Changes between Version 60 and Version 61 of DevelopmentActivities/ORCHIDEE-CNP/howtoSPINAL

Timestamp:

2018-02-27T17:31:13+01:00 (7 years ago)

Author:

dgoll

Comment:

--

DevelopmentActivities/ORCHIDEE-CNP/howtoSPINAL

@@ -19 +19 @@
 
 == 1.2 tell libIGCM about the new input files (they are stored on the IMBALANCE-P disk on obelix) ==
-modify the variable "ListNonDel" in COMP/stomate.card:
-{{{
-ListNonDel= (/home/surface3/common/CNP_files/revXX/lithology.nc, .), \
-(/home/surface3/common/CNP_files/revXX/USDA_SoilSuborder.nc, .), \
-(/home/surface3/common/CNP_files/LMDzINCA_DEP_2000.nc, .), \
-(/XXX/deposition_1850.nc,  deposition.nc)
+for deposition file (path,etc) see here: [https://forge.ipsl.jussieu.fr/orchidee/wiki/DevelopmentActivities/inputRoutine]
+
+add/exchange these files in list of "[InitialStateFiles]" in COMP/sechiba.card:
+{{{
+(/home/surface3/common/CNP_files/rev02/USDA_SoilSuborder.nc, USDA_SoilSuborder.nc), \
+(/home/surface3/common/CNP_files/rev02/soils_param.nc, soils_param.nc), \
+(/home/surface3/common/CNP_files/rev02/lithology.nc, lithology.nc)
 }}}
 REMARK: make sure there are no blanks behind the "\"!
 
-for deposition file (path,etc) see here: [https://forge.ipsl.jussieu.fr/orchidee/wiki/DevelopmentActivities/inputRoutine]
-
-add/exchange these files in list of "[InitialStateFiles]" in COMP/sechiba.card:
-{{{
-(/home/surface3/common/CNP_files/revXX/soils_param.nc, soils_param.nc), \
-(/home/surface3/common/CNP_files/revXX/soils_param_usda_new.nc, soils_param_usda.nc), \
-(/XXX/deposition_1850.nc,  deposition.nc), \
+add/exchange these files in list of "[BoundaryFiles]" in COMP/sechiba.card:
+{{{
+(/home/surface3/common/CNP_files/rev02/USDA_SoilSuborder.nc, USDA_SoilSuborder.nc), \
+(/home/surface3/common/CNP_files/rev02/soils_param.nc, soils_param.nc), \
+(/home/surface3/common/CNP_files/rev02/lithology.nc, lithology.nc), \
+(/home/surface3/common/CNP_files/rev02/deposition.nc, deposition.nc),\
 }}}
 
@@ -42 +42 @@
 SOILCLASS_FILE   = soils_param_usda.nc
 }}}
-
-REMARK: Although the file with N deposition is used in sechiba we must add the file to the stomate.card. 
-This is needed to ensure it is copied when we restart from a simulation with impose_cn. In that case, the N deposition variable will not be present in the sechiba_restart_out.nc but the libIGCM assumes all sechiba variables are present.
-
-REMARK: On obelix, one cannot have the same file in sechiba.card and stomate.card as it is not allowed to overwrite any file.
 
 
@@ -54 +49 @@
 {{{
 [BoundaryFiles]
-List=   (/ccc/work/cont003/dsm/p529goll/AmaFACE_forcing/v01/deposition/deposition_${CyclicYear}.nc, deposition.nc)
-}}}
-
-as well as(!) in COMP/stomate.card:
-{{{
-ListNonDel= (${R_IN}/SRF/reftemp.nc, .),\
-(/home/surface3/common/CNP_files/revXX/lithology.nc, .), \
-(/home/surface3/common/CNP_files/LMDzINCA_DEP_2000.nc, .), \
-(/XXX/deposition_${CyclicYear}.nc, .)
-}}}
-
+List=   (/home/surface3/common/CNP_files/deposition/deposition_${CyclicYear}.nc, deposition.nc)
+}}}
 
 
@@ -94 +80 @@
 
 === 1.3.2 other
-
-set the IO frequency to avoid crashes in PARAM/run.def
-{{{
-# Writefrequency in seconds in sechiba_history.nc
-# default = 86400.0
-WRITE_STEP = 1800.0
-
-# Writefrequency in days in stomate_history.nc
-# default = 10.
-STOMATE_HIST_DT = 1
-}}}
-
 Make sure the 11-layer hydrology &  scheme is used by settting it explicitly to "y" ; this is the default hydrological scheme in ORCHIDEE-CN-P (r4166). If it is on "_AUTO_" it will cause a stop of the orchidee executable. 
 For activating the 11-layer hydrology see here [http://forge.ipsl.jussieu.fr/orchidee/wiki/DevelopmentActivities/ORCHIDEE-CNP/activate11HYDRO].
@@ -111 +85 @@
 add a set of parameters with their values from the ORCHIDEE-CAN components as well as for the nutrient components to the PARAM/run.def. Make sure you do not overwrite PARAM/run.def but add the additional parameters. 
 {{{
-cp /home/surface3/common/CNP_files/revXX/run.def PARAM/run.def
+cp /home/surface3/common/CNP_files/rev02/run.def PARAM/run.def
 }}}