1 | #-Q- cesium #!/bin/ksh |
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2 | #-Q- cesium ###################### |
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3 | #-Q- cesium ## CESIUM CEA ## |
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4 | #-Q- cesium ###################### |
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5 | #-Q- cesium #MSUB -r MULTISE # Nom du job |
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6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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9 | #-Q- cesium #MSUB -E "-j o" |
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10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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11 | #-Q- platine #!/usr/bin/ksh |
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12 | #-Q- platine ################### |
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13 | #-Q- platine ## PLATINE CEA ## |
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14 | #-Q- platine ################### |
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15 | #-Q- platine #BSUB -J MULTISE # Nom du job |
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16 | #-Q- platine #BSUB -N # message a la fin du job |
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17 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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18 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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19 | #-Q- platine #BSUB -q post # Passage en queue post |
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20 | #-Q- platine #BSUB -L /bin/ksh |
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21 | #-Q- sx8brodie #!/bin/ksh |
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22 | #-Q- sx8brodie ####################### |
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23 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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24 | #-Q- sx8brodie ####################### |
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25 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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26 | #-Q- sx8brodie # @ wall_clock_limit = 1:00:00 |
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27 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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28 | #-Q- sx8brodie # @ job_name = MULTISE |
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29 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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30 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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31 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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32 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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33 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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34 | #-Q- sx8brodie # @ notification = error |
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35 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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36 | #-Q- sx8brodie # @ queue |
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37 | #-Q- aix6 #!/bin/ksh |
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38 | #-Q- aix6 ####################### |
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39 | #-Q- aix6 ## VARGAS IDRIS ## |
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40 | #-Q- aix6 ####################### |
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41 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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42 | #-Q- aix6 # @ wall_clock_limit = 1:00:00 |
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43 | #-Q- aix6 # Nom du travail LoadLeveler |
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44 | #-Q- aix6 # @ job_name = MULTISE |
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45 | #-Q- aix6 # Fichier de sortie standard du travail |
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46 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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47 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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48 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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49 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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50 | #-Q- aix6 # @ notification = error |
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51 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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52 | #-Q- aix6 # @ queue |
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53 | #-Q- ulam #!/bin/ksh |
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54 | #-Q- ulam ####################### |
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55 | #-Q- ulam ## ULAM IDRIS ## |
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56 | #-Q- ulam ####################### |
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57 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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58 | #-Q- ulam # @ wall_clock_limit = 1:00:00 |
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59 | #-Q- ulam # Nom du travail LoadLeveler |
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60 | #-Q- ulam # @ job_name = MULTISE |
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61 | #-Q- ulam # Fichier de sortie standard du travail |
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62 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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63 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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64 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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65 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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66 | #-Q- ulam # @ notification = error |
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67 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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68 | #-Q- ulam # @ queue |
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69 | #-Q- sx8mercure #!/bin/ksh |
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70 | #-Q- sx8mercure ###################### |
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71 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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72 | #-Q- sx8mercure ###################### |
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73 | #-Q- sx8mercure #PBS -N MULTISE # Nom du job |
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74 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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75 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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76 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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77 | #-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 1 heures |
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78 | #-Q- sx8mercure #PBS -q scalaire |
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79 | #-Q- sx9mercure #!/bin/ksh |
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80 | #-Q- sx9mercure ######################### |
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81 | #-Q- sx9mercure ## CESIUM FOR SX9 CEA ## |
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82 | #-Q- sx9mercure ######################### |
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83 | #-Q- sx9mercure #MSUB -r MULTISE # Nom du job |
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84 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
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85 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
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86 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
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87 | #-Q- sx9mercure #MSUB -E "-j o" |
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88 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
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89 | #-Q- titane #!/bin/ksh |
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90 | #-Q- titane ###################### |
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91 | #-Q- titane ## TITANE CEA ## |
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92 | #-Q- titane ###################### |
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93 | #-Q- titane #MSUB -r MULTISE # Nom du job |
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94 | #-Q- titane #MSUB -N 1 # Reservation du noeud |
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95 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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96 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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97 | #-Q- titane #MSUB -E "-j o" |
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98 | #-Q- titane #MSUB -E "-S /bin/ksh" |
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99 | #-Q- titane ##MSUB -e nco.out # Sortie standard |
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100 | #-Q- titane ##MSUB -o nco.out # Sortie standard |
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101 | #-Q- lxiv8 ###################### |
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102 | #-Q- lxiv8 ## OBELIX LSCE ## |
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103 | #-Q- lxiv8 ###################### |
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104 | #-Q- lxiv8 #PBS -N MULTISE |
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105 | #-Q- lxiv8 #PBS -m a |
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106 | #-Q- lxiv8 #PBS -j oe |
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107 | #-Q- lxiv8 #PBS -q medium |
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108 | #-Q- lxiv8 #PBS -o SE.$$ |
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109 | #-Q- lxiv8 #PBS -S /bin/ksh |
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110 | #-Q- default #!/bin/ksh |
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111 | #-Q- default ################## |
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112 | #-Q- default ## DEFAULT HOST ## |
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113 | #-Q- default ################## |
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114 | |
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115 | #************************************************************** |
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116 | # Author: Marie-Alice Foujols |
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117 | # Contact: Marie-Alice.Foujols__at__ipsl.jussieu.fr |
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118 | # $Revision:: $ Revision of last commit |
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119 | # $Author:: $ Author of last commit |
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120 | # $Date:: $ Date of last commit |
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121 | # IPSL (2006) |
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122 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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123 | # |
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124 | #************************************************************** |
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125 | |
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126 | #set -eu |
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127 | #set -vx |
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128 | |
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129 | date |
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130 | |
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131 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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132 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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133 | #-Q- ulam export OMP_NUM_THREADS=1 |
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134 | |
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135 | ######################################################################## |
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136 | |
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137 | #D- Flag to determine if this job in a standalone mode |
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138 | #D- Default : value from AA_job if any |
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139 | StandAlone=${StandAlone:=true} |
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140 | |
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141 | #D- Low level debug : to bypass lib test checks and stack construction |
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142 | #D- Default : value from AA_job if any |
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143 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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144 | # WARNING for StandAlone used : To run this script on some machine, |
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145 | # you must check MirrorlibIGCM variable in sys library. |
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146 | # If this variable is true, you must use libIGCM_POST path instead |
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147 | # of your running libIGCM directory. |
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148 | |
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149 | #D- Flag to determine atlas job's output directory |
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150 | #D- Default : value from libIGCM_post.ksh if any |
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151 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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152 | |
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153 | #D- Increased verbosity (1, 2, 3) |
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154 | #D- Default : value from AA_job if any |
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155 | Verbosity=${Verbosity:=3} |
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156 | |
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157 | #D- Low level debug : to bypass lib test checks and stack construction |
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158 | #D- Default : value from AA_job if any |
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159 | DEBUG_debug=${DEBUG_debug:=false} |
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160 | |
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161 | #D- TEMPORARY Flag to determine atmospheric resolution |
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162 | #D- Default : value from atmospheric driver if any |
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163 | RESOL_ATM=${RESOL_ATM:=ALL} |
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164 | |
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165 | #D- Flag to determine surface resolution |
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166 | #D- Default : value from surface driver if any |
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167 | RESOL_SRF=ALL |
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168 | |
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169 | #D- Flag to determine surface resolution |
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170 | #D- Default : value from surface driver if any |
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171 | RESOL_SBG=ALL |
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172 | |
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173 | #D- TEMPORARY Flag to determine ocean resolution |
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174 | #D- Default : value from ocean driver if any |
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175 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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176 | |
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177 | #D- TEMPORARY Flag to determine ice resolution |
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178 | #D- Default : value from ice driver if any |
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179 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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180 | |
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181 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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182 | #D- Default : value from ice driver if any |
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183 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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184 | |
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185 | ######################################################################## |
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186 | |
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187 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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188 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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189 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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190 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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191 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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192 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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193 | #------- |
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194 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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195 | |
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196 | ######################################################################## |
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197 | |
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198 | #set -vx |
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199 | |
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200 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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201 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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202 | |
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203 | # ------------------------------------------------------------------ |
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204 | # Test if all was right before proceeding further |
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205 | # ------------------------------------------------------------------ |
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206 | IGCM_debug_Verif_Exit_Post |
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207 | |
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208 | if [ ${StandAlone} = true ] ; then |
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209 | CARD_DIR=${SUBMIT_DIR} |
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210 | else |
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211 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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212 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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213 | fi |
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214 | |
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215 | # |
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216 | # First of all |
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217 | # |
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218 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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219 | typeset option |
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220 | for option in ${config_UserChoices[*]} ; do |
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221 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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222 | done |
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223 | # |
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224 | echo |
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225 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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226 | #IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName |
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227 | #IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName |
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228 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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229 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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230 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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231 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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232 | echo |
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233 | |
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234 | #================================== |
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235 | #R_SAVE : Job output directory |
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236 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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237 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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238 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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239 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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240 | else |
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241 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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242 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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243 | fi |
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244 | # |
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245 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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246 | |
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247 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Post |
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248 | |
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249 | # |
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250 | # If option MultiSeasonalFrequency is not found (optionnal) put MultiSeasonalFrequency=50Y |
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251 | # |
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252 | FoundMultiSeasonal=false |
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253 | for option in ${config_Post[*]} ; do |
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254 | if [ ${option} = MultiSeasonalFrequency ] ; then |
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255 | FoundMultiSeasonal=true |
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256 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post MultiSeasonalFrequency |
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257 | fi |
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258 | done |
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259 | if [ ! X${FoundMultiSeasonal} = Xtrue ] ; then |
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260 | config_Post_MultiSeasonalFrequency=50Y |
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261 | fi |
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262 | # |
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263 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
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264 | # |
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265 | # Determine period for seasonnal average. Default : value from AA_job if any |
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266 | # |
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267 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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268 | # |
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269 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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270 | # |
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271 | IGCM_debug_Print 1 "DefineVariableFromOption : Post " |
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272 | IGCM_debug_PrintVariables 3 config_Post_SeasonalFrequency |
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273 | IGCM_debug_PrintVariables 3 config_Post_MultiSeasonalFrequency |
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274 | echo |
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275 | |
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276 | # |
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277 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
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278 | # |
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279 | multifreq=$( echo ${config_Post_MultiSeasonalFrequency} | sed -e "s/[yY]//" ) |
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280 | # |
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281 | DIR_OUT=SE_${multifreq}Y |
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282 | # |
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283 | an_multi_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
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284 | an_multi_deb=$( IGCM_date_YearDigit $(( an_multi_fin - multifreq + 1 )) ) |
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285 | an_multi_fin=$( IGCM_date_YearDigit ${an_multi_fin} ) |
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286 | # |
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287 | # For each component selected determine which files need post-processing |
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288 | # |
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289 | for comp in ${config_ListOfComponents[*]} ; do |
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290 | # |
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291 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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292 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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293 | # |
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294 | card=${CARD_DIR}/COMP/${compname}.card |
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295 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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296 | # |
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297 | ListFilesName=${compname}_OutputFiles_List |
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298 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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299 | # |
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300 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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301 | # |
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302 | # INITIALISATION |
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303 | # |
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304 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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305 | typeset i=2 |
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306 | # |
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307 | until [ $i -gt $NbFiles ]; do |
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308 | # |
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309 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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310 | # |
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311 | if [ X${flag_post} != XNONE ] ; then |
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312 | # |
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313 | # Check if seasonal is required for this file |
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314 | # |
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315 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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316 | # |
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317 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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318 | # |
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319 | # variable option allready typeset above |
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320 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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321 | if [ ${option} = Seasonal ] ; then |
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322 | FoundSeasonal=true |
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323 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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324 | fi |
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325 | done |
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326 | # |
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327 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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328 | eval ${compname}_${flag_post}_Seasonal=ON |
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329 | fi |
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330 | # |
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331 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
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332 | (( i=i+3 )) |
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333 | continue |
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334 | fi |
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335 | # |
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336 | # CREATE LIST |
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337 | # |
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338 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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339 | # |
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340 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
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341 | # |
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342 | MULTI_DIRECTORY=${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
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343 | # |
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344 | TestedFile=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${FILE}.nc |
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345 | # |
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346 | IGCM_sys_TestFileArchive ${MULTI_DIRECTORY}/${TestedFile} |
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347 | if [ ! $? = 0 ] ; then |
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348 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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349 | fi |
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350 | fi |
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351 | (( i=i+3 )) |
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352 | done # until [ $i -eq $NbFiles ] |
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353 | fi |
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354 | done # for comp |
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355 | |
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356 | for comp in ${config_ListOfComponents[*]} ; do |
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357 | # |
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358 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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359 | # |
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360 | i=0 |
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361 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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362 | # |
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363 | RESULT_MULTI_SE=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${file}.nc |
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364 | # Do not redo an existing SE |
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365 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
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366 | if [ $? = 0 ] ; then |
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367 | continue |
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368 | fi |
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369 | # |
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370 | eval file_path=\${R_OUT_${comp}}/Analyse/SE/ |
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371 | # |
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372 | (( an = an_multi_deb )) |
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373 | # Initialize array |
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374 | #set -A liste_file_se |
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375 | #set -A liste_file_se_tmp |
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376 | unset liste_file_se |
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377 | unset liste_file_se_tmp |
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378 | while [ ${an} -le ${an_multi_fin} ] ; do |
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379 | # |
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380 | an_deb=$(printf "%04i\n" ${an} ) |
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381 | # |
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382 | (( an_fin = an_deb + freq - 1 )) |
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383 | date=${an_deb}_${an_fin} |
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384 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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385 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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386 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_SE_${date}_${file}.nc |
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387 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_SE_${date}_${file}.nc |
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388 | (( an = an + freq )) |
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389 | done |
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390 | # |
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391 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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392 | IGCM_debug_Verif_Exit_Post |
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393 | # Search of common list of variables to be treated |
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394 | nbfile=0 |
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395 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
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396 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
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397 | (( nbfile = nbfile + 1 )) |
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398 | done |
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399 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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400 | IGCM_sys_Rm tmpfile_ncra |
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401 | |
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402 | # detect time counter : time or time_counter ie unlimited variable |
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403 | var_unlim=$(ncdump -h ${liste_file_se_tmp[1]}|grep UNLIMITED| cut -d ' ' -f 1) |
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404 | |
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405 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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406 | # |
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407 | (( nb = ${mois} - 1 )) |
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408 | # |
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409 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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410 | IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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411 | done |
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412 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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413 | # |
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414 | |
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415 | # Search of common list of variables to be treated |
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416 | nbfile=0 |
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417 | for file_common_var in ${OUT_SE[*]} ; do |
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418 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncrcat |
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419 | (( nbfile = nbfile + 1 )) |
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420 | done |
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421 | list_var_final_ncrcat=`cat tmpfile_ncrcat | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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422 | IGCM_sys_Rm tmpfile_ncrcat |
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423 | |
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424 | IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_MULTI_SE} |
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425 | # |
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426 | IGCM_sys_Rm ${OUT_SE[*]} |
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427 | |
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428 | # Put correct climatological axis following calendar |
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429 | case ${config_UserChoices_CalendarType} in |
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430 | 360d|360_day) |
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431 | # 360 days |
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432 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15, 45, 75, 105, 135, 165, 195, 225, 255, 285, 315, 345.} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 30, 30, 60, 60, 90, 90, 120, 120, 150, 150, 180, 180, 210, 210, 240, 240, 270, 270, 300, 300, 330, 330, 360.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"360_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
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433 | ;; |
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434 | noleap|365_day) |
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435 | # 365 days |
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436 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45, 74.5, 105, 135.5, 166, 196.5, 227.5, 258, 288.5, 319, 349.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59, 59, 90, 90, 120, 120, 151, 151, 181, 181, 212, 212, 243, 243, 273, 273, 304, 304, 334, 334, 365.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"365_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
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437 | ;; |
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438 | all_leap|366_day) |
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439 | # 366 days |
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440 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.5, 75.5, 106, 136.5, 167, 197.5, 228.5, 259, 289.5, 320, 350.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 60, 60, 91, 91, 121, 121, 152, 152, 182, 182, 213, 213, 244, 244, 274, 274, 305, 305, 335, 335, 366.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"366_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
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441 | ;; |
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442 | leap|gregorian|standard) |
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443 | # 365.2425 days |
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444 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.12125, 74.7425, 105.2425, 135.7425, 166.2425, 196.7425, 227.7425, 258.2425, 288.7425, 319.2425, 349.7425} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59.2425, 59.2425, 90.2425, 90.2425, 120.2425, 120.2425, 151.2425, 151.2425, 181.2425, 181.2425, 212.2425, 212.2425, 243.2425, 243.2425, 273.2425, 273.2425, 304.2425, 304.2425, 334.2425, 334.2425, 365.2425} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"gregorian\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
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445 | ;; |
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446 | esac |
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447 | eval IGCM_sys_ncap2 -Oh -s $ncap2cmd ${RESULT_MULTI_SE} tmp.nc |
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448 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
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449 | IGCM_sys_Mv tmp.nc ${RESULT_MULTI_SE} |
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450 | # |
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451 | eval IGCM_sys_Put_Out ${RESULT_MULTI_SE} \${R_OUT_${comp}}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
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452 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
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453 | # |
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454 | done |
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455 | done |
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456 | |
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457 | # DODS copy |
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458 | for comp in ${config_ListOfComponents[*]} ; do |
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459 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
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460 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${DIR_OUT} |
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461 | done |
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462 | |
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463 | YEARS=${an_multi_deb}_${an_multi_fin} |
---|
464 | |
---|
465 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
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466 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
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467 | export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; export DIR_OUT |
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468 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS,DIR_OUT" |
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469 | export listVarEnv; |
---|
470 | |
---|
471 | #D- |
---|
472 | # -------------------------------------------------------------------- |
---|
473 | #D- Test if all was right before ATLAS |
---|
474 | # -------------------------------------------------------------------- |
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475 | IGCM_debug_Verif_Exit_Post |
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476 | |
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477 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
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478 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
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479 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
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480 | # |
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481 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
482 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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483 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
484 | IGCM_sys_QsubPost atlas_LMDZ ; |
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485 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
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486 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
487 | Script_Post_Output=additionnal.${PeriodDateEnd} ; |
---|
488 | IGCM_sys_QsubPost additionnal ; |
---|
489 | # |
---|
490 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] || \ |
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491 | [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || \ |
---|
492 | [ ${config_UserChoices_TagName} = "IPSLCM5B" ] || \ |
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493 | [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] ; then |
---|
494 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
495 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
496 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
497 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
498 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
499 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
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500 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
501 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
502 | # |
---|
503 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
---|
504 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
---|
505 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
---|
506 | # |
---|
507 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
508 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
509 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
510 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
511 | # |
---|
512 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
---|
513 | # |
---|
514 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
---|
515 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
516 | # |
---|
517 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
---|
518 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
---|
519 | # |
---|
520 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
521 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
522 | # |
---|
523 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || |
---|
524 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] ; then |
---|
525 | # |
---|
526 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
527 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
528 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ; then |
---|
529 | # |
---|
530 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
531 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
532 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
533 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
534 | elif [ ${config_UserChoices_TagName} = "ORCA2_OFF_PISCES" ] ; then |
---|
535 | # |
---|
536 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
537 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
538 | # |
---|
539 | fi |
---|
540 | |
---|
541 | # Clean RUN_DIR_PATH (necessary for cesium) |
---|
542 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|