source: tags/ORCHIDEE_1_9_5/ORCHIDEE_OL/Utilitaire/AA_atlas @ 8

#-Q- sxnec ##################
#-Q- sxnec ## RHODES   IDRIS##
#-Q- sxnec ##################
#-Q- sxnec #QSUB -r ATLAS
#-Q- sxnec #QSUB -eo
#-Q- sxnec #QSUB -l mpp_p=2
#-Q- sxnec #QSUB -s /bin/ksh
#-Q- fjvpp ##################
#-Q- fjvpp ## IXIA         ##
#-Q- fjvpp ##################
#-Q- fjvpp #QSUB -r ATLAS
#-Q- fjvpp #QSUB -eo
#-Q- fjvpp #QSUB -n 1
#-Q- fjvpp #QSUB -s /bin/ksh
#-Q- sx6nec ##################
#-Q- sx6nec ## SX6NEC   CEA ##
#-Q- sx6nec ##################
#-Q- sx6nec #PBS -N ATLAS        # nom de la requete
#-Q- sx6nec #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx6nec #PBS -o sortie_ATLAS.1     # nom du fichier de sortie
#-Q- sx6nec #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx6nec #PBS -l memsz_job=3gb        # Limite memoire a 3 Go
#-Q- sx6nec #PBS -l cputim_job=1:00:00   # Limite temps a 1 heures
#-Q- sx6nec #PBS -q scalaire

# --------------------------------------------
set -x

# --------------------------------------------
#-Q- sxnec . /home/rech/psl/rpsl655/.atlas_env_rhodes_ksh
#-Q- sx6nec . /home/p86broc/.atlas_env_mercure_ksh 
#-Q- fjvpp . /home/p86broc/.atlas_env_ixia_ksh
#---------------------------------------------
date_start=`date`

# --------------------------------------------
cd $TMPDIR

# --------------------------------------------
export DISPLAY=:1
# --------------------------------------------
# Insert your commands between III...III lines and 
# precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
#-Q- sxnec R_FIC=${HOMEGAYA}
#-Q- sx6nec R_FIC=${DMFDIR}
#-Q- fjvpp R_FIC=${DMFDIR}
#-Q- sxnec observation_file=/u/rech/ces/rces803/FORCAGE_OL/${F_FILE}.nc
#-Q- sx6nec observation_file=/dmnfs/p86bensh/FORCAGE_OL/${F_FILE}.nc
#-Q- fjvpp observation_file=/dmnfs/p86bensh/FORCAGE_OL/${F_FILE}.nc
reference_file=http://dods.ipsl.jussieu.fr/cgi-bin/nph-dods/orchidee/VALID_OL/${FLAG}/${F_FILE}_sechiba_hist.nc
#-Q- sxnec reference_file=/u/rech/ces/rces803/VALID_OL/${FLAG}/${F_FILE}_sechiba_hist.nc
#-Q- sx6nec reference_file=/dmnfs/p86bensh/VALID_OL/${FLAG}/${F_FILE}_sechiba_hist.nc
#-Q- fjvpp reference_file=/dmnfs/p86bensh/VALID_OL/${FLAG}/${F_FILE}_sechiba_hist.nc

export F_FILE=${F_FILE}
export CEXPER=${CEXPER}
export FLAG=${FLAG}

if  [ "${OK_SITE}" = "y" ]
then
let DUREE=${AN_FINAL_EXP}-${AN_DEBUT_EXP}
export DUREE=${DUREE}

sed -e "s,RRRRRRR,$reference_file,g" -e "s,VVVVVVV,$observation_file,g" ${R_FIC}/${R_FIC_MORE_U}/Cabauw.cfg > ${R_FIC}/${R_FIC_MORE_U}/${F_FILE}_${FLAG}_diag.cfg ;
\rm ${R_FIC}/${R_FIC_MORE_U}/Cabauw.cfg

atlas -o atlas_${F_FILE}_${FLAG} ${R_FIC}/${R_FIC_MORE_U}/${F_FILE}_${FLAG}_diag.cfg  ${R_FIC}"/"${R_FIC_ORCHIDEE_OL}"/"Output"/"${FLAG}/${CEXPER}_${DATES}${NITER_MAX}_sechiba_history.nc

directories_produced="atlas_${F_FILE}_${FLAG}"

else

if [ -z $FLAG ] 
then
atlas -o atlas_${CEXPER}${FLAG} ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg ${R_FIC}"/"${R_FIC_ORCHIDEE_OL}/Output/${CEXPER}_${DATES}${NITER_MAX}_sechiba_history.nc
else
atlas -o atlas_${CEXPER}${FLAG} ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg ${R_FIC}"/"${R_FIC_ORCHIDEE_OL}/Output/${FLAG}/${CEXPER}_${DATES}${NITER_MAX}_sechiba_history.nc
fi

directories_produced="atlas_${CEXPER}${FLAG}"

fi 

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# --------------------------------------------
for directory in $directories_produced ; do
    rm -rf ${R_FIC}/${R_FIC_ORCHIDEE_OL}/$directory
    cp -pR $directory ${R_FIC}/${R_FIC_ORCHIDEE_OL}
done
#-Q- sxnec cd $HOMEGAYA/${R_FIC_ORCHIDEE_OL}
#-Q- sxnec for directory in $directories_produced ; do
#-Q- sxnec    dods_rm pub/$USER/$directory
#-Q- sxnec    dods_cp $directory pub/$USER
#-Q- sxnec done

#---------------------------------------------
# mail
cat << END_MAIL > job_atlas.mail

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Dear $USER,
#-Q- fjvpp Your atlas job is finished on supercomputer IXIA
#-Q- fjvpp at CENG/CEA center.
#-Q- fjvpp The output files are available on ixia.ceng.cea.fr at:
#-Q- fjvpp $DMFDIR/${R_FIC_ORCHIDEE_OL}/$directories_produced
#-Q- sxnec Your atlas job is finished on supercomputer RHODES
#-Q- sxnec at IDRIS/CNRS center.
#-Q- sxnec The output files are available on rhodes.idris.fr at:
#-Q- sxnec $HOMEGAYA/${R_FIC_ORCHIDEE_OL}/$directories_produced
#-Q- sxnec A DODS access is also avalaible at:
#-Q- sxnec http://dods.idris.fr/cgi-bin/nph-dods/$USER/
#-Q- sxnec Note that you can link or unlink all files of a directory
#-Q- sxnec with dods_cp and dods_rm commands (-h option to get usage).
#-Q- sxnec To link all files of a directory called dir1:
#-Q- sxnec               dods_cp dir1 pub/\$USER
#-Q- sxnec To remove all links made previously:
#-Q- sxnec               dods_rm pub/\$USER/dir1
#-Q- sxnec Note that you must be on the same filesystem than DODS 
#-Q- sxnec directories which are located on the storage machine GAYA.
#-Q- sxnec Also you should move first to \$HOMEGAYA.
#-Q- sx6nec Your atlas job is finished on supercomputer Mercure
#-Q- sx6nec at CCRT/CEA center.
#-Q- sx6nec The output files are available on mercure.ccc.cea.fr at:
#-Q- sx6nec $DMFDIR/${R_FIC_ORCHIDEE_OL}/$directories_produced

Job started: $date_start
Job ended  : `date`

Thank you for reporting any problem to
mailto:rachid.benshila@ipsl.jussieu.fr

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

END_MAIL

#-Q- sxnec mailx -s "RHODES: atlas job" $USER < job_atlas.mail
#-Q- fjvpp mailx -s "IXIA: atlas job" $USER < job_atlas.mail
#-Q- sx6nec mail -s "Mercure: atlas job" $USER < job_atlas.mail