| 1 | | = Work of Thomas on NH3 = |
| 2 | | |
| 3 | | == Evaluation of ammonia emissions results calculated by the model (Fertilizer =0) == |
| 4 | | This has been done with rev 4164 |
| | 1 | = Work of Thomas Audoux carried out during an internship on NH3 = |
| | 2 | This has been done with rev 4164. My work is divided in 3 parts, the first part corresponds to the work done for the internship report. Then, the second part is a brief bibliography about emission factors. Finally, the last part corresponds to the second part of my internship: analyzing ammonia emission factor. |
| | 3 | == I. Evaluation of ammonia emissions results calculated by the model ( Fertilizer =0 ) == |
| | 4 | |
| | 5 | [https://forge.ipsl.jussieu.fr/orchidee/attachment/wiki/DevelopmentActivities/ORCHIDEE-CN/NH3/Rapport%20de%20stage%20final.pdf Internship_report.pdf] |
| | 6 | |
| 33 | | * Files |
| 34 | | . The script "script_calcul_parameters.ksh" used in order to create files of Temperature, Humidity and pH of each site in function of time listed in : [[BR]]/home/users/taudoux/documents/Results/Parameters/T2M/SITES/;[[BR]]/home/users/taudoux/documents/Results/Parameters/LITTERHUM/SITES/;[[BR]]/home/users/taudoux/documents/Results/Parameters/pH/SITES/.[[BR]] |
| 35 | | |
| 36 | | . The script "script_calcul_pools.ksh" used in order to create files of soil_NH4+, Soil_NO3-, Soil_NOX and Soil_N2O for each site in function of time listed in : [[BR]] /home/users/taudoux/documents/Results/Pools/SOIL_NH4/SITES/ ; [[BR]] /home/users/taudoux/documents/Results/Pools/SOIL_NO3/SITES/ ; [[BR]] /home/users/taudoux/documents/Results/Pools/SOIL_NOX/SITES/ ; [[BR]] /home/users/taudoux/documents/Results/Pools/SOIL_N2O/SITES/ . [[BR]] |
| 37 | | |
| 38 | | . The Script "script_calcul_emission-deposition.ksh" used in order to create files of NH3 emission and NHX deposition for each site in function of time in : [[BR]] /home/users/taudoux/documents/Results/Emission-Deposition/NH3_EMISSION/Sites/ ; [[BR]] /home/users/taudoux/documents/Results/Emission-Deposition/NHX_DEPOSITION/Sites/.[[BR]] |
| 39 | | |
| 40 | | For each parameter are listed : |
| 41 | | |
| 42 | | . Figure of correlation with NH3 emissions (except pH) obtained using "script_calcul_r2.ksh" to obtain the R2 and then bar_plot.py in order to create the figure ; [[BR]] . Average emission of ammonia on each site in function of the parameter studied using "scatterplot.py" ; [[BR]] . Text documents in which are listed the different values. |
| 43 | | |
| 44 | | * Comparison with data used by LMDz-INCA model |
| | 33 | ==== Files ==== |
| | 34 | * The script "script_calcul_parameters.ksh" used in order to create files of Temperature, Humidity and pH of each site in function of time listed in : |
| | 35 | * /home/users/taudoux/documents/Results/Parameters/T2M/SITES/ |
| | 36 | * /home/users/taudoux/documents/Results/Parameters/LITTERHUM/SITES/ |
| | 37 | * /home/users/taudoux/documents/Results/Parameters/pH/SITES/ |
| | 38 | |
| | 39 | * The script "script_calcul_pools.ksh" used in order to create files of soil_NH4+, Soil_NO3-, Soil_NOX and Soil_N2O for each site in function of time listed in : |
| | 40 | * /home/users/taudoux/documents/Results/Pools/SOIL_NH4/SITES/ |
| | 41 | * /home/users/taudoux/documents/Results/Pools/SOIL_NO3/SITES/ |
| | 42 | * /home/users/taudoux/documents/Results/Pools/SOIL_NOX/SITES/ |
| | 43 | * /home/users/taudoux/documents/Results/Pools/SOIL_N2O/SITES/ |
| | 44 | |
| | 45 | * The Script "script_calcul_emission-deposition.ksh" used in order to create files of NH3 emission and NHX deposition for each site in function of time in : |
| | 46 | * /home/users/taudoux/documents/Results/Emission-Deposition/NH3_EMISSION/Sites/ |
| | 47 | * /home/users/taudoux/documents/Results/Emission-Deposition/NHX_DEPOSITION/Sites/ |
| | 48 | |
| | 49 | * For each parameter are listed : |
| | 50 | * Figure of correlation with NH3 emissions (except pH) obtained using "script_calcul_r2.ksh" to obtain the R2 and then bar_plot.py in order to create the figure |
| | 51 | * Average emission of ammonia on each site in function of the parameter studied using "scatterplot.py" |
| | 52 | * Text documents in which are listed the different values. |
| | 53 | |
| | 54 | === Comparison with data used by LMDz-INCA model === |
| 88 | | === Evaluation of ammonia emissions results calculated by the model (Fertilizer added) |
| 89 | | |
| 90 | | |
| 91 | | . Scripts used to generate the files.txt are in the folder : [[BR]] |
| 92 | | /home/users/taudoux/documents/Results/B/Script [[BR]] |
| 93 | | For the script : script_delta_X.ksh [[BR]] |
| 94 | | X depends on the simulation we are analyzing.[[BR]] |
| 95 | | arg1= Name of the site [[BR]] |
| 96 | | arg2= PFT [[BR]] |
| 97 | | arg3= Last Time Step [[BR]] |
| 98 | | |
| 99 | | Others scripts don't need arguments and generate files.txt according to their appellation : [[BR]] |
| 100 | | . 0.5 --> Simuls_ratio0.5_v1/ ; 0.8 --> Simuls_ratio0.8_v1/ [[BR]] |
| 101 | | . e --> EFe/ ; f --> EFf ; g --> EFg etc. |
| 102 | | |
| 103 | | .Scripts python used to generate graphics are in the folder : [[BR]] |
| 104 | | /home/users/taudoux/documents/Results/B/barplot_X.py [[BR]] |
| 105 | | |
| 106 | | X depends on the simulation we are analyzing.[[BR]] |
| 107 | | |
| 108 | | . files.txt are in the folders : [[BR]] |
| 109 | | /home/users/taudoux/documents/Results/B/Simuls_ratio0.5_v1/[[BR]] |
| 110 | | /home/users/taudoux/documents/Results/B/Simuls_ratio0.5_v2/ [[BR]] |
| 111 | | /home/users/taudoux/documents/Results/B/Simuls_ratio0.8_v1/ [[BR]] |
| 112 | | /home/users/taudoux/documents/Results/B/Simuls_ratio0.8_v2/ [[BR]] |
| 113 | | /home/users/taudoux/documents/Results/B/Simuls_ratio_init/ [[BR]] |
| 114 | | /home/users/taudoux/documents/Results/B/RundBis/ |
| 115 | | |
| 116 | | |
| 117 | | |
| 118 | | |
| 119 | | Code was changed : separation of nitrogen input. Initially fertilizer, bnf and atmospheric deposition were in the same loop. |
| | 98 | == III. Evaluation of ammonia emissions results calculated by the model (Fertilizer added) == |
| | 99 | |
| | 100 | === Where to find the files === |
| | 101 | |
| | 102 | * Scripts used to generate the files.txt are in the folder : |
| | 103 | * /home/users/taudoux/documents/Results/B/Script |
| | 104 | * For the script : script_delta_X.ksh ( X depends on the simulation we are analyzing ) |
| | 105 | * arg1= Name of the site |
| | 106 | * arg2= PFT |
| | 107 | * arg3= Last Time Step |
| | 108 | |
| | 109 | * Others scripts don't need arguments and generate files.txt according to their appellation : |
| | 110 | * 0.5 --> Simuls_ratio0.5_v1/ ; 0.8 --> Simuls_ratio0.8_v1/ |
| | 111 | * e --> EFe/ ; f --> EFf ; g --> EFg etc. |
| | 112 | |
| | 113 | * Scripts python used to generate graphics are in the folder : |
| | 114 | * /home/users/taudoux/documents/Results/B/barplot_X.py ( X depends on the simulation we are analyzing) |
| | 115 | |
| | 116 | * files.txt are in the folders : |
| | 117 | * /home/users/taudoux/documents/Results/B/Simuls_ratio0.5_v1/ |
| | 118 | * /home/users/taudoux/documents/Results/B/Simuls_ratio0.5_v2/ |
| | 119 | * /home/users/taudoux/documents/Results/B/Simuls_ratio0.8_v1/ |
| | 120 | * /home/users/taudoux/documents/Results/B/Simuls_ratio0.8_v2/ |
| | 121 | * /home/users/taudoux/documents/Results/B/Simuls_ratio_init/ |
| | 122 | * /home/users/taudoux/documents/Results/B/RundBis/ |
| | 123 | |
| | 124 | |
| | 125 | |
| | 126 | |
| | 127 | === Code was changed === |
| | 128 | '''Separation of nitrogen input. Initially fertilizer, bnf and atmospheric deposition were in the same loop ''' |
| 134 | | General path : path : /home/users/taudoux/documents/Results/B/Simul_ratio0.5_v1/ or /home/users/taudoux/documents/Results/B/Simul_ratio0.8_v1/ [[BR]] |
| 135 | | Temperature, Humidity in the folder Parameters/ [[BR]] |
| 136 | | |
| 137 | | Nitrogen Pools (Soil_NH4, Soil_NO3, Soil_NOX and Soil_N2O) and Leaching (NH4 and NO3) in the folder Pools_fluxes/ [[BR]] |
| 138 | | |
| 139 | | Emissions (NH3, N2, N2O, NOx) in the folder NH3_EM/ [[BR]] |
| 140 | | |
| 141 | | GPP in the folder GPP/ [[BR]] |
| 142 | | |
| 143 | | Nitrogen input summed (fertiliser, NHx and NOx depositions) in the folder DEP_FERT/ [[BR]] |
| | 145 | * Temperature |
| | 146 | * Humidity |
| | 147 | * Nitrogen Pools (Soil_NH4, Soil_NO3, Soil_NOX and Soil_N2O) and Leaching (NH4 and NO3) |
| | 148 | * Emissions (NH3, N2, N2O, NOx) |
| | 149 | * GPP |
| | 150 | * Nitrogen input summed (fertilizer, NHx and NOx depositions) |
| | 151 | |
| | 152 | Respectively in the folders Parameters (T° and Hum), Pools_fluxes, NH3_EM, DEP_FERT and GPP. |
| 172 | | . The first (A.) consisted to normalized the fluxes minus emissions when nfert=0 by the amount of fertiliser added ; [[BR]] |
| 173 | | . The second (B.) consisted to normalized the fluxes by the amount of fertiliser added ; [[BR]] |
| 174 | | . The third (C.) consisted to normalized the fluxes by the amount of all nitrogen inputs. [[BR]] |
| 175 | | . The third (C.) consisted to normalized the fluxes by all nitrogen inputs. |
| 176 | | |
| 177 | | A. EF of each parameters on each site for NH4%=0.5 and 0.8 [[BR]] |
| | 184 | * The first (A.) consisted to normalized the fluxes minus emissions when nfert=0 by the amount of fertilizer added ; [[BR]] |
| | 185 | * The second (B.) consisted to normalized the fluxes by the amount of fertilizer added |
| | 186 | * The third (C.) consisted to normalized the fluxes by the amount of all nitrogen inputs |
| | 187 | * The third (C.) consisted to normalized the fluxes by all nitrogen inputs. |
| | 188 | |
| | 189 | |
| | 190 | === A. EF of each parameters on each site for NH4%=0.5 and 0.8 === |
