[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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| 4 | #-Q- curie #MSUB -r TS # Nom du job |
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| 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 7 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[741] | 8 | #-Q- curie #MSUB -q xlarge |
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[704] | 9 | #-Q- curie #MSUB -Q normal |
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[681] | 10 | #-Q- curie set +x |
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[770] | 11 | #-Q- ada #!/bin/ksh |
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| 12 | #-Q- ada ####################### |
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| 13 | #-Q- ada ## ADA IDRIS ## |
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| 14 | #-Q- ada ####################### |
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| 15 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 16 | #-Q- ada # @ wall_clock_limit = 20:00:00 |
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| 17 | #-Q- ada # Nom du travail LoadLeveler |
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| 18 | #-Q- ada # @ job_name = TS |
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| 19 | #-Q- ada # Fichier de sortie standard du travail |
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| 20 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 21 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 22 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 23 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 24 | #-Q- ada # @ notification = error |
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| 25 | #-Q- ada # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 26 | #-Q- ada # @ queue |
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[172] | 27 | #-Q- sx9mercure #!/bin/ksh |
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[616] | 28 | #-Q- sx9mercure ###################### |
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| 29 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 30 | #-Q- sx9mercure ###################### |
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| 31 | #-Q- sx9mercure #PBS -N TS # Nom du job |
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| 32 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 33 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 34 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 35 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 2 heures |
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| 36 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 37 | #-Q- sx9mercure #PBS -r n |
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[222] | 38 | #-Q- titane #!/bin/ksh |
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| 39 | #-Q- titane ###################### |
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| 40 | #-Q- titane ## TITANE CEA ## |
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| 41 | #-Q- titane ###################### |
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| 42 | #-Q- titane #MSUB -r TS # Nom du job |
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[544] | 43 | #-Q- titane #MSUB -eo |
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[222] | 44 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 45 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[544] | 46 | #-Q- titane #MSUB -q mono |
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[643] | 47 | #-Q- titane #MSUB -E '-rn' |
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[287] | 48 | #-Q- lxiv8 ###################### |
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| 49 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 50 | #-Q- lxiv8 ###################### |
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| 51 | #-Q- lxiv8 #PBS -N TS |
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| 52 | #-Q- lxiv8 #PBS -m a |
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| 53 | #-Q- lxiv8 #PBS -j oe |
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| 54 | #-Q- lxiv8 #PBS -q medium |
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| 55 | #-Q- lxiv8 #PBS -o TS.$$ |
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| 56 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 57 | #-Q- default #!/bin/ksh |
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| 58 | #-Q- default ################## |
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| 59 | #-Q- default ## DEFAULT HOST ## |
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| 60 | #-Q- default ################## |
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| 61 | |
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[373] | 62 | #************************************************************** |
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| 63 | # Author: Sebastien Denvil |
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| 64 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 65 | # $Revision:: $ Revision of last commit |
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| 66 | # $Author:: $ Author of last commit |
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| 67 | # $Date:: $ Date of last commit |
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[108] | 68 | # IPSL (2006) |
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| 69 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 70 | # |
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| 71 | #************************************************************** |
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[108] | 72 | |
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| 73 | #set -eu |
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[2] | 74 | #set -vx |
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| 75 | |
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| 76 | date |
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| 77 | |
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[770] | 78 | #-Q- ada export OMP_NUM_THREADS=1 |
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[2] | 79 | |
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[712] | 80 | #D- Task type (computing or post-processing) |
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| 81 | TaskType=post-processing |
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| 82 | |
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[2] | 83 | ######################################################################## |
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| 84 | |
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| 85 | #D- Flag to determine if this job in a standalone mode |
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| 86 | #D- Default : value from AA_job if any |
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| 87 | StandAlone=${StandAlone:=true} |
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| 88 | |
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[554] | 89 | #D- Path to libIGCM |
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[206] | 90 | #D- Default : value from AA_job if any |
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[229] | 91 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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[206] | 92 | |
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| 93 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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[213] | 94 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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[209] | 95 | CompletedFlag=${CompletedFlag:=} |
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[135] | 96 | |
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[213] | 97 | #D- Flag to determine task type this script will perform. |
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| 98 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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| 99 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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[257] | 100 | TsTask=${TsTask:=2D} |
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[267] | 101 | if [ X${TsTask} = Xempty ] ; then |
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[785] | 102 | TsTask="" |
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[267] | 103 | fi |
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[213] | 104 | |
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| 105 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 106 | #D- Possible value true or false. |
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| 107 | #D- If true raw files has allready been patched by rebuild job |
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| 108 | #D- If false create_ts will patch the raw files |
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| 109 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 110 | RebuildFrequency=${RebuildFrequency:=true} |
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| 111 | |
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[2] | 112 | #D- Flag to determine job's output directory |
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| 113 | #D- Default : value from libIGCM_post.ksh if any |
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[370] | 114 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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[2] | 115 | |
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| 116 | #D- Increased verbosity (1, 2, 3) |
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| 117 | #D- Default : value from AA_job if any |
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| 118 | Verbosity=${Verbosity:=3} |
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| 119 | |
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| 120 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 121 | #D- Default : value from AA_job if any |
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| 122 | DEBUG_debug=${DEBUG_debug:=false} |
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| 123 | |
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| 124 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 125 | #D- Default : value from atmospheric driver if any |
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[254] | 126 | RESOL_ATM=ALL |
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[2] | 127 | |
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[257] | 128 | #D- Flag to determine surface resolution |
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| 129 | #D- Default : value from surface driver if any |
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| 130 | RESOL_SRF=ALL |
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| 131 | |
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| 132 | #D- Flag to determine surface resolution |
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| 133 | #D- Default : value from surface driver if any |
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| 134 | RESOL_SBG=ALL |
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| 135 | |
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[2] | 136 | #D- TEMPORARY Flag to determine ocean resolution |
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| 137 | #D- Default : value from ocean driver if any |
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| 138 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 139 | |
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| 140 | #D- TEMPORARY Flag to determine ice resolution |
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| 141 | #D- Default : value from ice driver if any |
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| 142 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 143 | |
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[178] | 144 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 145 | #D- Default : value from ice driver if any |
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| 146 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 147 | |
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[2] | 148 | ######################################################################## |
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| 149 | |
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[108] | 150 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 151 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 152 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 153 | #------- |
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| 154 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 155 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 156 | #------- |
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| 157 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 158 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 159 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[2] | 160 | |
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| 161 | ######################################################################## |
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| 162 | |
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| 163 | #set -vx |
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| 164 | |
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| 165 | # Useful cleaning function |
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| 166 | MENAGE () |
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[81] | 167 | { |
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[785] | 168 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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[2] | 169 | } |
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| 170 | |
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| 171 | ######################################################################## |
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| 172 | |
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[202] | 173 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 174 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 175 | |
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[436] | 176 | # ------------------------------------------------------------------ |
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| 177 | # Test if all was right before proceeding further |
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| 178 | # ------------------------------------------------------------------ |
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| 179 | IGCM_debug_Verif_Exit_Post |
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| 180 | |
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[2] | 181 | if [ ${StandAlone} = true ] ; then |
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[785] | 182 | CARD_DIR=${SUBMIT_DIR} |
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[2] | 183 | else |
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[785] | 184 | CARD_DIR=${RUN_DIR_PATH} |
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| 185 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 186 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 187 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 188 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[2] | 189 | fi |
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| 190 | |
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[591] | 191 | #================================== |
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[2] | 192 | # First of all |
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| 193 | # |
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[727] | 194 | # Read libIGCM compatibility version in config.card |
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| 195 | # Read UserChoices section |
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| 196 | # Read Ensemble section |
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| 197 | # Read Post section |
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| 198 | # Define all netcdf output directories |
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[591] | 199 | #================================== |
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[727] | 200 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[591] | 201 | |
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| 202 | #================================== |
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[633] | 203 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 204 | if [ X${PackDefault} = Xtrue ] ; then |
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| 205 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 206 | else |
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| 207 | config_Post_PackFrequency=NONE |
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| 208 | fi |
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[591] | 209 | |
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| 210 | #================================== |
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| 211 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
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| 212 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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| 213 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
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| 214 | fi |
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| 215 | |
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[2] | 216 | # |
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[149] | 217 | # Determine component to take care of depending on kind of task create_ts will perform |
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[2] | 218 | # |
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[392] | 219 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[2] | 220 | # |
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[149] | 221 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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| 222 | # |
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[309] | 223 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
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[301] | 224 | |
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[2] | 225 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 226 | # |
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| 227 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[149] | 228 | # |
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| 229 | # Determine Dimension of the produced time series : 2D or 3D |
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| 230 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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[785] | 231 | Dimension=2D |
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[149] | 232 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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[785] | 233 | Dimension=3D |
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[149] | 234 | else |
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[785] | 235 | Dimension="" |
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[149] | 236 | fi |
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[2] | 237 | |
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[441] | 238 | # ------------------------------------------------------------------ |
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| 239 | #D- Test if all was right before entering the loop |
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| 240 | # ------------------------------------------------------------------ |
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| 241 | IGCM_debug_Verif_Exit_Post |
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[149] | 242 | |
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[2] | 243 | ######################################################################## |
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| 244 | # |
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| 245 | # Depending on requested time series fill following variables : |
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| 246 | # |
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| 247 | # - LISTE_FILE_${comp}[*] |
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| 248 | # - LISTE_VARS_${file}[*] |
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| 249 | # - LISTE_AXIS_${file}[*] |
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| 250 | # - LISTE_PATCH_${file}[*] |
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| 251 | ######################################################################## |
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| 252 | |
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| 253 | # |
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| 254 | # For each selected component determine which files need post-processing |
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| 255 | # |
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| 256 | DoJob=false |
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| 257 | for comp in ${config_ListOfComponents[*]} ; do |
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[785] | 258 | # |
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| 259 | ActiveComp=false |
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| 260 | # |
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| 261 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 262 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 263 | # |
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| 264 | card=${CARD_DIR}/COMP/${compname}.card |
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| 265 | |
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| 266 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 267 | # |
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| 268 | ListFilesName=${compname}_OutputFiles_List |
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| 269 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 270 | # |
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| 271 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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[2] | 272 | # |
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[785] | 273 | #IGCM_debug_Print 1 "Component : ${compname}" |
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[2] | 274 | # |
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[785] | 275 | # INITIALISATION |
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[2] | 276 | # |
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[785] | 277 | typeset i |
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| 278 | if [ ${FlagToRead} ] ; then |
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| 279 | ((NbFiles=${FlagToRead})) |
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| 280 | ((i=${NbFiles})) |
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| 281 | else |
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| 282 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 283 | i=2 |
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| 284 | fi |
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[2] | 285 | # |
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[785] | 286 | until [ $i -gt $NbFiles ]; do |
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| 287 | # |
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| 288 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 289 | # |
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| 290 | if [ X${flag_post} != XNONE ] ; then |
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| 291 | # |
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| 292 | # For each comp and each file who needs post-processing |
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| 293 | # determine which variables need time series. |
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| 294 | # |
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| 295 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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| 296 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
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| 297 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
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| 298 | # |
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| 299 | # If TimeSeriesVars list is empty we skip |
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| 300 | # |
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| 301 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 302 | # |
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| 303 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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| 304 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
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| 305 | (( i=i+3 )) |
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| 306 | continue |
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| 307 | # |
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| 308 | fi |
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| 309 | # |
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| 310 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
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| 311 | # |
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| 312 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
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| 313 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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| 314 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
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| 315 | (( i=i+3 )) |
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| 316 | continue |
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| 317 | fi |
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| 318 | # |
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| 319 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
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| 320 | # |
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| 321 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
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| 322 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 323 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
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| 324 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
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| 325 | (( i=i+3 )) |
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| 326 | continue |
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| 327 | fi |
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| 328 | fi |
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| 329 | # |
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| 330 | # Now on we know we have things to do |
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| 331 | # |
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[236] | 332 | |
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[785] | 333 | # |
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| 334 | # We need coordinates axis to properly fill produced time series |
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| 335 | # |
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| 336 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
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| 337 | # |
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| 338 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
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| 339 | # |
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| 340 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
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| 341 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
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| 342 | (( i=i+3 )) |
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| 343 | continue |
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| 344 | # |
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| 345 | fi |
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| 346 | # |
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| 347 | # We need LIST of variables not allready produced (useful for standalone mode) |
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| 348 | # |
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| 349 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
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| 350 | case ${FlagDir} in |
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| 351 | *Y) TS_Dir=TS_YE ;; |
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| 352 | *M) TS_Dir=TS_MO ;; |
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| 353 | *D) TS_Dir=TS_DA ;; |
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| 354 | HF) TS_Dir=TS_HF ;; |
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| 355 | 3H) TS_Dir=TS_HF ;; |
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| 356 | INS) TS_Dir=TS_INS ;; |
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| 357 | esac |
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| 358 | # |
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| 359 | count=0 |
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| 360 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
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| 361 | # |
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| 362 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
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| 363 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
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| 364 | # |
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| 365 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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| 366 | if [ ! $? = 0 ] ; then |
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| 367 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
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| 368 | ActiveComp=true |
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| 369 | (( count = count + 1 )) |
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| 370 | fi |
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| 371 | done |
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| 372 | # |
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| 373 | if [ ${count} -gt 0 ] ; then |
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| 374 | # |
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| 375 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
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| 376 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
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| 377 | # |
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| 378 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
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| 379 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 380 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
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| 381 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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| 382 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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| 383 | if [ Xload${Patch} != X ] ; then |
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| 384 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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| 385 | eval load${Patch}=loaded |
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| 386 | fi |
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| 387 | done |
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| 388 | fi |
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| 389 | fi |
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| 390 | fi |
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| 391 | fi |
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| 392 | (( i=i+3 )) |
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| 393 | done |
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| 394 | fi |
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| 395 | # |
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| 396 | if [ ${ActiveComp} = true ] ; then |
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| 397 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
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| 398 | fi |
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[2] | 399 | done |
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| 400 | |
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| 401 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
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| 402 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
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| 403 | |
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| 404 | ######################################################################## |
---|
| 405 | # |
---|
| 406 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
| 407 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
| 408 | # |
---|
| 409 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
| 410 | # - especially for IDRiS |
---|
| 411 | # - no special protection against "command too long" ! |
---|
| 412 | # - libIGCM_sys should handle that or modify following code part |
---|
| 413 | # |
---|
| 414 | ######################################################################## |
---|
| 415 | |
---|
| 416 | if [ ${StandAlone} != true ] ; then |
---|
[785] | 417 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
| 418 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
| 419 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
[2] | 420 | |
---|
[785] | 421 | #if [ X${Running_Flag} = Xy ] ; then |
---|
| 422 | # # Time Series Job allready running |
---|
| 423 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
| 424 | # exit |
---|
| 425 | #fi |
---|
| 426 | # Now run.card know we are running |
---|
[149] | 427 | |
---|
| 428 | |
---|
| 429 | |
---|
| 430 | |
---|
[785] | 431 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
[149] | 432 | |
---|
| 433 | |
---|
| 434 | |
---|
| 435 | |
---|
| 436 | |
---|
[785] | 437 | # Get information from last execution |
---|
| 438 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
| 439 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
| 440 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
[2] | 441 | fi |
---|
| 442 | |
---|
| 443 | # Is it the first submission or not ? |
---|
[149] | 444 | |
---|
| 445 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
[785] | 446 | # First Time Series Submission |
---|
| 447 | FIRST_PASS=TRUE |
---|
| 448 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
---|
| 449 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
[2] | 450 | else |
---|
[785] | 451 | # Last Completed Time Series |
---|
| 452 | FIRST_PASS=FALSE |
---|
| 453 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
| 454 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
| 455 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 456 | # |
---|
| 457 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 458 | # |
---|
| 459 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 460 | # |
---|
| 461 | #set -A liste_file |
---|
| 462 | unset liste_file |
---|
| 463 | # |
---|
| 464 | file_path=${R_SAVE}/${comp}/Analyse |
---|
| 465 | # |
---|
| 466 | i=0 |
---|
| 467 | file=${NULL_STR} |
---|
| 468 | # |
---|
| 469 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 470 | # |
---|
| 471 | # Determine in which output can we find file |
---|
| 472 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 473 | # |
---|
| 474 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 475 | case ${FlagDir} in |
---|
| 476 | *Y) TS_Dir=TS_YE ;; |
---|
| 477 | *M) TS_Dir=TS_MO ;; |
---|
| 478 | *D) TS_Dir=TS_DA ;; |
---|
| 479 | HF) TS_Dir=TS_HF ;; |
---|
| 480 | 3H) TS_Dir=TS_HF ;; |
---|
| 481 | INS) TS_Dir=TS_INS ;; |
---|
| 482 | esac |
---|
| 483 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
[2] | 484 | # |
---|
[785] | 485 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 486 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 487 | # |
---|
| 488 | done |
---|
[2] | 489 | done |
---|
[785] | 490 | if [ X${file} != X${NULL_STR} ] ; then |
---|
| 491 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
| 492 | # Even if some files are missing we tried to continue |
---|
| 493 | # Either ListVar in compname.card are asked but not present in original history file |
---|
| 494 | # Either a previous TS task failed |
---|
| 495 | ExitFlag=false |
---|
| 496 | IGCM_debug_Verif_Exit_Post |
---|
| 497 | fi |
---|
| 498 | done |
---|
| 499 | # |
---|
| 500 | LEVEL=0 |
---|
| 501 | # |
---|
[2] | 502 | fi |
---|
| 503 | |
---|
| 504 | ######################################################################## |
---|
| 505 | # |
---|
| 506 | # DEFINE LOOP PARAMETERS |
---|
| 507 | # |
---|
| 508 | ######################################################################## |
---|
| 509 | |
---|
| 510 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 511 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 512 | |
---|
| 513 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 514 | |
---|
| 515 | if [ ${DoJob} = true ] ; then |
---|
[785] | 516 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 517 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
| 518 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
---|
| 519 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 520 | done |
---|
[2] | 521 | else |
---|
[785] | 522 | NBRE_FILE_TOT=0 |
---|
[2] | 523 | fi |
---|
| 524 | |
---|
| 525 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
[785] | 526 | NBRE_TOUR=1 |
---|
[2] | 527 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
[785] | 528 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
[2] | 529 | else |
---|
[785] | 530 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
[2] | 531 | fi |
---|
| 532 | |
---|
| 533 | CURRENT_LOOP=1 |
---|
| 534 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
| 535 | # WE HAVE 3 LEVELS |
---|
| 536 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 537 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 538 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 539 | |
---|
| 540 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 541 | |
---|
[785] | 542 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 543 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 544 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
[2] | 545 | |
---|
[785] | 546 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 547 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 548 | else |
---|
| 549 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 550 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 551 | fi |
---|
[2] | 552 | |
---|
[785] | 553 | DATE_FIN=${PeriodDateEnd} |
---|
| 554 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
[2] | 555 | |
---|
[785] | 556 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 557 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
[2] | 558 | |
---|
[785] | 559 | LEVEL=1 |
---|
| 560 | DEPOT="TRUE" |
---|
| 561 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 562 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 563 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 564 | |
---|
[785] | 565 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
| 566 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 567 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 568 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 569 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
[2] | 570 | else |
---|
[785] | 571 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 572 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 573 | fi |
---|
[2] | 574 | |
---|
[785] | 575 | (( TotLength = 0 )) |
---|
| 576 | COMPTEUR=1 |
---|
| 577 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 578 | |
---|
[785] | 579 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 580 | # |
---|
| 581 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 582 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 583 | (( TotLength = TotLength + Length )) |
---|
| 584 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 585 | # |
---|
| 586 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 587 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
[2] | 588 | |
---|
[785] | 589 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 590 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 591 | DEPOT="FALSE" |
---|
| 592 | LEVEL=2 |
---|
| 593 | else |
---|
| 594 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 595 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
| 596 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 597 | |
---|
[785] | 598 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 599 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 600 | DATE_FIN=${PeriodDateEnd} |
---|
| 601 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
[2] | 602 | |
---|
[785] | 603 | LEVEL=3 |
---|
| 604 | DEPOT="TRUE" |
---|
| 605 | FLAG_B="TRUE" |
---|
| 606 | fi |
---|
[2] | 607 | |
---|
[785] | 608 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 609 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 610 | # |
---|
| 611 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 612 | # |
---|
| 613 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 614 | # |
---|
| 615 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 616 | # |
---|
| 617 | i=0 |
---|
| 618 | # |
---|
| 619 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 620 | # |
---|
| 621 | # Determine in which output we can find file |
---|
| 622 | # IE : Output/MO or Output/DA or ... |
---|
| 623 | # |
---|
| 624 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 625 | case ${FlagDir} in |
---|
| 626 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 627 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
| 628 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 629 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 630 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 631 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 632 | *) IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
| 633 | IGCM_sys_Exit "Job create_ts" ;; |
---|
| 634 | esac |
---|
[2] | 635 | |
---|
[785] | 636 | # Initialize array |
---|
| 637 | #set -A liste_file |
---|
| 638 | #set -A liste_file_tmp |
---|
| 639 | unset liste_file |
---|
| 640 | unset liste_file_tmp |
---|
| 641 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
[2] | 642 | |
---|
[785] | 643 | COMPTEUR=1 |
---|
[817] | 644 | MissingFile=FALSE |
---|
[785] | 645 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 646 | |
---|
[785] | 647 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 648 | # |
---|
| 649 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
---|
| 650 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
[2] | 651 | |
---|
[785] | 652 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 653 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
[2] | 654 | |
---|
[785] | 655 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 656 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
[817] | 657 | |
---|
| 658 | IGCM_sys_TestFileArchive ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 659 | if [ $? = 0 ] ; then |
---|
| 660 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 661 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 662 | else |
---|
| 663 | IGCM_debug_Print 1 "WARNING ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc dont exist" |
---|
| 664 | MissingFile=TRUE |
---|
| 665 | fi |
---|
[785] | 666 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 667 | # |
---|
| 668 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
[817] | 669 | |
---|
| 670 | # We skip this file type if one of them is missing. |
---|
| 671 | if [ "${MissingFile}" = "TRUE" ] ; then |
---|
| 672 | IGCM_debug_Print 1 "WARNING We skip ${file} type processing" |
---|
| 673 | continue |
---|
| 674 | fi |
---|
| 675 | |
---|
[785] | 676 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
[2] | 677 | |
---|
[785] | 678 | # Get selected files |
---|
| 679 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
| 680 | IGCM_debug_Verif_Exit_Post |
---|
[2] | 681 | |
---|
[785] | 682 | # Apply IGCM_Patch if needed |
---|
| 683 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
| 684 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 685 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
| 686 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 687 | IGCM_${Patch} ${file_t} |
---|
| 688 | IGCM_debug_Verif_Exit_Post |
---|
| 689 | done |
---|
| 690 | done |
---|
| 691 | fi |
---|
| 692 | fi |
---|
[2] | 693 | |
---|
[785] | 694 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 695 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
| 696 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
---|
| 697 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 698 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 699 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
[514] | 700 | |
---|
[785] | 701 | liste_coord=" " |
---|
| 702 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 703 | liste_coord=${liste_coord}${axis}"," |
---|
| 704 | done |
---|
[287] | 705 | |
---|
[785] | 706 | # Time axis must be the last dimension |
---|
| 707 | time_axis=${axis} |
---|
[388] | 708 | |
---|
[785] | 709 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 710 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 711 | # |
---|
| 712 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 713 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 714 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 715 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 716 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
---|
| 717 | # |
---|
| 718 | IGCM_sys_Rm ${file1} |
---|
| 719 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
---|
| 720 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 721 | # "${file1} = file_before ? |
---|
| 722 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 723 | fi |
---|
| 724 | |
---|
| 725 | ExitFlag=false |
---|
| 726 | else |
---|
| 727 | # OR NOT |
---|
| 728 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 729 | fi |
---|
| 730 | |
---|
| 731 | # |
---|
| 732 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
| 733 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 734 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 735 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
| 736 | # |
---|
| 737 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 738 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
| 739 | if [ ! "X${file1}" = "X" ] ; then |
---|
| 740 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 741 | fi |
---|
| 742 | # |
---|
| 743 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
---|
| 744 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
| 745 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
| 746 | # |
---|
| 747 | # Compute yearly average considering calendar |
---|
| 748 | # and set date of the mid year to 01/07 at 00:00 |
---|
| 749 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE} |
---|
| 750 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
---|
| 751 | # Needed because cdo applies calculs on all variables |
---|
| 752 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
---|
| 753 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
---|
| 754 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc 2>/dev/null |
---|
| 755 | if [ $? -eq 0 ] ; then |
---|
| 756 | # Now append all ancillary variables if previous cdo operator ok |
---|
| 757 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
---|
| 758 | fi |
---|
| 759 | |
---|
| 760 | # Put global history attribut |
---|
| 761 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
---|
| 762 | # |
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| 763 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
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| 764 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
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| 765 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
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| 766 | fi |
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| 767 | # |
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| 768 | IGCM_sys_Rm ${file_out} |
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| 769 | ExitFlag=false |
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| 770 | # |
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| 771 | fi |
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| 772 | # |
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| 773 | done # for var in ${liste_var} ; do |
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| 774 | IGCM_sys_Rm ${liste_file_tmp[*]} |
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| 775 | done # for file in ${liste_file_brut} do |
---|
| 776 | done # for comp in ${config_ListOfComponents[*]} ; do |
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| 777 | # GO AHEAD IN DEEPEST LOOP |
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| 778 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
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[2] | 779 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
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| 780 | # FINISH |
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| 781 | |
---|
| 782 | # DODS copy |
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| 783 | for comp in ${config_ListOfComponents[*]} ; do |
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[785] | 784 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
| 785 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
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| 786 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
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| 787 | done |
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[2] | 788 | done |
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| 789 | |
---|
| 790 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
[213] | 791 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
[2] | 792 | |
---|
[213] | 793 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
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[2] | 794 | export listVarEnv |
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| 795 | |
---|
| 796 | #D- |
---|
| 797 | # -------------------------------------------------------------------- |
---|
| 798 | #D- Test if all was right |
---|
| 799 | # -------------------------------------------------------------------- |
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| 800 | IGCM_debug_Verif_Exit_Post |
---|
| 801 | # -------------------------------------------------------------------- |
---|
| 802 | #D- Submit MONITORING |
---|
| 803 | # -------------------------------------------------------------------- |
---|
[414] | 804 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
[785] | 805 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
| 806 | IGCM_sys_QsubPost monitoring |
---|
[387] | 807 | fi |
---|
[2] | 808 | |
---|
| 809 | #D- |
---|
| 810 | # -------------------------------------------------------------------- |
---|
| 811 | #D- Update the run.card |
---|
| 812 | # -------------------------------------------------------------------- |
---|
| 813 | if [ ${StandAlone} != true ] ; then |
---|
[785] | 814 | # Put in run.card end period of time series |
---|
| 815 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
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| 816 | # We have finish the job ! |
---|
| 817 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
[2] | 818 | fi |
---|
[203] | 819 | |
---|
[590] | 820 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 821 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 822 | |
---|
[2] | 823 | date |
---|