Ignore:
Timestamp:
06/03/24 15:18:06 (5 weeks ago)
Author:
jgipsl
Message:

Update all experiments using ORCHIDEE_4 according to settings choosen in offline mode by ORCHIDEE project groupe.

  • All experiements follow the set up accoring to the TRENDY protocol: changes in nitrogen input files and vegetation file
  • update parameter files for ORCHIDEE_4 according to changes in offline setup
  • added new experiments for ORCHIDEE_4 LMDZOR/clim_pdControl.orch4 and IPSLCM-reg/piControl_TEST.orch4
Location:
CONFIG/UNIFORM/v7/IPSLCM7/EXPERIMENTS/LMDZOR/clim_pdControl.orch4
Files:
1 deleted
3 edited
2 copied

Legend:

Unmodified
Added
Removed
  • CONFIG/UNIFORM/v7/IPSLCM7/EXPERIMENTS/LMDZOR/clim_pdControl.orch4/COMP/orchidee.card

    r6822 r6870  
    33 
    44[UserChoices] 
     5# Select the PFT and age class set-up. NOTE: the number of PFTs should match the  
     6# number in the land cover and maps. The number of age classes does not affect the 
     7# maps that can be used. 
     8DefSuffix = 15pft.1ac 
     9 
    510# VEGET_UPDATE_at_start=y : orchidee.driver will set VEGET_UPDATE=1Y at the first cumul period when starting a new simulation.  
    611#                           After the first period, VEGET_UPDATE will be set according to the choice done below.   
     
    1419# ROUTING=standard   => in orchidee.def RIVER_ROUTING=y and ROUTING_METHOD=standard 
    1520# ROUTING=simple     => in orchidee.def RIVER_ROUTING=y and ROUTING_METHOD=simple 
     21# ROUTING=native     => in orchidee.def RIVER_ROUTING=y and ROUTING_METHOD=native (note: routing_simple.nc is used also for this case) 
    1622# ROUTING=off        => in orchidee.def RIVER_ROUTING=n  
    17 ROUTING=standard 
     23ROUTING=simple 
    1824 
    1925# Specify output level for output files 
     
    2228# output_level_filename=12    : highest level which will output all variables 
    2329# output_level_filename=NONE  : deactivate the file 
    24 output_level_sechiba_history = 11 
     30output_level_sechiba_history = 2 
    2531output_level_sechiba_out_2 = NONE 
    26 output_level_sechiba_history_4dim = 11 
     32output_level_sechiba_history_4dim = NONE 
    2733 
    2834# Specify output frequency for each file [1y, 1mo, 1d, 10800s, 1ts] 
    2935# Settings using WriteFrequency in config.card is not longer used 
    3036output_freq_sechiba_history = 1mo 
    31 output_freq_sechiba_out_2 = 10800s 
     37output_freq_sechiba_out_2 = 1d 
    3238output_freq_sechiba_history_4dim = 1mo 
    3339 
    34  
    3540[InitialStateFiles] 
    36 List=   (${R_IN}/SRF/SOIL/soils_param_zobler_coord.nc, soils_param.nc), \ 
    37         (${R_IN}/SRF/SOIL/soils_param_zobler_coord.nc, soilcolor.nc), \ 
    38         (${R_IN}/SRF/reftemp.nc, . ), \ 
    39         (${R_IN}/SRF/ROUTING/routing.nc, . ), \ 
    40         (${R_IN}/SRF/albedo/alb_bg_modisopt_2D_ESA_v2.nc, alb_bg.nc ), \ 
    41         (${R_IN}/SRF/cartepente2d_15min.nc, .) 
     41List=       (${R_IN}/SRF/SOIL/soil_bulk_and_ph.nc, .), \ 
     42            (${R_IN}/SRF/SOIL/soils_param_usda_with_clay_oxisol_coord.nc, soils_param.nc), \ 
     43            (${R_IN}/SRF/SOIL/soils_param_zobler_coord.nc, soilcolor.nc), \ 
     44            (${R_IN}/SRF/cartepente2d_15min4.nc, cartepente2d_15min.nc), \ 
     45            (${R_IN}/SRF/reftemp4.nc, reftemp.nc), \ 
     46            (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2023.1/PFTmap_2000.nc, PFTmap.nc) 
    4247 
    4348[BoundaryFiles] 
    44 List= () 
    45 ListNonDel= (${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v1/PFTmap_2000.nc, PFTmap.nc),\ 
    46             (${R_IN}/SRF/WOODHARVEST/LUH2v2/historical/woodharvest_2000.nc,           woodharvest.nc),\ 
     49List=   () 
     50ListNonDel= (${R_IN}/SRF/ROUTING/routing_simple.nc, .) 
    4751 
    4852[SmoothFiles] 
     
    5054 
    5155[ParametersFiles] 
    52 List=   (${SUBMIT_DIR}/PARAM/ORCHIDEE/orchidee.def_v22, orchidee.def)   ,\ 
    53         (${MODIPSL}/modeles/ORCHIDEE_2_2/src_xml/file_def_orchidee.xml, .)  ,\ 
    54         (${MODIPSL}/modeles/ORCHIDEE_2_2/src_xml/context_input_orchidee.xml, .) ,\ 
    55         (${MODIPSL}/modeles/ORCHIDEE_2_2/src_xml/context_orchidee.xml, .)   ,\ 
    56         (${MODIPSL}/modeles/ORCHIDEE_2_2/src_xml/field_def_orchidee.xml, .) 
     56List=   (${SUBMIT_DIR}/PARAM/ORCHIDEE/orchidee.def_v4, orchidee.def)   ,\ 
     57        (${SUBMIT_DIR}/PARAM/ORCHIDEE/orchidee_pft.def_${DefSuffix}_v4, orchidee_pft.def) ,\ 
     58        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/file_def_orchidee.xml, .)  ,\ 
     59        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_input_orchidee.xml, .) ,\ 
     60        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_orchidee.xml, .)   ,\ 
     61        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/context_routing_orchidee.xml, .)   ,\ 
     62        (${MODIPSL}/modeles/ORCHIDEE_4/src_xml/field_def_orchidee.xml, .) 
    5763 
    5864[RestartFiles] 
    59 List=   (sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc) 
     65List=   (sechiba_rest_out.nc, sechiba_rest.nc, sechiba_rest_in.nc) ,\ 
     66        (routing_restart.nc, routing_restart.nc, routing_start.nc) 
    6067 
    6168[OutputText] 
    62 List=   (out_orchidee*, orchidee.def, used_orchidee.def, iodef.xml, context_orchidee.xml, context_input_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc) 
     69List=   (out_orchidee*, orchidee.def, orchidee_pft.def, used_orchidee.def, used_orchidee_pft.def, iodef.xml, context_orchidee.xml, context_input_orchidee.xml, context_routing_orchidee.xml, field_def_orchidee.xml, file_def_orchidee.xml, river_desc.nc) 
    6370 
    6471[OutputFiles] 
    65 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
    66         (sechiba_history_4dim.nc,${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history_4dim.nc, NONE), \ 
    67         (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE), \ 
     72List=   (sechiba_history.nc,      ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \ 
     73        (sechiba_history_4dim.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history_4dim.nc, NONE), \ 
     74        (sechiba_out_2.nc,        ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE), \ 
    6875        (ORCHIDEE_interp_diag.nc, ${R_OUT_SRF_O_D}/${PREFIX}_ORCHIDEE_interp_diag.nc, NONE), \ 
    69         (forcing_by_ORCHIDEE.nc, ${R_OUT_SRF_O_H}/${PREFIX}_forcing_by_ORCHIDEE.nc, NONE) 
     76        (forcing_by_ORCHIDEE.nc,  ${R_OUT_SRF_O_H}/${PREFIX}_forcing_by_ORCHIDEE.nc, NONE), \ 
     77        (diag_routing.nc,         ${R_OUT_SRF_O_D}/${PREFIX}_1D_sechiba_routing.nc, NONE),\ 
     78        (diag_routing_r.nc,       ${R_OUT_SRF_O_D}/${PREFIX}_1D_sechiba_routing_r.nc, NONE) 
    7079 
    7180 
     
    7382Patches = () 
    7483GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds) 
    75 TimeSeriesVars2D = (nobiofrac, alb_nir, alb_vis, evap, fluxlat, fluxsens, netrad, qair, rain, runoff, snow, snownobio, snowf, frac_snow, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac, TWBR, riverflow, coastalflow, DelSoilMoist_daily, DelIntercept_daily, DelSWE_daily, delstock_routing_daily, snowmelt, LAImean, transpir, evapnu) 
     84TimeSeriesVars2D = (nobiofrac, alb_nir, alb_vis, evap, fluxlat, fluxsens, rain, runoff, snow, snownobio, snowf, frac_snow, subli, tair, temp_sol, drainage, mrsos, mrso, TWBR, riverflow, coastalflow, DelSoilMoist_daily, DelIntercept_daily, DelSWE_daily, delstock_routing_daily, LAImean, transpir, evapnu, lwdown, swdown, gppCrop, rhCrop) 
    7685ChunckJob2D = NONE 
    77 TimeSeriesVars3D = (lai, maxvegetfrac, vegetfrac, ptn, nee) 
     86TimeSeriesVars3D = (lai, maxvegetfrac, vegetfrac, nee, gpp, growth_resp, hetero_resp, humrel, inter, maint_resp, npp, precisol) 
    7887ChunckJob3D = NONE 
    7988Seasonal = ON 
     
    8291Patches = () 
    8392GatherWithInternal = (lon, lat, time_counter, Areas, Contfrac, time_centered, time_centered_bounds) 
    84 TimeSeriesVars2D = (mrsos, mrro) 
    85 ChunckJob2D = 50Y 
    86 TimeSeriesVars3D = (ptn) 
    87 ChunckJob3D = 10Y 
     93TimeSeriesVars2D = () 
     94ChunckJob2D = NONE 
     95TimeSeriesVars3D = (snowdz, snowtemp, snowrho) 
     96ChunckJob3D = NONE 
    8897Seasonal = OFF 
    8998 
  • CONFIG/UNIFORM/v7/IPSLCM7/EXPERIMENTS/LMDZOR/clim_pdControl.orch4/COMP/stomate.card

    r5878 r6870  
    33 
    44[UserChoices] 
     5# NINPUT_UPDATE=1Y: change in nitrogen input maps every year.  
     6# Nitrogen input maps should be set in BoundaryFiles/List for 1Y or in InitialStateFile for 0Y. 
     7NINPUT_UPDATE=0Y 
     8 
     9# STOMATE_IMPOSE_CN: impose nitrogen 
     10# If STOMATE_IMPOSE_CN=y the file leaf_cn.nc must be available except if STOMATE_READ_CN=n 
     11# If STOMATE_IMPOSE_CN=n the other N-input files are needed, see commented files below 
     12STOMATE_IMPOSE_CN=n 
    513 
    614# Specify output level for output files 
    715# Only the files stomate_history.nc and stomate_ipcc_history.nc can be set here. 
    816# output_level_filname=0     : lowest level writing only variables needed for the monitoring 
    9 # output_level_filname=10    : highest level which will output all variables 
     17# output_level_filname=1     : highest level which will output all variables 
    1018# output_level_filname=NONE  : deactivate the file 
    11 output_level_stomate_history = 10 
    12 output_level_stomate_ipcc_history = 1 
     19output_level_stomate_history = 0  
     20output_level_stomate_ipcc_history = 0 
    1321 
    1422# Specify output frequency for each file [1y, 1mo, 1d] 
     
    1725output_freq_stomate_ipcc_history = 1mo 
    1826 
    19  
    2027[InitialStateFiles] 
    21 List=   () 
     28List=   (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_crop_nh4_2000.nc, Nfert_ammo_cropland.nc) ,\ 
     29        (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_crop_no3_2000.nc, Nfert_nitr_cropland.nc) ,\ 
     30        (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_pas_nh4_2000.nc,  Nfert_ammo_pasture.nc) ,\ 
     31        (${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP2/synthetic/historical/nfer_pas_no3_2000.nc,  Nfert_nitr_pasture.nc) ,\ 
     32        (${R_IN}/SRF/NITROGEN/N_DEPOSITION/CMIP6.2/historical/nhx__2000.nc, Nammonium.nc), \ 
     33        (${R_IN}/SRF/NITROGEN/N_DEPOSITION/CMIP6.2/historical/noy__2000.nc, Nnitrate.nc), \ 
     34        (${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc, bnf.nc) 
    2235 
    2336[BoundaryFiles] 
    24 List=   () 
     37List= () 
    2538ListNonDel= () 
    2639 
     
    3952[OutputFiles] 
    4053List=   (stomate_history.nc,      ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc,      Post_1M_stomate_history),    \ 
    41         (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history) 
     54        (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history), \ 
     55        (stomate_history_4dim.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history_4dim.nc, NONE), \ 
     56        (stomate_fixed_dia.nc, ${R_OUT_SBG_O_Y}/${PREFIX}_1Y_stomate_fixed_dia.nc, NONE) 
    4257 
    43 [Post_1M_stomate_history] 
    44 Patches = () 
    45 GatherWithInternal = (lon, lat, Areas, CONTFRAC, time_counter, time_centered, time_centered_bounds) 
    46 TimeSeriesVars2D = (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE) 
     58[Post_1Y_stomate_history] 
     59Patches= () 
     60GatherWithInternal= (lon, lat, time_counter, Areas, CONTFRAC) 
     61TimeSeriesVars2D= (T2M_MONTH,RESOLUTION_X,RESOLUTION_Y,FLUX_PROD_S_LCC_c,FLUX_PROD_M_LCC_c,FLUX_PROD_L_LCC_c,FLUX_PROD_S_HARVEST_c,FLUX_PROD_M_HARVEST_c,FLUX_PROD_L_HARVEST_c) 
    4762ChunckJob2D = NONE 
    48 TimeSeriesVars3D = (LAI,VEGET_COV_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,CO2_FIRE,TOTAL_TURN,WOOD_HARVEST_PFT) 
     63TimeSeriesVars3D= (LAI_MEAN,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,TOTAL_M_n,TOTAL_M_c,TOTAL_BM_LITTER_c,TOTAL_BM_LITTER_n,ADAPTATION,REGENERATION,SOIL_ACTIVE_c,SOIL_ACTIVE_n,SOIL_SLOW_c,SOIL_SLOW_n,SOIL_PASSIVE_c,SOIL_PASSIVE_n,SOIL_SURF_c,SOIL_SURF_n,LITTER_STR_AB_c,LITTER_STR_AB_n,LITTER_STR_BE_c,LITTER_STR_BE_n,LITTER_MET_AB_c,LITTER_MET_AB_n,LITTER_MET_BE_c,LITTER_MET_BE_n,LITTER_WOD_AB_c,LITTER_WOD_AB_n,LITTER_WOD_BE_c,LITTER_WOD_BE_n,TOTAL_TURN_c,TOTAL_TURN_n,LEAF_M_n,LEAF_M_c,N_UPTAKE_NO3,N_UPTAKE_NH4,NH3_EMISSION,N2_EMISSION,N2O_EMISSION,NOX_EMISSION,NBP_pool_c,NBP_flux_c,MBC_NBP1_c,MBC_NBP1_n,MBC_NBP2_c,MBC_NBP2_n) 
    4964ChunckJob3D = NONE 
    50 Seasonal = ON 
     65Seasonal=ON 
    5166 
    52 [Post_1M_stomate_ipcc_history] 
    53 Patches = () 
    54 GatherWithInternal = (lon, lat, Areas, CONTFRAC, time_counter, time_centered, time_centered_bounds) 
    55 TimeSeriesVars2D = (cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep, fWoodharvest) 
     67[Post_1Y_stomate_ipcc_history] 
     68Patches= () 
     69GatherWithInternal= (lon, lat, time_counter, Areas, CONTFRAC) 
     70TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, cMassVariation, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp_c, nbp_n, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep_c, nep_n, fWoodharvest) 
    5671ChunckJob2D = NONE 
    57 TimeSeriesVars3D = () 
     72TimeSeriesVars3D=() 
    5873ChunckJob3D = NONE 
    59 Seasonal = ON 
     74Seasonal=ON 
     75 
  • CONFIG/UNIFORM/v7/IPSLCM7/EXPERIMENTS/LMDZOR/clim_pdControl.orch4/config.card

    r6719 r6870  
    1515TagName=LMDZOR 
    1616#D- Choice of experiment in EXPERIEMENTS directory 
    17 ExpType=LMDZOR/clim_pdControl 
     17ExpType=LMDZOR/clim_pdControl.orch4 
    1818#============================ 
    1919#-- leap, noleap, 360d 
     
    5757#D- Here is set 71MPI*8OMP which is suitable for resolution 144x142x79 
    5858#D- Change to 31MPI*4OMP for resolution 96x95x39 
    59 ATM= (gcm_${ResolAtm}_orch22_${OptMode}.e, lmdz.x, 71MPI, 8OMP) 
     59ATM= (gcm_${ResolAtm}_orch4_${OptMode}.e, lmdz.x, 71MPI, 8OMP) 
    6060SRF= ("", "") 
    6161SBG= ("", "") 
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