source: CMIP6/ScenarioMIP/CM61-LR-scen-ssp245-r5/POST_REDO/OutScript/create_ts.21001231.Chunck3D.OCE.Post_1M_grid_T.out @ 4426

Last change on this file since 4426 was 4426, checked in by devillim, 5 years ago
File size: 9.6 KB
Line 
1slurmstepd-irene1464: error: task/cgroup: task[0] unable to set taskset '0x0'
2+ SCRIPT_PID=90825
3+ set +x
4+ /bin/ksh -x /tmp/jobstart.90766
5Mon Mar 18 10:07:44 CET 2019
6
7====================================================
8Where do we run ? irene1464
9Linux irene1464 3.10.0-693.43.1.el7.x86_64 #1 SMP Thu Oct 11 14:14:26 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
10====================================================
11
12Source machine dependent settings for irene Intel X-64 at TGCC
132019-03-18 10:07:45 --Debug1--> List of loaded modules:
14Currently Loaded Modulefiles:
15 1) ccc/1.0(default)                             24) nco/4.6.0(default)         
16 2) datadir/gencmip6                             25) cdo/1.7.2rc6(default)     
17 3) dfldatadir/gencmip6                          26) ghostscript/9.19(default) 
18 4) feature/mkl/lp64                             27) ferret/7.2(default)       
19 5) feature/mkl/sequential                       
20 6) mkl/17.0.6.256(default)                     
21 7) licsrv/intel                                 
22 8) c/intel/17.0.6.256(default)                 
23 9) c++/intel/17.0.6.256(default)               
2410) fortran/intel/17.0.6.256(default)           
2511) flavor/buildcompiler/intel/17(default)       
2612) intel/17.0.6.256(default)                   
2713) hwloc/1.11.3(default)                       
2814) flavor/buildmpi/openmpi/2.0                 
2915) feature/openmpi/net/auto(default)           
3016) .tuning/openmpi/2.0.4                       
3117) feature/openmpi/mpi_compiler/intel(default) 
3218) mpi/openmpi/2.0.4(default)                   
3319) flavor/hdf5/parallel                         
3420) netcdf-c/4.6.0(default)                     
3521) netcdf-fortran/4.4.4(default)               
3622) hdf5/1.8.20(default)                         
3723) feature/bridge/heterogenous_mpmd             
38IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825
39IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825
40
412019-03-18 10:07:46 --Debug1--> IGCM_config_CommonConfiguration
422019-03-18 10:07:46 --Debug1--> /ccc/work/cont003/gencmip6/devillim/modipsl_v14fev/config/IPSLCM6/CM61-LR-scen-ssp245-r5/POST_REDO/config.card
43
442019-03-18 10:07:46 --Debug1--> DefineArrayFromOption : config_UserChoices
452019-03-18 10:07:46 --------------Debug3--> JobName : CM61-LR-scen-ssp245-r5
462019-03-18 10:07:46 --------------Debug3--> ExperimentName : ssp245
472019-03-18 10:07:46 --------------Debug3--> SpaceName : PROD
482019-03-18 10:07:46 --------------Debug3--> LongName : IPSLCM6.1.8-LR
492019-03-18 10:07:46 --------------Debug3--> TagName : IPSLCM6
502019-03-18 10:07:46 --------------Debug3--> ModelName : IPSL-CM6A-LR
512019-03-18 10:07:46 --------------Debug3--> Member : r5i1p1f1
522019-03-18 10:07:46 --------------Debug3--> ExpType : IPSLCM/scenario_CMIP6
532019-03-18 10:07:46 --------------Debug3--> CalendarType : leap
542019-03-18 10:07:46 --------------Debug3--> DateBegin : 2015-01-01
552019-03-18 10:07:46 --------------Debug3--> DateEnd : 2100-12-31
562019-03-18 10:07:46 --------------Debug3--> ORCA_version : eORCA1.2
572019-03-18 10:07:46 --------------Debug3--> PeriodLength : 1Y
58
592019-03-18 10:07:46 --Debug1--> DefineArrayFromOption : config_Ensemble
60
612019-03-18 10:07:46 --Debug1--> Warning with readding of config_Ensemble variable in /ccc/work/cont003/gencmip6/devillim/modipsl_v14fev/config/IPSLCM6/CM61-LR-scen-ssp245-r5/POST_REDO/config.card.
622019-03-18 10:07:46 --Debug1--> Warning: Section Ensemble not found
63
642019-03-18 10:07:46 --Debug1--> DefineArrayFromOption : config_Post
652019-03-18 10:07:46 --------------Debug3--> ParserXIOS : FALSE
662019-03-18 10:07:46 --------------Debug3--> RebuildFrequency : NONE
672019-03-18 10:07:46 --------------Debug3--> PackFrequency : 1Y
682019-03-18 10:07:46 --------------Debug3--> LightRestartPack : FALSE
692019-03-18 10:07:46 --------------Debug3--> TimeSeriesFrequency : 1Y
702019-03-18 10:07:46 --------------Debug3--> SeasonalFrequency : 1Y
712019-03-18 10:07:46 --------------Debug3--> MetricsPCMDI : FALSE
722019-03-18 10:07:46 --------------Debug3--> SeasonalFrequencyOffset : 0
73
74unload module dfldatadir/gencmip6 (Data Directory)
75unload module datadir/gencmip6 (Data Directory)
76load module datadir/gencmip6 (Data Directory)
77load module dfldatadir/gencmip6 (Data Directory)
782019-03-18 10:07:47 --Debug1--> Load dfldatadir for forced gencmip6 project
792019-03-18 10:07:47 --Debug1--> R_OUT has been defined = /ccc/store/cont003/gencmip6/devillim/IGCM_OUT
802019-03-18 10:07:47 --Debug1--> R_BUF has been defined = /ccc/scratch/cont003/gencmip6/devillim/IGCM_OUT
812019-03-18 10:07:47 --Debug1--> R_FIG has been defined = /ccc/work/cont003/gencmip6/devillim/IGCM_OUT
82IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/REBUILD
83IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE
84IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE
85IGCM_sys_Get : /l liste_file[*] /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE
86IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE
87IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE
88IGCM_sys_Get : /l liste_file[*] /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825/OCE
89IGCM_sys_ncrcat : --hst -v nav_lon,nav_lat,olevel,time_counter,time_centered,time_centered_bounds,thetao CM61-LR-scen-ssp245-r5_20150101_20991231_1M_thetao.nc CM61-LR-scen-ssp245-r5_21000101_21001231_1M_grid_T.nc CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc
90IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_20991231_1M_thetao.nc
91IGCM_sys_Put_Out : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc
92IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO
93IGCM_sys_Chmod : 444 /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc
94IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_thetao.nc
95IGCM_sys_ncrcat : --hst -v nav_lon,nav_lat,olevel,time_counter,time_centered,time_centered_bounds,so CM61-LR-scen-ssp245-r5_20150101_20991231_1M_so.nc CM61-LR-scen-ssp245-r5_21000101_21001231_1M_grid_T.nc CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc
96IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_20991231_1M_so.nc
97IGCM_sys_Put_Out : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc
98IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO
99IGCM_sys_Chmod : 444 /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc
100IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_20150101_21001231_1M_so.nc
101IGCM_sys_Rm : CM61-LR-scen-ssp245-r5_21000101_21001231_1M_grid_T.nc
102IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_YE
103IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO
104IGCM_sys_Put_Dods : OCE/Analyse/TS_MO
105IGCM_sys_Dods_Rm : OCE/Analyse/TS_MO
106/ccc/store/cont003/thredds/devillim/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO
107IGCM_sys_Dods_Cp : OCE/Analyse/TS_MO
108- store : /ccc/store/cont003/thredds/devillim/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO == IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_MO
109IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_DA
110IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_HF
111IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r5/OCE/Analyse/TS_INS
112IGCM_sys_RmRunDir : -Rf /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1614793_90825
113Mon Mar 18 10:33:16 CET 2019
114########## ########## ########## ########## ########## ########## ########## ##########
115Execution Sum Up
116########## ########## ########## ########## ########## ########## ########## ##########
117Jobid     : 1614793
118Jobname   : TS
119User      : devillim
120Account   : dcpcmip6@skylake
121Limits    : time = 22:14:00 , memory/task = 3750 Mo
122Date      : submit = 18/03/2019 10:07:38 , start = 18/03/2019 10:07:40 , end = 19/03/2019 08:21:43
123Execution : partition = skylake , QoS = normal , Comment = (null)
124Resources : ntasks = 1 , cpus/task = 4 , ncpus = 4 , nodes = 1
125   Nodes=irene1464 CPU_IDs=20-23 Mem=15000 GRES_IDX=
126 
127Memory / step
128--------------
129                          Resident Size (Mo)                     Virtual Size (Go)
130JobID            Max     (Node:Task)       AveTask    Max  (Node:Task)            AveTask
131-----------      ------------------------  -------    --------------------------  -------
132
133Accounting / step
134------------------
135
136JobID           JobName                  Ntasks  Ncpus Nnodes  Layout       Elapsed               User         System     Eff  State
137------------    ------------             ------  ----- ------  -------      -------               -------      ------     ---  -----
1381614793         TS                            -      4      1        -     00:25:41   (100%)            -            -      -  -
139########## ########## ########## ########## ########## ########## ########## ##########
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