Changes between Version 15 and Version 16 of DevelopmentActivities/Xios

Timestamp:

2014-02-04T12:00:29+01:00 (10 years ago)

Author:

jgipsl

Comment:

--

DevelopmentActivities/Xios

@@ -16 +16 @@
 > cd modipsl/util
 
-Add extraction of XIOS by adding following line in mod.def : use XIOS revision 446, latest revision 452 of XIOS do not work with ORCHIDEE, at curie :
-#-C- ORCHIDEE_trunk  XIOS/trunk                               446     12 XIOS               modeles
+Add extraction of XIOS by adding following line in mod.def : (XIOS revision 446, 455 and 471 have been tested successfully with ORCHIDEE, revision 452 and 472 do not work) :
+#-C- ORCHIDEE_trunk  XIOS/trunk                               471     12 XIOS               modeles
 
 > ./model ORCHIDEE_trunk
@@ -23 +23 @@
 
 
- * Adapt compiling with netcdf parallel
+
+ * Adapt compiling with netcdf parallel. Since revision [1875] there is no need to modify makefiles or arch files. Only loading parallel netcf and hdf5 is needed. Before compiling do following:
 {{{
-# Change netcdf in modipsl/util/AA_make.gdef to following :
-
-#-Q- curie  NCDF_INC = /usr/local/netcdf-4.2_hdf5_parallel/include
-#-Q- curie  NCDF_LIB = -L/usr/local/netcdf-4.2_hdf5_parallel/lib -lnetcdff -lnetcdf -lstdc++
-
-cd ../modeles/ORCHIDEE/arch
-# Change netcdf in arch-X64_CURIE.path to following : 
-NETCDF_LIBDIR="/usr/local/netcdf-4.2_hdf5_parallel/lib -lnetcdff -lnetcdf -lstdc++"
-NETCDF_INCDIR=/usr/local/netcdf-4.2_hdf5_parallel/include
-
-# Regenerate makefiles
-cd ../../../util
-./ins_make
+module unload netcdf hdf5
+module load hdf5/1.8.9_parallel
+module load netcdf/4.2_hdf5_parallel
 }}}
 
@@ -89 +80 @@
 
 
-'''Note : Sometimes following error message appears when linking '''
-
-{{{
-ar: creating /ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/tmp_src/lib__fcm__dim2_driver.a
-mpif90 -o dim2_driver.exe /ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/.config/obj/driver.o -L/ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/lib -l__fcm__dim2_driver -i4 -r8 -auto -L/usr/local/Intel_compilers/c/composer_xe_2011_sp1.9.293/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lm -O3 -fp-model precise -L/usr/local/netcdf-4.2_hdf5_parallel/lib -lnetcdff -lnetcdf -lstdc++ -L/ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/../../lib -L/ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/../XIOS/lib -lxios -lioipsl -lnetcdf
-/usr/local/netcdf-4.2_hdf5_parallel/lib/libnetcdf.so: undefined reference to `H5Pset_dxpl_mpio'
-/usr/local/netcdf-4.2_hdf5_parallel/lib/libnetcdf.so: undefined reference to `H5Pset_fapl_mpio'
-/usr/local/netcdf-4.2_hdf5_parallel/lib/libnetcdf.so: undefined reference to `H5Pset_fapl_mpiposix'
-fcm_internal load failed (256)
-gmake[1]: *** [dim2_driver.exe] Error 1
-}}}
-
-Solution, load modules as in XIOS : 
-{{{
-module unload netcdf
-module unload hdf5
-module load netcdf/4.2_hdf5_parallel
-module load hdf5/1.8.9_parallel
-}}}
-
-
-
 = Implementation =
 In the definition phase using IOIPSL, in the call to histdef, an operator is declared on the field. Using XIOS, some of these operators will be set in the xml file (which contains the definition phase) and some will be applied to the variables in the call to xios_orchidee_send_field.[[BR]]