[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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| 4 | #-Q- curie #MSUB -r TS # Nom du job |
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| 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 7 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[741] | 8 | #-Q- curie #MSUB -q xlarge |
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[704] | 9 | #-Q- curie #MSUB -Q normal |
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[837] | 10 | #-Q- curie #MSUB -A ::default_project:: |
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[681] | 11 | #-Q- curie set +x |
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[770] | 12 | #-Q- ada #!/bin/ksh |
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| 13 | #-Q- ada ####################### |
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| 14 | #-Q- ada ## ADA IDRIS ## |
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| 15 | #-Q- ada ####################### |
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| 16 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 17 | #-Q- ada # @ wall_clock_limit = 20:00:00 |
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| 18 | #-Q- ada # Nom du travail LoadLeveler |
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| 19 | #-Q- ada # @ job_name = TS |
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| 20 | #-Q- ada # Fichier de sortie standard du travail |
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| 21 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 22 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 23 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 24 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 25 | #-Q- ada # @ notification = error |
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| 26 | #-Q- ada # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 27 | #-Q- ada # @ queue |
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[172] | 28 | #-Q- sx9mercure #!/bin/ksh |
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[616] | 29 | #-Q- sx9mercure ###################### |
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| 30 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 31 | #-Q- sx9mercure ###################### |
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| 32 | #-Q- sx9mercure #PBS -N TS # Nom du job |
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| 33 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 34 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 35 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 36 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 2 heures |
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| 37 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 38 | #-Q- sx9mercure #PBS -r n |
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[222] | 39 | #-Q- titane #!/bin/ksh |
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| 40 | #-Q- titane ###################### |
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| 41 | #-Q- titane ## TITANE CEA ## |
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| 42 | #-Q- titane ###################### |
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| 43 | #-Q- titane #MSUB -r TS # Nom du job |
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[544] | 44 | #-Q- titane #MSUB -eo |
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[222] | 45 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 46 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[544] | 47 | #-Q- titane #MSUB -q mono |
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[643] | 48 | #-Q- titane #MSUB -E '-rn' |
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[287] | 49 | #-Q- lxiv8 ###################### |
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| 50 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 51 | #-Q- lxiv8 ###################### |
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| 52 | #-Q- lxiv8 #PBS -N TS |
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| 53 | #-Q- lxiv8 #PBS -m a |
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| 54 | #-Q- lxiv8 #PBS -j oe |
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| 55 | #-Q- lxiv8 #PBS -q medium |
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| 56 | #-Q- lxiv8 #PBS -o TS.$$ |
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| 57 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 58 | #-Q- default #!/bin/ksh |
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| 59 | #-Q- default ################## |
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| 60 | #-Q- default ## DEFAULT HOST ## |
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| 61 | #-Q- default ################## |
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| 62 | |
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[373] | 63 | #************************************************************** |
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| 64 | # Author: Sebastien Denvil |
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| 65 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 66 | # $Revision:: $ Revision of last commit |
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| 67 | # $Author:: $ Author of last commit |
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| 68 | # $Date:: $ Date of last commit |
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[108] | 69 | # IPSL (2006) |
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| 70 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 71 | # |
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| 72 | #************************************************************** |
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[108] | 73 | |
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| 74 | #set -eu |
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[2] | 75 | #set -vx |
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| 76 | |
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| 77 | date |
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| 78 | |
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[770] | 79 | #-Q- ada export OMP_NUM_THREADS=1 |
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[2] | 80 | |
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[712] | 81 | #D- Task type (computing or post-processing) |
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| 82 | TaskType=post-processing |
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| 83 | |
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[2] | 84 | ######################################################################## |
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| 85 | |
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| 86 | #D- Flag to determine if this job in a standalone mode |
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| 87 | #D- Default : value from AA_job if any |
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| 88 | StandAlone=${StandAlone:=true} |
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| 89 | |
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[554] | 90 | #D- Path to libIGCM |
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[206] | 91 | #D- Default : value from AA_job if any |
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[229] | 92 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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[206] | 93 | |
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| 94 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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[213] | 95 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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[209] | 96 | CompletedFlag=${CompletedFlag:=} |
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[135] | 97 | |
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[213] | 98 | #D- Flag to determine task type this script will perform. |
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| 99 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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| 100 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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[257] | 101 | TsTask=${TsTask:=2D} |
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[267] | 102 | if [ X${TsTask} = Xempty ] ; then |
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[785] | 103 | TsTask="" |
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[267] | 104 | fi |
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[213] | 105 | |
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| 106 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 107 | #D- Possible value true or false. |
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| 108 | #D- If true raw files has allready been patched by rebuild job |
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| 109 | #D- If false create_ts will patch the raw files |
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| 110 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 111 | RebuildFrequency=${RebuildFrequency:=true} |
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| 112 | |
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[2] | 113 | #D- Flag to determine job's output directory |
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| 114 | #D- Default : value from libIGCM_post.ksh if any |
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[370] | 115 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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[2] | 116 | |
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| 117 | #D- Increased verbosity (1, 2, 3) |
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| 118 | #D- Default : value from AA_job if any |
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| 119 | Verbosity=${Verbosity:=3} |
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| 120 | |
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| 121 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 122 | #D- Default : value from AA_job if any |
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| 123 | DEBUG_debug=${DEBUG_debug:=false} |
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| 124 | |
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| 125 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 126 | #D- Default : value from atmospheric driver if any |
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[254] | 127 | RESOL_ATM=ALL |
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[2] | 128 | |
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[257] | 129 | #D- Flag to determine surface resolution |
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| 130 | #D- Default : value from surface driver if any |
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| 131 | RESOL_SRF=ALL |
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| 132 | |
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| 133 | #D- Flag to determine surface resolution |
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| 134 | #D- Default : value from surface driver if any |
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| 135 | RESOL_SBG=ALL |
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| 136 | |
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[2] | 137 | #D- TEMPORARY Flag to determine ocean resolution |
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| 138 | #D- Default : value from ocean driver if any |
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| 139 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 140 | |
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| 141 | #D- TEMPORARY Flag to determine ice resolution |
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| 142 | #D- Default : value from ice driver if any |
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| 143 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 144 | |
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[178] | 145 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 146 | #D- Default : value from ice driver if any |
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| 147 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 148 | |
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[2] | 149 | ######################################################################## |
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| 150 | |
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[108] | 151 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 152 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 153 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 154 | #------- |
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| 155 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 156 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 157 | #------- |
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| 158 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 159 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 160 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[2] | 161 | |
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| 162 | ######################################################################## |
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| 163 | |
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| 164 | #set -vx |
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| 165 | |
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| 166 | # Useful cleaning function |
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| 167 | MENAGE () |
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[81] | 168 | { |
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[785] | 169 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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[2] | 170 | } |
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| 171 | |
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| 172 | ######################################################################## |
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| 173 | |
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[202] | 174 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 175 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 176 | |
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[436] | 177 | # ------------------------------------------------------------------ |
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| 178 | # Test if all was right before proceeding further |
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| 179 | # ------------------------------------------------------------------ |
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| 180 | IGCM_debug_Verif_Exit_Post |
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| 181 | |
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[2] | 182 | if [ ${StandAlone} = true ] ; then |
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[785] | 183 | CARD_DIR=${SUBMIT_DIR} |
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[2] | 184 | else |
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[785] | 185 | CARD_DIR=${RUN_DIR_PATH} |
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| 186 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 187 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 188 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 189 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[2] | 190 | fi |
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| 191 | |
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[591] | 192 | #================================== |
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[2] | 193 | # First of all |
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| 194 | # |
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[727] | 195 | # Read libIGCM compatibility version in config.card |
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| 196 | # Read UserChoices section |
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| 197 | # Read Ensemble section |
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| 198 | # Read Post section |
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| 199 | # Define all netcdf output directories |
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[591] | 200 | #================================== |
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[727] | 201 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[591] | 202 | |
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| 203 | #================================== |
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[633] | 204 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 205 | if [ X${PackDefault} = Xtrue ] ; then |
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| 206 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 207 | else |
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| 208 | config_Post_PackFrequency=NONE |
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| 209 | fi |
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[591] | 210 | |
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| 211 | #================================== |
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| 212 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
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| 213 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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| 214 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
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| 215 | fi |
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| 216 | |
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[2] | 217 | # |
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[149] | 218 | # Determine component to take care of depending on kind of task create_ts will perform |
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[2] | 219 | # |
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[392] | 220 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[2] | 221 | # |
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[149] | 222 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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| 223 | # |
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[309] | 224 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
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[301] | 225 | |
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[2] | 226 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 227 | # |
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| 228 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[149] | 229 | # |
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| 230 | # Determine Dimension of the produced time series : 2D or 3D |
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| 231 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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[785] | 232 | Dimension=2D |
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[149] | 233 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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[785] | 234 | Dimension=3D |
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[149] | 235 | else |
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[785] | 236 | Dimension="" |
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[149] | 237 | fi |
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[2] | 238 | |
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[441] | 239 | # ------------------------------------------------------------------ |
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| 240 | #D- Test if all was right before entering the loop |
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| 241 | # ------------------------------------------------------------------ |
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| 242 | IGCM_debug_Verif_Exit_Post |
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[149] | 243 | |
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[2] | 244 | ######################################################################## |
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| 245 | # |
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| 246 | # Depending on requested time series fill following variables : |
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| 247 | # |
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| 248 | # - LISTE_FILE_${comp}[*] |
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| 249 | # - LISTE_VARS_${file}[*] |
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| 250 | # - LISTE_AXIS_${file}[*] |
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| 251 | # - LISTE_PATCH_${file}[*] |
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| 252 | ######################################################################## |
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| 253 | |
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| 254 | # |
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| 255 | # For each selected component determine which files need post-processing |
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| 256 | # |
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| 257 | DoJob=false |
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| 258 | for comp in ${config_ListOfComponents[*]} ; do |
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[785] | 259 | # |
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| 260 | ActiveComp=false |
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| 261 | # |
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| 262 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 263 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 264 | # |
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| 265 | card=${CARD_DIR}/COMP/${compname}.card |
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| 266 | |
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| 267 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 268 | # |
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| 269 | ListFilesName=${compname}_OutputFiles_List |
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| 270 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 271 | # |
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| 272 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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[2] | 273 | # |
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[785] | 274 | #IGCM_debug_Print 1 "Component : ${compname}" |
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[2] | 275 | # |
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[785] | 276 | # INITIALISATION |
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[2] | 277 | # |
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[785] | 278 | typeset i |
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| 279 | if [ ${FlagToRead} ] ; then |
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| 280 | ((NbFiles=${FlagToRead})) |
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| 281 | ((i=${NbFiles})) |
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| 282 | else |
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| 283 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 284 | i=2 |
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| 285 | fi |
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[2] | 286 | # |
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[785] | 287 | until [ $i -gt $NbFiles ]; do |
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| 288 | # |
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| 289 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 290 | # |
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| 291 | if [ X${flag_post} != XNONE ] ; then |
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| 292 | # |
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| 293 | # For each comp and each file who needs post-processing |
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| 294 | # determine which variables need time series. |
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| 295 | # |
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| 296 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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| 297 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
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| 298 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
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| 299 | # |
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| 300 | # If TimeSeriesVars list is empty we skip |
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| 301 | # |
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| 302 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 303 | # |
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| 304 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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| 305 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
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| 306 | (( i=i+3 )) |
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| 307 | continue |
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| 308 | # |
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| 309 | fi |
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| 310 | # |
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| 311 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
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| 312 | # |
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| 313 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
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| 314 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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| 315 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
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| 316 | (( i=i+3 )) |
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| 317 | continue |
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| 318 | fi |
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| 319 | # |
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| 320 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
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| 321 | # |
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| 322 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
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| 323 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 324 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
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| 325 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
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| 326 | (( i=i+3 )) |
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| 327 | continue |
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| 328 | fi |
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| 329 | fi |
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| 330 | # |
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| 331 | # Now on we know we have things to do |
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| 332 | # |
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[236] | 333 | |
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[785] | 334 | # |
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| 335 | # We need coordinates axis to properly fill produced time series |
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| 336 | # |
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| 337 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
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| 338 | # |
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| 339 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
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| 340 | # |
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| 341 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
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| 342 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
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| 343 | (( i=i+3 )) |
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| 344 | continue |
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| 345 | # |
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| 346 | fi |
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| 347 | # |
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| 348 | # We need LIST of variables not allready produced (useful for standalone mode) |
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| 349 | # |
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| 350 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
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| 351 | case ${FlagDir} in |
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| 352 | *Y) TS_Dir=TS_YE ;; |
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| 353 | *M) TS_Dir=TS_MO ;; |
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| 354 | *D) TS_Dir=TS_DA ;; |
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| 355 | HF) TS_Dir=TS_HF ;; |
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| 356 | 3H) TS_Dir=TS_HF ;; |
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| 357 | INS) TS_Dir=TS_INS ;; |
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| 358 | esac |
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| 359 | # |
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| 360 | count=0 |
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| 361 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
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| 362 | # |
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| 363 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
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| 364 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
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| 365 | # |
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| 366 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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| 367 | if [ ! $? = 0 ] ; then |
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| 368 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
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| 369 | ActiveComp=true |
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| 370 | (( count = count + 1 )) |
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| 371 | fi |
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| 372 | done |
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| 373 | # |
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| 374 | if [ ${count} -gt 0 ] ; then |
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| 375 | # |
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| 376 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
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| 377 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
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| 378 | # |
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| 379 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
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| 380 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 381 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
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| 382 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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| 383 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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| 384 | if [ Xload${Patch} != X ] ; then |
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| 385 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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| 386 | eval load${Patch}=loaded |
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| 387 | fi |
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| 388 | done |
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| 389 | fi |
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| 390 | fi |
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| 391 | fi |
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| 392 | fi |
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| 393 | (( i=i+3 )) |
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| 394 | done |
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| 395 | fi |
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| 396 | # |
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| 397 | if [ ${ActiveComp} = true ] ; then |
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| 398 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
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| 399 | fi |
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[2] | 400 | done |
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| 401 | |
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| 402 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
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| 403 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
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| 404 | |
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| 405 | ######################################################################## |
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| 406 | # |
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| 407 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
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| 408 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
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| 409 | # |
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| 410 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
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| 411 | # - especially for IDRiS |
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| 412 | # - no special protection against "command too long" ! |
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| 413 | # - libIGCM_sys should handle that or modify following code part |
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| 414 | # |
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| 415 | ######################################################################## |
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| 416 | |
---|
| 417 | if [ ${StandAlone} != true ] ; then |
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[785] | 418 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
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| 419 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
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| 420 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
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[2] | 421 | |
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[785] | 422 | #if [ X${Running_Flag} = Xy ] ; then |
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| 423 | # # Time Series Job allready running |
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| 424 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
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| 425 | # exit |
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| 426 | #fi |
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| 427 | # Now run.card know we are running |
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[149] | 428 | |
---|
| 429 | |
---|
| 430 | |
---|
| 431 | |
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[785] | 432 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
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[149] | 433 | |
---|
| 434 | |
---|
| 435 | |
---|
| 436 | |
---|
| 437 | |
---|
[785] | 438 | # Get information from last execution |
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| 439 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
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| 440 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
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| 441 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
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[2] | 442 | fi |
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| 443 | |
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| 444 | # Is it the first submission or not ? |
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[149] | 445 | |
---|
| 446 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
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[785] | 447 | # First Time Series Submission |
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| 448 | FIRST_PASS=TRUE |
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| 449 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
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| 450 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
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[2] | 451 | else |
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[785] | 452 | # Last Completed Time Series |
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| 453 | FIRST_PASS=FALSE |
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| 454 | DATE_FIN_JOB_B=${CompletedFlag} |
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| 455 | date=${DateBegin}_${DATE_FIN_JOB_B} |
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| 456 | for comp in ${config_ListOfComponents[*]} ; do |
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| 457 | # |
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| 458 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
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| 459 | # |
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| 460 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
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| 461 | # |
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| 462 | #set -A liste_file |
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| 463 | unset liste_file |
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| 464 | # |
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| 465 | file_path=${R_SAVE}/${comp}/Analyse |
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| 466 | # |
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| 467 | i=0 |
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| 468 | file=${NULL_STR} |
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| 469 | # |
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| 470 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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| 471 | # |
---|
| 472 | # Determine in which output can we find file |
---|
| 473 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 474 | # |
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| 475 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
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| 476 | case ${FlagDir} in |
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| 477 | *Y) TS_Dir=TS_YE ;; |
---|
| 478 | *M) TS_Dir=TS_MO ;; |
---|
| 479 | *D) TS_Dir=TS_DA ;; |
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| 480 | HF) TS_Dir=TS_HF ;; |
---|
| 481 | 3H) TS_Dir=TS_HF ;; |
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| 482 | INS) TS_Dir=TS_INS ;; |
---|
| 483 | esac |
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| 484 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
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[2] | 485 | # |
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[785] | 486 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
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| 487 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
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| 488 | # |
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| 489 | done |
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[2] | 490 | done |
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[785] | 491 | if [ X${file} != X${NULL_STR} ] ; then |
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| 492 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
| 493 | # Even if some files are missing we tried to continue |
---|
| 494 | # Either ListVar in compname.card are asked but not present in original history file |
---|
| 495 | # Either a previous TS task failed |
---|
| 496 | ExitFlag=false |
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| 497 | IGCM_debug_Verif_Exit_Post |
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| 498 | fi |
---|
| 499 | done |
---|
| 500 | # |
---|
| 501 | LEVEL=0 |
---|
| 502 | # |
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[2] | 503 | fi |
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| 504 | |
---|
| 505 | ######################################################################## |
---|
| 506 | # |
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| 507 | # DEFINE LOOP PARAMETERS |
---|
| 508 | # |
---|
| 509 | ######################################################################## |
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| 510 | |
---|
| 511 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 512 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 513 | |
---|
| 514 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 515 | |
---|
| 516 | if [ ${DoJob} = true ] ; then |
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[785] | 517 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 518 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
| 519 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
---|
| 520 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 521 | done |
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[2] | 522 | else |
---|
[785] | 523 | NBRE_FILE_TOT=0 |
---|
[2] | 524 | fi |
---|
| 525 | |
---|
| 526 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
[785] | 527 | NBRE_TOUR=1 |
---|
[2] | 528 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
[785] | 529 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
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[2] | 530 | else |
---|
[785] | 531 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
[2] | 532 | fi |
---|
| 533 | |
---|
| 534 | CURRENT_LOOP=1 |
---|
| 535 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
| 536 | # WE HAVE 3 LEVELS |
---|
| 537 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 538 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 539 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 540 | |
---|
| 541 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 542 | |
---|
[785] | 543 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 544 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 545 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
[2] | 546 | |
---|
[785] | 547 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 548 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 549 | else |
---|
| 550 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 551 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 552 | fi |
---|
[2] | 553 | |
---|
[785] | 554 | DATE_FIN=${PeriodDateEnd} |
---|
| 555 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
[2] | 556 | |
---|
[785] | 557 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 558 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
[2] | 559 | |
---|
[785] | 560 | LEVEL=1 |
---|
| 561 | DEPOT="TRUE" |
---|
| 562 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 563 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 564 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 565 | |
---|
[785] | 566 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
| 567 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 568 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 569 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 570 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
[2] | 571 | else |
---|
[785] | 572 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 573 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 574 | fi |
---|
[2] | 575 | |
---|
[785] | 576 | (( TotLength = 0 )) |
---|
| 577 | COMPTEUR=1 |
---|
| 578 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 579 | |
---|
[785] | 580 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 581 | # |
---|
| 582 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 583 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 584 | (( TotLength = TotLength + Length )) |
---|
| 585 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 586 | # |
---|
| 587 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 588 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
[2] | 589 | |
---|
[785] | 590 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 591 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 592 | DEPOT="FALSE" |
---|
| 593 | LEVEL=2 |
---|
| 594 | else |
---|
| 595 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 596 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
| 597 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 598 | |
---|
[785] | 599 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 600 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 601 | DATE_FIN=${PeriodDateEnd} |
---|
| 602 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
[2] | 603 | |
---|
[785] | 604 | LEVEL=3 |
---|
| 605 | DEPOT="TRUE" |
---|
| 606 | FLAG_B="TRUE" |
---|
| 607 | fi |
---|
[2] | 608 | |
---|
[785] | 609 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 610 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 611 | # |
---|
| 612 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 613 | # |
---|
| 614 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 615 | # |
---|
| 616 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 617 | # |
---|
| 618 | i=0 |
---|
| 619 | # |
---|
| 620 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 621 | # |
---|
| 622 | # Determine in which output we can find file |
---|
| 623 | # IE : Output/MO or Output/DA or ... |
---|
| 624 | # |
---|
| 625 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 626 | case ${FlagDir} in |
---|
| 627 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 628 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
| 629 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 630 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 631 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 632 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 633 | *) IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
| 634 | IGCM_sys_Exit "Job create_ts" ;; |
---|
| 635 | esac |
---|
[2] | 636 | |
---|
[785] | 637 | # Initialize array |
---|
| 638 | #set -A liste_file |
---|
| 639 | #set -A liste_file_tmp |
---|
| 640 | unset liste_file |
---|
| 641 | unset liste_file_tmp |
---|
| 642 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
[2] | 643 | |
---|
[785] | 644 | COMPTEUR=1 |
---|
[817] | 645 | MissingFile=FALSE |
---|
[785] | 646 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 647 | |
---|
[785] | 648 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 649 | # |
---|
| 650 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
---|
| 651 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
[2] | 652 | |
---|
[785] | 653 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 654 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
[2] | 655 | |
---|
[785] | 656 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 657 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
[817] | 658 | |
---|
| 659 | IGCM_sys_TestFileArchive ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 660 | if [ $? = 0 ] ; then |
---|
| 661 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 662 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 663 | else |
---|
| 664 | IGCM_debug_Print 1 "WARNING ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc dont exist" |
---|
| 665 | MissingFile=TRUE |
---|
| 666 | fi |
---|
[785] | 667 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 668 | # |
---|
| 669 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
[817] | 670 | |
---|
| 671 | # We skip this file type if one of them is missing. |
---|
| 672 | if [ "${MissingFile}" = "TRUE" ] ; then |
---|
| 673 | IGCM_debug_Print 1 "WARNING We skip ${file} type processing" |
---|
| 674 | continue |
---|
| 675 | fi |
---|
| 676 | |
---|
[785] | 677 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
[2] | 678 | |
---|
[785] | 679 | # Get selected files |
---|
| 680 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
| 681 | IGCM_debug_Verif_Exit_Post |
---|
[2] | 682 | |
---|
[785] | 683 | # Apply IGCM_Patch if needed |
---|
| 684 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
| 685 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 686 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
| 687 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 688 | IGCM_${Patch} ${file_t} |
---|
| 689 | IGCM_debug_Verif_Exit_Post |
---|
| 690 | done |
---|
| 691 | done |
---|
| 692 | fi |
---|
| 693 | fi |
---|
[2] | 694 | |
---|
[785] | 695 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 696 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
| 697 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
---|
| 698 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 699 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 700 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
[514] | 701 | |
---|
[785] | 702 | liste_coord=" " |
---|
| 703 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 704 | liste_coord=${liste_coord}${axis}"," |
---|
| 705 | done |
---|
[287] | 706 | |
---|
[785] | 707 | # Time axis must be the last dimension |
---|
| 708 | time_axis=${axis} |
---|
[388] | 709 | |
---|
[785] | 710 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 711 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 712 | # |
---|
| 713 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 714 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 715 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 716 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 717 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
---|
| 718 | # |
---|
| 719 | IGCM_sys_Rm ${file1} |
---|
| 720 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
---|
| 721 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 722 | # "${file1} = file_before ? |
---|
| 723 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 724 | fi |
---|
| 725 | |
---|
| 726 | ExitFlag=false |
---|
| 727 | else |
---|
| 728 | # OR NOT |
---|
| 729 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 730 | fi |
---|
| 731 | |
---|
| 732 | # |
---|
| 733 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
| 734 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 735 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 736 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
| 737 | # |
---|
| 738 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 739 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
| 740 | if [ ! "X${file1}" = "X" ] ; then |
---|
| 741 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 742 | fi |
---|
| 743 | # |
---|
| 744 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
---|
| 745 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
| 746 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
| 747 | # |
---|
| 748 | # Compute yearly average considering calendar |
---|
| 749 | # and set date of the mid year to 01/07 at 00:00 |
---|
| 750 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE} |
---|
| 751 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
---|
| 752 | # Needed because cdo applies calculs on all variables |
---|
| 753 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
---|
| 754 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
---|
| 755 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc 2>/dev/null |
---|
| 756 | if [ $? -eq 0 ] ; then |
---|
| 757 | # Now append all ancillary variables if previous cdo operator ok |
---|
| 758 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
---|
| 759 | fi |
---|
| 760 | |
---|
| 761 | # Put global history attribut |
---|
| 762 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
---|
| 763 | # |
---|
| 764 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
---|
| 765 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
---|
| 766 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
---|
| 767 | fi |
---|
| 768 | # |
---|
| 769 | IGCM_sys_Rm ${file_out} |
---|
| 770 | ExitFlag=false |
---|
| 771 | # |
---|
| 772 | fi |
---|
| 773 | # |
---|
| 774 | done # for var in ${liste_var} ; do |
---|
| 775 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
| 776 | done # for file in ${liste_file_brut} do |
---|
| 777 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
| 778 | # GO AHEAD IN DEEPEST LOOP |
---|
| 779 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
[2] | 780 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
| 781 | # FINISH |
---|
| 782 | |
---|
| 783 | # DODS copy |
---|
| 784 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 785 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
| 786 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 787 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
| 788 | done |
---|
[2] | 789 | done |
---|
| 790 | |
---|
| 791 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
[213] | 792 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
[2] | 793 | |
---|
[213] | 794 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
[2] | 795 | export listVarEnv |
---|
| 796 | |
---|
| 797 | #D- |
---|
| 798 | # -------------------------------------------------------------------- |
---|
| 799 | #D- Test if all was right |
---|
| 800 | # -------------------------------------------------------------------- |
---|
| 801 | IGCM_debug_Verif_Exit_Post |
---|
| 802 | # -------------------------------------------------------------------- |
---|
| 803 | #D- Submit MONITORING |
---|
| 804 | # -------------------------------------------------------------------- |
---|
[414] | 805 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
[785] | 806 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
| 807 | IGCM_sys_QsubPost monitoring |
---|
[387] | 808 | fi |
---|
[2] | 809 | |
---|
| 810 | #D- |
---|
| 811 | # -------------------------------------------------------------------- |
---|
| 812 | #D- Update the run.card |
---|
| 813 | # -------------------------------------------------------------------- |
---|
| 814 | if [ ${StandAlone} != true ] ; then |
---|
[785] | 815 | # Put in run.card end period of time series |
---|
| 816 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
| 817 | # We have finish the job ! |
---|
| 818 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
[2] | 819 | fi |
---|
[203] | 820 | |
---|
[590] | 821 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 822 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 823 | |
---|
[2] | 824 | date |
---|