[4426] | 1 | slurmstepd-irene1464: error: task/cgroup: task[0] unable to set taskset '0x0' |
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| 2 | + SCRIPT_PID=90825 |
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| 3 | + set +x |
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| 4 | + /bin/ksh -x /tmp/jobstart.90766 |
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| 5 | Mon Mar 18 10:07:44 CET 2019 |
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| 6 | |
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| 7 | ==================================================== |
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| 8 | Where do we run ? irene1464 |
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| 9 | Linux irene1464 3.10.0-693.43.1.el7.x86_64 #1 SMP Thu Oct 11 14:14:26 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux |
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| 10 | ==================================================== |
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| 11 | |
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| 12 | Source machine dependent settings for irene Intel X-64 at TGCC |
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| 13 | 2019-03-18 10:07:45 --Debug1--> List of loaded modules: |
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| 14 | Currently Loaded Modulefiles: |
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| 15 | 1) ccc/1.0(default) 24) nco/4.6.0(default) |
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| 16 | 2) datadir/gencmip6 25) cdo/1.7.2rc6(default) |
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| 17 | 3) dfldatadir/gencmip6 26) ghostscript/9.19(default) |
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| 18 | 4) feature/mkl/lp64 27) ferret/7.2(default) |
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| 19 | 5) feature/mkl/sequential |
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| 20 | 6) mkl/17.0.6.256(default) |
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| 21 | 7) licsrv/intel |
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| 22 | 8) c/intel/17.0.6.256(default) |
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| 23 | 9) c++/intel/17.0.6.256(default) |
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| 24 | 10) fortran/intel/17.0.6.256(default) |
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| 25 | 11) flavor/buildcompiler/intel/17(default) |
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| 26 | 12) intel/17.0.6.256(default) |
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| 27 | 13) hwloc/1.11.3(default) |
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| 28 | 14) flavor/buildmpi/openmpi/2.0 |
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| 29 | 15) feature/openmpi/net/auto(default) |
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| 30 | 16) .tuning/openmpi/2.0.4 |
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| 31 | 17) feature/openmpi/mpi_compiler/intel(default) |
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| 32 | 18) mpi/openmpi/2.0.4(default) |
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| 33 | 19) flavor/hdf5/parallel |
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| 34 | 20) netcdf-c/4.6.0(default) |
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| 35 | 21) netcdf-fortran/4.4.4(default) |
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| 36 | 22) hdf5/1.8.20(default) |
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| 37 | 23) feature/bridge/heterogenous_mpmd |
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| 38 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825 |
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| 39 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825 |
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| 40 | |
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| 41 | 2019-03-18 10:07:46 --Debug1--> IGCM_config_CommonConfiguration |
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| 42 | 2019-03-18 10:07:46 --Debug1--> /ccc/work/cont003/gencmip6/devillim/modipsl_v14fev/config/IPSLCM6/CM61-LR-scen-ssp245-r5/POST_REDO/config.card |
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| 43 | |
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| 44 | 2019-03-18 10:07:46 --Debug1--> DefineArrayFromOption : config_UserChoices |
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| 45 | 2019-03-18 10:07:46 --------------Debug3--> JobName : CM61-LR-scen-ssp245-r5 |
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| 46 | 2019-03-18 10:07:46 --------------Debug3--> ExperimentName : ssp245 |
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| 47 | 2019-03-18 10:07:46 --------------Debug3--> SpaceName : PROD |
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| 48 | 2019-03-18 10:07:46 --------------Debug3--> LongName : IPSLCM6.1.8-LR |
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| 49 | 2019-03-18 10:07:46 --------------Debug3--> TagName : IPSLCM6 |
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| 50 | 2019-03-18 10:07:46 --------------Debug3--> ModelName : IPSL-CM6A-LR |
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| 51 | 2019-03-18 10:07:46 --------------Debug3--> Member : r5i1p1f1 |
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| 52 | 2019-03-18 10:07:46 --------------Debug3--> ExpType : IPSLCM/scenario_CMIP6 |
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| 53 | 2019-03-18 10:07:46 --------------Debug3--> CalendarType : leap |
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| 54 | 2019-03-18 10:07:46 --------------Debug3--> DateBegin : 2015-01-01 |
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| 55 | 2019-03-18 10:07:46 --------------Debug3--> DateEnd : 2100-12-31 |
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| 56 | 2019-03-18 10:07:46 --------------Debug3--> ORCA_version : eORCA1.2 |
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| 57 | 2019-03-18 10:07:46 --------------Debug3--> PeriodLength : 1Y |
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| 58 | |
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| 59 | 2019-03-18 10:07:46 --Debug1--> DefineArrayFromOption : config_Ensemble |
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| 60 | |
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| 61 | 2019-03-18 10:07:46 --Debug1--> Warning with readding of config_Ensemble variable in /ccc/work/cont003/gencmip6/devillim/modipsl_v14fev/config/IPSLCM6/CM61-LR-scen-ssp245-r5/POST_REDO/config.card. |
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| 62 | 2019-03-18 10:07:46 --Debug1--> Warning: Section Ensemble not found |
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| 63 | |
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| 64 | 2019-03-18 10:07:46 --Debug1--> DefineArrayFromOption : config_Post |
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| 65 | 2019-03-18 10:07:46 --------------Debug3--> ParserXIOS : FALSE |
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| 66 | 2019-03-18 10:07:46 --------------Debug3--> RebuildFrequency : NONE |
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| 67 | 2019-03-18 10:07:46 --------------Debug3--> PackFrequency : 1Y |
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| 68 | 2019-03-18 10:07:46 --------------Debug3--> LightRestartPack : FALSE |
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| 69 | 2019-03-18 10:07:46 --------------Debug3--> TimeSeriesFrequency : 1Y |
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| 70 | 2019-03-18 10:07:46 --------------Debug3--> SeasonalFrequency : 1Y |
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| 71 | 2019-03-18 10:07:46 --------------Debug3--> MetricsPCMDI : FALSE |
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| 72 | 2019-03-18 10:07:46 --------------Debug3--> SeasonalFrequencyOffset : 0 |
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| 73 | |
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| 74 | unload module dfldatadir/gencmip6 (Data Directory) |
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| 75 | unload module datadir/gencmip6 (Data Directory) |
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| 76 | load module datadir/gencmip6 (Data Directory) |
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| 77 | load module dfldatadir/gencmip6 (Data Directory) |
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| 78 | 2019-03-18 10:07:47 --Debug1--> Load dfldatadir for forced gencmip6 project |
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| 79 | 2019-03-18 10:07:47 --Debug1--> R_OUT has been defined = /ccc/store/cont003/gencmip6/devillim/IGCM_OUT |
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| 80 | 2019-03-18 10:07:47 --Debug1--> R_BUF has been defined = /ccc/scratch/cont003/gencmip6/devillim/IGCM_OUT |
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| 81 | 2019-03-18 10:07:47 --Debug1--> R_FIG has been defined = /ccc/work/cont003/gencmip6/devillim/IGCM_OUT |
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| 82 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/REBUILD |
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| 83 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE |
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| 84 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE |
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| 85 | IGCM_sys_Get : /l liste_file[*] /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE |
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| 86 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE |
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| 87 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE |
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| 88 | IGCM_sys_Get : /l liste_file[*] /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE |
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| 89 | IGCM_sys_ncrcat : --hst -v nav_lon,nav_lat,olevel,time_counter,time_centered,time_centered_bounds,thetao CM61-LR-scen-ssp245-r5_20150101_20991231_1M_thetao.nc CM61-LR-scen-ssp245-r5_21000101_21001231_1M_grid_T.nc CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc |
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| 90 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_20991231_1M_thetao.nc |
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| 91 | IGCM_sys_Put_Out : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc |
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| 92 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO |
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| 93 | IGCM_sys_Chmod : 444 /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc |
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| 94 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc |
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| 95 | IGCM_sys_ncrcat : --hst -v nav_lon,nav_lat,olevel,time_counter,time_centered,time_centered_bounds,so CM61-LR-scen-ssp245-r5_20150101_20991231_1M_so.nc CM61-LR-scen-ssp245-r5_21000101_21001231_1M_grid_T.nc CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc |
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| 96 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_20991231_1M_so.nc |
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| 97 | IGCM_sys_Put_Out : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc |
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| 98 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO |
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| 99 | IGCM_sys_Chmod : 444 /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc |
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| 100 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc |
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| 101 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_21000101_21001231_1M_grid_T.nc |
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| 102 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_YE |
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| 103 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO |
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| 104 | IGCM_sys_Put_Dods : OCE/Analyse/TS_MO |
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| 105 | IGCM_sys_Dods_Rm : OCE/Analyse/TS_MO |
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| 106 | /ccc/store/cont003/thredds/devillim/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO |
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| 107 | IGCM_sys_Dods_Cp : OCE/Analyse/TS_MO |
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| 108 | - store : /ccc/store/cont003/thredds/devillim/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO == IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO |
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| 109 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_DA |
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| 110 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_HF |
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| 111 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_INS |
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| 112 | IGCM_sys_RmRunDir : -Rf /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825 |
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| 113 | Mon Mar 18 10:33:16 CET 2019 |
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| 114 | ########## ########## ########## ########## ########## ########## ########## ########## |
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| 115 | Execution Sum Up |
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| 116 | ########## ########## ########## ########## ########## ########## ########## ########## |
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| 117 | Jobid : 1614793 |
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| 118 | Jobname : TS |
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| 119 | User : devillim |
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| 120 | Account : dcpcmip6@skylake |
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| 121 | Limits : time = 22:14:00 , memory/task = 3750 Mo |
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| 122 | Date : submit = 18/03/2019 10:07:38 , start = 18/03/2019 10:07:40 , end = 19/03/2019 08:21:43 |
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| 123 | Execution : partition = skylake , QoS = normal , Comment = (null) |
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| 124 | Resources : ntasks = 1 , cpus/task = 4 , ncpus = 4 , nodes = 1 |
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| 125 | Nodes=irene1464 CPU_IDs=20-23 Mem=15000 GRES_IDX= |
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| 126 | |
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| 127 | Memory / step |
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| 128 | -------------- |
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| 129 | Resident Size (Mo) Virtual Size (Go) |
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| 130 | JobID Max (Node:Task) AveTask Max (Node:Task) AveTask |
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| 131 | ----------- ------------------------ ------- -------------------------- ------- |
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| 132 | |
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| 133 | Accounting / step |
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| 134 | ------------------ |
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| 135 | |
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| 136 | JobID JobName Ntasks Ncpus Nnodes Layout Elapsed User System Eff State |
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| 137 | ------------ ------------ ------ ----- ------ ------- ------- ------- ------ --- ----- |
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| 138 | 1614793 TS - 4 1 - 00:25:41 (100%) - - - - |
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| 139 | ########## ########## ########## ########## ########## ########## ########## ########## |
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