Changes between Version 14 and Version 15 of DevelopmentActivities/Xios

Timestamp:

2014-01-31T11:16:51+01:00 (10 years ago)

Author:

jgipsl

Comment:

--

DevelopmentActivities/Xios

@@ -88 +88 @@
 }}}
 
+
+'''Note : Sometimes following error message appears when linking '''
+
+{{{
+ar: creating /ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/tmp_src/lib__fcm__dim2_driver.a
+mpif90 -o dim2_driver.exe /ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/.config/obj/driver.o -L/ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/lib -l__fcm__dim2_driver -i4 -r8 -auto -L/usr/local/Intel_compilers/c/composer_xe_2011_sp1.9.293/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lm -O3 -fp-model precise -L/usr/local/netcdf-4.2_hdf5_parallel/lib -lnetcdff -lnetcdf -lstdc++ -L/ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/../../lib -L/ccc/work/cont003/dsm/p86ghatt/XIOS/Validation/modipsl/modeles/ORCHIDEE/../XIOS/lib -lxios -lioipsl -lnetcdf
+/usr/local/netcdf-4.2_hdf5_parallel/lib/libnetcdf.so: undefined reference to `H5Pset_dxpl_mpio'
+/usr/local/netcdf-4.2_hdf5_parallel/lib/libnetcdf.so: undefined reference to `H5Pset_fapl_mpio'
+/usr/local/netcdf-4.2_hdf5_parallel/lib/libnetcdf.so: undefined reference to `H5Pset_fapl_mpiposix'
+fcm_internal load failed (256)
+gmake[1]: *** [dim2_driver.exe] Error 1
+}}}
+
+Solution, load modules as in XIOS : 
+{{{
+module unload netcdf
+module unload hdf5
+module load netcdf/4.2_hdf5_parallel
+module load hdf5/1.8.9_parallel
+}}}
+
+
+
 = Implementation =
 In the definition phase using IOIPSL, in the call to histdef, an operator is declared on the field. Using XIOS, some of these operators will be set in the xml file (which contains the definition phase) and some will be applied to the variables in the call to xios_orchidee_send_field.[[BR]]