# # ChangeLog for trunk # # Generated by Trac 1.0.1 # 2024-07-23T20:29:32+02:00 Tue, 24 Nov 2020 09:47:41 GMT sebastiaan.luyssaert [6942] Correctly initialize xios for variables that are written within an ... Mon, 16 Nov 2020 09:34:31 GMT sebastiaan.luyssaert [6936] Configuration for the transient simulation with the new driver. This ... Thu, 12 Nov 2020 13:02:10 GMT bertrand.guenet [6934] Adding soil and litter turnover variables Thu, 12 Nov 2020 12:25:30 GMT sebastiaan.luyssaert [6933] Externalized the parameters that link crown diameter to tree height. ... Wed, 11 Nov 2020 17:13:01 GMT sebastiaan.luyssaert [6932] Fixes ticket #733. The new albedo scheme calculates the surface albedo. ... Tue, 10 Nov 2020 13:16:36 GMT sebastiaan.luyssaert [6931] Fixes ticket #727. Tested for all four combinations of impose_cn and ... Fri, 06 Nov 2020 15:46:34 GMT matthew.mcgrath [6930] DEV: Bug fix, Irene complained about type mismatch Wed, 04 Nov 2020 12:59:56 GMT sebastiaan.luyssaert [6925] Fixes ticket #732 Tue, 03 Nov 2020 21:12:36 GMT sebastiaan.luyssaert [6924] Configuration to spinup the model with the new driver. Not fully working ... Tue, 03 Nov 2020 18:11:16 GMT sebastiaan.luyssaert [6923] Adjusted the parameters to enhance the consistency between tree height ... Tue, 03 Nov 2020 18:10:04 GMT sebastiaan.luyssaert [6922] Enhanced the consistency between tree height and crown diameter. This ... Tue, 03 Nov 2020 16:34:49 GMT sebastiaan.luyssaert [6921] Bug fix in the calculation of nep and nbp Sun, 01 Nov 2020 12:00:59 GMT sebastiaan.luyssaert [6918] Added fail safe option for phenology (ok_force_pheno) required a partial ... Fri, 30 Oct 2020 14:54:55 GMT sebastiaan.luyssaert [6917] Fixes ticket #718 Fri, 30 Oct 2020 12:21:30 GMT sebastiaan.luyssaert [6916] Changed soil parameters in line with r6862 Mon, 26 Oct 2020 17:48:56 GMT sebastiaan.luyssaert [6913] Maintenance respiration can now be calculated as a function of nitrogen ... Sun, 25 Oct 2020 12:09:00 GMT sebastiaan.luyssaert [6910] Added history variables to better monitor phenology and set Larch ... Sun, 25 Oct 2020 12:06:45 GMT sebastiaan.luyssaert [6909] Refined parameters for several canopy variables Fri, 23 Oct 2020 13:11:49 GMT sebastiaan.luyssaert [6908] Bug fix. Added fruit turnover for grasses. Contributes to ticket #725 Fri, 16 Oct 2020 12:17:38 GMT sebastiaan.luyssaert [6904] LAI_MEAN is now annual mean LAI and is the same as LAI in Tag2.1 Fri, 16 Oct 2020 12:16:43 GMT sebastiaan.luyssaert [6903] Initial guess for some parameter values following code revisions in ... Tue, 13 Oct 2020 15:13:19 GMT sebastiaan.luyssaert [6901] Harmonized the variable names used to describe the relative soil ... Mon, 12 Oct 2020 07:58:29 GMT sebastiaan.luyssaert [6900] Enhanced consistency of the calculation of the target nitrogen and ... Fri, 09 Oct 2020 11:54:09 GMT sebastiaan.luyssaert [6898] Fixes ticket #726 - double use of a single variable name Thu, 08 Oct 2020 14:48:20 GMT sebastiaan.luyssaert [6893] Bug fix in stomate_growth_fun_all.f90 and added variables mainly for ... Mon, 05 Oct 2020 07:39:31 GMT sebastiaan.luyssaert [6887] Resolved inconsistencies and duplications between longevity_leaf and ... Mon, 05 Oct 2020 07:38:38 GMT sebastiaan.luyssaert [6886] Resolved inconsistencies and duplications between longevity_leaf and ... Wed, 30 Sep 2020 21:26:59 GMT sebastiaan.luyssaert [6883] Added diagnostic output variables to xios to evaluate recruitment and ... Thu, 24 Sep 2020 13:27:17 GMT sebastiaan.luyssaert [6879] Setup for testing and evaluating Milestone 4.1. Settings were committed ... Thu, 24 Sep 2020 13:02:28 GMT sebastiaan.luyssaert [6878] Setup for testing and evaluating Milestone 4.1. Setting were committed ... Wed, 23 Sep 2020 14:44:23 GMT matthew.mcgrath [6877] Removing a confusing and redundant flag for recruitment Tue, 22 Sep 2020 13:57:50 GMT nicolas.vuichard [6876] update for ERA5 Tue, 22 Sep 2020 13:45:41 GMT nicolas.vuichard [6875] update fluxnet_data Thu, 17 Sep 2020 11:18:31 GMT matthew.mcgrath [6874] Typo fix from previous commit Thu, 17 Sep 2020 11:13:45 GMT matthew.mcgrath [6873] Getting better LAI behavior with PFT7, NeedleleafEvergreenBoreal Fri, 11 Sep 2020 13:37:20 GMT matthew.mcgrath [6871] Bug fix for ticket #722 Fri, 11 Sep 2020 09:31:15 GMT matthew.mcgrath [6870] It seems changeset 6868 was overwritten by 6869. Redoing. Fri, 11 Sep 2020 08:01:04 GMT sebastiaan.luyssaert [6869] DEV: tested on a 3x3 region. The N content of the reserve pool now ... Fri, 11 Sep 2020 07:34:04 GMT matthew.mcgrath [6868] Bug fix for ticket #719 on mass balance closure in FG1trans Fri, 24 Jul 2020 09:00:03 GMT anne.cozic [6854] Scripts created by Vladislav Bastrikov to generate CRUJRA forcing stored ... Tue, 07 Jul 2020 09:38:52 GMT sebastiaan.luyssaert [6831] Tuned parameters for MTC2 Mon, 06 Jul 2020 13:04:47 GMT sebastiaan.luyssaert [6829] Fixes the mass balance check in dim_product_use. Contributes to ticket ... Fri, 03 Jul 2020 13:36:06 GMT sebastiaan.luyssaert [6826] Tuned parameters for MTC4 Fri, 03 Jul 2020 11:50:35 GMT sebastiaan.luyssaert [6825] DEV: added N-mobility between the reserve and the labile pool. This ... Thu, 02 Jul 2020 15:34:46 GMT sebastiaan.luyssaert [6824] DEV: added the option to calculate the root density in hydraulic_arch ... Mon, 29 Jun 2020 09:16:10 GMT sebastiaan.luyssaert [6823] Change default for product use until ticket #702 can be closed. ... Mon, 29 Jun 2020 09:13:37 GMT sebastiaan.luyssaert [6822] Code changes fix problems with the fluxes from the product pools. ... Fri, 26 Jun 2020 19:45:20 GMT sebastiaan.luyssaert [6821] Development: sapwood mortality from hydraulic failure. Removed output ... Fri, 26 Jun 2020 15:04:52 GMT sebastiaan.luyssaert [6819] Development: sapwood mortality from hydraulic failure. The code can be ... Fri, 26 Jun 2020 09:19:37 GMT sebastiaan.luyssaert [6818] Fixes contributing to ticket #712 related to water buget closure. These ... Wed, 24 Jun 2020 16:02:48 GMT sebastiaan.luyssaert [6817] defined default value Wed, 24 Jun 2020 08:59:56 GMT sebastiaan.luyssaert [6816] Changes contribute to restoring water budget closure of the model. See ... Mon, 22 Jun 2020 05:08:53 GMT bertrand.guenet [6815] bug in the parallelization solved Sat, 13 Jun 2020 17:49:12 GMT sebastiaan.luyssaert [6813] Tuned parameters for MTC 2 Sat, 06 Jun 2020 13:16:40 GMT sebastiaan.luyssaert [6810] Additional output variables to evaluate stand dynamics Sat, 06 Jun 2020 13:16:10 GMT sebastiaan.luyssaert [6809] Bug correction for using FM maps during the spinup Fri, 05 Jun 2020 15:35:40 GMT sebastiaan.luyssaert [6808] Use FM maps in FG1 and FG1trans. These changes contribute to ticket #647 Fri, 05 Jun 2020 11:46:20 GMT sebastiaan.luyssaert [6807] Updated paths to DOFOCO maps, use FM maps in FG2. These changes ... Thu, 04 Jun 2020 09:42:13 GMT sebastiaan.luyssaert [6804] Contributes to #700. Fixes a bug introduced in r6727. Changes proposed ... Mon, 01 Jun 2020 15:27:03 GMT sebastiaan.luyssaert [6802] Bug corrections for changes made in r6799 Thu, 28 May 2020 20:00:53 GMT sebastiaan.luyssaert [6801] Added two fail safe option in stomate_turnover to ensure that deciduous ... Thu, 28 May 2020 19:16:19 GMT sebastiaan.luyssaert [6800] Parameter changes to make r6799 work. These changes contribute to ticket ... Thu, 28 May 2020 17:50:13 GMT sebastiaan.luyssaert [6799] Code changes in line with the issues described in ticket #666. The ... Tue, 19 May 2020 11:53:52 GMT sebastiaan.luyssaert [6798] Bug fix contributing to ticket #709 Thu, 14 May 2020 16:43:55 GMT sebastiaan.luyssaert [6797] Refined a few comments in the calculation of hydraulic acrhitecture Wed, 13 May 2020 13:41:47 GMT sebastiaan.luyssaert [6794] Implemented changeset 6782: plant N uptake is now a function of longterm ... Wed, 13 May 2020 13:35:18 GMT sebastiaan.luyssaert [6793] Commented out histwrites that were not accompanied by a histdef Tue, 12 May 2020 10:40:56 GMT sebastiaan.luyssaert [6788] Set som_turn_islow to the same value currently used in ORCHIDEE Tag 2.0 Mon, 11 May 2020 16:06:48 GMT sebastiaan.luyssaert [6787] Implemented changeset 6781: externalizing parameter defining the ... Fri, 08 May 2020 15:51:12 GMT sebastiaan.luyssaert [6785] linked ok_bare_soil_new to the different settings of energy_control to ... Fri, 08 May 2020 09:23:25 GMT sebastiaan.luyssaert [6783] The default for do_rsoil has been changed to TRUE because it was found ... Fri, 01 May 2020 07:12:07 GMT matthew.mcgrath [6766] Jina's fix for evaporation being much higher than transpiration: tickets ... Thu, 30 Apr 2020 13:47:48 GMT sebastiaan.luyssaert [6765] Changed MTC parameters to obtain acceptable GPP and LAI values. Values ... Thu, 30 Apr 2020 07:04:46 GMT matthew.mcgrath [6762] Printing out more information in a crash on heterotrophic respiration Sat, 25 Apr 2020 15:21:41 GMT sebastiaan.luyssaert [6757] Simplified parameterization: for grasses and cropland height_init_min ... Wed, 22 Apr 2020 07:06:08 GMT sebastiaan.luyssaert [6743] Renamed tau_leaf, tau_sap and tau_root as longevity_leaf, longevity_sap ... Wed, 22 Apr 2020 06:59:26 GMT sebastiaan.luyssaert [6742] Renamed tau_leaf, tau_sap and tau_root as longevity_leaf, longevity_sap ... Tue, 21 Apr 2020 12:17:28 GMT sebastiaan.luyssaert [6741] removed the parameter leaflife_tab. Leaflife_tab (for the dgvm) and ... Tue, 21 Apr 2020 12:13:33 GMT sebastiaan.luyssaert [6740] Split LAI into LAI_MEAN and LAI_MAX in the stomate history files. No ... Sun, 19 Apr 2020 17:23:39 GMT sebastiaan.luyssaert [6739] Accounting for the absence of leaves when writing LEAF_AGE, VCMAX and ... Fri, 17 Apr 2020 08:27:57 GMT sebastiaan.luyssaert [6738] Edited the documentation of the script Thu, 16 Apr 2020 14:09:42 GMT sebastiaan.luyssaert [6736] Added the author name to the script Thu, 16 Apr 2020 14:06:45 GMT sebastiaan.luyssaert [6735] First version of a script to extract restarts with a limited spatial ... Tue, 14 Apr 2020 08:00:29 GMT bertrand.guenet [6732] bug correction related to the writing of stomate_Cforcing Sat, 11 Apr 2020 16:49:57 GMT sebastiaan.luyssaert [6730] Fixes a problem with grassland and cropland senescence. See ticket #704 Fri, 10 Apr 2020 13:03:54 GMT sebastiaan.luyssaert [6728] Revision r6723 contained the wrong revision number resulting in poor ... Fri, 10 Apr 2020 11:49:52 GMT sebastiaan.luyssaert [6727] Resolves ticket #700 by only using daytime values when the average ... Fri, 10 Apr 2020 11:24:03 GMT sebastiaan.luyssaert [6726] Corrects an oversight in r6720 where the code tried to send an ... Fri, 10 Apr 2020 09:35:51 GMT sebastiaan.luyssaert [6724] Added documentation concerning IOS in the config.card Fri, 10 Apr 2020 09:28:52 GMT sebastiaan.luyssaert [6723] Defines a harvest ratio for grasses following the externalization of ... Thu, 09 Apr 2020 14:59:32 GMT sebastiaan.luyssaert [6721] Prevent the recalculation of gpp to happen when the canopy is very small ... Thu, 09 Apr 2020 14:30:45 GMT sebastiaan.luyssaert [6720] Added two diagnostic output variables to better track the calculation of ... Wed, 08 Apr 2020 13:25:48 GMT sebastiaan.luyssaert [6718] Changes close the mass balance for CO2 in ... Mon, 06 Apr 2020 11:44:42 GMT josefine.ghattas [6708] Changed to source init/bash which is more coherent with bash script. But ... Fri, 03 Apr 2020 10:33:11 GMT josefine.ghattas [6707] Remved module list before source of arch.env file because this command ... Thu, 02 Apr 2020 07:55:50 GMT josefine.ghattas [6700] All variables passed by arguments must be alloacated even if they are ... Thu, 02 Apr 2020 07:24:28 GMT sebastiaan.luyssaert [6699] Changes to read the new global forest management as well as the previous ... Wed, 01 Apr 2020 14:21:19 GMT sebastiaan.luyssaert [6698] First version of the scripts used to make global forest management maps ... Wed, 01 Apr 2020 12:40:11 GMT josefine.ghattas [6697] Use a intermediate variable to avoid problem in debug mode at Jean- Zay, ... Wed, 01 Apr 2020 10:54:37 GMT josefine.ghattas [6696] Correction: the internal parantesis (flux_s(:,:,icarbon,:) + ...