Changes between Version 36 and Version 37 of Documentation/UserGuide/TestCase1

Timestamp:

2022-01-17T16:44:25+01:00 (2 years ago)

Author:

jgipsl

Comment:

--

Documentation/UserGuide/TestCase1

@@ -20 +20 @@
 === Executable orchidee_ol ===
 Install and compile the model to get the executable orchidee_ol. You can use orchidee_ol_prod or orchidee_ol_debug depending on the compilation you activated. Read more here: wiki:Documentation/UserGuide/InstallingORCHIDEEBasic
+{{{
+mkdir RUN1; cd RUN1
+ln -s /pathtoyourinstallation/modipsl/bin/orchidee_ol_prod .
+}}}
 
 === Input netcdf files === 
-|| '''Link file from shared repository''' || '''File name expected by ORCHIDEE''' ||
-|| ln -s ${R_IN}/SRF/METEO/CRU-NCEP/v5.3.2/twodeg/cruncep_twodeg_2000.nc || forcing_file.nc || 
-|| ln -s ${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_2000.nc  || PFTmap.nc || 
-|| ln -s ${R_IN}/SRF/SOIL/soils_param.nc || soils_param.nc || 
-|| ln -s ${R_IN}/SRF/SOIL/soil_bulk_and_ph.nc || soil_bulk_and_ph.nc || 
-|| ln -s ${R_IN}/SRF/cartepente2d_15min.nc || cartepente2d_15min.nc || 
-|| ln -s ${R_IN}/SRF/reftemp.nc || reftemp.nc || 
-|| ln -s ${R_IN}/SRF/ROUTING/routing.nc || routing.nc || 
-|| ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_2000.nc  || nfert_pasture.nc || 
-|| ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_2000.nc || nfert_cropland.nc || 
-|| ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_2000.nc || nmanure_pasture.nc || 
-|| ln -s ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_2000.nc || nmanure_cropland.nc || 
-|| ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_2000.nc || ndep_nhx.nc || 
-|| ln -s ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_2000.nc || ndep_noy.nc || 
-|| ln -s ${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc || bnf.nc || 
+Input files are stored on the shared repository IGCM, here named by R_IN. Set R_IN depending on your machine and link the files below.  
+* at ciclad/climserv: export R_IN=/projsu/igcmg/IGCM
+* at obelix: export R_IN=/home/orchideeshare/igcmg/IGCM 
+* at IDRIS and TGCC see ORCHIDEE training courses or http://forge.ipsl.jussieu.fr/igcmg_doc/wiki/Doc/ComputingCenters/SharedFiles
+* Note that if the shell in your terminal is csh or tcsh, use set instead of export
+{{{
+Link file from shared repository                                                             File name expected by ORCHIDEE
 
-where
-* R_IN=/projsu/igcmg/IGCM at ciclad/climserv
-* R_IN=/home/orchideeshare/igcmg/IGCM at obelix
-* IDRIS, TGCC see ORCHIDEE training courses or http://forge.ipsl.jussieu.fr/igcmg_doc/wiki/Doc/ComputingCenters/SharedFiles
-* or download using wget, replace R_IN by https://vesg.ipsl.upmc.fr/thredds/catalog/igcmg/IGCM/catalog.html
-* this test case uses input files for year 2000. You can replace 2000 by the year of your choice between 1901-2010
+ln -s  ${R_IN}/SRF/METEO/CRU-NCEP/v5.3.2/twodeg/cruncep_twodeg_2000.nc                       forcing_file.nc
+ln -s  ${R_IN}/SRF/PFTMAPS/CMIP6/ESA-LUH2v2/historical/15PFT.v2/PFTmap_2000.nc               PFTmap.nc 
+ln -s  ${R_IN}/SRF/SOIL/soils_param.nc                                                       soils_param.nc
+ln -s  ${R_IN}/SRF/SOIL/soil_bulk_and_ph.nc                                                  soil_bulk_and_ph.nc 
+ln -s  ${R_IN}/SRF/cartepente2d_15min.nc                                                     cartepente2d_15min.nc 
+ln -s  ${R_IN}/SRF/reftemp.nc                                                                reftemp.nc
+ln -s  ${R_IN}/SRF/ROUTING/routing.nc                                                        routing.nc 
+ln -s  ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_pasture_2000.nc   nfert_pasture.nc
+ln -s  ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/synthetic/historical/Nfer_cropland_2000.nc  nfert_cropland.nc 
+ln -s  ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_pasture_2000.nc   nmanure_pasture.nc 
+ln -s  ${R_IN}/SRF/NITROGEN/N_FERTILISATION/NMIP/manure/historical/Nmanure_cropland_2000.nc  nmanure_cropland.nc 
+ln -s  ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_nhx_2000.nc          ndep_nhx.nc
+ln -s  ${R_IN}/SRF/NITROGEN/N_DEPOSITION/CCMI_ndep/historical/CCMI_ndep_noy_2000.nc          ndep_noy.nc 
+ln -s  ${R_IN}/SRF/NITROGEN/BNF/bnf_1850.nc                                                  bnf.nc 
+}}}
+
+The files can also be download using wget, replace R_IN by https://vesg.ipsl.upmc.fr/thredds/catalog/igcmg/IGCM/catalog.html[[BR]]
+In this test case, input files for year 2000 are used. You can replace 2000 by the year of your choice between 1901-2010
 
 === xml files for running with XIOS ===