Changeset 6669 for TOOLS/CPLRESTART/CreateRestartAtm4Oasis.bash

Timestamp:

10/27/23 13:32:18 (9 months ago)

Author:

omamce

Message:

O.M. : CPLRESTART

• More comments
• Python cleanup
• More use of nemo.py functionalities

File:

• TOOLS/CPLRESTART/CreateRestartAtm4Oasis.bash (modified) (10 diffs)

TOOLS/CPLRESTART/CreateRestartAtm4Oasis.bash

@@ -28 +28 @@
 # Usage exemples :
 # CreateRestartAtm4Oasis.bash --oce ORCA2.3    /ccc/store/cont003/dsm/p25sepul/IGCM_OUT/IPSLCM5A2/PROD/piControl/CM5A2.1.pi.00/ATM/Output/MO/CM5A2.1.pi.00_40100101_40191231_1M_histmth.nc
+
 # CreateRestartAtm4Oasis.bash --oce eORCA1.2   /ccc/store/cont003/gencmip6/p86maf/IGCM_OUT/IPSLCM6/PROD/piControl/CM61-LR-pi-03/ATM/Output/MO/CM61-LR-pi-03_23400101_23491231_1M_histmth.nc
+
 # CreateRestartAtm4Oasis.bash --oce ORCA2.3    /ccc/work/cont003/gencmip6/bedidil/SAVE8_ORCA2/STORE1/dynamico_grid.nc
+
 # CreateRestartAtm4Oasis.bash --oce ORCA2.3    /ccc/work/cont003/gencmip6/bedidil/SAVE9_ORCA2_DYN30_1MO/STORE1/histmth.nc
-# CreateRestartAtm4Oasis.bash --oce eORCA1.4.2 /ccc/scratch/cont003/gencmip6/p86caub/RUN_DIR/9114048_89294/ICOLOR-SROUT.11.NBP80.HISTMTH.89294/histday.nc
-# CreateRestartAtm4Oasis.bash --oce eORCA1.4.2 /ccc/scratch/cont003/gencmip6/p86caub/RUN_DIR/9620492_371319/ICOLOR-SROUT.11.NBP60.HISTMTH.371319/histday.nc
+
+# CreateRestartAtm4Oasis.bash --oce eORCA1.4.2 /ccc/store/cont003/gencmip6/p86caub/IGCM_OUT/ICOLMDZOR/DEVT/test/ICOLOR-SROUT.11.NBP60.HISTMTH/ATM/Output/DA/ICOLOR-SROUT.11.NBP60.HISTMTH_19950101_19950105_1D_histday.nc
+
 ## ===========================================================================
 ##
@@ -38 +42 @@
 ##
 ## ===========================================================================
-
+set +vx
 ##
 ## Command line parameters
@@ -57 +61 @@
     set +e
     R_IN=$(ccc_home -u igcmg --cccwork)/IGCM
-    TMPDIR=${CCCSCRATCHDIR}/TMP/CPLRESTART
+    TMPDIR=$(ccc_home --cccwork)/TMP/CPLRESTART
     SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR:-$(pwd)}}
     MpiRun="time ccc_mprun"
     PyRun="time ccc_mprun -n 1" # Needed to force python to run on one process only
-    module purge
-    module load hdf5
-    module load netcdf-c
-    module load nco # /4.9.1
-    module load cdo # /1.9.5
-    module load python3 # /3.7.2
-    module load datadir/igcmg
-    module list
+    source $(ccc_home -u igcmg)/MachineEnvironment/irene/env_atlas_irene
     set -e
     ;;
@@ -82 +79 @@
     ;;
 esac
-set -o verbose
-set -o xtrace
-set -e
 
 mkdir -p ${TMPDIR} 
-
 cd ${TMPDIR}
 
-while [[ ${1} = -* ]] ; do
+bVerbose='Yes'
+bXtrace='Yes'
+bError='Yes'
+
+while [[ ${1} = -* || ${1} = +* ]] ; do
+    #echo ${Red}"${1}"${Norm}
     case ${1} in
         ( -- ) shift ; break ;;
         ( -o   | --oce      ) shift ; OCE=${1}     ;; # Just needed to add information in the file and file name
         ( -c   | --comment  ) shift ; Comment=${1} ;; # Just needed to add information in the file
-        ( -v | --verbose    ) set -o verbose         ;;
-        ( -x | --xtrace     ) set -o xtrace          ;;
-        ( -xv | -vx         ) set -o xtrace verbose  ;;
-        ( -e                ) set -e                 ;;
-        ( -V | --noverbose  ) set +o verbose         ;;
-        ( -X | --noxtrace   ) set +o xtrace          ;;
-        ( -XV | -VX         ) set +o xtrace verbose  ;;
-        ( -E                ) set +e                 ;;
+        ( -v | --verbose    ) bVerbose='Yes'   ;;
+        ( -x | --xtrace     ) bXtrace='Yes'    ;;
+        ( -xv | -vx         ) bVerbose='Yes' ; bXtrace='Yes' ;;
+        ( -e                ) bError='Yes'     ;;
+        ( -V | +v | --noverbose  ) bVerbose='No'  ;;
+        ( -X | +x | --noxtrace   ) bXtrace='No'   ;;
+        ( -XV | -VX | +vx | +xv  ) bVerbose='No'; bXtrace='No' ;;
+        ( -E | +e           ) bError='No'    ;;
         ( -* ) echo ${Bold}"Unknown option : ${1}"${Norm} ; return 1 ;;
     esac
@@ -108 +106 @@
 done
 
-
-set -e
+[[ "X${bVerbose}" = "XYes" ]] && set -o verbose
+[[ "X${bVerbose}" = "XNo"  ]] && set +o verbose
+[[ "X${bXtrace}"  = "XYes" ]] && set -o xtrace
+[[ "X${bXtrace}"  = "XNo"  ]] && set +o xtrace
+[[ "X${bError}"   = "XYes" ]] && set -o errexit
+[[ "X${bError}"   = "XNo"  ]] && set +o errexit
 
 #AtmFile=${1:-/ccc/store/cont003/dsm/p25sepul/IGCM_OUT/IPSLCM5A2/PROD/piControl/CM5A2.1.pi.00/ATM/Output/MO/CM5A2.1.pi.00_40100101_40191231_1M_histmth.nc}
@@ -120 +122 @@
 FL_FMT=64bit
 
-
 Count=$(ncdump -h  ${AtmFile} | grep nvertex | wc -l)
 if [[ ${Count} -gt 0 ]] ; then
@@ -127 +128 @@
     ico_nbp=$( echo "sqrt(($dim_cell-2)/10)" | bc -l | sed 's/\..*//' )
     ATM=ICO${ico_nbp}
-    
 else
     # lat/lon
@@ -140 +140 @@
 fi
 
-echo "Version atmosphere : " ${ATM}
+echo ${Blue}"Version atmosphere : ${ATM}"${Norm}
 
 ##
@@ -148 +148 @@
 python3 ${SUBMIT_DIR}/create_flxat.py --IsUnstructured=${IsUnstructured} --input ${AtmFile} --output flxat.nc
 
-#ncks --fl_fmt=${FL_FMT} --append --history --variable COTAUXXU,COTAUYYU,COTAUZZU,COTAUXXV,COTAUYYV,COTAUZZV,COTOTRAI,COTOTSNO,COTOTEVA,COICEVAP,COQSRMIX,COQNSMIX,COSHFICE,CONSFICE,CODFLXDT,COCALVIN,COLIQRUN,COWINDSP,COTAUMOD tmp_flxat.nc flxat.nc
+# ncks --fl_fmt=${FL_FMT} --append --history --variable COTAUXXU,COTAUYYU,COTAUZZU,COTAUXXV,COTAUYYV,COTAUZZV,COTOTRAI,COTOTSNO,COTOTEVA,COICEVAP,COQSRMIX,COQNSMIX,COSHFICE,CONSFICE,CODFLXDT,COCALVIN,COLIQRUN,COWINDSP,COTAUMOD tmp_flxat.nc flxat.nc
 
 ##
@@ -169 +169 @@
 ## ===========================================================================
 mv flxat.nc flxat_${ATM}_maskFrom_${OCE}.nc
-ncks --history --variable COCALVIN flxat_${ATM}_maskFrom_${OCE}.nc icbrg_${ATM}_maskFrom_${OCE}.nc
-ncks --history --variable COCALVIN flxat_${ATM}_maskFrom_${OCE}.nc icshf_${ATM}_maskFrom_${OCE}.nc
+ncks --overwrite --history --variable COCALVIN flxat_${ATM}_maskFrom_${OCE}.nc icbrg_${ATM}_maskFrom_${OCE}.nc
+ncks --overwrite --history --variable COCALVIN flxat_${ATM}_maskFrom_${OCE}.nc icshf_${ATM}_maskFrom_${OCE}.nc
 
 ##
-
-echo "TMPDIR : ${TMPDIR}"
+echo ${Blue}"TMPDIR : ${TMPDIR}"${Norm}
 
 ## ===========================================================================