[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #======================================================================== |
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| 15 | function IGCM_comp_Initialize |
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| 16 | { |
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[544] | 17 | IGCM_debug_PushStack "IGCM_comp_Initialize" |
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[2] | 18 | |
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[778] | 19 | # Debug Print : |
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[544] | 20 | echo |
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| 21 | IGCM_debug_Print 1 "IGCM_comp_Initialize" |
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| 22 | echo |
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[2] | 23 | |
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[544] | 24 | typeset comp compname comptagname CompatibilityTag auxprint card_UserChoices first_option option i j |
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| 25 | for comp in ${config_ListOfComponents[*]} ; do |
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[2] | 26 | |
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[544] | 27 | # Define component |
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| 28 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 29 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 30 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[457] | 31 | |
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[615] | 32 | # Debug Print |
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| 33 | IGCM_debug_Print 1 "Initialize ${comp} : ${compname} component." |
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| 34 | |
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[544] | 35 | # Read libIGCM compatibility version in ${compname}.card |
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| 36 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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| 37 | IGCM_card_DefineVariableFromOption ${card} Compatibility libIGCM |
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[2] | 38 | |
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[778] | 39 | eval CompatibilityTag=\${${compname}_Compatibility_libIGCM} > /dev/null 2>&1 |
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[544] | 40 | if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then |
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| 41 | IGCM_debug_Exit "${compname}.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ." |
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| 42 | fi |
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[2] | 43 | |
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[544] | 44 | # Manage component executable |
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| 45 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp} |
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[2] | 46 | |
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[544] | 47 | # Read component Write Frequency in config.card |
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| 48 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} WriteFrequency |
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| 49 | # Debug Print : |
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| 50 | eval auxprint=\${config_${comp}_WriteFrequency} |
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| 51 | IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} " |
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| 52 | #2> /dev/null |
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[2] | 53 | |
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[544] | 54 | # Debug Print : |
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| 55 | IGCM_debug_Print 2 "Initialize following component library" |
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[522] | 56 | |
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[544] | 57 | # Source drivers in directory DRIVER if it exist |
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| 58 | # else source them from directory COMP |
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| 59 | if [ -d ${SUBMIT_DIR}/DRIVER ] ; then |
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| 60 | IGCM_debug_Print 2 ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 61 | # Source component library |
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| 62 | . ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 63 | else |
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| 64 | IGCM_debug_Print 2 ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 65 | # Source component library |
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| 66 | . ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 67 | fi |
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| 68 | IGCM_debug_Print 3 "With tag : ${comptagname}" |
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[2] | 69 | |
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[544] | 70 | # Debug Print |
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| 71 | IGCM_debug_Print 3 "Initialize ${comp} output directory." |
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[2] | 72 | |
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[544] | 73 | # Define ARCHIVED Dirs |
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| 74 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 75 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}} |
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[2] | 76 | |
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[544] | 77 | eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output |
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| 78 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O} |
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[2] | 79 | |
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[544] | 80 | eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart |
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| 81 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R} |
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[2] | 82 | |
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[544] | 83 | eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug |
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| 84 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D} |
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[2] | 85 | |
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[544] | 86 | eval R_OUT_${comp}_O_I=\${R_OUT_${comp}_O}/INS |
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| 87 | eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF |
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| 88 | eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA |
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| 89 | eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO |
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| 90 | eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE |
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| 91 | |
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| 92 | # Define BUFFERED Dirs |
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| 93 | eval R_BUF_${comp}=${R_BUFR}/${comp} |
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| 94 | eval IGCM_sys_Mkdir \${R_BUF_${comp}} |
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| 95 | |
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| 96 | eval R_BUF_${comp}_O=\${R_BUF_${comp}}/Output |
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| 97 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_O} |
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| 98 | |
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| 99 | eval R_BUF_${comp}_R=\${R_BUF_${comp}}/Restart |
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| 100 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_R} |
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| 101 | |
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| 102 | eval R_BUF_${comp}_D=\${R_BUF_${comp}}/Debug |
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| 103 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_D} |
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| 104 | |
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| 105 | eval R_BUF_${comp}_O_I=\${R_BUF_${comp}_O}/INS |
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| 106 | eval R_BUF_${comp}_O_H=\${R_BUF_${comp}_O}/HF |
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| 107 | eval R_BUF_${comp}_O_D=\${R_BUF_${comp}_O}/DA |
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| 108 | eval R_BUF_${comp}_O_M=\${R_BUF_${comp}_O}/MO |
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| 109 | eval R_BUF_${comp}_O_Y=\${R_BUF_${comp}_O}/YE |
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| 110 | |
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| 111 | # Read UserChoices section of component card |
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| 112 | IGCM_debug_Print 2 "DefineArrayFromSection : ${compname}_UserChoices ${card}" |
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| 113 | IGCM_card_DefineArrayFromSection ${card} UserChoices |
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| 114 | eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1 |
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| 115 | # If section is not empty we define corresponding variables |
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| 116 | if [ X${first_option} != X"Error:" ] ; then |
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| 117 | if [ X${card_UserChoices[0]} != X ] ; then |
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[778] | 118 | unset card_UserChoices |
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[544] | 119 | fi |
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| 120 | eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1 |
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| 121 | IGCM_debug_Print 3 "${compname}_UserChoices_values:" |
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| 122 | for option in ${card_UserChoices[*]} ; do |
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[778] | 123 | IGCM_card_DefineVariableFromOption ${card} UserChoices ${option} |
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| 124 | eval IGCM_debug_Print 3 "${option}=\${${compname}_UserChoices_${option}}" |
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[544] | 125 | done |
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| 126 | fi |
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| 127 | |
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| 128 | # Read and Build Output File stuff |
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| 129 | IGCM_debug_Print 2 "DefineArrayFromOption : ${compname}_OutputFiles ${card}" |
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| 130 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 131 | ListFilesName=${compname}_OutputFiles_List |
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| 132 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 133 | # |
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| 134 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 135 | # |
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| 136 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 137 | # |
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| 138 | # INITIALISATION |
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| 139 | # |
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| 140 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 141 | # |
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| 142 | i=2 |
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| 143 | # |
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| 144 | until [ $i -ge $NbFiles ]; do |
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[778] | 145 | # |
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| 146 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 147 | # |
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| 148 | if [ X${flag_post} != XNONE ] ; then |
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| 149 | # |
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[544] | 150 | # First of all |
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| 151 | # |
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[778] | 152 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| 153 | # |
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| 154 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 155 | # |
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| 156 | # variable option allready typeset above |
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| 157 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 158 | if [ ${option} = Seasonal ] ; then |
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| 159 | FoundSeasonal=true |
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| 160 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 161 | fi |
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| 162 | done |
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| 163 | # |
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| 164 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 165 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 166 | fi |
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| 167 | # |
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| 168 | if [ $( eval echo \${${compname}_${flag_post}_Seasonal} ) = ON ] ; then |
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| 169 | Seasonal=true |
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| 170 | fi |
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| 171 | |
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| 172 | # Dimension = vide si vieille card. |
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| 173 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars |
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| 174 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} Patches |
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| 175 | if [ X"$( eval echo \${${compname}_${flag_post}_TimeSeriesVars[*]} )" = X"Option not" ] ; then |
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| 176 | # New TimeSeriesVar description, with 2D, 3D and associate ChunckJob. |
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| 177 | ListDimension[0]=2D |
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| 178 | ListDimension[1]=3D |
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| 179 | TimeSeries=false |
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| 180 | iLoop=${#ListDimension[*]} |
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| 181 | j=0 |
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| 182 | until [ $j -ge ${iLoop} ]; do |
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| 183 | Dimension=${ListDimension[${j}]} |
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| 184 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} TimeSeriesVars${Dimension} |
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| 185 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} ChunckJob${Dimension} |
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[544] | 186 | # |
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[778] | 187 | # Time series WITHOUT chunk |
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| 188 | # |
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| 189 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 190 | if [ $( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 191 | IGCM_debug_Print 3 "${Dimension} time series activated for ${flag_post}" |
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| 192 | eval TimeSeries${Dimension}=true |
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| 193 | fi |
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| 194 | fi |
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| 195 | # |
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| 196 | # Time series WITH chunk |
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| 197 | # |
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| 198 | if [ ! $( eval echo \${${compname}_${flag_post}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 199 | chunck_size=$( eval echo \${${compname}_${flag_post}_ChunckJob${Dimension}} ) |
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| 200 | if [ ! ${chunck_size} = NONE ] && [ ! ${chunck_size} = OFF ] ; then |
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| 201 | IGCM_debug_Print 3 "${Dimension} time series activated with chunck for ${flag_post}" |
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| 202 | eval TimeSeriesChunck${Dimension}=true |
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| 203 | eval set +A CHUNCK${Dimension}_COMP \${CHUNCK${Dimension}_COMP[*]} ${comp} |
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| 204 | eval set +A CHUNCK${Dimension}_FLAG \${CHUNCK${Dimension}_FLAG[*]} ${i} |
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| 205 | eval set +A CHUNCK${Dimension}_NAME \${CHUNCK${Dimension}_NAME[*]} ${flag_post} |
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| 206 | eval set +A CHUNCK${Dimension}_SIZE \${CHUNCK${Dimension}_SIZE[*]} ${chunck_size} |
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| 207 | fi |
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| 208 | fi |
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| 209 | (( j=j+1 )) |
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| 210 | done |
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| 211 | else |
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| 212 | ListDimension[0]="" |
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| 213 | TimeSeries=true |
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| 214 | TimeSeries2D=false |
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| 215 | TimeSeries3D=false |
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| 216 | TimeSeriesChunck2D=false |
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| 217 | TimeSeriesChunck3D=false |
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| 218 | fi |
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| 219 | fi |
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| 220 | (( i=i+3 )) |
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[544] | 221 | done |
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| 222 | fi |
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| 223 | # Debug Print |
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| 224 | IGCM_debug_Print 3 "Initialize ${compname} with driver." |
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| 225 | # INIT component |
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| 226 | ${comp}_Initialize |
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| 227 | echo |
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| 228 | done |
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[2] | 229 | |
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[544] | 230 | IGCM_debug_PopStack "IGCM_comp_Initialize" |
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[2] | 231 | } |
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| 232 | |
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| 233 | #======================================================================= |
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| 234 | function IGCM_comp_PrepareDeletedFiles |
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| 235 | { |
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[544] | 236 | IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@ |
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[778] | 237 | |
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[544] | 238 | if [ X${2} != X. ] ; then |
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| 239 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1 |
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| 240 | else |
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| 241 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1 |
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| 242 | fi |
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[2] | 243 | |
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[544] | 244 | IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles" |
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[2] | 245 | } |
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| 246 | |
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| 247 | #======================================================================= |
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| 248 | function IGCM_comp_GetInputInitialStateFiles |
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| 249 | { |
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[544] | 250 | IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles" |
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[2] | 251 | |
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[544] | 252 | # Debug Print : |
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| 253 | echo |
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| 254 | IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles" |
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| 255 | echo |
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[2] | 256 | |
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[544] | 257 | # Only the first time step need InitialStateFiles |
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| 258 | # otherwise it's BoundaryConditions |
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| 259 | if ( ${FirstInitialize} ) ; then |
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| 260 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 261 | typeset file_in_ file_in file_out_ file_out do_init |
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| 262 | for comp in ${config_ListOfComponents[*]} ; do |
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| 263 | # Initialize |
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| 264 | do_init="y" |
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| 265 | # Do we need to bring initial state file for this component |
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| 266 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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[778] | 267 | eval do_init="n" |
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[544] | 268 | else |
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[778] | 269 | # Read component Restarts parameters |
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| 270 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 271 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 272 | if [ "${do_start}" = "y" ] ; then |
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| 273 | do_init="n" |
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| 274 | else |
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| 275 | do_init="y" |
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| 276 | fi |
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[544] | 277 | fi |
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[2] | 278 | |
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[544] | 279 | if [ "${do_init}" = "y" ] ; then |
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[778] | 280 | # Define component |
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| 281 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 282 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[2] | 283 | |
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[778] | 284 | # Debug Print : |
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| 285 | IGCM_debug_Print 3 "Initialisation files ${compname}" |
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[2] | 286 | |
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[778] | 287 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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[2] | 288 | |
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[778] | 289 | IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List |
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| 290 | ListFilesName=${compname}_InitialStateFiles_List |
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[2] | 291 | |
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[778] | 292 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 293 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 294 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 295 | (( i=0 )) |
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| 296 | until [ $i -ge $NbFiles ]; do |
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| 297 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 298 | eval file_in=${file_in_} |
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| 299 | (( i_ = i+1 )) |
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| 300 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 301 | eval file_out=${file_out_} |
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[2] | 302 | |
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[778] | 303 | IGCM_sys_IsFileArchived ${file_in} |
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| 304 | if [ $? = 0 ] ; then |
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| 305 | IGCM_sys_Get ${file_in} ${file_out} |
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| 306 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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| 307 | else |
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| 308 | IGCM_sys_Cp ${file_in} ${file_out} |
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| 309 | fi |
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| 310 | (( i=i+2 )) |
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| 311 | done |
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| 312 | fi |
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[544] | 313 | fi |
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| 314 | done |
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| 315 | fi |
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| 316 | IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles" |
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[2] | 317 | } |
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| 318 | |
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| 319 | #======================================================================= |
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[247] | 320 | # Definition of Smooth modulo function |
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| 321 | # usage : |
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| 322 | # IGCM_SmoothModulo StringModulo value |
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| 323 | # |
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| 324 | # StringModulo : A string of min max and modulo like definition of Scilab vectors. |
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| 325 | # [min]:[modulo:][max] |
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| 326 | # where : |
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| 327 | # [] value are optionnals; |
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| 328 | # empty min equal 1 |
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| 329 | # empty max equal infinity |
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| 330 | # modulo not given or empty equal 1 |
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| 331 | # empty string or just ':' equal always. |
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| 332 | # |
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| 333 | # value : the value to test with the definition |
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| 334 | # |
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| 335 | # return : true(1)/false(0) |
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| 336 | function IGCM_SmoothModulo |
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| 337 | { |
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[544] | 338 | IGCM_debug_PushStack "IGCM_SmoothModulo" |
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| 339 | typeset defVector ModValue |
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[247] | 340 | |
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[544] | 341 | eval set +A defVector -- $( echo "${1}" | \ |
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| 342 | gawk -F ':' '{print ($1 == "" ? 1 : $1) " " (NF==3 ? ($2 == "" ? 1 : $2) : 1) " " (NF==3 ? ($3 == "" ? -1 : $3) : ($2 == "" ? -1 : $2))}' ) |
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[247] | 343 | |
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[544] | 344 | # Save Smooth Min and Max. Needed to call IGCM_sys_Get when appropriate |
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| 345 | arr[1]=${defVector[0]} |
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| 346 | arr[2]=${defVector[2]} |
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[412] | 347 | |
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[544] | 348 | # Test limits : |
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| 349 | # ${defVector[0]} <= ${2} <= ${defVector[2]} |
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| 350 | # or ${defVector[2]} == -1 |
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| 351 | if ( [ ${2} -ge ${defVector[0]} ] && ( [ ${2} -le ${defVector[2]} ] || [ ${defVector[2]} -lt 0 ] ) ) ; then |
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| 352 | # Test modulo |
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| 353 | ModValue=$( expr \( ${2} - ${defVector[0]} \) % ${defVector[1]} ) |
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| 354 | if [ ${ModValue} -eq 0 ] ; then |
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| 355 | arr[3]=true |
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| 356 | echo ${arr[@]} |
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| 357 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 358 | return 1 |
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[247] | 359 | else |
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[544] | 360 | arr[3]=false |
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| 361 | echo ${arr[@]} |
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| 362 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 363 | return 0 |
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[247] | 364 | fi |
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[544] | 365 | else |
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| 366 | arr[3]=false |
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| 367 | echo ${arr[@]} |
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| 368 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 369 | return 0 |
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| 370 | fi |
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[247] | 371 | } |
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| 372 | |
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| 373 | #======================================================================= |
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| 374 | function IGCM_comp_GetInputSmoothFiles |
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| 375 | { |
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[544] | 376 | IGCM_debug_PushStack "IGCM_comp_GetInputSmoothFiles" |
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[247] | 377 | |
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[544] | 378 | # Debug Print : |
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| 379 | echo |
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| 380 | IGCM_debug_Print 1 "IGCM_comp_GetInputSmoothFiles" |
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| 381 | echo |
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[247] | 382 | |
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[544] | 383 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles j i i_ i__ |
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| 384 | typeset file_in_ file_in file_out_ file_out ret SmoothDef aux val |
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[247] | 385 | |
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[544] | 386 | for comp in ${config_ListOfComponents[*]} ; do |
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| 387 | # Define component |
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| 388 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 389 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[247] | 390 | |
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[544] | 391 | # Debug Print : |
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| 392 | IGCM_debug_Print 3 "Smooth files ${compname}" |
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[247] | 393 | |
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[544] | 394 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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[247] | 395 | |
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[544] | 396 | IGCM_card_DefineArrayFromOption ${card} SmoothFiles List |
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| 397 | ListFilesName=${compname}_SmoothFiles_List |
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| 398 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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[247] | 399 | |
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[544] | 400 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != X"Section" ] ) ; then |
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| 401 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[247] | 402 | |
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[544] | 403 | (( i=0 )) |
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| 404 | until [ $i -ge $NbFiles ]; do |
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[778] | 405 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 406 | eval file_in=${file_in_} |
---|
| 407 | (( i_ = i+1 )) |
---|
| 408 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 409 | eval file_out=${file_out_} |
---|
[247] | 410 | |
---|
[778] | 411 | # define CumulPeriod definition for this file |
---|
| 412 | (( i__ = i+2 )) |
---|
| 413 | eval SmoothDef=\${${ListFilesName}[$i__]} |
---|
| 414 | IGCM_debug_Print 3 " ${file_in} ${SmoothDef}" |
---|
| 415 | aux=$( IGCM_SmoothModulo ${SmoothDef} ${CumulPeriod} ) |
---|
| 416 | j=1 |
---|
| 417 | for val in ${aux} ; do |
---|
| 418 | [ ${j} -eq 1 ] && SmoothMin=${val} |
---|
| 419 | [ ${j} -eq 2 ] && SmoothMax=${val} |
---|
| 420 | [ ${j} -eq 3 ] && ret=${val} |
---|
| 421 | (( j=j+1 )) |
---|
| 422 | done |
---|
| 423 | [ ${SmoothMax} -eq -1 ] && SmoothMax=${CumulPeriod} |
---|
| 424 | if ( [ X${ret} = Xtrue ] || ( [ ${Period} -eq 1 ] && [ ${CumulPeriod} -ge ${SmoothMin} ] && [ ${CumulPeriod} -le ${SmoothMax} ] ) ) ; then |
---|
[548] | 425 | |
---|
[778] | 426 | IGCM_sys_IsFileArchived ${file_in} |
---|
| 427 | if [ $? = 0 ] ; then |
---|
| 428 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 429 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 430 | else |
---|
| 431 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 432 | fi |
---|
| 433 | fi |
---|
| 434 | (( i=i+3 )) |
---|
[544] | 435 | done |
---|
| 436 | fi |
---|
| 437 | done |
---|
[778] | 438 | |
---|
[544] | 439 | IGCM_debug_PopStack "IGCM_comp_GetInputSmoothFiles" |
---|
[247] | 440 | } |
---|
| 441 | |
---|
| 442 | #======================================================================= |
---|
[2] | 443 | function IGCM_comp_GetInputBoundaryFiles |
---|
| 444 | { |
---|
[544] | 445 | IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles" |
---|
[2] | 446 | |
---|
[544] | 447 | # Debug Print : |
---|
| 448 | echo |
---|
| 449 | IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles" |
---|
| 450 | echo |
---|
[2] | 451 | |
---|
[544] | 452 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
| 453 | typeset file_in_ file_in file_out_ file_out |
---|
[2] | 454 | |
---|
[544] | 455 | if [ ${Period} = 1 ]; then |
---|
| 456 | ListFixBoundary=" " |
---|
| 457 | fi |
---|
[2] | 458 | |
---|
[544] | 459 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[2] | 460 | |
---|
[544] | 461 | # Define component |
---|
| 462 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 463 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 464 | |
---|
[544] | 465 | # Debug Print : |
---|
| 466 | IGCM_debug_Print 3 "Boundary files ${compname}" |
---|
[2] | 467 | |
---|
[544] | 468 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 469 | |
---|
[544] | 470 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List |
---|
| 471 | ListFilesName=${compname}_BoundaryFiles_List |
---|
| 472 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 473 | |
---|
[544] | 474 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 475 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 476 | |
---|
[544] | 477 | (( i=0 )) |
---|
| 478 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 479 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 480 | eval file_in=${file_in_} |
---|
| 481 | (( i_ = i+1 )) |
---|
| 482 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 483 | eval file_out=${file_out_} |
---|
[2] | 484 | |
---|
[778] | 485 | IGCM_sys_IsFileArchived ${file_in} |
---|
| 486 | if [ $? = 0 ] ; then |
---|
| 487 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 488 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 489 | else |
---|
| 490 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 491 | fi |
---|
[2] | 492 | |
---|
[778] | 493 | (( i=i+2 )) |
---|
[544] | 494 | done |
---|
| 495 | fi |
---|
[2] | 496 | |
---|
[544] | 497 | # Get non deleted files |
---|
| 498 | if [ ${Period} = 1 ]; then |
---|
[2] | 499 | |
---|
[544] | 500 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel |
---|
| 501 | ListFilesName=${compname}_BoundaryFiles_ListNonDel |
---|
| 502 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[778] | 503 | |
---|
[544] | 504 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
[778] | 505 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 506 | |
---|
[778] | 507 | (( i=0 )) |
---|
| 508 | until [ $i -ge $NbFiles ]; do |
---|
| 509 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 510 | eval file_in=${file_in_} |
---|
| 511 | (( i_ = i+1 )) |
---|
| 512 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 513 | eval file_out=${file_out_} |
---|
[2] | 514 | |
---|
[778] | 515 | IGCM_sys_IsFileArchived ${file_in} |
---|
| 516 | if [ $? = 0 ] ; then |
---|
| 517 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 518 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 519 | else |
---|
| 520 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 521 | fi |
---|
[2] | 522 | |
---|
[778] | 523 | if [ X${file_out} != X. ] ; then |
---|
| 524 | ListFixBoundary=${ListFixBoundary}" "${file_out} |
---|
| 525 | else |
---|
| 526 | ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} ) |
---|
| 527 | fi |
---|
| 528 | |
---|
| 529 | (( i=i+2 )) |
---|
| 530 | done |
---|
[544] | 531 | fi |
---|
| 532 | fi |
---|
| 533 | done |
---|
[778] | 534 | |
---|
[544] | 535 | IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles" |
---|
[2] | 536 | } |
---|
| 537 | |
---|
| 538 | #======================================================================= |
---|
| 539 | function IGCM_comp_DelFixeBoundaryFiles |
---|
| 540 | { |
---|
[544] | 541 | IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
[2] | 542 | |
---|
[544] | 543 | # Debug Print : |
---|
| 544 | echo |
---|
| 545 | IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles" |
---|
| 546 | echo |
---|
[2] | 547 | |
---|
[544] | 548 | ls -l ${ListFixBoundary} |
---|
| 549 | rm -f ${ListFixBoundary} |
---|
[2] | 550 | |
---|
[544] | 551 | IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
[2] | 552 | } |
---|
| 553 | |
---|
| 554 | #======================================================================= |
---|
| 555 | function IGCM_comp_GetInputParametersFiles |
---|
| 556 | { |
---|
[544] | 557 | IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles" |
---|
[2] | 558 | |
---|
[544] | 559 | # Debug Print : |
---|
| 560 | echo |
---|
| 561 | IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles" |
---|
| 562 | echo |
---|
[2] | 563 | |
---|
[544] | 564 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out |
---|
| 565 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 566 | # Define component |
---|
| 567 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 568 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 569 | |
---|
[544] | 570 | # Debug Print : |
---|
| 571 | IGCM_debug_Print 3 "Parameters ${compname}" |
---|
[2] | 572 | |
---|
[778] | 573 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 574 | |
---|
[544] | 575 | IGCM_card_DefineArrayFromOption ${card} ParametersFiles List |
---|
| 576 | ListFilesName=${compname}_ParametersFiles_List |
---|
| 577 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 578 | |
---|
[544] | 579 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 580 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 581 | |
---|
[544] | 582 | (( i=0 )) |
---|
| 583 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 584 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 585 | eval file_in=${file_in_} |
---|
| 586 | (( i_ = i+1 )) |
---|
| 587 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 588 | eval file_out=${file_out_} |
---|
[2] | 589 | |
---|
[778] | 590 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 591 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[2] | 592 | |
---|
[778] | 593 | (( i=i+2 )) |
---|
[544] | 594 | done |
---|
| 595 | fi |
---|
| 596 | done |
---|
[2] | 597 | |
---|
[544] | 598 | IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles" |
---|
[2] | 599 | } |
---|
| 600 | |
---|
| 601 | #======================================================================= |
---|
| 602 | function IGCM_comp_GetInputRestartFiles |
---|
| 603 | { |
---|
[544] | 604 | IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles" |
---|
[2] | 605 | |
---|
[544] | 606 | # Debug Print : |
---|
| 607 | echo |
---|
| 608 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles" |
---|
| 609 | echo |
---|
[2] | 610 | |
---|
[590] | 611 | typeset Date_tmp Date_r Path_r do_start CompOldName Path_OUT Path_BUF |
---|
| 612 | typeset Buffered Archived Tared PotentialTarFile IsMatching TarFileFound |
---|
[544] | 613 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
| 614 | typeset file_in file_out file_in_ file_out_ file_in_Name |
---|
| 615 | typeset -Z4 j4 |
---|
[2] | 616 | |
---|
[778] | 617 | IsMatching="" |
---|
| 618 | |
---|
[544] | 619 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 620 | # Define component |
---|
| 621 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 622 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 623 | # |
---|
| 624 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 625 | # |
---|
| 626 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 627 | ListFilesName=${compname}_RestartFiles_List |
---|
| 628 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 629 | |
---|
[544] | 630 | # Debug Print : |
---|
| 631 | IGCM_debug_Print 3 "restart ${compname}" |
---|
[2] | 632 | |
---|
[544] | 633 | if ( ${FirstInitialize} ) ; then |
---|
[2] | 634 | |
---|
[544] | 635 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
---|
[778] | 636 | eval config_${comp}_Restart="y" |
---|
| 637 | eval config_${comp}_RestartDate=${config_Restarts_RestartDate} |
---|
| 638 | eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName} |
---|
| 639 | eval config_${comp}_RestartPath=${config_Restarts_RestartPath} |
---|
| 640 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
| 641 | eval CompOldName=${comp} |
---|
[544] | 642 | else |
---|
[778] | 643 | # Read component Restarts parameters |
---|
| 644 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
---|
| 645 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
[2] | 646 | |
---|
[778] | 647 | if [ "${do_start}" = "y" ] ; then |
---|
| 648 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate |
---|
| 649 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName |
---|
| 650 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath |
---|
| 651 | else |
---|
| 652 | eval config_${comp}_RestartDate=-1 |
---|
| 653 | eval config_${comp}_RestartJobName=${NULL_STR} |
---|
| 654 | eval config_${comp}_RestartPath=${NULL_STR} |
---|
| 655 | fi |
---|
| 656 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} OldName |
---|
| 657 | eval CompOldName=\${config_${comp}_OldName} |
---|
| 658 | if [ X${CompOldName} = X ] ; then |
---|
| 659 | eval CompOldName=${comp} |
---|
| 660 | fi |
---|
| 661 | |
---|
| 662 | # Reinitialize IsMatching to allow searching for a different tar file for each component. |
---|
| 663 | IsMatching="" |
---|
| 664 | TarFileFound="" |
---|
[544] | 665 | fi |
---|
[2] | 666 | |
---|
[544] | 667 | if [ "${do_start}" = "y" ] ; then |
---|
[2] | 668 | |
---|
[672] | 669 | # Restore Restarts files |
---|
| 670 | #----------------------- |
---|
[778] | 671 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 672 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 673 | |
---|
[778] | 674 | (( i=1 )) |
---|
| 675 | until [ $i -gt $NbFiles ]; do |
---|
| 676 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 677 | eval file_in=${file_in_} |
---|
| 678 | (( i_ = i+1 )) |
---|
| 679 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 680 | eval file_out=${file_out_} |
---|
| 681 | |
---|
| 682 | eval Date_tmp=\${config_${comp}_RestartDate} |
---|
| 683 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} ) |
---|
[672] | 684 | # will be re-use |
---|
| 685 | eval RestartPath=\${config_${comp}_RestartPath} |
---|
| 686 | eval RestartJobName=\${config_${comp}_RestartJobName} |
---|
| 687 | # |
---|
[778] | 688 | Path_r=${RestartPath}/${RestartJobName}/${CompOldName}/Restart |
---|
| 689 | file_in_Name=${RestartJobName}_${Date_r}_${file_in} |
---|
[2] | 690 | |
---|
[778] | 691 | extension_in=$( echo ${file_in_Name##*.} ) |
---|
| 692 | extension_out=$( echo ${file_out##*.} ) |
---|
[672] | 693 | |
---|
[778] | 694 | generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} ) |
---|
| 695 | generic_restart_file_name_out=$( basename ${file_out} .${extension_out} ) |
---|
[2] | 696 | |
---|
[778] | 697 | Path_OUT=${Path_r}/${generic_restart_file_name_in} |
---|
| 698 | |
---|
[672] | 699 | if [ $( IGCM_sys_TestFileBuffer ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[778] | 700 | IGCM_debug_Print 3 "Buffered restart" |
---|
| 701 | Buffered=true |
---|
| 702 | Archived=false |
---|
| 703 | Tared=false |
---|
| 704 | nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_OUT}_????.${extension_in}) |
---|
[672] | 705 | elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[778] | 706 | IGCM_debug_Print 3 "Archived restart" |
---|
| 707 | Buffered=false |
---|
| 708 | Archived=true |
---|
| 709 | Tared=false |
---|
| 710 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in}) |
---|
[672] | 711 | else |
---|
| 712 | IGCM_debug_Print 3 "Tared restart" |
---|
[778] | 713 | Buffered=false |
---|
| 714 | Archived=false |
---|
| 715 | Tared=true |
---|
[672] | 716 | # Look after the tar file we want if we did not found it already |
---|
[778] | 717 | if [ X${IsMatching} = X ] ; then |
---|
| 718 | for PotentialTarFile in $( find ${RestartPath}/${RestartJobName}/RESTART -name "${RestartJobName}_*_restart.tar" -print ) ; do |
---|
| 719 | IsMatching=$( echo ${PotentialTarFile##*/} | \ |
---|
| 720 | sed "s:^${RestartJobName}_::" | \ |
---|
| 721 | sed "s:\.restart\.tar$::" | \ |
---|
| 722 | gawk -F_ -v restartdate=${Date_r} \ |
---|
| 723 | '{if (($1 < restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' ) |
---|
| 724 | if [ ! X${IsMatching} = X ] ; then |
---|
| 725 | TarFileFound=${PotentialTarFile} |
---|
| 726 | break |
---|
| 727 | fi |
---|
| 728 | done |
---|
| 729 | fi |
---|
[672] | 730 | IGCM_debug_Print 1 "tar xvf ${TarFileFound} ${comp}_${generic_restart_file_name_in}*.${extension_in}" |
---|
[778] | 731 | tar xvf ${TarFileFound} ${comp}_${generic_restart_file_name_in}*.${extension_in} |
---|
| 732 | nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} ) |
---|
| 733 | fi |
---|
[672] | 734 | |
---|
| 735 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
[778] | 736 | j=0 |
---|
| 737 | until [ $j -ge ${nb_restart_file} ]; do |
---|
| 738 | j4=${j} |
---|
| 739 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 740 | IGCM_sys_GetBuffer ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 741 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 742 | IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 743 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 744 | IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 745 | fi |
---|
| 746 | (( j=j+1 )) |
---|
| 747 | done |
---|
[740] | 748 | |
---|
| 749 | if [ X${NUM_PROC_OCE} != X ] ; then |
---|
| 750 | if [ ${NUM_PROC_OCE} -ne ${nb_restart_file} ] ; then |
---|
| 751 | IGCM_sys_rebuild ${generic_restart_file_name_out}.${extension_out} ${generic_restart_file_name_out}_????.${extension_out} |
---|
| 752 | IGCM_sys_Rm ${generic_restart_file_name_out}_????.${extension_out} |
---|
| 753 | fi |
---|
| 754 | fi |
---|
[778] | 755 | else |
---|
| 756 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 757 | IGCM_sys_GetBuffer ${Path_r}/${file_in_Name} ${file_out} |
---|
| 758 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 759 | IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out} |
---|
| 760 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 761 | IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out} |
---|
| 762 | fi |
---|
| 763 | fi |
---|
| 764 | (( i=i+3 )) |
---|
| 765 | done |
---|
[672] | 766 | |
---|
[778] | 767 | else |
---|
| 768 | if [ X${FileName0} != XNONE ] ; then |
---|
| 769 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 770 | else |
---|
| 771 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 772 | fi |
---|
| 773 | fi |
---|
[544] | 774 | fi |
---|
| 775 | elif [ ${Period} -eq 1 ] ; then |
---|
| 776 | # if not FirstInitialize and first loop of this job |
---|
[2] | 777 | |
---|
[544] | 778 | # Restore Restarts files |
---|
| 779 | #----------------------- |
---|
| 780 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
[778] | 781 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 782 | |
---|
[778] | 783 | (( i=1 )) |
---|
| 784 | until [ $i -gt $NbFiles ]; do |
---|
| 785 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 786 | eval file_in=${file_in_} |
---|
| 787 | (( i_ = i+1 )) |
---|
| 788 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 789 | eval file_out=${file_out_} |
---|
[2] | 790 | |
---|
[778] | 791 | file_in_Name=${run_Configuration_OldPrefix}_${file_in} |
---|
[662] | 792 | |
---|
[778] | 793 | extension_in=$( echo ${file_in_Name##*.} ) |
---|
| 794 | extension_out=$( echo ${file_out##*.} ) |
---|
[67] | 795 | |
---|
[778] | 796 | generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} ) |
---|
| 797 | generic_restart_file_name_out=$( basename ${file_out} .${extension_out} ) |
---|
| 798 | |
---|
| 799 | eval Path_BUF=\${R_BUF_${comp}_R}/${generic_restart_file_name_in} |
---|
| 800 | eval Path_OUT=\${R_OUT_${comp}_R}/${generic_restart_file_name_in} |
---|
| 801 | |
---|
[662] | 802 | if [ $( IGCM_sys_TestFileBuffer ${Path_BUF}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[778] | 803 | IGCM_debug_Print 3 "Buffered restart" |
---|
| 804 | Buffered=true |
---|
| 805 | Archived=false |
---|
| 806 | Tared=false |
---|
| 807 | nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_BUF}_????.${extension_in}) |
---|
[672] | 808 | elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[778] | 809 | IGCM_debug_Print 3 "Archived restart" |
---|
| 810 | Buffered=false |
---|
| 811 | Archived=true |
---|
| 812 | Tared=false |
---|
| 813 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in}) |
---|
| 814 | else |
---|
| 815 | IGCM_debug_Print 3 "Tared restart" |
---|
| 816 | Buffered=false |
---|
| 817 | Archived=false |
---|
| 818 | Tared=true |
---|
| 819 | # Look after the tar file we want if we did not found it already |
---|
| 820 | if [ X${IsMatching} = X ] ; then |
---|
| 821 | for PotentialTarFile in $( find ${R_SAVE}/RESTART -name "${config_UserChoices_JobName}_*_restart.tar" -print ) ; do |
---|
| 822 | IsMatching=$( echo ${PotentialTarFile##*/} | sed "s:^${config_UserChoices_JobName}_::" | sed "s:\.restart\.tar$::" | gawk -F_ -v restartdate=${LastPeriodDateEnd} '{if (($1 < restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' ) |
---|
| 823 | if [ ! X${IsMatching} = X ] ; then |
---|
| 824 | TarFileFound=${PotentialTarFile} |
---|
| 825 | break |
---|
| 826 | fi |
---|
| 827 | done |
---|
| 828 | fi |
---|
| 829 | tar xvf ${TarFileFound} ${comp}_${generic_restart_file_name_in}*.${extension_in} |
---|
| 830 | nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} ) |
---|
| 831 | fi |
---|
[41] | 832 | |
---|
[778] | 833 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 834 | j=0 |
---|
| 835 | until [ $j -ge ${nb_restart_file} ]; do |
---|
| 836 | j4=${j} |
---|
| 837 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 838 | IGCM_sys_GetBuffer ${Path_BUF}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 839 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 840 | IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 841 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 842 | IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 843 | fi |
---|
| 844 | (( j=j+1 )) |
---|
| 845 | done |
---|
| 846 | else |
---|
| 847 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 848 | eval IGCM_sys_GetBuffer \${R_BUF_${comp}_R}/${file_in_Name} ${file_out} |
---|
| 849 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 850 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out} |
---|
| 851 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 852 | IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out} |
---|
| 853 | fi |
---|
| 854 | fi |
---|
| 855 | (( i=i+3 )) |
---|
| 856 | done |
---|
[544] | 857 | else |
---|
[778] | 858 | if [ X${FileName0} != XNONE ] ; then |
---|
| 859 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 860 | else |
---|
| 861 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 862 | fi |
---|
[544] | 863 | fi |
---|
[420] | 864 | fi |
---|
[544] | 865 | done |
---|
[420] | 866 | |
---|
[544] | 867 | NbFiles=$( ls * 2> /dev/null | wc -l ) |
---|
| 868 | if [ ${NbFiles} -gt 0 ] ; then |
---|
| 869 | IGCM_sys_Chmod u+rw * |
---|
| 870 | fi |
---|
| 871 | |
---|
| 872 | IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles" |
---|
[2] | 873 | } |
---|
| 874 | |
---|
| 875 | #======================================================================= |
---|
[269] | 876 | function IGCM_comp_PeriodStart |
---|
| 877 | { |
---|
[544] | 878 | IGCM_debug_PushStack "IGCM_comp_PeriodStart" |
---|
[269] | 879 | |
---|
[544] | 880 | # Debug Print : |
---|
| 881 | echo |
---|
| 882 | IGCM_debug_Print 1 "IGCM_comp_PeriodStart" |
---|
| 883 | echo |
---|
[269] | 884 | |
---|
[544] | 885 | typeset ExeNameIn ExeNameOut |
---|
| 886 | typeset comp compname comptagname |
---|
| 887 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 888 | # Define component |
---|
| 889 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 890 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[269] | 891 | |
---|
[544] | 892 | # Copy executable for this component |
---|
| 893 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 894 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[269] | 895 | |
---|
[544] | 896 | # Debug Print |
---|
| 897 | IGCM_debug_Print 3 "PeriodStart ${compname} Driver Function (if any)." |
---|
| 898 | # UPDATE component |
---|
| 899 | ${comp}_PeriodStart 2> /dev/null |
---|
[269] | 900 | |
---|
[544] | 901 | done |
---|
[269] | 902 | |
---|
[544] | 903 | IGCM_debug_PopStack "IGCM_comp_PeriodStart" |
---|
[269] | 904 | } |
---|
| 905 | |
---|
| 906 | #======================================================================= |
---|
[2] | 907 | function IGCM_comp_Update |
---|
| 908 | { |
---|
[544] | 909 | IGCM_debug_PushStack "IGCM_comp_Update" |
---|
[2] | 910 | |
---|
| 911 | # Debug Print : |
---|
[544] | 912 | echo |
---|
| 913 | IGCM_debug_Print 1 "IGCM_comp_Update" |
---|
| 914 | echo |
---|
[2] | 915 | |
---|
[544] | 916 | typeset ExeNameIn ExeNameOut |
---|
| 917 | typeset comp compname comptagname |
---|
| 918 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 919 | # Define component |
---|
| 920 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 921 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 922 | |
---|
[544] | 923 | # Copy executable for this component |
---|
| 924 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 925 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[151] | 926 | |
---|
[622] | 927 | # If missing executable and DRYRUN is set to 0 or 1 then stop! |
---|
| 928 | if [ ${DRYRUN} -le 1 ] && [ X${ExeNameIn} != X\"\" ] && [ ! -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 929 | IGCM_debug_Exit "IGCM_comp_Update missing executable ${ExeNameIn}" |
---|
[778] | 930 | fi |
---|
[236] | 931 | |
---|
[544] | 932 | if [ ${Period} -eq 1 ] && [ -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 933 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 934 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 935 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 936 | fi |
---|
| 937 | elif [ -f ${R_EXE}/${ExeNameIn} ] && [ ! -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 938 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 939 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 940 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 941 | fi |
---|
| 942 | fi |
---|
[2] | 943 | |
---|
[544] | 944 | # Debug Print |
---|
| 945 | IGCM_debug_Print 1 "Update ${compname} Parameter Files." |
---|
| 946 | # UPDATE component |
---|
| 947 | ${comp}_Update |
---|
[2] | 948 | |
---|
[544] | 949 | done |
---|
[2] | 950 | |
---|
[544] | 951 | IGCM_debug_PopStack "IGCM_comp_Update" |
---|
[2] | 952 | } |
---|
| 953 | |
---|
| 954 | #======================================================================= |
---|
| 955 | function IGCM_comp_Finalize |
---|
| 956 | { |
---|
[544] | 957 | IGCM_debug_PushStack "IGCM_comp_Finalize" |
---|
[2] | 958 | |
---|
[544] | 959 | # Debug Print : |
---|
| 960 | echo |
---|
| 961 | IGCM_debug_Print 1 "IGCM_comp_Finalize" |
---|
| 962 | echo |
---|
[2] | 963 | |
---|
[544] | 964 | typeset ListTextName TextName0 |
---|
| 965 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive |
---|
| 966 | typeset i i_ file_in file_in_ file_out file_out_ file_outin file_outin_ generic_file_name nb_rebuild_file |
---|
| 967 | typeset -Z4 j4 |
---|
| 968 | typeset list_file nlist_file |
---|
| 969 | typeset compactoutputs |
---|
[429] | 970 | |
---|
[544] | 971 | compactoutputs=false |
---|
| 972 | if [ X${JobType} != XRUN ] ; then |
---|
| 973 | compactoutputs=true |
---|
| 974 | elif [ X${config_UserChoices_CompactText} != Xn ] ; then |
---|
| 975 | compactoutputs=true |
---|
| 976 | fi |
---|
[433] | 977 | |
---|
[544] | 978 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 979 | # Define component |
---|
| 980 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 981 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 982 | |
---|
[544] | 983 | # Debug Print |
---|
| 984 | IGCM_debug_Print 1 "Finalize ${comp} : ${compname} component." |
---|
| 985 | # FINALIZE component |
---|
| 986 | ${comp}_Finalize |
---|
[2] | 987 | |
---|
[778] | 988 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 989 | |
---|
[544] | 990 | # Save Restarts files |
---|
| 991 | #-------------------- |
---|
| 992 | IGCM_debug_Print 2 "Save Restart files for ${comp} : ${compname} component." |
---|
| 993 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 994 | ListFilesName=${compname}_RestartFiles_List |
---|
| 995 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[778] | 996 | |
---|
[544] | 997 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 998 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[778] | 999 | |
---|
[544] | 1000 | (( i=0 )) |
---|
| 1001 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 1002 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 1003 | eval file_in=${file_in_} |
---|
[2] | 1004 | |
---|
[778] | 1005 | (( i_ = i+1 )) |
---|
| 1006 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1007 | eval file_out=${file_out_} |
---|
[151] | 1008 | |
---|
[778] | 1009 | (( i_ = i+2 )) |
---|
| 1010 | eval file_outin_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1011 | eval file_outin=${file_outin_} |
---|
[151] | 1012 | |
---|
[778] | 1013 | generic_restart_file_name_in=$( basename ${file_in} .nc ) |
---|
| 1014 | generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc ) |
---|
| 1015 | generic_restart_file_name_outin=$( basename ${file_outin} .nc ) |
---|
[2] | 1016 | |
---|
[778] | 1017 | nb_restart_file=$( ls ${generic_restart_file_name_in}_????.nc 2>/dev/null | wc -l ) |
---|
| 1018 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
| 1019 | j=0 |
---|
| 1020 | until [ $j -ge ${nb_restart_file} ]; do |
---|
| 1021 | j4=${j} |
---|
| 1022 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1023 | eval IGCM_sys_PutBuffer_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_BUF_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
| 1024 | else |
---|
| 1025 | eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
| 1026 | fi |
---|
| 1027 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 1028 | if ( ${ExitFlag} ) ; then |
---|
| 1029 | echo "IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc not executed." |
---|
| 1030 | else |
---|
| 1031 | IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc |
---|
| 1032 | fi |
---|
| 1033 | fi |
---|
| 1034 | (( j=j+1 )) |
---|
| 1035 | done |
---|
| 1036 | else |
---|
| 1037 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1038 | eval IGCM_sys_PutBuffer_Rest ${file_in} \${R_BUF_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
| 1039 | else |
---|
| 1040 | eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
| 1041 | fi |
---|
| 1042 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 1043 | if ( ${ExitFlag} ) ; then |
---|
| 1044 | echo "IGCM_sys_Mv ${file_in} ${file_outin} not executed." |
---|
| 1045 | else |
---|
| 1046 | IGCM_sys_Mv ${file_in} ${file_outin} |
---|
| 1047 | fi |
---|
| 1048 | fi |
---|
| 1049 | fi |
---|
| 1050 | |
---|
| 1051 | (( i=i+3 )) |
---|
[544] | 1052 | done |
---|
| 1053 | else |
---|
| 1054 | if [ X${FileName0} != XNONE ] ; then |
---|
[778] | 1055 | IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}." |
---|
[544] | 1056 | else |
---|
[778] | 1057 | IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}." |
---|
[544] | 1058 | fi |
---|
| 1059 | fi |
---|
[2] | 1060 | |
---|
[544] | 1061 | # Save Output files |
---|
| 1062 | #------------------ |
---|
| 1063 | IGCM_debug_Print 2 "Save Output files for ${comp} : ${compname} component." |
---|
| 1064 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 1065 | ListFilesName=${compname}_OutputFiles_List |
---|
| 1066 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 1067 | |
---|
[544] | 1068 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 1069 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[149] | 1070 | |
---|
[544] | 1071 | (( i=0 )) |
---|
| 1072 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 1073 | SaveOnArchive=true |
---|
| 1074 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 1075 | eval file_in=${file_in_} |
---|
| 1076 | (( i_ = i+1 )) |
---|
| 1077 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1078 | eval file_out=${file_out_} |
---|
| 1079 | # |
---|
| 1080 | # Override file_out path remplacing R_SAVE by R_BUFR |
---|
| 1081 | # |
---|
| 1082 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1083 | file_out=$( echo $file_out | sed "s:^$R_SAVE:$R_BUFR:" ) |
---|
| 1084 | fi |
---|
| 1085 | # |
---|
| 1086 | # Not necessarily the best option. /!\ Potential side effects /!\ |
---|
| 1087 | # |
---|
| 1088 | (( i_ = i+2 )) |
---|
| 1089 | eval flag_post=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1090 | # |
---|
| 1091 | generic_file_name=$( basename ${file_in} .nc ) |
---|
| 1092 | nb_rebuild_file=$( ls | grep "^${generic_file_name}_[0-9]*.nc" | wc -l ) |
---|
| 1093 | # |
---|
| 1094 | if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then |
---|
| 1095 | IGCM_debug_Print 2 "Parallelism with 1 process. Rebuilding ${file_in} not needed" |
---|
| 1096 | IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in} |
---|
| 1097 | elif [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 1098 | IGCM_debug_Print 2 "Parallelism detected rebuilding ${file_in} is needed" |
---|
| 1099 | if [ X${AsynchronousRebuild} = Xfalse ] ; then |
---|
| 1100 | IGCM_debug_Print 2 "Rebuilding ${file_in} online" |
---|
| 1101 | IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc |
---|
| 1102 | else |
---|
| 1103 | IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}" |
---|
| 1104 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 1105 | IGCM_sys_Mv ${generic_file_name}_????.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
[544] | 1106 | |
---|
[778] | 1107 | # Prepare headers for the shell dedicated to offline rebuild |
---|
| 1108 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
| 1109 | if [ $DRYRUN -le 1 ]; then |
---|
| 1110 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1111 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1112 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1113 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1114 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1115 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1116 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1117 | echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1118 | echo "export R_BUFR=${R_BUFR} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[694] | 1119 | echo "export R_OUT_KSH=${R_OUT_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1120 | echo "export R_BUF_KSH=${R_BUF_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[749] | 1121 | echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1122 | echo "export config_UserChoices_SpaceName=${config_UserChoices_SpaceName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[778] | 1123 | fi |
---|
| 1124 | fi |
---|
| 1125 | # Prepare the shell dedicated to offline rebuild |
---|
| 1126 | if [ $DRYRUN -le 1 ]; then |
---|
[694] | 1127 | if [ ${file_in} = histstn.nc ] ; then |
---|
| 1128 | echo "IGCM_sys_rebuild_station ${file_in} ${generic_file_name}_*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1129 | else |
---|
[778] | 1130 | echo "IGCM_sys_rebuild ${file_in} ${generic_file_name}_*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[694] | 1131 | fi |
---|
| 1132 | echo "IGCM_debug_Verif_Exit_Post" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[778] | 1133 | fi |
---|
| 1134 | # |
---|
| 1135 | # Load Patch we need to apply and apply |
---|
| 1136 | if [ $DRYRUN -le 1 ]; then |
---|
| 1137 | if [ X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) != X${NULL_STR} ]; then |
---|
| 1138 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
| 1139 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1140 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1141 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1142 | done |
---|
| 1143 | fi |
---|
| 1144 | fi |
---|
| 1145 | # |
---|
| 1146 | if [ $DRYRUN -le 1 ]; then |
---|
| 1147 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1148 | echo "IGCM_sys_PutBuffer_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1149 | else |
---|
| 1150 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1151 | fi |
---|
| 1152 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1153 | echo "IGCM_sys_Rm ${generic_file_name}_*.nc " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1154 | fi |
---|
| 1155 | SaveOnArchive=false |
---|
| 1156 | fi |
---|
| 1157 | fi |
---|
| 1158 | # |
---|
| 1159 | if [ ${SaveOnArchive} = true ] ; then |
---|
| 1160 | # |
---|
| 1161 | # Rebuild has been done online or it was not needed |
---|
| 1162 | # |
---|
| 1163 | # If we need to apply a patch we use TMP DIRECTORY before ARCHIVING if asynchronous rebuild is on |
---|
| 1164 | # |
---|
| 1165 | thereisapatch=$( eval echo \${${compname}_${flag_post}_Patches[0]} ) |
---|
| 1166 | if ( [ ! X${thereisapatch} = X${NULL_STR} ] && [ X${AsynchronousRebuild} = Xtrue ] && [ -f ${file_in} ] ) ; then |
---|
| 1167 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 1168 | IGCM_sys_Mv ${file_in} ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 1169 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=REBUILD_${PeriodDateBegin}/${file_in} > /dev/null 2>&1 |
---|
| 1170 | # |
---|
| 1171 | if [ $DRYRUN -le 1 ]; then |
---|
| 1172 | if [ ! -f ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh ] ; then |
---|
| 1173 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1174 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1175 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1176 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1177 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1178 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1179 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1180 | echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1181 | echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1182 | fi |
---|
[545] | 1183 | # |
---|
[778] | 1184 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ); do |
---|
| 1185 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1186 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1187 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1188 | done |
---|
| 1189 | # |
---|
| 1190 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1191 | echo "IGCM_sys_PutBuffer_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1192 | else |
---|
| 1193 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1194 | fi |
---|
| 1195 | echo "IGCM_debug_Verif_Exit_Post " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1196 | # |
---|
| 1197 | fi |
---|
| 1198 | else |
---|
| 1199 | # |
---|
| 1200 | # No Patch, No Asynchronous rebuild, online rebuild has been done or was not needed |
---|
| 1201 | # |
---|
| 1202 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1203 | IGCM_sys_PutBuffer_Out ${file_in} ${file_out} |
---|
| 1204 | else |
---|
| 1205 | IGCM_sys_Put_Out ${file_in} ${file_out} |
---|
| 1206 | fi |
---|
| 1207 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 1208 | if [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 1209 | for DelFile in $( ls | grep "${generic_file_name}[_0-9]*.nc" ) ; do |
---|
| 1210 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1 |
---|
| 1211 | done |
---|
| 1212 | fi |
---|
| 1213 | fi |
---|
| 1214 | fi |
---|
| 1215 | (( i=i+3 )) |
---|
[544] | 1216 | done |
---|
| 1217 | fi |
---|
[2] | 1218 | |
---|
[544] | 1219 | # Save Output Text files of models |
---|
| 1220 | #--------------------------------- |
---|
| 1221 | IGCM_debug_Print 2 "Save Output Text files for ${comp} : ${compname} component." |
---|
| 1222 | IGCM_card_DefineArrayFromOption ${card} OutputText List |
---|
| 1223 | ListTextName=${compname}_OutputText_List |
---|
[778] | 1224 | |
---|
[544] | 1225 | eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1 |
---|
| 1226 | if [ X${TextName0} != X${NULL_STR} ] ; then |
---|
| 1227 | eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1 |
---|
[2] | 1228 | |
---|
[544] | 1229 | (( i=0 )) |
---|
| 1230 | until [ $i -eq $NbFiles ]; do |
---|
[778] | 1231 | eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1 |
---|
| 1232 | eval file_out=${PREFIX}_${file_in} |
---|
[2] | 1233 | |
---|
[778] | 1234 | (( i=i+1 )) |
---|
[429] | 1235 | |
---|
[778] | 1236 | unset list_file |
---|
| 1237 | #set +A list_file -- $( ls ${file_in}* | sort 2>/dev/null ) |
---|
[544] | 1238 | # result for a a1 a10 a2 with file_in=a a a1 a2 a10 |
---|
[778] | 1239 | set +A list_file -- $( [ -f ${file_in} ] && ls ${file_in} ; for i in $(ls ${file_in}* 2>/dev/null | sed "s/${file_in}//" | sort -n) ; do ls ${file_in}$i ; done ) |
---|
| 1240 | nlist_file=${#list_file[@]} |
---|
| 1241 | if [ ${nlist_file} -gt 1 ] ; then |
---|
| 1242 | if ( ${compactoutputs} ) ; then |
---|
| 1243 | IGCM_debug_Print 2 "Parallelism of Text Output with ${nlist_file} files." |
---|
| 1244 | IGCM_debug_Print 2 "Compact files in ${file_out} : " ${list_file[*]} |
---|
| 1245 | echo ${list_file[*]} > ${file_out} |
---|
| 1246 | echo "" >> ${file_out} |
---|
[433] | 1247 | |
---|
[778] | 1248 | (( i_ = 0 )) |
---|
| 1249 | for file in ${list_file[@]} |
---|
| 1250 | do |
---|
| 1251 | echo "_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ " >> ${file_out} |
---|
| 1252 | echo "| " ${i_} " " ${file} >> ${file_out} |
---|
| 1253 | echo "- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - " >> ${file_out} |
---|
| 1254 | cat ${file} | sed "s/\(.*\)/${i_}\1/" ${file} >> ${file_out} |
---|
| 1255 | echo "" >> ${file_out} |
---|
| 1256 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
| 1257 | (( i_ = i_ + 1 )) |
---|
| 1258 | done |
---|
| 1259 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1260 | eval IGCM_sys_PutBuffer_Out ${file_out} \${R_BUF_${comp}_D}/${file_out} |
---|
| 1261 | else |
---|
| 1262 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}_D}/${file_out} |
---|
| 1263 | fi |
---|
| 1264 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_out}" > /dev/null 2>&1 |
---|
[433] | 1265 | |
---|
[778] | 1266 | if ( ${ExecutionFail} ) ; then |
---|
| 1267 | IGCM_sys_Cp ${file_out} ${SUBMIT_DIR}/Debug |
---|
| 1268 | fi |
---|
| 1269 | else |
---|
| 1270 | for file in ${list_file[@]} |
---|
| 1271 | do |
---|
| 1272 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1273 | eval IGCM_sys_PutBuffer_Out ${file} \${R_BUF_${comp}_D}/${PREFIX}_${file} |
---|
| 1274 | else |
---|
| 1275 | eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file} |
---|
| 1276 | fi |
---|
| 1277 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
[2] | 1278 | |
---|
[778] | 1279 | if ( ${ExecutionFail} ) ; then |
---|
| 1280 | IGCM_sys_Cp ${file} ${SUBMIT_DIR}/Debug/${PREFIX}_${file} |
---|
| 1281 | fi |
---|
| 1282 | done |
---|
| 1283 | fi |
---|
| 1284 | else |
---|
| 1285 | if ( [ -f ${file_in}_0000 ] || [ -f ${file_in}0 ] ) ; then |
---|
| 1286 | eval IGCM_sys_Mv ${file_in}* ${file_in} |
---|
| 1287 | fi |
---|
| 1288 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1289 | eval IGCM_sys_PutBuffer_Out ${file_in} \${R_BUF_${comp}_D}/${file_out} |
---|
| 1290 | else |
---|
| 1291 | eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${file_out} |
---|
| 1292 | fi |
---|
| 1293 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 1294 | |
---|
| 1295 | if ( ${ExecutionFail} ) ; then |
---|
| 1296 | IGCM_sys_Cp ${file_in} ${SUBMIT_DIR}/Debug/${file_out} |
---|
| 1297 | fi |
---|
| 1298 | fi |
---|
[544] | 1299 | done |
---|
| 1300 | fi |
---|
| 1301 | echo |
---|
| 1302 | done |
---|
| 1303 | IGCM_debug_PopStack "IGCM_comp_Finalize" |
---|
[2] | 1304 | } |
---|