Changes between Version 152 and Version 153 of DevelopmentActivities/ORCHIDEE-DOFOCO

Timestamp:

2017-07-06T14:10:53+02:00 (7 years ago)

Author:

alanso

Comment:

--

DevelopmentActivities/ORCHIDEE-DOFOCO

@@ -25 +25 @@
 
 == How do I run this version? ==
-For the moment, the instructions for ORCHIDEE-DOFOCO can be used to download and compile the model (see https://forge.ipsl.jussieu.fr/orchidee/wiki/Documentation/UserGuide/ORCHIDEEDOFOCOInstall). Use this run.def for a set-up with 13 MTCs and no age classes (as the trunk) or this run.def to make use of 13 MTC and 4 age classes for each forest MTC, thus resulting in 37 PFTs.
+For the moment, the instructions for ORCHIDEE-DOFOCO can be used to download and extract the model (see https://forge.ipsl.jussieu.fr/orchidee/wiki/Documentation/UserGuide/ORCHIDEEDOFOCOInstall). Use this run.def for a set-up with 13 MTCs and no age classes (as the trunk) or this run.def to make use of 13 MTC and 4 age classes for each forest MTC, thus resulting in 37 PFTs.
+
+When running the model, the default setting should be XIOS. Thus, compile the model with gmake with_xios. Note that there currently is a bug on obelix when compiling XIOS. It keeps re-compiling, even though no changes has been made to XIOS. To avoid this and reduce compiling time, change the following line in the Makefile from 
+{{{
+with_xios : xios ioipsl driver_xios verif
+}}}
+to
+{{{
+with_xios : ioipsl driver_xios verif
+}}}
+Once the model is compiled, make sure that XIOS=y in orchidee_ol.card.
+
+Moreover, new output files for ORCHIDEE have been specified within the code. In order to obtain these, when you run the model, the files need to be added to both the cards and drivers for either stomate or sechiba. Below is given an example for stomate_history_4dim).
+[[BR]]
+In stomate.driver, add the following within the shown if statement:
+{{{
+    # Modify file_def_orchidee.def if XIOS is activated
+    if [ X${orchidee_ol_UserChoices_XIOS} = Xy ] ; then
+        # Modify file_def_orchidee.xml
+        IGCM_comp_modifyXmlFile nonblocker file_def_orchidee.xml stomate3 enabled ${stomate_enabled}
+        IGCM_comp_modifyXmlFile nonblocker file_def_orchidee.xml stomate3 output_freq ${stomate_freq}
+    fi
+}}}
+In stomate.card add the new file to list of output files:
+{{{
+[OutputFiles]
+List=   (stomate_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_history.nc, Post_1M_stomate_history) \
+        (stomate_ipcc_history.nc, ${R_OUT_SBG_O_M}/${PREFIX}_1M_stomate_ipcc_history.nc, Post_1M_stomate_ipcc_history),\
+        (stomate_history_4dim.nc, ${R_OUT_SBG_O_M}$ {PREFIX}_1M_stomate_history_4dim.nc, NONE)
+}}}
 [[BR]]
 [[BR]]