[6] | 1 | #!/bin/ksh |
---|
| 2 | |
---|
| 3 | ######################################################################## |
---|
| 4 | |
---|
| 5 | #D- Flag to determine if this job in a standalone mode |
---|
| 6 | #D- Default : value from AA_job if any |
---|
| 7 | StandAlone=${StandAlone:=true} |
---|
| 8 | |
---|
| 9 | #D- Increased verbosity (1, 2, 3) |
---|
| 10 | #D- Default : value from AA_job if any |
---|
| 11 | Verbosity=${Verbosity:=3} |
---|
| 12 | |
---|
| 13 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 14 | #D- Default : value from AA_job if any |
---|
| 15 | DEBUG_debug=${DEBUG_debug:=false} |
---|
| 16 | |
---|
| 17 | #RUN_DIR_PATH=${RUN_DIR_PATH:=/tmp/tmp$$} |
---|
| 18 | |
---|
| 19 | ######################################################################## |
---|
| 20 | |
---|
| 21 | MODIPSL=$1 |
---|
| 22 | libIGCM=${libIGCM:=${MODIPSL}/libIGCM} |
---|
| 23 | |
---|
| 24 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 25 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 26 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 27 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
| 28 | |
---|
| 29 | ######################################################################## |
---|
| 30 | #set -vx |
---|
| 31 | ######################################################################## |
---|
| 32 | # Script input parameters |
---|
| 33 | |
---|
| 34 | # Site name |
---|
| 35 | SiteArg=$2 |
---|
| 36 | Site=${SiteArg:=Gu} |
---|
| 37 | # Time in years in file for this site : |
---|
| 38 | DureeArg=$3 |
---|
| 39 | export DUREE=${DureeArg:=1} |
---|
| 40 | |
---|
| 41 | # First year in file for this site : |
---|
| 42 | FirstArg=$4 |
---|
| 43 | export FYEAR=${FirstArg:=1} |
---|
| 44 | |
---|
| 45 | |
---|
| 46 | # Atlas Name : |
---|
| 47 | AtlasCfgArg=$5 |
---|
| 48 | AtlasCfg=${AtlasCfgArg:=atlas_FLUXNET.cfg} |
---|
| 49 | |
---|
| 50 | # observation_file |
---|
| 51 | observation_file_pathArg=$6 |
---|
| 52 | observation_file_path=${observation_file_pathArg:='${R_IN}/BC/OOL/${config_UserChoices_TagName}/FLUXNET/OLD/${Site}.nc'} |
---|
| 53 | #/home/mancip/IGCM/BC/OOL/OL2/FLUXNET/OBS/${Site}_obs_gapfilled.nc |
---|
| 54 | |
---|
| 55 | # old history file |
---|
| 56 | reference_file_pathArg=$7 |
---|
| 57 | reference_file_path=${reference_file_pathArg:='/home/mancip/PROG/IPSL/VALID_OL/SECHIBA/${Site}_sechiba_hist.nc'} |
---|
| 58 | |
---|
| 59 | # Modulo for SpinUp years |
---|
| 60 | ModuloArg=$8 |
---|
| 61 | |
---|
| 62 | #if [ ${DEBUG_debug} = true ] ; then |
---|
| 63 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
| 64 | echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." |
---|
| 65 | #fi |
---|
| 66 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 67 | |
---|
| 68 | if [ ${StandAlone} = true ] ; then |
---|
| 69 | CARD_DIR=${SUBMIT_DIR} |
---|
| 70 | else |
---|
| 71 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
---|
| 72 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
---|
| 73 | fi |
---|
| 74 | |
---|
| 75 | # |
---|
| 76 | # First of all |
---|
| 77 | # |
---|
| 78 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
---|
| 79 | typeset option |
---|
| 80 | for option in ${config_UserChoices[*]} ; do |
---|
| 81 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
---|
| 82 | done |
---|
| 83 | # |
---|
| 84 | echo |
---|
| 85 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
---|
| 86 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
---|
| 87 | if [ 3 -le ${Verbosity} ] ; then |
---|
| 88 | echo "--------------Debug3-->" "config_UserChoices_LongName=" |
---|
| 89 | echo "--------------Debug3-->" \"${config_UserChoices_LongName}\" |
---|
| 90 | fi |
---|
| 91 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
---|
| 92 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
---|
| 93 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
---|
| 94 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
---|
| 95 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
---|
| 96 | echo |
---|
| 97 | |
---|
| 98 | |
---|
| 99 | # FLAG = SECHIBA, OK_STOMATE |
---|
| 100 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/fluxnet.card UserChoices ok_stomate |
---|
| 101 | if [ X${fluxnet_UserChoices_ok_stomate} = Xn ] ; then |
---|
| 102 | export FLAG=SECHIBA |
---|
| 103 | else |
---|
| 104 | export FLAG=OK_STOMATE |
---|
| 105 | fi |
---|
| 106 | |
---|
| 107 | #================================== |
---|
| 108 | |
---|
| 109 | SpinUpJob=${Site}${config_UserChoices_JobName} |
---|
| 110 | |
---|
| 111 | R_BC=${R_IN}/BC |
---|
| 112 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${SpinUpJob}/SPIN |
---|
| 113 | |
---|
| 114 | # look at files |
---|
| 115 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/fluxnet.card UserChoices DEBUG_SPIN |
---|
| 116 | if [ X${fluxnet_UserChoices_DEBUG_SPIN} = Xn ] ; then |
---|
| 117 | set -A liste_fichiers_with_path -- $( \ls -rt ${R_SAVE}/Output/${SpinUpJob}*/SRF/Output/MO/*_sechiba_history.nc ${R_OUT}/${config_UserChoices_TagName}/${SpinUpJob}HIST/SRF/Output/MO/*_sechiba_history.nc ) |
---|
| 118 | else |
---|
| 119 | set -A liste_fichiers_with_path -- $( \ls -rt ${R_OUT}/${config_UserChoices_TagName}/${SpinUpJob}*/SRF/Output/MO/*_sechiba_history.nc ) |
---|
| 120 | fi |
---|
| 121 | |
---|
| 122 | ii=0 |
---|
| 123 | for file in ${liste_fichiers_with_path[@]} ; do |
---|
| 124 | liste_fichiers[$ii]=$( echo ${file} | xargs basename ) |
---|
| 125 | (( ii = ii + 1 )) |
---|
| 126 | done |
---|
| 127 | echo ${liste_fichiers[*]} |
---|
| 128 | |
---|
| 129 | # Get and sed atlas |
---|
| 130 | IGCM_sys_Cp ${CARD_DIR}/${AtlasCfg} ./atlas.cfg |
---|
| 131 | |
---|
| 132 | # Set default Modulo parameter to the last file |
---|
| 133 | eval NbFiles=${#liste_fichiers[@]} |
---|
| 134 | echo "NbFiles=" $NbFiles |
---|
| 135 | Modulo=${ModuloArg:=$(( NbFiles - 1 ))} |
---|
| 136 | |
---|
| 137 | # Get last time_axis patch |
---|
| 138 | Last_Patch_File=$( ls -t ${libIGCM}/libIGCM_post/IGCM_Patch_*_histcom_time_axis.ksh | tail -1 ) |
---|
| 139 | #echo "source patch file : ${Last_Patch_File}" |
---|
| 140 | # . ${Last_Patch_File} |
---|
| 141 | # Last_Patch=$( echo ${Last_Patch_File} | sed -e "s&${libIGCM}/libIGCM_post/\(.*\)\.ksh&\1&" ) |
---|
| 142 | #echo "We will apply the patch on all sechiba files : " ${Last_Patch} |
---|
| 143 | |
---|
| 144 | # Apply atlas |
---|
| 145 | ii=0 |
---|
| 146 | for file in ${liste_fichiers[*]} ; do |
---|
| 147 | |
---|
| 148 | DirFile=$( dirname ${liste_fichiers_with_path[$ii]} ) |
---|
| 149 | echo ${DirFile} |
---|
| 150 | |
---|
| 151 | # First apply the last time_axis patch |
---|
| 152 | # IGCM_sys_Cd ${DirFile} |
---|
| 153 | # ${Last_Patch} ${file} |
---|
| 154 | # # clean dir |
---|
| 155 | # rm out_rsync |
---|
| 156 | # # Then return to RUN_DIR_PATH |
---|
| 157 | # IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 158 | |
---|
| 159 | if [ $ii -eq 0 ] ; then |
---|
| 160 | file_=${file} |
---|
| 161 | # copy files we need for ATLAS |
---|
| 162 | IGCM_sys_Cp -p ${liste_fichiers_with_path[$ii]} . |
---|
| 163 | fi |
---|
| 164 | echo "!!!!!!!!!!!!!!!!!" |
---|
| 165 | echo ${file} |
---|
| 166 | export F_FILE=${Site} |
---|
| 167 | echo $ii "Modulo : " $( expr $ii \% $Modulo ) |
---|
| 168 | if [ $ii -gt 0 ] && [ X$( expr $ii \% $Modulo ) = X0 ] ; then |
---|
| 169 | |
---|
| 170 | # copy files we need for ATLAS |
---|
| 171 | IGCM_sys_Cp -Rp ${liste_fichiers_with_path[$ii]} . |
---|
| 172 | |
---|
| 173 | reference_file=${file_} |
---|
| 174 | eval observation_file=${observation_file_path} |
---|
| 175 | echo "ATLAS DIFF for files : " ${file} ${reference_file} ${observation_file} |
---|
| 176 | |
---|
| 177 | #cat atlas.cfg |
---|
| 178 | sed -e "s,RRRRRRR,${reference_file},g" -e "s,VVVVVVV,${observation_file},g" atlas.cfg > atlas_.cfg |
---|
| 179 | #cat atlas_.cfg |
---|
| 180 | AtlasPath=$( echo ${file} | sed -e 's/_1M_sechiba_history.nc//' ) |
---|
| 181 | atlas -o ATLAS_DIFF_${AtlasPath} atlas_.cfg ${file} |
---|
| 182 | |
---|
| 183 | # Save files |
---|
| 184 | IGCM_sys_Put_Dir ATLAS_DIFF_${AtlasPath} ${R_SAVE} |
---|
| 185 | # IGCM_sys_Rm -Rf ATLAS_DIFF_${AtlasPath} |
---|
| 186 | echo "&&&&&&&&&&&&&&&&!" |
---|
| 187 | |
---|
| 188 | file_=${file} |
---|
| 189 | fi |
---|
| 190 | (( ii=ii+1 )) |
---|
| 191 | done |
---|
| 192 | eval reference_file=${reference_file_path} |
---|
| 193 | sed -e "s,RRRRRRR,${reference_file},g" -e "s,VVVVVVV,${observation_file},g" atlas.cfg > atlas_.cfg |
---|
| 194 | |
---|
| 195 | echo "REFERENCE ATLAS for file : " ${file} ${reference_file} ${observation_file} |
---|
| 196 | atlas -o ATLAS_FIN_${AtlasPath}_ref atlas_.cfg ${file} |
---|
| 197 | |
---|
| 198 | # Save files |
---|
| 199 | IGCM_sys_Put_Dir ATLAS_FIN_${AtlasPath}_ref ${R_SAVE} |
---|
| 200 | |
---|
| 201 | IGCM_sys_Rm -Rf ATLAS_FIN_${AtlasPath}_ref |
---|
| 202 | |
---|
| 203 | |
---|
| 204 | |
---|
| 205 | # # Get and Apply Patch |
---|
| 206 | # . ${MODIPSL}/libIGCM/libIGCM_post/IGCM_Patch_20070220_histcom_time_axis.ksh |
---|
| 207 | # for file in ${liste_fichiers[*]} ; do |
---|
| 208 | # IGCM_Patch_20070220_histcom_time_axis ${file} |
---|
| 209 | # done |
---|
| 210 | |
---|
| 211 | # # look at files |
---|
| 212 | # echo "after Patch" IGCM_Patch_20070220_histcom_time_axis |
---|
| 213 | # \ls -lrt *_sechiba_history.nc |
---|
| 214 | |
---|
| 215 | # Concat files |
---|
| 216 | #IGCM_sys_ncrcat -o ${SpinUpJob}_1M_sechiba_history.nc ${liste_fichiers[*]} |
---|
| 217 | |
---|
| 218 | IGCM_sys_Rm -Rf ${liste_fichiers[*]} |
---|
| 219 | |
---|
| 220 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|