
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| 413 | #D- |
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| 414 | function IGCM_sys_TestDir { |
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[657] | 415 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
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| 416 | if ( $DEBUG_sys ) ; then |
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| 417 | echo "IGCM_sys_TestDir :" $@ |
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| 418 | fi |
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| 419 | typeset ExistFlag |
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| 420 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 421 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
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[67] | 422 | |
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[657] | 423 | return ${ExistFlag} |
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[16] | 424 | } |
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| 425 | |
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| 426 | #D-#================================================== |
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| 427 | #D-function IGCM_sys_TestDirArchive |
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| 428 | #D-* Purpose: Test Directory that must exists on Archive |
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| 429 | #D-* Examples: |
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| 430 | #D- |
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| 431 | function IGCM_sys_TestDirArchive { |
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[657] | 432 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
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| 433 | if ( $DEBUG_sys ) ; then |
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| 434 | echo "IGCM_sys_TestDirArchive :" $@ |
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| 435 | fi |
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| 436 | typeset ExistFlag |
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| 437 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
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| 438 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
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[67] | 439 | |
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[657] | 440 | return ${ExistFlag} |
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[16] | 441 | } |
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| 442 | |
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| 443 | #D-#================================================== |
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[800] | 444 | #D-function IGCM_sys_IsFileArchived |
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| 445 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
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| 446 | #D-* Examples: |
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| 447 | #D- |
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| 448 | function IGCM_sys_IsFileArchived { |
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| 449 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 450 | if ( $DEBUG_sys ) ; then |
---|
| 451 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 452 | fi |
---|
| 453 | typeset IsArchivedFlag |
---|
| 454 | # Never archived for this system |
---|
| 455 | IsArchivedFlag=1 |
---|
| 456 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 457 | |
---|
| 458 | return ${IsArchivedFlag} |
---|
| 459 | } |
---|
| 460 | |
---|
| 461 | #D-#================================================== |
---|
[16] | 462 | #D-function IGCM_sys_TestFileArchive |
---|
| 463 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 464 | #D-* Examples: |
---|
| 465 | #D- |
---|
| 466 | function IGCM_sys_TestFileArchive { |
---|
[657] | 467 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 468 | typeset ExistFlag |
---|
| 469 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 470 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[67] | 471 | |
---|
[657] | 472 | return ${ExistFlag} |
---|
[67] | 473 | } |
---|
| 474 | |
---|
| 475 | #D-#================================================== |
---|
[657] | 476 | #D-function IGCM_sys_TestFileBuffer |
---|
| 477 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 478 | #D-* Examples: |
---|
| 479 | #D- |
---|
| 480 | function IGCM_sys_TestFileBuffer { |
---|
| 481 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 482 | typeset ExistFlag |
---|
| 483 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 484 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 485 | |
---|
| 486 | return ${ExistFlag} |
---|
| 487 | } |
---|
| 488 | |
---|
| 489 | #D-#================================================== |
---|
[67] | 490 | #D-function IGCM_sys_CountFileArchive |
---|
| 491 | #D-* Purpose: Count files on Archive filesystem |
---|
| 492 | #D-* Examples: |
---|
| 493 | #D- |
---|
| 494 | function IGCM_sys_CountFileArchive { |
---|
[657] | 495 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 496 | ls ${@} 2>/dev/null | wc -l |
---|
| 497 | if [ $? -gt 0 ] ; then |
---|
| 498 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 499 | fi |
---|
| 500 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[16] | 501 | } |
---|
| 502 | |
---|
| 503 | #D-#================================================== |
---|
[657] | 504 | #D-function IGCM_sys_CountFileBuffer |
---|
| 505 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 506 | #D-* Examples: |
---|
| 507 | #D- |
---|
| 508 | function IGCM_sys_CountFileBuffer { |
---|
| 509 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 510 | ls ${@} 2>/dev/null | wc -l |
---|
| 511 | if [ $? -gt 0 ] ; then |
---|
| 512 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 513 | fi |
---|
| 514 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 515 | } |
---|
| 516 | |
---|
| 517 | #D-#================================================== |
---|
[16] | 518 | #D-function IGCM_sys_Tree |
---|
| 519 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 520 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 521 | #D- |
---|
| 522 | function IGCM_sys_Tree { |
---|
[657] | 523 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 524 | if ( $DEBUG_sys ) ; then |
---|
| 525 | echo "IGCM_sys_Tree :" $@ |
---|
| 526 | fi |
---|
[16] | 527 | |
---|
[657] | 528 | \tree -f $@ |
---|
[16] | 529 | |
---|
[657] | 530 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[16] | 531 | } |
---|
| 532 | |
---|
| 533 | #D-#================================================== |
---|
| 534 | #D-function IGCM_sys_Tar |
---|
[657] | 535 | #D-* Purpose: master tar command |
---|
[16] | 536 | #D-* Examples: |
---|
| 537 | #D- |
---|
| 538 | function IGCM_sys_Tar { |
---|
[657] | 539 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 540 | if ( $DEBUG_sys ) ; then |
---|
| 541 | echo "IGCM_sys_Tar :" $@ |
---|
| 542 | fi |
---|
| 543 | \tar cf $@ |
---|
| 544 | if [ $? -gt 0 ] ; then |
---|
| 545 | echo "IGCM_sys_Tar : erreur." |
---|
| 546 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 547 | fi |
---|
| 548 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[16] | 549 | } |
---|
| 550 | |
---|
| 551 | #D-#================================================== |
---|
| 552 | #D-function IGCM_sys_UnTar |
---|
| 553 | #D-* Purpose: master un-tar command |
---|
| 554 | #D-* Examples: |
---|
| 555 | #D- |
---|
| 556 | function IGCM_sys_UnTar { |
---|
[657] | 557 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 558 | if ( $DEBUG_sys ) ; then |
---|
| 559 | echo "IGCM_sys_UnTar :" $@ |
---|
| 560 | fi |
---|
| 561 | \tar xvf $1 |
---|
| 562 | if [ $? -gt 0 ] ; then |
---|
| 563 | echo "IGCM_sys_UnTar : erreur." |
---|
| 564 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 565 | fi |
---|
| 566 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[16] | 567 | } |
---|
| 568 | |
---|
| 569 | #D-#================================================== |
---|
| 570 | #D-function IGCM_sys_Qsub |
---|
| 571 | #D-* Purpose: Qsub new job |
---|
| 572 | #D-* Examples: |
---|
| 573 | #D- |
---|
| 574 | function IGCM_sys_Qsub { |
---|
[657] | 575 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 576 | if ( $DEBUG_sys ) ; then |
---|
| 577 | echo "IGCM_sys_Qsub :" $@ |
---|
| 578 | fi |
---|
| 579 | /usr/local/bin/qsub -q medium -o ${Script_Output} -N ${config_UserChoices_JobName}.${CumulPeriod} < $1 |
---|
| 580 | if [ $? -gt 0 ] ; then |
---|
| 581 | echo "IGCM_sys_Qsub : erreur." |
---|
| 582 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 583 | fi |
---|
| 584 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[16] | 585 | } |
---|
| 586 | |
---|
| 587 | #D-#================================================== |
---|
| 588 | #D-function IGCM_sys_QsubPost |
---|
| 589 | #D-* Purpose: Qsub new job on scalaire |
---|
| 590 | #D-* Examples: |
---|
| 591 | #D- |
---|
| 592 | function IGCM_sys_QsubPost { |
---|
[657] | 593 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 594 | if ( $DEBUG_sys ) ; then |
---|
| 595 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 596 | fi |
---|
| 597 | /usr/local/bin/qsub -q medium -o ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job -v ${listVarEnv} |
---|
| 598 | if [ $? -gt 0 ] ; then |
---|
| 599 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 600 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 601 | fi |
---|
| 602 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[16] | 603 | } |
---|
| 604 | |
---|
| 605 | #D-************************* |
---|
[657] | 606 | #D- File transfer functions |
---|
[16] | 607 | #D-************************* |
---|
| 608 | #D- |
---|
| 609 | |
---|
| 610 | #D-#================================================== |
---|
| 611 | #D-function IGCM_sys_Rsync_out |
---|
| 612 | #D-* Purpose: treat return val of rsync |
---|
| 613 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 614 | #D- Error values and explanations can depend on your system version. |
---|
| 615 | function IGCM_sys_Rsync_out { |
---|
[717] | 616 | status=$1 |
---|
| 617 | if [ ! $status ] ; then |
---|
[657] | 618 | echo "rsync error !" |
---|
| 619 | fi |
---|
[16] | 620 | |
---|
[657] | 621 | if [ $MYLANG = "fr" ]; then |
---|
[717] | 622 | case $status in |
---|
[657] | 623 | 0) return ;; |
---|
| 624 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 625 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 626 | return;; |
---|
| 627 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 628 | echo "Incompatibilité de protocole." |
---|
| 629 | return;; |
---|
| 630 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 631 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 632 | echo "répertoires" |
---|
| 633 | return;; |
---|
| 634 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 635 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 636 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 637 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 638 | echo "pas par le serveur a été spécifiée." |
---|
| 639 | return;; |
---|
| 640 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 641 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 642 | return;; |
---|
| 643 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 644 | echo "Erreur d'entrée sortie fichier" |
---|
| 645 | return;; |
---|
| 646 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 647 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 648 | return;; |
---|
| 649 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 650 | echo "Erreur avec les diagnostics du programme" |
---|
| 651 | return;; |
---|
| 652 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 653 | echo "Erreur dans le code IPC" |
---|
| 654 | return;; |
---|
| 655 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 656 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 657 | return;; |
---|
| 658 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 659 | echo "Une erreur retournée par waitpid()" |
---|
| 660 | return;; |
---|
| 661 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 662 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 663 | return;; |
---|
| 664 | 23) echo "" |
---|
| 665 | echo "Erreur fichier inexistant" |
---|
| 666 | return;; |
---|
| 667 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 668 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 669 | return;; |
---|
[717] | 670 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[657] | 671 | return;; |
---|
| 672 | esac |
---|
| 673 | elif [ $MYLANG = "en" ] ; then |
---|
[717] | 674 | case $status in |
---|
[657] | 675 | 0) return;; |
---|
| 676 | 1) echo "rsync error : Syntax or usage error " |
---|
| 677 | return;; |
---|
| 678 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 679 | return;; |
---|
| 680 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 681 | return;; |
---|
| 682 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 683 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 684 | echo "them; or an option was specified that is supported by the client and" |
---|
| 685 | echo "not by the server." |
---|
| 686 | return;; |
---|
| 687 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 688 | return;; |
---|
| 689 | 10) echo "rsync error : Error in socket I/O " |
---|
| 690 | return;; |
---|
| 691 | 11) echo "rsync error : Error in file I/O " |
---|
| 692 | return;; |
---|
| 693 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 694 | return;; |
---|
| 695 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 696 | return;; |
---|
| 697 | 14) echo "rsync error : Error in IPC code " |
---|
| 698 | return;; |
---|
| 699 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 700 | return;; |
---|
| 701 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 702 | return;; |
---|
| 703 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 704 | return;; |
---|
| 705 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 706 | return;; |
---|
| 707 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 708 | return;; |
---|
| 709 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 710 | return;; |
---|
[717] | 711 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[657] | 712 | return;; |
---|
| 713 | esac |
---|
| 714 | else |
---|
| 715 | echo "unknown language $MYLANG." |
---|
| 716 | return |
---|
| 717 | fi |
---|
[16] | 718 | } |
---|
[657] | 719 | |
---|
[16] | 720 | #D-#================================================== |
---|
| 721 | #D-function IGCM_sys_Cp |
---|
| 722 | #D-* Purpose: generic cp |
---|
| 723 | #D-* Examples: |
---|
| 724 | #D- |
---|
| 725 | function IGCM_sys_Cp { |
---|
[657] | 726 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 727 | if ( $DEBUG_sys ) ; then |
---|
| 728 | echo "IGCM_sys_Cp :" $@ |
---|
| 729 | fi |
---|
[16] | 730 | |
---|
[717] | 731 | typeset status |
---|
[16] | 732 | |
---|
[717] | 733 | echo cp $@ > out_rsync 2>&1 |
---|
| 734 | \cp $@ >> out_rsync 2>&1 |
---|
| 735 | status=$? |
---|
[657] | 736 | |
---|
[717] | 737 | if [ ${status} -gt 0 ] ; then |
---|
| 738 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[657] | 739 | cat out_rsync |
---|
| 740 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 741 | else |
---|
[717] | 742 | \rm out_rsync |
---|
[657] | 743 | fi |
---|
| 744 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[16] | 745 | } |
---|
| 746 | |
---|
| 747 | #D-#================================================== |
---|
| 748 | #D-function IGCM_sys_Rm |
---|
| 749 | #D-* Purpose: generic rm |
---|
| 750 | #D-* Examples: |
---|
| 751 | #D- |
---|
| 752 | function IGCM_sys_Rm { |
---|
[657] | 753 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 754 | if ( $DEBUG_sys ) ; then |
---|
| 755 | echo "IGCM_sys_Rm :" $@ |
---|
| 756 | fi |
---|
[16] | 757 | |
---|
[717] | 758 | typeset status |
---|
[16] | 759 | |
---|
[657] | 760 | echo rm $@ > out_rsync 2>&1 |
---|
| 761 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 762 | status=$? |
---|
[657] | 763 | |
---|
[717] | 764 | if [ ${status} -gt 0 ] ; then |
---|
| 765 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[657] | 766 | cat out_rsync |
---|
| 767 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 768 | else |
---|
[717] | 769 | \rm out_rsync |
---|
[657] | 770 | fi |
---|
| 771 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[16] | 772 | } |
---|
| 773 | |
---|
| 774 | #D-#================================================== |
---|
[203] | 775 | #D-function IGCM_sys_RmRunDir |
---|
| 776 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 777 | #D- scheduler will do the job) |
---|
| 778 | #D-* Examples: |
---|
| 779 | #D- |
---|
| 780 | function IGCM_sys_RmRunDir { |
---|
[657] | 781 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 782 | if ( $DEBUG_sys ) ; then |
---|
| 783 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 784 | fi |
---|
[282] | 785 | |
---|
[717] | 786 | typeset status |
---|
[282] | 787 | |
---|
[657] | 788 | echo rm $@ > out_rsync 2>&1 |
---|
| 789 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 790 | status=$? |
---|
[282] | 791 | |
---|
[717] | 792 | if [ ${status} -gt 0 ] ; then |
---|
| 793 | echo "IGCM_sys_RmRunDir : error code ${status}" |
---|
[657] | 794 | cat out_rsync |
---|
| 795 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
[717] | 796 | else |
---|
| 797 | \rm out_rsync |
---|
[657] | 798 | fi |
---|
| 799 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[203] | 800 | } |
---|
| 801 | |
---|
| 802 | #D-#================================================== |
---|
[16] | 803 | #D-function IGCM_sys_Mv |
---|
| 804 | #D-* Purpose: generic move |
---|
| 805 | #D-* Examples: |
---|
| 806 | #D- |
---|
| 807 | function IGCM_sys_Mv { |
---|
[657] | 808 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 809 | if ( $DEBUG_sys ) ; then |
---|
| 810 | echo "IGCM_sys_Mv :" $@ |
---|
| 811 | fi |
---|
[16] | 812 | |
---|
[657] | 813 | if [ $DRYRUN = 0 ]; then |
---|
[16] | 814 | |
---|
[717] | 815 | typeset status |
---|
[657] | 816 | |
---|
| 817 | echo mv $@ > out_rsync 2>&1 |
---|
| 818 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 819 | status=$? |
---|
[657] | 820 | |
---|
[717] | 821 | if [ ${status} -gt 0 ] ; then |
---|
| 822 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[657] | 823 | cat out_rsync |
---|
| 824 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[173] | 825 | else |
---|
[717] | 826 | \rm out_rsync |
---|
[16] | 827 | fi |
---|
[657] | 828 | else |
---|
| 829 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 830 | fi |
---|
[16] | 831 | |
---|
[657] | 832 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[16] | 833 | } |
---|
| 834 | |
---|
| 835 | #D-#================================================== |
---|
| 836 | #D-function IGCM_sys_Put_Dir |
---|
| 837 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 838 | #D-* Examples: |
---|
| 839 | #D- |
---|
| 840 | function IGCM_sys_Put_Dir { |
---|
[657] | 841 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 842 | if ( $DEBUG_sys ) ; then |
---|
| 843 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 844 | fi |
---|
| 845 | if [ $DRYRUN = 0 ]; then |
---|
| 846 | if [ ! -d ${1} ] ; then |
---|
| 847 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 848 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 849 | return |
---|
[16] | 850 | fi |
---|
| 851 | |
---|
[717] | 852 | typeset status |
---|
[16] | 853 | |
---|
[717] | 854 | # Only if we use rsync |
---|
| 855 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 856 | # |
---|
| 857 | #USUAL WAY |
---|
| 858 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
| 859 | status=$? |
---|
[16] | 860 | |
---|
[717] | 861 | if [ ${status} -gt 0 ] ; then |
---|
| 862 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[657] | 863 | cat out_rsync |
---|
| 864 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[16] | 865 | else |
---|
[717] | 866 | \rm out_rsync |
---|
[16] | 867 | fi |
---|
[657] | 868 | else |
---|
| 869 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 870 | fi |
---|
| 871 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[16] | 872 | } |
---|
| 873 | |
---|
| 874 | #D-#================================================== |
---|
| 875 | #D-function IGCM_sys_Get_Dir |
---|
[717] | 876 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[16] | 877 | #D-* Examples: |
---|
| 878 | #D- |
---|
| 879 | function IGCM_sys_Get_Dir { |
---|
[657] | 880 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 881 | if ( $DEBUG_sys ) ; then |
---|
| 882 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 883 | fi |
---|
| 884 | if [ $DRYRUN = 0 ]; then |
---|
| 885 | if [ ! -d ${1} ] ; then |
---|
| 886 | echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 887 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 888 | return |
---|
[16] | 889 | fi |
---|
| 890 | |
---|
[717] | 891 | typeset status |
---|
[16] | 892 | |
---|
[719] | 893 | #USUAL WAY |
---|
[657] | 894 | \cp -R $1 $2 > out_rsync 2>&1 |
---|
[717] | 895 | status=$? |
---|
[16] | 896 | |
---|
[717] | 897 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 898 | echo "IGCM_sys_Get_Dir : error." |
---|
| 899 | cat out_rsync |
---|
| 900 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[16] | 901 | else |
---|
[717] | 902 | \rm out_rsync |
---|
[16] | 903 | fi |
---|
[657] | 904 | else |
---|
| 905 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 906 | fi |
---|
| 907 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[16] | 908 | } |
---|
| 909 | |
---|
| 910 | #D-#================================================== |
---|
| 911 | #D-function IGCM_sys_Get_Master |
---|
| 912 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 913 | #D-* Examples: |
---|
| 914 | #D- |
---|
| 915 | function IGCM_sys_Get_Master { |
---|
[657] | 916 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 917 | if ( $DEBUG_sys ) ; then |
---|
| 918 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 919 | fi |
---|
| 920 | if [ $DRYRUN = 0 ]; then |
---|
| 921 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
| 922 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 923 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 924 | return |
---|
[16] | 925 | fi |
---|
| 926 | |
---|
[717] | 927 | typeset status |
---|
[16] | 928 | |
---|
[719] | 929 | #USUAL WAY |
---|
[669] | 930 | cp -RL $1 $2 > out_rsync 2>&1 |
---|
[717] | 931 | status=$? |
---|
[16] | 932 | |
---|
[717] | 933 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 934 | echo "IGCM_sys_Get_Master : error." |
---|
| 935 | cat out_rsync |
---|
| 936 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[16] | 937 | else |
---|
[657] | 938 | rm out_rsync |
---|
[16] | 939 | fi |
---|
[657] | 940 | else |
---|
| 941 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 942 | fi |
---|
| 943 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[16] | 944 | } |
---|
| 945 | |
---|
| 946 | #D-#================================================== |
---|
| 947 | #D-function IGCM_sys_Put_Rest |
---|
[717] | 948 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[282] | 949 | #D- File and target directory must exist. |
---|
[16] | 950 | #D-* Examples: |
---|
| 951 | #D- |
---|
| 952 | function IGCM_sys_Put_Rest { |
---|
[657] | 953 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 954 | if ( $DEBUG_sys ) ; then |
---|
| 955 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 956 | fi |
---|
| 957 | if [ $DRYRUN = 0 ]; then |
---|
| 958 | if [ ! -f ${1} ] ; then |
---|
| 959 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 960 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[16] | 961 | fi |
---|
[717] | 962 | |
---|
| 963 | typeset status |
---|
| 964 | # |
---|
[657] | 965 | if [ X${JobType} = XRUN ] ; then |
---|
| 966 | IGCM_sys_Chmod 444 ${1} |
---|
| 967 | fi |
---|
[16] | 968 | |
---|
[717] | 969 | # |
---|
| 970 | # USUAL WAY |
---|
| 971 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 972 | status=$? |
---|
[16] | 973 | |
---|
[717] | 974 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 975 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 976 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[16] | 977 | |
---|
[717] | 978 | # #RSYNC WITH NFS USE |
---|
| 979 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 980 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[16] | 981 | |
---|
[717] | 982 | # status=$? |
---|
| 983 | # IGCM_sys_Rsync_out $status |
---|
| 984 | |
---|
| 985 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 986 | # (( status=status+$? )) |
---|
| 987 | |
---|
| 988 | if [ ${status} -gt 0 ] ; then |
---|
| 989 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[657] | 990 | cat out_rsync |
---|
| 991 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
| 992 | else |
---|
[717] | 993 | \rm out_rsync |
---|
[657] | 994 | fi |
---|
| 995 | else |
---|
| 996 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 997 | fi |
---|
| 998 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
| 999 | } |
---|
[16] | 1000 | |
---|
[657] | 1001 | #D-#================================================== |
---|
| 1002 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1003 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1004 | #D- File and target directory must exist. |
---|
| 1005 | #D-* Examples: |
---|
| 1006 | #D- |
---|
| 1007 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1008 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1009 | if ( $DEBUG_sys ) ; then |
---|
| 1010 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1011 | fi |
---|
| 1012 | if [ $DRYRUN = 0 ]; then |
---|
| 1013 | if [ ! -f ${1} ] ; then |
---|
| 1014 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1015 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1016 | fi |
---|
[16] | 1017 | |
---|
[717] | 1018 | typeset status |
---|
[657] | 1019 | # |
---|
| 1020 | if [ X${JobType} = XRUN ] ; then |
---|
| 1021 | IGCM_sys_Chmod 444 ${1} |
---|
| 1022 | fi |
---|
| 1023 | |
---|
| 1024 | # |
---|
| 1025 | # USUAL WAY |
---|
| 1026 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1027 | status=$? |
---|
[657] | 1028 | |
---|
[717] | 1029 | if [ ${status} -gt 0 ] ; then |
---|
| 1030 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[657] | 1031 | cat out_rsync |
---|
| 1032 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
[16] | 1033 | else |
---|
[657] | 1034 | \rm out_rsync |
---|
[16] | 1035 | fi |
---|
[657] | 1036 | else |
---|
| 1037 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1038 | fi |
---|
| 1039 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
[16] | 1040 | } |
---|
| 1041 | |
---|
| 1042 | #D-#================================================== |
---|
[801] | 1043 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1044 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1045 | #D-* Examples: |
---|
| 1046 | #D- |
---|
| 1047 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1048 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1049 | echo $1 |
---|
| 1050 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1051 | } |
---|
| 1052 | |
---|
| 1053 | #D-#================================================== |
---|
[16] | 1054 | #D-function IGCM_sys_Put_Out |
---|
[717] | 1055 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[16] | 1056 | #D-* Examples: |
---|
| 1057 | #D- |
---|
| 1058 | function IGCM_sys_Put_Out { |
---|
[657] | 1059 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1060 | if ( $DEBUG_sys ) ; then |
---|
| 1061 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1062 | fi |
---|
| 1063 | if [ $DRYRUN = 0 ]; then |
---|
| 1064 | if [ -f ${1} ] ; then |
---|
| 1065 | if [ ! -d $( dirname $2 ) ] ; then |
---|
| 1066 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1067 | fi |
---|
| 1068 | else |
---|
| 1069 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1070 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1071 | return 1 |
---|
[16] | 1072 | fi |
---|
| 1073 | |
---|
[717] | 1074 | typeset status |
---|
[719] | 1075 | # |
---|
[657] | 1076 | if [ X${JobType} = XRUN ] ; then |
---|
| 1077 | if [ X${3} = X ] ; then |
---|
| 1078 | IGCM_sys_Chmod 444 ${1} |
---|
| 1079 | fi |
---|
| 1080 | fi |
---|
[717] | 1081 | # |
---|
[16] | 1082 | |
---|
[657] | 1083 | echo ${RSYNC} ${RSYNC_opt} $1 $2 > out_rsync 2>&1 |
---|
| 1084 | ${RSYNC} ${RSYNC_opt} $1 $2 >> out_rsync 2>&1 |
---|
[717] | 1085 | status=$? |
---|
| 1086 | IGCM_sys_Rsync_out $status |
---|
[16] | 1087 | |
---|
[657] | 1088 | ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[717] | 1089 | (( status=status+$? )) |
---|
[16] | 1090 | |
---|
[717] | 1091 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 1092 | echo "IGCM_sys_Put_Out : error." |
---|
| 1093 | cat out_rsync |
---|
| 1094 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[16] | 1095 | else |
---|
[717] | 1096 | \rm out_rsync |
---|
[16] | 1097 | fi |
---|
[657] | 1098 | else |
---|
| 1099 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1100 | fi |
---|
| 1101 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1102 | return 0 |
---|
[16] | 1103 | } |
---|
| 1104 | |
---|
| 1105 | #D-#================================================== |
---|
[657] | 1106 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1107 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1108 | #D-* Examples: |
---|
| 1109 | #D- |
---|
| 1110 | function IGCM_sys_PutBuffer_Out { |
---|
| 1111 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1112 | if ( $DEBUG_sys ) ; then |
---|
| 1113 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1114 | fi |
---|
[719] | 1115 | |
---|
| 1116 | typeset status |
---|
| 1117 | |
---|
[657] | 1118 | if [ $DRYRUN = 0 ]; then |
---|
| 1119 | if [ ! -f ${1} ] ; then |
---|
| 1120 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1121 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1122 | return 1 |
---|
| 1123 | fi |
---|
| 1124 | # |
---|
| 1125 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1126 | # |
---|
| 1127 | |
---|
| 1128 | if [ X${JobType} = XRUN ] ; then |
---|
| 1129 | if [ X${3} = X ] ; then |
---|
| 1130 | IGCM_sys_Chmod 444 ${1} |
---|
| 1131 | fi |
---|
| 1132 | fi |
---|
| 1133 | # |
---|
| 1134 | # USUAL WAY |
---|
| 1135 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1136 | status=$? |
---|
[657] | 1137 | |
---|
[717] | 1138 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 1139 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1140 | cat out_rsync |
---|
| 1141 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1142 | else |
---|
| 1143 | \rm out_rsync |
---|
| 1144 | fi |
---|
| 1145 | else |
---|
| 1146 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1147 | fi |
---|
| 1148 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1149 | return 0 |
---|
| 1150 | } |
---|
| 1151 | |
---|
| 1152 | #D-#================================================== |
---|
[16] | 1153 | #D-function IGCM_sys_Get |
---|
| 1154 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1155 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1156 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1157 | function IGCM_sys_Get { |
---|
[657] | 1158 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[16] | 1159 | |
---|
[717] | 1160 | typeset DEST RET status dm_liste ifile target |
---|
[16] | 1161 | |
---|
[657] | 1162 | if ( $DEBUG_sys ) ; then |
---|
| 1163 | echo "IGCM_sys_Get :" $@ |
---|
| 1164 | fi |
---|
| 1165 | if [ $DRYRUN -le 2 ]; then |
---|
| 1166 | if [ X${1} = X'/l' ] ; then |
---|
[717] | 1167 | # test if the first file is present in the old computation : |
---|
[657] | 1168 | eval set +A dm_liste \${${2}} |
---|
| 1169 | else |
---|
| 1170 | dm_liste=${1} |
---|
[16] | 1171 | fi |
---|
[657] | 1172 | eval DEST=\${${#}} |
---|
[16] | 1173 | |
---|
[717] | 1174 | # test if the (first) file is present in the old computation : |
---|
[657] | 1175 | IGCM_sys_TestFileArchive ${dm_liste[0]} |
---|
[717] | 1176 | status=$? |
---|
| 1177 | if [ ${status} -gt 0 ] ; then |
---|
[657] | 1178 | echo "IGCM_sys_Get, ERROR : regular file ${dm_liste[0]} DOES NOT EXIST ." |
---|
| 1179 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[719] | 1180 | #return |
---|
[657] | 1181 | fi |
---|
[16] | 1182 | |
---|
[657] | 1183 | (( RET=0 )) |
---|
| 1184 | for target in ${dm_liste[*]} ; do |
---|
| 1185 | \cp ${target} ${DEST} >> out_rsync 2>&1 |
---|
| 1186 | (( RET=RET+$? )) |
---|
| 1187 | done |
---|
[16] | 1188 | |
---|
| 1189 | # echo ${RSYNC} ${RSYNC_opt} $@ > out_rsync 2>&1 |
---|
| 1190 | # ${RSYNC} ${RSYNC_opt} $@ >> out_rsync 2>&1 |
---|
[717] | 1191 | # status=$? |
---|
| 1192 | # IGCM_sys_Rsync_out $status |
---|
[16] | 1193 | |
---|
[657] | 1194 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1195 | # (( RET=RET+$? )) |
---|
[16] | 1196 | |
---|
[657] | 1197 | if [ ${RET} -gt 0 ] ; then |
---|
[717] | 1198 | echo "IGCM_sys_Get : error" |
---|
[657] | 1199 | cat out_rsync |
---|
[717] | 1200 | \rm out_rsync |
---|
[657] | 1201 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
[16] | 1202 | else |
---|
[717] | 1203 | \rm out_rsync |
---|
[16] | 1204 | fi |
---|
[657] | 1205 | else |
---|
| 1206 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1207 | fi |
---|
| 1208 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[16] | 1209 | } |
---|
| 1210 | |
---|
| 1211 | #D-#================================================== |
---|
[657] | 1212 | #D-function IGCM_sys_GetBuffer |
---|
| 1213 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1214 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1215 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1216 | function IGCM_sys_GetBuffer { |
---|
| 1217 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1218 | |
---|
[717] | 1219 | typeset DEST RET status buf_liste ifile target file_work |
---|
[657] | 1220 | |
---|
| 1221 | if ( $DEBUG_sys ) ; then |
---|
| 1222 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1223 | fi |
---|
| 1224 | if [ $DRYRUN -le 2 ]; then |
---|
| 1225 | if [ X${1} = X'/l' ] ; then |
---|
| 1226 | # test if the first file is present in the old computation : |
---|
| 1227 | eval set +A buf_liste \${${2}} |
---|
| 1228 | else |
---|
| 1229 | eval set +A buf_liste ${1} |
---|
| 1230 | fi |
---|
| 1231 | eval DEST=\${${#}} |
---|
| 1232 | |
---|
| 1233 | #USUAL WAY |
---|
| 1234 | if [ X${1} = X'/l' ] ; then |
---|
| 1235 | (( RET=0 )) |
---|
| 1236 | for target in ${buf_liste[*]} ; do |
---|
| 1237 | local_file=$( basename ${target} ) |
---|
| 1238 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1239 | (( RET = RET + $? )) |
---|
| 1240 | done |
---|
| 1241 | else |
---|
| 1242 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
[717] | 1243 | status=$? |
---|
[657] | 1244 | fi |
---|
| 1245 | |
---|
| 1246 | if [ ${RET} -gt 0 ] ; then |
---|
[717] | 1247 | echo "IGCM_sys_GetBuffer : error" |
---|
[657] | 1248 | cat out_rsync |
---|
[717] | 1249 | \rm out_rsync |
---|
[657] | 1250 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1251 | else |
---|
| 1252 | \rm out_rsync |
---|
| 1253 | fi |
---|
| 1254 | else |
---|
| 1255 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1256 | fi |
---|
| 1257 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1258 | } |
---|
| 1259 | |
---|
| 1260 | #D-#================================================== |
---|
| 1261 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1262 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1263 | #D-* Examples: |
---|
| 1264 | #D- |
---|
| 1265 | function IGCM_sys_GetDate_FichWork { |
---|
| 1266 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1267 | if ( $DEBUG_sys ) ; then |
---|
| 1268 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1269 | fi |
---|
| 1270 | typeset dateF |
---|
| 1271 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1272 | eval ${2}=${dateF[5]} |
---|
| 1273 | |
---|
[800] | 1274 | # donne la date filesys d'un fichier sur la machine work |
---|
[657] | 1275 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
| 1276 | } |
---|
| 1277 | |
---|
| 1278 | #D-#================================================== |
---|
| 1279 | #D-function IGCM_sys_GetDate_FichArchive |
---|
| 1280 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
| 1281 | #D-* Examples: |
---|
| 1282 | #D- |
---|
| 1283 | function IGCM_sys_GetDate_FichArchive { |
---|
| 1284 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1285 | if ( $DEBUG_sys ) ; then |
---|
| 1286 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1287 | fi |
---|
| 1288 | typeset dateF |
---|
| 1289 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1290 | eval ${2}=${dateF[5]} |
---|
| 1291 | |
---|
| 1292 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1293 | } |
---|
| 1294 | |
---|
| 1295 | #D-#================================================== |
---|
[343] | 1296 | #D-function IGCM_sys_Dods_Rm |
---|
[717] | 1297 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
[343] | 1298 | #D-* Examples: |
---|
| 1299 | #D- |
---|
| 1300 | function IGCM_sys_Dods_Rm { |
---|
[657] | 1301 | if ( $DEBUG_sys ) ; then |
---|
| 1302 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1303 | fi |
---|
| 1304 | return 0 |
---|
[343] | 1305 | } |
---|
| 1306 | |
---|
| 1307 | #D-#================================================== |
---|
| 1308 | #D-function IGCM_sys_Dods_Cp |
---|
[717] | 1309 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
[343] | 1310 | #D-* Examples: |
---|
| 1311 | #D- |
---|
| 1312 | function IGCM_sys_Dods_Cp { |
---|
[657] | 1313 | if ( $DEBUG_sys ) ; then |
---|
| 1314 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1315 | fi |
---|
| 1316 | return 0 |
---|
[343] | 1317 | } |
---|
| 1318 | |
---|
| 1319 | #D-#================================================== |
---|
[16] | 1320 | #D-function IGCM_sys_Put_Dods |
---|
[717] | 1321 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
[16] | 1322 | #D-* Examples: |
---|
| 1323 | #D- |
---|
| 1324 | function IGCM_sys_Put_Dods { |
---|
[657] | 1325 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1326 | if ( $DEBUG_sys ) ; then |
---|
| 1327 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1328 | fi |
---|
| 1329 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
[16] | 1330 | } |
---|
| 1331 | |
---|
[657] | 1332 | ############################################################## |
---|
| 1333 | # REBUILD OPERATOR |
---|
[536] | 1334 | |
---|
[657] | 1335 | function IGCM_sys_rebuild { |
---|
| 1336 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1337 | if ( $DEBUG_sys ) ; then |
---|
| 1338 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1339 | fi |
---|
[717] | 1340 | |
---|
| 1341 | typeset status |
---|
| 1342 | |
---|
[657] | 1343 | /home/users/igcmg/rebuild/bin/rebuild -f -o $@ |
---|
[717] | 1344 | status=$? |
---|
| 1345 | if [ ${status} -gt 0 ] ; then |
---|
| 1346 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
[657] | 1347 | IGCM_debug_Exit "rebuild" |
---|
| 1348 | fi |
---|
| 1349 | |
---|
| 1350 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[16] | 1351 | } |
---|
| 1352 | |
---|
[697] | 1353 | function IGCM_sys_rebuild_station { |
---|
| 1354 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1355 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1356 | if ( $DEBUG_sys ) ; then |
---|
| 1357 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1358 | fi |
---|
| 1359 | list_opt=$@ |
---|
| 1360 | |
---|
[800] | 1361 | # Invert Axis : t,x -> x,t |
---|
[697] | 1362 | # t,pres,x -> x,t,pres |
---|
| 1363 | # So that we can concatenate along x |
---|
| 1364 | i=0 |
---|
| 1365 | for file_in in ${list_opt} ; do |
---|
| 1366 | (( i = i + 1)) |
---|
| 1367 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1368 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1369 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1370 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1371 | done |
---|
| 1372 | |
---|
| 1373 | # Concatenate |
---|
| 1374 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1375 | |
---|
| 1376 | # Re-ivert file |
---|
| 1377 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1378 | |
---|
| 1379 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1380 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1381 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1382 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1383 | # BEGIN reordering |
---|
| 1384 | |
---|
| 1385 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1386 | # We isolate this in the code below: |
---|
| 1387 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1388 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1389 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1390 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1391 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1392 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1393 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1394 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1395 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1396 | # typeset -Z4 j4 |
---|
| 1397 | # typeset -Z3 j3 |
---|
| 1398 | |
---|
| 1399 | # unset list_opt |
---|
| 1400 | # set +A list_opt $@ |
---|
| 1401 | |
---|
| 1402 | # Filename after rebuild |
---|
| 1403 | # file_out=${list_opt[0]} |
---|
| 1404 | # Prefix of output files |
---|
| 1405 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1406 | # Number of procs |
---|
| 1407 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1408 | |
---|
| 1409 | # iProc=0 |
---|
| 1410 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1411 | # Array containing Station as a number |
---|
| 1412 | # unset proc_stn |
---|
| 1413 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1414 | # Number of stations produced by processor proc |
---|
| 1415 | # stationLast=${#proc_stn[*]} |
---|
| 1416 | # Proc number on 4 digits |
---|
| 1417 | # j4=${iProc} |
---|
| 1418 | # Init |
---|
| 1419 | # iStation=0 |
---|
| 1420 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1421 | # Station number on 3 digits |
---|
| 1422 | # j3=${proc_stn[${iStation}]} |
---|
| 1423 | # Extract station |
---|
[800] | 1424 | # Invert Axis : t,x -> x,t |
---|
[697] | 1425 | # t,pres,x -> x,t,pres |
---|
| 1426 | # So that we can concatenate along x |
---|
| 1427 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1428 | # (( iStation = iStation + 1 )) |
---|
| 1429 | # done |
---|
| 1430 | # (( iProc = iProc + 1 )) |
---|
| 1431 | # done |
---|
| 1432 | |
---|
| 1433 | # Concatenate all station along x |
---|
| 1434 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1435 | |
---|
| 1436 | # Re-invert file |
---|
| 1437 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1438 | |
---|
| 1439 | # END reordering |
---|
| 1440 | |
---|
| 1441 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1442 | } |
---|
| 1443 | |
---|
[657] | 1444 | ############################################################ |
---|
| 1445 | # Activate Running Environnment Variables |
---|
[536] | 1446 | |
---|
[657] | 1447 | function IGCM_sys_activ_variables { |
---|
| 1448 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1449 | if ( $DEBUG_sys ) ; then |
---|
| 1450 | echo "IGCM_sys_activ_variables" |
---|
| 1451 | fi |
---|
| 1452 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[16] | 1453 | } |
---|
| 1454 | |
---|
[657] | 1455 | ############################################################ |
---|
| 1456 | # Desactivate Running Environnment Variables |
---|
[16] | 1457 | |
---|
[657] | 1458 | function IGCM_sys_desactiv_variables { |
---|
| 1459 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 1460 | if ( $DEBUG_sys ) ; then |
---|
| 1461 | echo "IGCM_sys_desactiv_variables" |
---|
| 1462 | fi |
---|
| 1463 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
| 1464 | } |
---|
| 1465 | |
---|
| 1466 | ############################################################ |
---|
[800] | 1467 | # Build MPI/OMP scripts run file (dummy function) |
---|
[657] | 1468 | |
---|
| 1469 | function IGCM_sys_build_run_file { |
---|
| 1470 | |
---|
[664] | 1471 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
[657] | 1472 | |
---|
| 1473 | } |
---|
| 1474 | |
---|
| 1475 | ############################################################ |
---|
| 1476 | # Build MPI/OMP scripts |
---|
| 1477 | function IGCM_sys_build_execution_scripts |
---|
| 1478 | { |
---|
| 1479 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
| 1480 | if ( $DEBUG_sys ) ; then |
---|
| 1481 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
| 1482 | fi |
---|
| 1483 | typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut |
---|
| 1484 | typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc |
---|
| 1485 | typeset num_corempi nombre_restant_node nombre_restant_comp |
---|
| 1486 | |
---|
| 1487 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 1488 | IGCM_debug_Exit "IGCM_sys_titane build_execution_scripts : Job_${config_UserChoices_JobName} doesn't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 1489 | fi |
---|
| 1490 | |
---|
| 1491 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 1492 | |
---|
| 1493 | if [ -f run_file ] ; then |
---|
| 1494 | IGCM_sys_Rm -f run_file |
---|
[16] | 1495 | fi |
---|
[657] | 1496 | touch run_file |
---|
| 1497 | |
---|
| 1498 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1499 | |
---|
| 1500 | # Hosts treatment |
---|
| 1501 | |
---|
| 1502 | ${HOST_MPIRUN_COMMAND} hostname | sort | uniq > hosts.tmp |
---|
| 1503 | |
---|
| 1504 | i=0 |
---|
| 1505 | rm -f hosts |
---|
| 1506 | IGCM_debug_Print 1 "sys Obelix, Hosts avaible :" |
---|
| 1507 | for nodes in `cat hosts.tmp` ; do |
---|
| 1508 | host[$i]=$nodes |
---|
| 1509 | echo "${host[$i]} slots=1 max_slots=1" >> hosts |
---|
| 1510 | IGCM_debug_Print 1 ${host[$i]} |
---|
| 1511 | i=$((i+1)) |
---|
| 1512 | done |
---|
| 1513 | rm -f hosts.tmp |
---|
| 1514 | |
---|
| 1515 | listnodes=${host[*]} |
---|
| 1516 | |
---|
| 1517 | EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts" |
---|
| 1518 | |
---|
| 1519 | # Initialisation |
---|
| 1520 | |
---|
| 1521 | init_node=y |
---|
| 1522 | node_num_current=0 |
---|
| 1523 | start_num=0 |
---|
| 1524 | init_exec=n |
---|
| 1525 | |
---|
| 1526 | # Test : if oasis is there, we put it at the first position |
---|
| 1527 | |
---|
| 1528 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1529 | |
---|
| 1530 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1531 | |
---|
| 1532 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1533 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1534 | |
---|
| 1535 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1536 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1537 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1538 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1539 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1540 | echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 1541 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1542 | |
---|
| 1543 | init_node=n |
---|
| 1544 | |
---|
| 1545 | (( nombre_restant_node = NUM_COREPERNODE - 1 )) |
---|
| 1546 | node_num_current=0 |
---|
| 1547 | node_current=${host[${node_num_current}]} |
---|
| 1548 | |
---|
| 1549 | EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh" |
---|
| 1550 | |
---|
| 1551 | init_exec=y |
---|
| 1552 | start_num=1 |
---|
| 1553 | |
---|
| 1554 | fi |
---|
| 1555 | |
---|
| 1556 | done |
---|
| 1557 | |
---|
| 1558 | # Then loop on the components (except for oasis) |
---|
| 1559 | |
---|
| 1560 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 1561 | |
---|
| 1562 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1563 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1564 | |
---|
| 1565 | # Only if we really have an executable for the component : |
---|
| 1566 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1567 | |
---|
| 1568 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1569 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1570 | |
---|
| 1571 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1572 | # echo "set -vx" >> script_${ExeNameOut}.ksh |
---|
| 1573 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1574 | #echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 1575 | #echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 1576 | #echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 1577 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 1578 | echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh |
---|
| 1579 | echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh |
---|
| 1580 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1581 | |
---|
| 1582 | node_num=0 |
---|
| 1583 | |
---|
| 1584 | # We define the number of MPI process to be assigned for the component |
---|
| 1585 | |
---|
| 1586 | nombre_restant_comp=${comp_proc_mpi_loc} |
---|
| 1587 | |
---|
| 1588 | # Loop on the allocated nodes |
---|
| 1589 | |
---|
| 1590 | for node in ${listnodes} ; do |
---|
| 1591 | |
---|
| 1592 | # We go to the current node |
---|
| 1593 | if [ ${node_num} = ${node_num_current} ] ; then |
---|
| 1594 | |
---|
| 1595 | node_current=${host[${node_num_current}]} |
---|
| 1596 | |
---|
| 1597 | # If first time on the node : initialisation |
---|
| 1598 | |
---|
| 1599 | if [ ${init_node} = y ] ; then |
---|
| 1600 | nombre_restant_node=${NUM_COREPERNODE} |
---|
| 1601 | fi |
---|
| 1602 | |
---|
| 1603 | # Test on the number of OMP threads |
---|
| 1604 | |
---|
| 1605 | if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then |
---|
| 1606 | (( node_num = node_num + 1 )) |
---|
| 1607 | node_num_current=${node_num} |
---|
| 1608 | init_node=y |
---|
| 1609 | continue |
---|
| 1610 | fi |
---|
| 1611 | |
---|
| 1612 | # Number of MPI process to assign |
---|
| 1613 | |
---|
| 1614 | (( num_corempi = nombre_restant_node / comp_proc_omp_loc )) |
---|
| 1615 | |
---|
| 1616 | if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then |
---|
| 1617 | num_corempi=${nombre_restant_comp} |
---|
| 1618 | fi |
---|
| 1619 | |
---|
| 1620 | (( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc )) |
---|
| 1621 | (( nombre_restant_comp = nombre_restant_comp - num_corempi )) |
---|
| 1622 | |
---|
| 1623 | if [ ${init_exec} = y ] ; then |
---|
| 1624 | EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 1625 | else |
---|
| 1626 | EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 1627 | init_exec=y |
---|
| 1628 | fi |
---|
| 1629 | |
---|
| 1630 | (( start_num = num_corempi + start_num )) |
---|
| 1631 | |
---|
| 1632 | else |
---|
| 1633 | |
---|
| 1634 | (( node_num = node_num + 1 )) |
---|
| 1635 | continue |
---|
| 1636 | fi |
---|
| 1637 | |
---|
| 1638 | # Test on the number of core/process remaining on the node/component |
---|
| 1639 | |
---|
| 1640 | if [ ${nombre_restant_node} = 0 ] ; then |
---|
| 1641 | (( node_num = node_num + 1 )) |
---|
| 1642 | node_num_current=${node_num} |
---|
| 1643 | init_node=y |
---|
| 1644 | |
---|
| 1645 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 1646 | break 1 |
---|
| 1647 | fi |
---|
| 1648 | else |
---|
| 1649 | |
---|
| 1650 | node_num_current=${node_num} |
---|
| 1651 | init_node=n |
---|
| 1652 | |
---|
| 1653 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 1654 | break 1 |
---|
| 1655 | fi |
---|
| 1656 | fi |
---|
| 1657 | done |
---|
| 1658 | fi |
---|
| 1659 | done |
---|
| 1660 | |
---|
| 1661 | else |
---|
| 1662 | |
---|
[664] | 1663 | # Then first loop on the components for the coupler ie oasis |
---|
[657] | 1664 | |
---|
[664] | 1665 | ## the coupler ie oasis must be the first one |
---|
| 1666 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[657] | 1667 | |
---|
[664] | 1668 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[657] | 1669 | |
---|
| 1670 | # for CPL component only |
---|
[664] | 1671 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 1672 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1673 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file |
---|
| 1674 | fi |
---|
| 1675 | done |
---|
[657] | 1676 | |
---|
| 1677 | # Then second loop on the components |
---|
| 1678 | |
---|
[664] | 1679 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[657] | 1680 | |
---|
[664] | 1681 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[657] | 1682 | |
---|
[664] | 1683 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
| 1684 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 1685 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 1686 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
| 1687 | fi |
---|
| 1688 | done |
---|
| 1689 | IGCM_sys_Chmod u+x run_file |
---|
[657] | 1690 | |
---|
[664] | 1691 | EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file" |
---|
[657] | 1692 | |
---|
[16] | 1693 | fi |
---|
| 1694 | |
---|
[657] | 1695 | else # Only one executable. launch it. |
---|
| 1696 | |
---|
[664] | 1697 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[657] | 1698 | |
---|
[664] | 1699 | # Only if we really have an executable for the component : |
---|
| 1700 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 1701 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[657] | 1702 | |
---|
[664] | 1703 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 1704 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 1705 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 1706 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 1707 | echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
| 1708 | fi |
---|
| 1709 | if ( ${OK_PARA_MPI} ) ; then |
---|
| 1710 | # Default : mpirun used if nb_proc gt 1 |
---|
| 1711 | # pour sortie out/err par process |
---|
| 1712 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh |
---|
| 1713 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1714 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1715 | EXECUTION="${HOST_MPIRUN_COMMAND} ./script_${ExeNameOut}.ksh" |
---|
| 1716 | else |
---|
| 1717 | # Default : mpirun is NOT used if nb_proc eq 1 |
---|
| 1718 | # pour sortie out/err par process |
---|
| 1719 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 1720 | echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh |
---|
| 1721 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
| 1722 | EXECUTION="time ./script_${ExeNameOut}.ksh" |
---|
| 1723 | fi |
---|
| 1724 | fi |
---|
| 1725 | done |
---|
[657] | 1726 | |
---|
| 1727 | fi |
---|
| 1728 | |
---|
| 1729 | IGCM_debug_Print 1 "sys Obelix : La commande d execution est " |
---|
| 1730 | IGCM_debug_Print 1 $EXECUTION |
---|
| 1731 | |
---|
| 1732 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[16] | 1733 | } |
---|
| 1734 | |
---|
[657] | 1735 | ############################################################ |
---|
| 1736 | # Check of space available on temporary filesytems |
---|
| 1737 | function IGCM_sys_check_quota { |
---|
| 1738 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 1739 | if ( $DEBUG_sys ) ; then |
---|
| 1740 | echo "IGCM_sys_check_quota" |
---|
| 1741 | fi |
---|
| 1742 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 1743 | } |
---|
| 1744 | |
---|
[16] | 1745 | ############################################################## |
---|
| 1746 | # NCO OPERATOR |
---|
| 1747 | |
---|
[377] | 1748 | function IGCM_sys_ncap2 { |
---|
[657] | 1749 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 1750 | if ( $DEBUG_sys ) ; then |
---|
| 1751 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 1752 | fi |
---|
[714] | 1753 | |
---|
| 1754 | typeset NB_ESSAI DELAI status i |
---|
| 1755 | # number of tentative |
---|
| 1756 | NB_ESSAI=3 |
---|
| 1757 | # time delay between tentative |
---|
| 1758 | DELAI=2 |
---|
| 1759 | |
---|
| 1760 | i=0 |
---|
| 1761 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1762 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 1763 | status=$? |
---|
| 1764 | if [ ${status} -gt 0 ] ; then |
---|
| 1765 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 1766 | cat out_rsync |
---|
| 1767 | \rm out_rsync |
---|
| 1768 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1769 | sleep $DELAI |
---|
[714] | 1770 | else |
---|
| 1771 | \rm out_rsync |
---|
| 1772 | break |
---|
| 1773 | fi |
---|
| 1774 | (( i = i + 1 )) |
---|
| 1775 | done |
---|
| 1776 | |
---|
| 1777 | if [ ${status} -gt 0 ] ; then |
---|
| 1778 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 1779 | IGCM_debug_Exit "ncap2" |
---|
[657] | 1780 | fi |
---|
[16] | 1781 | |
---|
[657] | 1782 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
[16] | 1783 | } |
---|
| 1784 | |
---|
[375] | 1785 | function IGCM_sys_ncatted { |
---|
[657] | 1786 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 1787 | if ( $DEBUG_sys ) ; then |
---|
| 1788 | echo "IGCM_sys_ncatted :" $@ |
---|
| 1789 | fi |
---|
[714] | 1790 | |
---|
| 1791 | typeset NB_ESSAI DELAI status i |
---|
| 1792 | # number of tentative |
---|
| 1793 | NB_ESSAI=3 |
---|
| 1794 | # time delay between tentative |
---|
| 1795 | DELAI=2 |
---|
| 1796 | |
---|
| 1797 | i=0 |
---|
| 1798 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1799 | ncatted "$@" > out_rsync 2>&1 |
---|
| 1800 | status=$? |
---|
| 1801 | if [ ${status} -gt 0 ] ; then |
---|
| 1802 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 1803 | cat out_rsync |
---|
| 1804 | \rm out_rsync |
---|
| 1805 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1806 | sleep $DELAI |
---|
[714] | 1807 | else |
---|
| 1808 | \rm out_rsync |
---|
| 1809 | break |
---|
| 1810 | fi |
---|
| 1811 | (( i = i + 1 )) |
---|
| 1812 | done |
---|
| 1813 | |
---|
| 1814 | if [ ${status} -gt 0 ] ; then |
---|
| 1815 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 1816 | IGCM_debug_Exit "ncatted" |
---|
[657] | 1817 | fi |
---|
[16] | 1818 | |
---|
[657] | 1819 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[375] | 1820 | } |
---|
[16] | 1821 | |
---|
| 1822 | function IGCM_sys_ncbo { |
---|
[657] | 1823 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 1824 | if ( $DEBUG_sys ) ; then |
---|
| 1825 | echo "IGCM_sys_ncbo :" $@ |
---|
| 1826 | fi |
---|
[714] | 1827 | |
---|
| 1828 | typeset NB_ESSAI DELAI status i |
---|
| 1829 | # number of tentative |
---|
| 1830 | NB_ESSAI=3 |
---|
| 1831 | # time delay between tentative |
---|
| 1832 | DELAI=2 |
---|
| 1833 | |
---|
| 1834 | i=0 |
---|
| 1835 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1836 | ncbo $@ > out_rsync 2>&1 |
---|
| 1837 | status=$? |
---|
| 1838 | if [ ${status} -gt 0 ] ; then |
---|
| 1839 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 1840 | cat out_rsync |
---|
| 1841 | \rm out_rsync |
---|
| 1842 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1843 | sleep $DELAI |
---|
[714] | 1844 | else |
---|
| 1845 | \rm out_rsync |
---|
| 1846 | break |
---|
| 1847 | fi |
---|
| 1848 | (( i = i + 1 )) |
---|
| 1849 | done |
---|
| 1850 | |
---|
| 1851 | if [ ${status} -gt 0 ] ; then |
---|
| 1852 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 1853 | IGCM_debug_Exit "ncbo" |
---|
[657] | 1854 | fi |
---|
[16] | 1855 | |
---|
[657] | 1856 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[16] | 1857 | } |
---|
| 1858 | |
---|
| 1859 | function IGCM_sys_ncdiff { |
---|
[657] | 1860 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 1861 | if ( $DEBUG_sys ) ; then |
---|
| 1862 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 1863 | fi |
---|
[714] | 1864 | |
---|
| 1865 | typeset NB_ESSAI DELAI status i |
---|
| 1866 | # number of tentative |
---|
| 1867 | NB_ESSAI=3 |
---|
| 1868 | # time delay between tentative |
---|
| 1869 | DELAI=2 |
---|
| 1870 | |
---|
| 1871 | i=0 |
---|
| 1872 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1873 | ncdiff $@ > out_rsync 2>&1 |
---|
| 1874 | status=$? |
---|
| 1875 | if [ ${status} -gt 0 ] ; then |
---|
| 1876 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 1877 | cat out_rsync |
---|
| 1878 | \rm out_rsync |
---|
| 1879 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1880 | sleep $DELAI |
---|
[714] | 1881 | else |
---|
| 1882 | \rm out_rsync |
---|
| 1883 | break |
---|
| 1884 | fi |
---|
| 1885 | (( i = i + 1 )) |
---|
| 1886 | done |
---|
| 1887 | |
---|
| 1888 | if [ ${status} -gt 0 ] ; then |
---|
| 1889 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 1890 | IGCM_debug_Exit "ncdiff" |
---|
[657] | 1891 | fi |
---|
[16] | 1892 | |
---|
[657] | 1893 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[16] | 1894 | } |
---|
| 1895 | |
---|
| 1896 | function IGCM_sys_ncea { |
---|
[657] | 1897 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 1898 | if ( $DEBUG_sys ) ; then |
---|
| 1899 | echo "IGCM_sys_ncea :" $@ |
---|
| 1900 | fi |
---|
[714] | 1901 | |
---|
| 1902 | typeset NB_ESSAI DELAI status i |
---|
| 1903 | # number of tentative |
---|
| 1904 | NB_ESSAI=3 |
---|
| 1905 | # time delay between tentative |
---|
| 1906 | DELAI=2 |
---|
| 1907 | |
---|
| 1908 | i=0 |
---|
| 1909 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1910 | ncea $@ > out_rsync 2>&1 |
---|
| 1911 | status=$? |
---|
| 1912 | if [ ${status} -gt 0 ] ; then |
---|
| 1913 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 1914 | cat out_rsync |
---|
| 1915 | \rm out_rsync |
---|
| 1916 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1917 | sleep $DELAI |
---|
[714] | 1918 | else |
---|
| 1919 | \rm out_rsync |
---|
| 1920 | break |
---|
| 1921 | fi |
---|
| 1922 | (( i = i + 1 )) |
---|
| 1923 | done |
---|
| 1924 | |
---|
| 1925 | if [ ${status} -gt 0 ] ; then |
---|
| 1926 | echo "IGCM_sys_ncea : ncea error" |
---|
| 1927 | IGCM_debug_Exit "ncea" |
---|
[657] | 1928 | fi |
---|
[16] | 1929 | |
---|
[657] | 1930 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[16] | 1931 | } |
---|
| 1932 | |
---|
| 1933 | function IGCM_sys_ncecat { |
---|
[657] | 1934 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 1935 | if ( $DEBUG_sys ) ; then |
---|
| 1936 | echo "IGCM_sys_ncecat :" $@ |
---|
| 1937 | fi |
---|
[714] | 1938 | |
---|
| 1939 | typeset NB_ESSAI DELAI status i |
---|
| 1940 | # number of tentative |
---|
| 1941 | NB_ESSAI=3 |
---|
| 1942 | # time delay between tentative |
---|
| 1943 | DELAI=2 |
---|
| 1944 | |
---|
| 1945 | i=0 |
---|
| 1946 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1947 | ncecat $@ > out_rsync 2>&1 |
---|
| 1948 | status=$? |
---|
| 1949 | if [ ${status} -gt 0 ] ; then |
---|
| 1950 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 1951 | cat out_rsync |
---|
| 1952 | \rm out_rsync |
---|
| 1953 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1954 | sleep $DELAI |
---|
[714] | 1955 | else |
---|
| 1956 | \rm out_rsync |
---|
| 1957 | break |
---|
| 1958 | fi |
---|
| 1959 | (( i = i + 1 )) |
---|
| 1960 | done |
---|
| 1961 | |
---|
| 1962 | if [ ${status} -gt 0 ] ; then |
---|
| 1963 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 1964 | IGCM_debug_Exit "ncecat" |
---|
[657] | 1965 | fi |
---|
[16] | 1966 | |
---|
[657] | 1967 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[16] | 1968 | } |
---|
| 1969 | |
---|
| 1970 | function IGCM_sys_ncflint { |
---|
[657] | 1971 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 1972 | if ( $DEBUG_sys ) ; then |
---|
| 1973 | echo "IGCM_sys_ncflint :" $@ |
---|
| 1974 | fi |
---|
[714] | 1975 | |
---|
| 1976 | typeset NB_ESSAI DELAI status i |
---|
| 1977 | # number of tentative |
---|
| 1978 | NB_ESSAI=3 |
---|
| 1979 | # time delay between tentative |
---|
| 1980 | DELAI=2 |
---|
| 1981 | |
---|
| 1982 | i=0 |
---|
| 1983 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1984 | ncflint $@ > out_rsync 2>&1 |
---|
| 1985 | status=$? |
---|
| 1986 | if [ ${status} -gt 0 ] ; then |
---|
| 1987 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 1988 | cat out_rsync |
---|
| 1989 | \rm out_rsync |
---|
| 1990 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 1991 | sleep $DELAI |
---|
[714] | 1992 | else |
---|
| 1993 | \rm out_rsync |
---|
| 1994 | break |
---|
| 1995 | fi |
---|
| 1996 | (( i = i + 1 )) |
---|
| 1997 | done |
---|
| 1998 | |
---|
| 1999 | if [ ${status} -gt 0 ] ; then |
---|
| 2000 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2001 | IGCM_debug_Exit "ncflint" |
---|
[657] | 2002 | fi |
---|
[16] | 2003 | |
---|
[657] | 2004 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[16] | 2005 | } |
---|
| 2006 | |
---|
| 2007 | function IGCM_sys_ncks { |
---|
[657] | 2008 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2009 | if ( $DEBUG_sys ) ; then |
---|
| 2010 | echo "IGCM_sys_ncks :" $@ |
---|
| 2011 | fi |
---|
[714] | 2012 | |
---|
| 2013 | typeset NB_ESSAI DELAI status i |
---|
| 2014 | # number of tentative |
---|
| 2015 | NB_ESSAI=3 |
---|
| 2016 | # time delay between tentative |
---|
| 2017 | DELAI=2 |
---|
| 2018 | |
---|
| 2019 | i=0 |
---|
| 2020 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2021 | ncks $@ > out_rsync 2>&1 |
---|
| 2022 | status=$? |
---|
| 2023 | if [ ${status} -gt 0 ] ; then |
---|
| 2024 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2025 | cat out_rsync |
---|
| 2026 | \rm out_rsync |
---|
| 2027 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2028 | sleep $DELAI |
---|
[714] | 2029 | else |
---|
| 2030 | \rm out_rsync |
---|
| 2031 | break |
---|
| 2032 | fi |
---|
| 2033 | (( i = i + 1 )) |
---|
| 2034 | done |
---|
| 2035 | |
---|
| 2036 | if [ ${status} -gt 0 ] ; then |
---|
| 2037 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2038 | IGCM_debug_Exit "ncks" |
---|
[657] | 2039 | fi |
---|
[16] | 2040 | |
---|
[657] | 2041 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[16] | 2042 | } |
---|
| 2043 | |
---|
| 2044 | function IGCM_sys_ncpdq { |
---|
[657] | 2045 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2046 | if ( $DEBUG_sys ) ; then |
---|
| 2047 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2048 | fi |
---|
[714] | 2049 | |
---|
| 2050 | typeset NB_ESSAI DELAI status i |
---|
| 2051 | # number of tentative |
---|
| 2052 | NB_ESSAI=3 |
---|
| 2053 | # time delay between tentative |
---|
| 2054 | DELAI=2 |
---|
| 2055 | |
---|
| 2056 | i=0 |
---|
| 2057 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2058 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2059 | status=$? |
---|
| 2060 | if [ ${status} -gt 0 ] ; then |
---|
| 2061 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2062 | cat out_rsync |
---|
| 2063 | \rm out_rsync |
---|
| 2064 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2065 | sleep $DELAI |
---|
[714] | 2066 | else |
---|
| 2067 | \rm out_rsync |
---|
| 2068 | break |
---|
| 2069 | fi |
---|
| 2070 | (( i = i + 1 )) |
---|
| 2071 | done |
---|
| 2072 | |
---|
| 2073 | if [ ${status} -gt 0 ] ; then |
---|
| 2074 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2075 | IGCM_debug_Exit "ncpdq" |
---|
[657] | 2076 | fi |
---|
[16] | 2077 | |
---|
[657] | 2078 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[16] | 2079 | } |
---|
| 2080 | |
---|
| 2081 | function IGCM_sys_ncra { |
---|
[657] | 2082 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2083 | if ( $DEBUG_sys ) ; then |
---|
| 2084 | echo "IGCM_sys_ncra :" $@ |
---|
| 2085 | fi |
---|
[714] | 2086 | |
---|
| 2087 | typeset NB_ESSAI DELAI status i |
---|
| 2088 | # number of tentative |
---|
| 2089 | NB_ESSAI=3 |
---|
| 2090 | # time delay between tentative |
---|
| 2091 | DELAI=2 |
---|
| 2092 | |
---|
| 2093 | i=0 |
---|
| 2094 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2095 | ncra $@ > out_rsync 2>&1 |
---|
| 2096 | status=$? |
---|
| 2097 | if [ ${status} -gt 0 ] ; then |
---|
| 2098 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2099 | cat out_rsync |
---|
| 2100 | \rm out_rsync |
---|
| 2101 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2102 | sleep $DELAI |
---|
[714] | 2103 | else |
---|
| 2104 | \rm out_rsync |
---|
| 2105 | break |
---|
| 2106 | fi |
---|
| 2107 | (( i = i + 1 )) |
---|
| 2108 | done |
---|
| 2109 | |
---|
| 2110 | if [ ${status} -gt 0 ] ; then |
---|
| 2111 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2112 | IGCM_debug_Exit "ncra" |
---|
[657] | 2113 | fi |
---|
[16] | 2114 | |
---|
[657] | 2115 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[16] | 2116 | } |
---|
| 2117 | |
---|
| 2118 | function IGCM_sys_ncrcat { |
---|
[657] | 2119 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2120 | if ( $DEBUG_sys ) ; then |
---|
| 2121 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2122 | fi |
---|
[714] | 2123 | |
---|
| 2124 | typeset NB_ESSAI DELAI status i |
---|
| 2125 | # number of tentative |
---|
| 2126 | NB_ESSAI=3 |
---|
| 2127 | # time delay between tentative |
---|
| 2128 | DELAI=2 |
---|
| 2129 | |
---|
| 2130 | i=0 |
---|
| 2131 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2132 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2133 | status=$? |
---|
| 2134 | if [ ${status} -gt 0 ] ; then |
---|
| 2135 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2136 | cat out_rsync |
---|
| 2137 | \rm out_rsync |
---|
| 2138 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2139 | sleep $DELAI |
---|
[714] | 2140 | else |
---|
| 2141 | \rm out_rsync |
---|
| 2142 | break |
---|
| 2143 | fi |
---|
| 2144 | (( i = i + 1 )) |
---|
| 2145 | done |
---|
| 2146 | |
---|
| 2147 | if [ ${status} -gt 0 ] ; then |
---|
| 2148 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2149 | #IGCM_debug_Exit "ncrcat" |
---|
[657] | 2150 | fi |
---|
[16] | 2151 | |
---|
[657] | 2152 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[16] | 2153 | } |
---|
| 2154 | |
---|
| 2155 | function IGCM_sys_ncrename { |
---|
[657] | 2156 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2157 | if ( $DEBUG_sys ) ; then |
---|
| 2158 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2159 | fi |
---|
[714] | 2160 | |
---|
| 2161 | typeset NB_ESSAI DELAI status i |
---|
| 2162 | # number of tentative |
---|
| 2163 | NB_ESSAI=3 |
---|
| 2164 | # time delay between tentative |
---|
| 2165 | DELAI=2 |
---|
| 2166 | |
---|
| 2167 | i=0 |
---|
| 2168 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2169 | ncrename $@ > out_rsync 2>&1 |
---|
| 2170 | status=$? |
---|
| 2171 | if [ ${status} -gt 0 ] ; then |
---|
| 2172 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2173 | cat out_rsync |
---|
| 2174 | \rm out_rsync |
---|
| 2175 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2176 | sleep $DELAI |
---|
[714] | 2177 | else |
---|
| 2178 | \rm out_rsync |
---|
| 2179 | break |
---|
| 2180 | fi |
---|
| 2181 | (( i = i + 1 )) |
---|
| 2182 | done |
---|
| 2183 | |
---|
| 2184 | if [ ${status} -gt 0 ] ; then |
---|
| 2185 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2186 | IGCM_debug_Exit "ncrename" |
---|
[657] | 2187 | fi |
---|
[16] | 2188 | |
---|
[657] | 2189 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[16] | 2190 | } |
---|
| 2191 | |
---|
| 2192 | function IGCM_sys_ncwa { |
---|
[657] | 2193 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2194 | if ( $DEBUG_sys ) ; then |
---|
| 2195 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2196 | fi |
---|
[714] | 2197 | |
---|
| 2198 | typeset NB_ESSAI DELAI status i |
---|
| 2199 | # number of tentative |
---|
| 2200 | NB_ESSAI=3 |
---|
| 2201 | # time delay between tentative |
---|
| 2202 | DELAI=2 |
---|
| 2203 | |
---|
| 2204 | i=0 |
---|
| 2205 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2206 | ncwa $@ > out_rsync 2>&1 |
---|
| 2207 | status=$? |
---|
| 2208 | if [ ${status} -gt 0 ] ; then |
---|
| 2209 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2210 | cat out_rsync |
---|
| 2211 | \rm out_rsync |
---|
| 2212 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[800] | 2213 | sleep $DELAI |
---|
[714] | 2214 | else |
---|
| 2215 | \rm out_rsync |
---|
| 2216 | break |
---|
| 2217 | fi |
---|
| 2218 | (( i = i + 1 )) |
---|
| 2219 | done |
---|
| 2220 | |
---|
| 2221 | if [ ${status} -gt 0 ] ; then |
---|
| 2222 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2223 | IGCM_debug_Exit "ncwa" |
---|
[657] | 2224 | fi |
---|
[16] | 2225 | |
---|
[657] | 2226 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[16] | 2227 | } |
---|
| 2228 | |
---|
[284] | 2229 | ############################################################## |
---|
| 2230 | # CDO OPERATOR |
---|
| 2231 | |
---|
| 2232 | function IGCM_sys_cdo { |
---|
[657] | 2233 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
[714] | 2234 | if ( $DEBUG_sys ) ; then |
---|
| 2235 | echo "IGCM_sys_cdo :" $@ |
---|
| 2236 | fi |
---|
[284] | 2237 | |
---|
[714] | 2238 | typeset status |
---|
| 2239 | |
---|
| 2240 | \cdo $@ > out_rsync 2>&1 |
---|
| 2241 | status=$? |
---|
| 2242 | if [ ${status} -gt 0 ] ; then |
---|
| 2243 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2244 | cat out_rsync |
---|
| 2245 | \rm out_rsync |
---|
[284] | 2246 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[657] | 2247 | return 1 |
---|
| 2248 | else |
---|
| 2249 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2250 | return 0 |
---|
| 2251 | fi |
---|
[284] | 2252 | |
---|
[657] | 2253 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
[16] | 2254 | } |
---|