# # ChangeLog for trunk/ORCHIDEE/src_stomate # # Generated by Trac 1.0.1 # 2024-07-31T00:11:38+02:00 Tue, 23 Nov 2021 18:30:13 GMT sebastiaan.luyssaert [7361] Made vmax_uptake_nh4 and vmax_uptake_no3 PFT-dependent. Made ... Tue, 23 Nov 2021 18:27:46 GMT sebastiaan.luyssaert [7360] Refined the debugging statements to limit the output when debugging ... Wed, 17 Nov 2021 16:15:25 GMT josefine.ghattas [7347] - Remove tau_soilhum_month, soilhum_month and soilhum_daily never used ... Mon, 15 Nov 2021 07:13:13 GMT josefine.ghattas [7345] Reintegrated changeset 7290 which is needed for running in debug mode at ... Fri, 12 Nov 2021 11:53:37 GMT josefine.ghattas [7342] Temporary comenting lines. This section of the code is not correct. It ... Thu, 28 Oct 2021 10:38:54 GMT sebastiaan.luyssaert [7334] Contributes to ticket #796 by fixing a restart problem with pests. ... Tue, 12 Oct 2021 15:18:03 GMT sebastiaan.luyssaert [7317] Bug fixes for product pools. Contributes to ticket #774. Changes ... Wed, 06 Oct 2021 13:52:32 GMT josefine.ghattas [7309] Corrections to run with IOIPSL output: - TOTAL_LITTER_SOIL_CARBON was ... Mon, 04 Oct 2021 18:34:17 GMT sebastiaan.luyssaert [7305] Code cleaning. Contributes to ticket #633. Changes proposed by Guillaume Fri, 01 Oct 2021 15:44:35 GMT sebastiaan.luyssaert [7304] Correction of crown diameters and crown volume. Avoids the situatiuon ... Thu, 30 Sep 2021 07:12:15 GMT sebastiaan.luyssaert [7302] use local solar zenith angles to calculate Pgap. Contributes to ticket ... Mon, 27 Sep 2021 11:20:01 GMT sebastiaan.luyssaert [7300] Improve sequence for pests in stomate. Proposed by Guillaume. Thu, 23 Sep 2021 14:05:00 GMT josefine.ghattas [7294] Removed local declaration of risk_index. This is a module variable and ... Mon, 20 Sep 2021 08:52:33 GMT josefine.ghattas [7293] Corrected small errors seen by the compiler but not making any problems ... Fri, 17 Sep 2021 11:21:48 GMT josefine.ghattas [7290] Avoid shap missmatch errors when compiling in debug mode. See ticket ... Fri, 17 Sep 2021 08:44:33 GMT josefine.ghattas [7289] Corrected errors in OMP THREADPRIVATE statements. The code could not ... Thu, 09 Sep 2021 11:14:27 GMT sebastiaan.luyssaert [7279] Contributes to #633 and #651. Code changes by Guillaume Tue, 24 Aug 2021 13:24:57 GMT sebastiaan.luyssaert [7273] Contributes to tickets #633 and #653. Adding a period for unmanaged ... Thu, 19 Aug 2021 09:15:18 GMT sebastiaan.luyssaert [7272] corrects typo present in second last commit Tue, 17 Aug 2021 11:15:38 GMT sebastiaan.luyssaert [7269] No longer using the N-bypass through the fungivores. Returned to a fixed ... Thu, 15 Jul 2021 22:08:13 GMT sebastiaan.luyssaert [7250] set veget for bare soil to zero. Following r6994 Fri, 09 Jul 2021 14:22:42 GMT matthew.mcgrath [7247] A couple small technical bug fixes Thu, 08 Jul 2021 12:46:03 GMT sebastiaan.luyssaert [7246] Making KF a function of tree height. Changing Ra parameters, re- ... Mon, 05 Jul 2021 10:46:33 GMT matthew.mcgrath [7244] Making explicit the values of Pgap in different arrays Sat, 03 Jul 2021 05:14:47 GMT sebastiaan.luyssaert [7243] Correction of previous commit: making KF a function of height Fri, 02 Jul 2021 21:42:47 GMT sebastiaan.luyssaert [7242] Making KF a function of tree height/ Mainly cleaning the code ... Fri, 02 Jul 2021 09:18:44 GMT sebastiaan.luyssaert [7241] Contribute to ticket #663. Refining the bark beetle dynamics and damage Wed, 16 Jun 2021 07:15:50 GMT sebastiaan.luyssaert [7219] Changes to insect outbreaks proposed by Guillaume. Changes to vcmax ... Wed, 02 Jun 2021 11:57:28 GMT sebastiaan.luyssaert [7208] Enhancing the soil carbon pools by applying the same parameter changes ... Fri, 28 May 2021 16:07:08 GMT sebastiaan.luyssaert [7202] introducing different driver for the endimic and pandemic phases of ... Mon, 24 May 2021 16:00:17 GMT sebastiaan.luyssaert [7197] Revisions of the windthrow code. Changes proposed by Jina Jeong. Thu, 20 May 2021 14:52:02 GMT sebastiaan.luyssaert [7194] Fixes ticket 777 Mon, 10 May 2021 15:24:20 GMT sebastiaan.luyssaert [7187] Fixes ticket 776 Thu, 06 May 2021 21:09:10 GMT sebastiaan.luyssaert [7180] Fixes ticket #768 Thu, 06 May 2021 17:37:44 GMT matthew.mcgrath [7179] Small write statement related to bug #776 Wed, 28 Apr 2021 15:20:32 GMT sebastiaan.luyssaert [7168] fixes ticket #775 Wed, 28 Apr 2021 13:59:06 GMT sebastiaan.luyssaert [7167] Fixes the mass balance problem reported in ticket #773 Mon, 26 Apr 2021 08:25:08 GMT sebastiaan.luyssaert [7161] Contributes to ticket #759. Fixes a crash that occurred in debug mode on ... Wed, 07 Apr 2021 18:52:57 GMT sebastiaan.luyssaert [7149] Consistent root profiles throughout the code. Contributes to ticket #715 Wed, 07 Apr 2021 08:27:35 GMT sebastiaan.luyssaert [7147] Changes contribute to ticket 633. Changes proposed by Jina Jeong. Fri, 02 Apr 2021 19:00:21 GMT sebastiaan.luyssaert [7143] Added clearcutting during spinup to break synchronicity. Contributes to ... Fri, 02 Apr 2021 14:24:02 GMT sebastiaan.luyssaert [7142] Contributes to #651. Change proposed by Jina Jeong. Fri, 02 Apr 2021 12:59:41 GMT sebastiaan.luyssaert [7141] Contributes to #651 and fixes some issues with delta13C. Changes ... Fri, 19 Mar 2021 11:47:35 GMT bertrand.guenet [7133] A new output variables added Wed, 17 Mar 2021 19:28:15 GMT sebastiaan.luyssaert [7130] Added a variable to better evaluate the effects of recruitment Fri, 12 Mar 2021 11:06:17 GMT sebastiaan.luyssaert [7124] Bug corrcetion for the calculation of labile_target. Contributes to #698 Thu, 11 Mar 2021 18:45:56 GMT sebastiaan.luyssaert [7120] Contrinutes to ticket #765 Sat, 06 Mar 2021 17:00:50 GMT sebastiaan.luyssaert [7113] Fixes ticket #763 Wed, 03 Mar 2021 08:17:46 GMT sebastiaan.luyssaert [7106] Unit corrections for NBP and its cross checks and refinements for ... Mon, 22 Feb 2021 10:47:25 GMT sebastiaan.luyssaert [7103] Changes contributing to ticket #759 Tue, 16 Feb 2021 16:38:24 GMT sebastiaan.luyssaert [7088] Changes contributing gto ticket #728 proposed by Chao Yue Tue, 16 Feb 2021 14:38:37 GMT matthew.mcgrath [7083] Adding an option to use dominant vegetation height in calculating ... Fri, 05 Feb 2021 07:42:51 GMT sebastiaan.luyssaert [7058] fixes consistency cross-check for nbp for vertical soil discretization. ... Thu, 04 Feb 2021 19:27:53 GMT sebastiaan.luyssaert [7057] fixes ticket #756 and contributes to ticket #759 Thu, 04 Feb 2021 15:57:39 GMT matthew.mcgrath [7055] Fixing the soil carbon output variable, and changing the default output ... Mon, 01 Feb 2021 08:45:36 GMT sebastiaan.luyssaert [7033] Externalized the ratio of Rm/GP and added bm_alloc for labile and ... Fri, 22 Jan 2021 12:00:26 GMT sebastiaan.luyssaert [7015] revert some changes that should not have been committed Thu, 21 Jan 2021 15:40:03 GMT sebastiaan.luyssaert [7012] Use ratio between Rm/GPP to trigger senescence for grasslands Thu, 21 Jan 2021 11:33:39 GMT sebastiaan.luyssaert [7011] Final changes for #744 (stomate.f90 and stomate_io.f90) and some ... Wed, 20 Jan 2021 21:16:41 GMT sebastiaan.luyssaert [7010] contributes to #744 Wed, 20 Jan 2021 16:22:38 GMT sebastiaan.luyssaert [7009] Contributes to #744. Restores the capability to run the nbp cross- ... Wed, 20 Jan 2021 13:07:43 GMT sebastiaan.luyssaert [7006] contributes to ticket #744 Wed, 20 Jan 2021 12:20:22 GMT sebastiaan.luyssaert [7004] Fixes ticket #739 and contributes to #749 Thu, 14 Jan 2021 15:04:54 GMT sebastiaan.luyssaert [6999] Contributing to #744. Made the two consistency checks for nbp more ... Thu, 14 Jan 2021 09:59:37 GMT sebastiaan.luyssaert [6998] Contributes to ticket #744 Tue, 12 Jan 2021 19:07:14 GMT matthew.mcgrath [6995] A couple small uninitialized variable bugfixes Thu, 07 Jan 2021 13:10:47 GMT sebastiaan.luyssaert [6988] Contributes to ticket #744 but does not finalizes it yet. Also fixes two ... Wed, 30 Dec 2020 16:09:17 GMT matthew.mcgrath [6985] Bug fix: unitialized variables in stomate, ticket 752 Tue, 29 Dec 2020 16:56:45 GMT sebastiaan.luyssaert [6984] Restores restartability of the model. Fixes ticket #750 Tue, 29 Dec 2020 09:20:50 GMT sebastiaan.luyssaert [6982] Contributes to ticket #744. Consistency cross-checking for analytical ... Mon, 28 Dec 2020 11:30:55 GMT sebastiaan.luyssaert [6981] Integrated ipresenescence in plant_status. Changes proposed by Guillaume ... Tue, 22 Dec 2020 13:12:36 GMT sebastiaan.luyssaert [6977] Added consistency cross checking for NBP. Added dimensions to prod, flux ... Fri, 11 Dec 2020 08:01:54 GMT sebastiaan.luyssaert [6963] Making maintanance respiration a function of labile rather than the ... Thu, 10 Dec 2020 19:31:32 GMT sebastiaan.luyssaert [6961] Small fixes of the calculation of maintanance respiration Fri, 27 Nov 2020 13:55:07 GMT sebastiaan.luyssaert [6947] Introduced a pre-senescence phase and made senescene dependent on the ... Thu, 26 Nov 2020 08:02:30 GMT sebastiaan.luyssaert [6945] Bug fix for the phenology of PFT3 contributes to ticket #714 Tue, 24 Nov 2020 09:47:41 GMT sebastiaan.luyssaert [6942] Correctly initialize xios for variables that are written within an ... Tue, 10 Nov 2020 13:16:36 GMT sebastiaan.luyssaert [6931] Fixes ticket #727. Tested for all four combinations of impose_cn and ... Wed, 04 Nov 2020 12:59:56 GMT sebastiaan.luyssaert [6925] Fixes ticket #732 Tue, 03 Nov 2020 16:34:49 GMT sebastiaan.luyssaert [6921] Bug fix in the calculation of nep and nbp Sun, 01 Nov 2020 12:00:59 GMT sebastiaan.luyssaert [6918] Added fail safe option for phenology (ok_force_pheno) required a partial ... Mon, 26 Oct 2020 17:48:56 GMT sebastiaan.luyssaert [6913] Maintenance respiration can now be calculated as a function of nitrogen ... Sun, 25 Oct 2020 12:09:00 GMT sebastiaan.luyssaert [6910] Added history variables to better monitor phenology and set Larch ... Fri, 23 Oct 2020 13:11:49 GMT sebastiaan.luyssaert [6908] Bug fix. Added fruit turnover for grasses. Contributes to ticket #725 Fri, 16 Oct 2020 12:17:38 GMT sebastiaan.luyssaert [6904] LAI_MEAN is now annual mean LAI and is the same as LAI in Tag2.1 Tue, 13 Oct 2020 15:13:19 GMT sebastiaan.luyssaert [6901] Harmonized the variable names used to describe the relative soil ... Mon, 12 Oct 2020 07:58:29 GMT sebastiaan.luyssaert [6900] Enhanced consistency of the calculation of the target nitrogen and ... Fri, 09 Oct 2020 11:54:09 GMT sebastiaan.luyssaert [6898] Fixes ticket #726 - double use of a single variable name Thu, 08 Oct 2020 14:48:20 GMT sebastiaan.luyssaert [6893] Bug fix in stomate_growth_fun_all.f90 and added variables mainly for ... Mon, 05 Oct 2020 07:38:38 GMT sebastiaan.luyssaert [6886] Resolved inconsistencies and duplications between longevity_leaf and ... Wed, 30 Sep 2020 21:26:59 GMT sebastiaan.luyssaert [6883] Added diagnostic output variables to xios to evaluate recruitment and ... Wed, 23 Sep 2020 14:44:23 GMT matthew.mcgrath [6877] Removing a confusing and redundant flag for recruitment Fri, 11 Sep 2020 13:37:20 GMT matthew.mcgrath [6871] Bug fix for ticket #722 Fri, 11 Sep 2020 09:31:15 GMT matthew.mcgrath [6870] It seems changeset 6868 was overwritten by 6869. Redoing. Fri, 11 Sep 2020 08:01:04 GMT sebastiaan.luyssaert [6869] DEV: tested on a 3x3 region. The N content of the reserve pool now ... Fri, 11 Sep 2020 07:34:04 GMT matthew.mcgrath [6868] Bug fix for ticket #719 on mass balance closure in FG1trans Mon, 06 Jul 2020 13:04:47 GMT sebastiaan.luyssaert [6829] Fixes the mass balance check in dim_product_use. Contributes to ticket ... Fri, 03 Jul 2020 11:50:35 GMT sebastiaan.luyssaert [6825] DEV: added N-mobility between the reserve and the labile pool. This ... Mon, 29 Jun 2020 09:13:37 GMT sebastiaan.luyssaert [6822] Code changes fix problems with the fluxes from the product pools. ... Fri, 26 Jun 2020 19:45:20 GMT sebastiaan.luyssaert [6821] Development: sapwood mortality from hydraulic failure. Removed output ...