source: branches/publications/ORCHIDEE_2.2_r7266/ORCHIDEE/src_xml/file_def_orchidee.xml @ 7541

Last change on this file since 7541 was 7541, checked in by fabienne.maignan, 2 years ago
  1. Zhang publication on coupling factor
File size: 38.7 KB
Line 
1<!-- =========================================================================================================== -->
2<!-- file_def_orchidee.xml : Definition of output files                                                          -->
3<!--                                                                                                             -->
4<!-- Definition of each output file and the list of variables they will include.                                 -->
5<!-- Change this file by adding the files and/or variables you want to write.                                    -->
6<!-- Only variables and groups existing in field_def_orchidee.xml can be used.                                   -->
7<!--                                                                                                             -->
8<!-- Note: The keyword _AUTO_ will be changed by the drivers using libIGCM configurations. It can also be        -->
9<!-- changed manually. For example instead of _AUTO_ set :  enabled=".TRUE." or enabled=".FALSE."                -->
10<!-- output_freq="1mo" for monthly, output_freq="1d" for daily, output_freq="10800s" for 3-hour output frequency,-->
11<!-- output_level="1" for few variables, output_level="12" for writing all variables (depending on file).        -->
12<!--                                                                                                             -->
13<!-- Each file can have different output frequence, different variable content and different output_level.       --> 
14<!-- A file will contain all the variables listed in its section having level lower or equal to output_level     -->
15<!-- which is specified for the file.                                                                            -->
16<!--                                                                                                             -->
17<!-- All variables needed for the monitoring done by libIGCM are set to level="0". Set output_level=0 for file   -->
18<!-- sechiba_history, stomate_history and stomate_ipcc_history to output only these variables. These files       -->
19<!-- should have output_freq="1mo" for a correct monitoring except for SPINUP_ANALYTIC where the frequency       -->
20<!-- should be output_freq="1y".                                                                                 -->
21<!--                                                                                                             -->
22<!-- Key word compression_level activates the corresponding compresion level of netcd4/hdf5 where 0              -->
23<!-- corresponds to no compression and 4 is a middle compression here set as default.                            -->
24<!--                                                                                                             -->
25<!-- field group "remap_1xx" do only have a meaning for unstructured grid when remapping of output is activated. -->
26<!-- For this case, remap_1xx will set a corresponding freq_op done from the fortran code.                       -->
27<!-- For regular grid, this group do not contain any attributes so it'll not make any difference.                -->
28<!--                                                                                                             -->
29<!-- $HeadURL: svn://forge.ipsl.jussieu.fr/orchidee/branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/file_def_orchidee.xml $               -->
30<!-- $Date: 2021-07-30 18:36:29 +0200 (Fri, 30 Jul 2021) $                                                      -->
31<!-- $Revision: 7265 $                                                                                           -->
32<!-- =========================================================================================================== -->
33
34<file_definition type="one_file" par_access="collective" enabled=".TRUE." min_digits="4" compression_level="2" >
35
36  <!-- ========================================================================================================= -->
37  <!-- Definition of output files -->
38  <!-- ========================================================================================================= -->
39
40  <!-- Definition of output files with sechiba diagnostics -->
41
42  <!-- Sechiba file 1 -->
43  <file id="sechiba1" name="sechiba_history" output_level="5" output_freq="1800s" enabled=".TRUE.">
44
45   <field_group group_ref="remap_1mo" grid_ref="grid_landpoints_out" >
46    <!-- level 1 -->
47    <field field_ref="areas" level="0"/>
48    <field field_ref="LandPoints" level="20"/>
49    <field field_ref="contfrac" level="0"/>
50    <field field_ref="temp_sol_new_C" level="0"/>
51    <field field_ref="mrsow" level="1"/>
52    <field field_ref="precip_rain" level="0" name="rain" unit="mm/d" > @precip_rain*86400  </field>
53    <field field_ref="precip_snow" level="0" name="snowf" unit="mm/d" > @precip_snow*86400  </field>
54    <field field_ref="netrad" level="1"/>
55    <field field_ref="lai" grid_ref="grid_nvm_out" level="0"/>
56    <!-- level 2 -->
57    <field field_ref="maxvegetfrac" name="landCoverFrac" grid_ref="grid_nvm_out" level="0"/>
58    <field field_ref="vevapnu" name="evapnu" level="0" unit="mm/d" > @vevapnu*86400  </field>
59    <field field_ref="temp_air" level="0"/>
60    <field field_ref="qair" level="2"/>
61    <field field_ref="z0h" level="2"/>
62    <field field_ref="z0m" level="2"/>
63    <field field_ref="roughheight" level="2"/>
64    <field field_ref="transpir" grid_ref="grid_nvm_out" level="0"/>
65    <!-- level 3 -->
66    <field field_ref="fluxsens" level="0"/>
67    <field field_ref="fluxlat" level="0"/>
68   
69    <!-- level 4 -->
70    <field field_ref="rstruct" grid_ref="grid_nvm_out" level="4"/>
71    <field field_ref="r_soil" level="4"/>
72    <field field_ref="gpp" grid_ref="grid_nvm_out" level="0"/>
73    <field field_ref="gpp_ipcc2" level="4"/>
74    <field field_ref="nee" grid_ref="grid_nvm_out" level="0"/>
75    <field field_ref="evapot" level="4"/>
76    <field field_ref="evapot_corr" level="4"/>
77    <!-- level 5 -->
78    <field field_ref="swnet" level="2"/>
79    <field field_ref="swdown" level="0"/>
80    <field field_ref="lwdown" level="0"/>
81    <field field_ref="lwnet" level="2"/>
82    <!-- level 8 -->
83    <field field_ref="k_litt" level="2"/>
84    <field field_ref="raero" level="2"/>
85    <field field_ref="q_cdrag" level="2"/>
86    <field field_ref="wind" level="2"/>
87    <field field_ref="qsatt" level="2"/>
88    <field field_ref="gsmean" grid_ref="grid_nvm_out" level="2"/>
89    <field field_ref="humrel" grid_ref="grid_nvm_out" level="0"/>
90    <!-- level 10 -->
91    <field field_ref="rveget" grid_ref="grid_nvm_out" level="1"/>
92    <!-- level 11 -->
93    <field field_ref="tran" level="1"/>
94    <field field_ref="PAR" level="1"/>
95    <field field_ref="pb" level="1"/>
96    <field field_ref="LAImean" level="0"/>
97    <field field_ref="VPD" level="0"/>
98    <field field_ref="fvpd" level="0"/>
99    <field field_ref="HEIGHT" grid_ref="grid_nvm_out" level="2"/>
100   </field_group>
101  </file>
102
103  <!-- Sechiba file 2 -->
104  <file id="sechiba2" name="sechiba_out_2" output_level="_AUTO_" output_freq="_AUTO_" enabled="_AUTO_">
105   <field_group group_ref="remap_1mo" grid_ref="grid_landpoints_out" >
106    <!-- level 1 -->
107    <field field_ref="areas" level="1"/>
108    <field field_ref="LandPoints" level="20"/>
109    <field field_ref="contfrac" level="1"/>
110    <field field_ref="humtot_top" level="1"/>
111    <field field_ref="mrro" level="1"/>
112    <field field_ref="ptn" grid_ref="grid_ngrnd_out" level="1"/>
113    <field field_ref="wtd" level="1"/>
114    <field field_ref="tws" level="1"/>
115   
116    <!-- level 2 -->
117    <field field_ref="q_cdrag" level="2"/>
118    <field field_ref="soilalb_vis" level="2"/>
119    <field field_ref="soilalb_nir" level="2"/>
120    <field field_ref="vegalb_vis" level="2"/>
121    <field field_ref="vegalb_nir" level="2"/>
122    <field field_ref="z0m" level="2"/>
123    <field field_ref="z0h" level="2"/>
124    <field field_ref="coastalflow" level="2"/>
125    <field field_ref="riverflow" level="2"/>
126    <field field_ref="tsol_rad" level="2"/>
127    <field field_ref="vevapnu" name="evapnu" level="2" unit="mm/d" > @vevapnu*86400  </field>
128    <field field_ref="temp_sol_new_C" level="2"/>
129    <field field_ref="qsurf" level="2"/>
130    <field field_ref="fluxsens" level="2"/>
131    <field field_ref="fluxlat" level="2"/>
132    <field field_ref="emis" level="2"/>
133    <field field_ref="riversret" level="2"/>
134    <field field_ref="hydrographs" level="2"/>
135    <field field_ref="undermcr" level="2"/>
136    <field field_ref="ru_corr" level="2"/>
137    <field field_ref="ru_corr2" level="2"/>
138    <field field_ref="dr_corr" level="2"/>
139    <field field_ref="dr_force" level="2"/>
140    <field field_ref="ru_infilt" level="2"/>
141    <field field_ref="qinfilt" level="2"/>
142    <field field_ref="dr_corrnum" level="2"/>
143    <!-- level 3 -->
144    <field field_ref="vevapp_day" level="3"/>
145    <field field_ref="precip_rain" level="3" name="rain" unit="mm/d" > @precip_rain*86400  </field>
146    <field field_ref="precip_snow" level="3" name="snowf" unit="mm/d" > @precip_snow*86400  </field>
147    <field field_ref="netrad" level="3"/>
148    <field field_ref="lai" grid_ref="grid_nvm_out" level="3"/>
149    <field field_ref="basinmap" level="3"/>
150    <field field_ref="nbrivers" level="3"/>
151    <field field_ref="check_infilt" level="3"/>
152    <field field_ref="check_tr" level="3"/>
153    <field field_ref="check_over" level="3"/>
154    <field field_ref="check_under" level="3"/>
155     
156
157    <!-- level 4 -->
158    <field field_ref="vevapsno" name="subli" level="4" unit="mm/d" > @vevapsno*86400  </field>
159    <field field_ref="runoff" name="runoff" level="4" unit="mm/d" > @runoff*86400  </field>
160    <field field_ref="drainage" name="drainage" level="4" unit="mm/d" > @drainage*86400  </field>
161    <field field_ref="temp_air" level="4"/>
162    <field field_ref="qair" level="4"/>
163    <field field_ref="albedo_vis" level="4"/>
164    <field field_ref="albedo_nir" level="4"/>
165    <field field_ref="roughheight" level="4"/>
166    <field field_ref="transpir" grid_ref="grid_nvm_out" level="4"/>
167    <field field_ref="inter" grid_ref="grid_nvm_out" level="4"/>
168    <field field_ref="evapnu_soil" grid_ref="grid_nstm_out" level="4"/>
169    <field field_ref="drainage_soil" grid_ref="grid_nstm_out" level="4"/>
170    <field field_ref="transpir_soil" grid_ref="grid_nstm_out" level="4"/>
171    <field field_ref="runoff_soil" grid_ref="grid_nstm_out" level="4"/>
172    <!-- level 5 -->
173    <field field_ref="tsol_max" level="5"/>
174    <field field_ref="tsol_min" level="5"/>
175    <field field_ref="snow" level="5"/>
176    <field field_ref="snowage" level="5"/>
177    <field field_ref="snownobio" grid_ref="grid_nnobio_out" level="5"/>
178    <field field_ref="snownobioage" grid_ref="grid_nnobio_out" level="5"/>
179    <field field_ref="snowmelt" level="5"/>
180    <field field_ref="tot_melt" level="5"/>
181    <field field_ref="snowmelt_from_maxmass" level="5"/>
182    <field field_ref="soilcap" level="5"/>
183    <field field_ref="vegetfrac" grid_ref="grid_nvm_out" level="5"/>
184    <field field_ref="maxvegetfrac" grid_ref="grid_nvm_out" level="5"/>
185    <field field_ref="nobiofrac" grid_ref="grid_nnobio_out" level="5"/>
186    <!-- level 6 -->
187    <field field_ref="humtot" level="6"/>
188    <field field_ref="humtot_liquid" level="6"/>
189    <field field_ref="tmc" grid_ref="grid_nstm_out" level="6"/>
190    <field field_ref="qsintveg" grid_ref="grid_nvm_out" level="6"/>
191    <field field_ref="rstruct" grid_ref="grid_nvm_out" level="6"/>
192    <field field_ref="r_soil" level="6"/>
193    <field field_ref="gpp" grid_ref="grid_nvm_out" level="6"/>
194    <field field_ref="nee" grid_ref="grid_nvm_out" level="6"/>
195    <field field_ref="maint_resp" grid_ref="grid_nvm_out" level="6"/>
196    <field field_ref="hetero_resp" grid_ref="grid_nvm_out" level="6"/>
197    <field field_ref="growth_resp" grid_ref="grid_nvm_out" level="6"/>
198    <field field_ref="npp" grid_ref="grid_nvm_out" level="6"/>
199    <field field_ref="precisol" grid_ref="grid_nvm_out" level="6"/>
200    <field field_ref="drysoil_frac" level="6"/>
201    <field field_ref="evapot" level="6"/>
202    <field field_ref="evapot_corr" level="6"/>
203    <field field_ref="twbr" level="6"/>
204    <!-- level 7 -->
205    <field field_ref="swnet" level="7"/>
206    <field field_ref="swdown" level="7"/>
207    <field field_ref="lwdown" level="7"/>
208    <field field_ref="lwnet" level="7"/>
209    <field field_ref="diffevap" level="7"/>
210    <!-- level 8 -->
211    <field field_ref="fastr" level="8"/>
212    <field field_ref="slowr" level="8"/>
213    <field field_ref="streamr" level="8"/>
214    <field field_ref="floodr" level="8"/>
215    <field field_ref="floodh" level="8"/>
216    <field field_ref="pondr" level="8"/>
217    <field field_ref="laker" level="8"/>
218    <field field_ref="irrigation" name="irrigation" level="8" unit="mm/d" > @irrigation*86400  </field>
219    <field field_ref="netirrig" name="netirrig" level="8" unit="mm/d" > @netirrig*86400  </field>
220    <field field_ref="irrigmap" level="8"/>
221    <field field_ref="floodmap" level="8"/>
222    <field field_ref="swampmap" level="8"/>
223
224    <!-- for water budget control -->
225    <!-- Note! The _daily variables need an output frequency of at least one day -->
226    <field field_ref="delsoilmoist_daily" level="8" />
227    <field field_ref="delintercept_daily" level="8" />
228    <field field_ref="delswe_daily" level="8" />
229    <field field_ref="delfastr_daily" level="8" />
230    <field field_ref="delslowr_daily" level="8" />
231    <field field_ref="delstreamr_daily" level="8" />
232    <field field_ref="dellaker_daily" level="8" />
233    <field field_ref="delpondr_daily" level="8" />
234    <field field_ref="delfloodr_daily" level="8" />
235    <field field_ref="delstock_routing_daily" level="8" />
236    <field field_ref="vevapflo" name="evapflo" level="8" unit="mm/d" > @vevapflo*86400 </field>
237
238    <!-- level 9 -->
239    <field field_ref="beta" level="9"/>
240    <field field_ref="raero" level="9"/>
241    <field field_ref="wind" level="9"/>
242    <field field_ref="qsatt" level="9"/>
243    <field field_ref="vbeta1" level="9"/>
244    <field field_ref="vbeta4" level="9"/>
245    <field field_ref="gsmean" grid_ref="grid_nvm_out" level="9"/>
246    <field field_ref="vbeta5" level="9"/>
247    <field field_ref="reinf_slope" level="9"/>
248    <field field_ref="njsc" level="9"/>
249    <field field_ref="humrel" grid_ref="grid_nvm_out" level="9"/>
250    <!-- level 10 -->
251    <field field_ref="cimean" grid_ref="grid_nvm_out" level="10"/>
252    <field field_ref="vbeta3" grid_ref="grid_nvm_out" level="10"/>
253    <field field_ref="rveget" grid_ref="grid_nvm_out" level="10"/>
254    <field field_ref="vbeta2" grid_ref="grid_nvm_out" level="10"/>
255    <field field_ref="qsintmax" grid_ref="grid_nvm_out" level="10"/>
256    <field field_ref="PAR" level="10"/>
257    <field field_ref="PARsun" grid_ref="grid_nvm_out" level="10"/>
258    <field field_ref="PARsh" grid_ref="grid_nvm_out" level="10"/>
259    <field field_ref="laisun" grid_ref="grid_nvm_out" level="10"/>
260    <field field_ref="laish" grid_ref="grid_nvm_out" level="10"/>
261    <field field_ref="PARsuntab" grid_ref="grid_nlaip1_out" level="10"/>
262    <field field_ref="PARshtab" grid_ref="grid_nlaip1_out" level="10"/>
263    <field field_ref="coszang" level="10"/>
264    <field field_ref="PARdf" level="10"/>
265    <field field_ref="PARdr" level="10"/>
266    <field field_ref="flx_fertil_no" grid_ref="grid_nvm_out" level="10"/>
267    <field field_ref="CRF" grid_ref="grid_nvm_out" level="10"/>
268    <field field_ref="flx_co2_bbg_year" level="10"/>
269    <field field_ref="N_qt_WRICE_year" level="10"/>
270    <field field_ref="N_qt_OTHER_year" level="10"/>
271    <field field_ref="flx_iso" grid_ref="grid_nvm_out" level="10"/>
272    <field field_ref="flx_mono" grid_ref="grid_nvm_out" level="10"/>
273    <field field_ref="flx_ORVOC" grid_ref="grid_nvm_out" level="10"/>
274    <field field_ref="flx_MBO" grid_ref="grid_nvm_out" level="10"/>
275    <field field_ref="flx_methanol" grid_ref="grid_nvm_out" level="10"/>
276    <field field_ref="flx_acetone" grid_ref="grid_nvm_out" level="10"/>
277    <field field_ref="flx_acetal" grid_ref="grid_nvm_out" level="10"/>
278    <field field_ref="flx_formal" grid_ref="grid_nvm_out" level="10"/>
279    <field field_ref="flx_acetic" grid_ref="grid_nvm_out" level="10"/>
280    <field field_ref="flx_formic" grid_ref="grid_nvm_out" level="10"/>
281    <field field_ref="flx_no_soil" grid_ref="grid_nvm_out" level="10"/>
282    <field field_ref="flx_no" grid_ref="grid_nvm_out" level="10"/>
283    <field field_ref="pb" level="11"/>
284    <field field_ref="slowflow" level="11"/>
285    <field field_ref="qsintveg_tot" level="11"/>
286    <field field_ref="LAImean" level="11"/>
287    <field field_ref="mcs" grid_ref="grid_nslm_out" level="11"/>
288    <field field_ref="mcr" grid_ref="grid_nslm_out" level="11"/>
289    <field field_ref="nvg" grid_ref="grid_nslm_out" level="11"/>
290    <field field_ref="alphavg" grid_ref="grid_nslm_out" level="11"/>
291    <field field_ref="nroot" grid_ref="grid_nslm_out" level="11"/>
292    <field field_ref="dlh" grid_ref="grid_nslm_out" level="11"/>
293    <field field_ref="water2infilt" grid_ref="grid_nstm_out" level="11"/>
294    <field field_ref="kk_moy" grid_ref="grid_nslm_out" level="11"/>
295    <field field_ref="psi_moy" grid_ref="grid_nslm_out" level="11"/>
296    <field field_ref="profil_froz_hydro" grid_ref="grid_nslm_out" level="11"/>
297    <field field_ref="pkappa" grid_ref="grid_ngrnd_out"  level="11"/>
298    <field field_ref="pkappa_snow" grid_ref="grid_nsnow_out" level="11"/>
299    <field field_ref="pcapa" grid_ref="grid_ngrnd_out"  level="11"/>
300    <field field_ref="pcapa_spec" grid_ref="grid_ngrnd_out"  level="11"/>
301    <field field_ref="pcapa_snow" grid_ref="grid_nsnow_out"  level="11"/>
302    <field field_ref="snowtemp" grid_ref="grid_nsnow_out"  level="0"/>
303    <field field_ref="snowtemp_weighted"  level="11"/>
304    <field field_ref="snowliq" grid_ref="grid_nsnow_out"  level="11"/>
305    <field field_ref="snowdz" grid_ref="grid_nsnow_out"  level="0"/>
306    <field field_ref="snowrho" grid_ref="grid_nsnow_out"  level="0"/>
307    <field field_ref="snowheat" grid_ref="grid_nsnow_out"  level="11"/>
308    <field field_ref="snowgrain" grid_ref="grid_nsnow_out"  level="11"/>
309    <field field_ref="snowdepth"  level="11"/>
310    <field field_ref="mc" grid_ref="grid_nslm_nstm_out" level="0"/>   <!-- mc is a 4 dimensional variable -->
311    <field field_ref="znetco2" level="11" />
312    <field field_ref="zcarblu" level="11" />
313    <field field_ref="zcarbwh" level="11" />
314    <field field_ref="zcarbha" level="11" />
315    </field_group>
316  </file>
317
318  <!-- Sechiba file 3 -->
319  <!-- This files contains all variables having more than one vertical axis -->
320  <file id="sechiba3" name="sechiba_history_4dim" output_level="_AUTO_" output_freq="_AUTO_" enabled="_AUTO_">
321   <field_group group_ref="remap_1mo" grid_ref="grid_landpoints_out" >
322    <field field_ref="areas" level="1"/>
323    <field field_ref="contfrac" level="1"/>
324    <field field_ref="mc" grid_ref="grid_nslm_nstm_out" level="1"/>
325    <field field_ref="mc_read_current" grid_ref="grid_nslm_nstm_out" level="2"/>
326    <field field_ref="kfact_root" grid_ref="grid_nslm_nstm_out" level="3"/>
327    <field field_ref="vegetmax_soil" grid_ref="grid_nvm_nstm_out" level="3"/>
328    <field field_ref="profil_froz_hydro_ns" grid_ref="grid_nslm_nstm_out" level="11"/>
329   </field_group> 
330  </file>
331
332
333  <!-- Sechiba alma file 1 -->
334  <file id="sechiba1_alma" name="sechiba_history_alma" output_level="10" output_freq="1mo" enabled=".FALSE.">
335   <field_group group_ref="remap_1mo" grid_ref="grid_landpoints_out" >
336    <field field_ref="areas" level="1"/>
337    <field field_ref="LandPoints" level="20"/>
338    <field field_ref="contfrac" level="1"/>
339    <field field_ref="soilflx" level="1"/>
340    <field field_ref="Qv" level="1"/>
341    <field field_ref="runoff" name="Qs" level="1"/>
342    <field field_ref="drainage" name="Qsb" level="1"/>
343    <field field_ref="coastalflow" name="CoastalFlow" level="1"/>
344    <field field_ref="riverflow" name="RiverFlow" level="1"/>
345    <field field_ref="surfheat_incr" level="1"/>
346    <field field_ref="coldcont_incr" level="1"/>
347    <field field_ref="fluxsens" name="Qh" level="1"/>
348    <field field_ref="fluxlat" name="Qle" level="1"/>
349    <field field_ref="lwnet" name="LWnet" level="1"/>
350    <field field_ref="swnet" name="SWnet" level="1"/>
351    <field field_ref="precip_rain" name="Rainf" level="1"/>
352    <field field_ref="precip_snow" name="Snowf" level="1"/>
353    <field field_ref="vevapp" name="Evap" level="1"/>
354    <field field_ref="tot_melt" name="Qsm" level="1"/>
355    <field field_ref="irrigation" name="Qirrig" level="1"/>
356    <field field_ref="netirrig" name="Qirrig_req" long_name="Irrigation requirement" level="1"/>
357    <field field_ref="temp_sol_new" level="1"/>
358    <field field_ref="fastr" level="1"/>
359    <field field_ref="slowr" level="1"/>
360    <field field_ref="streamr" level="1"/>
361    <field field_ref="laker" level="1"/>
362    <field field_ref="pondr" level="1"/>
363    <field field_ref="albedo_glob" level="1"/>
364    <field field_ref="soilalb_bg" grid_ref="grid_albtyp_out" name="Albedo_Background" level="1"/>
365    <field field_ref="SurfStor" level="1"/>
366    <field field_ref="snow" name="SWE" long_name="Snow Water Equivalent" level="1"/>
367    <field field_ref="soilwet" level="1"/>
368    <field field_ref="evapot_corr" name="PotEvap" long_name="Potential evapotranspiration" unit="kg/m^2/s" level="1"/>
369    <field field_ref="evapot" name="PotEvapOld" long_name="Potential evapotranspiration old method" unit="kg/m^2/s" level="1"/>
370    <field field_ref="ECanop" level="1"/>
371    <field field_ref="TVeg" level="1"/>
372    <field field_ref="vevapsno" name="SubSnow" level="1"/>
373    <field field_ref="irrigmap" name="IrrigationMap" level="1"/>
374    <field field_ref="floodmap" name="FloodplainsMap" level="1"/>
375    <field field_ref="swampmap" name="SwampMap" level="1"/>
376    <field field_ref="hydrographs" name="Dis" level="1"/>
377    <field field_ref="gpp" grid_ref="grid_nvm_out" name="GPP" level="1"/>
378    <field field_ref="nee" grid_ref="grid_nvm_out" name="NEE" level="1"/>
379    <field field_ref="maint_resp" grid_ref="grid_nvm_out" level="1"/>
380    <field field_ref="hetero_resp" grid_ref="grid_nvm_out" level="1"/>
381    <field field_ref="growth_resp" grid_ref="grid_nvm_out" level="1"/>
382    <field field_ref="npp" grid_ref="grid_nvm_out" level="1"/>
383    <field field_ref="z0m" name="Z0m" long_name="Roughness height for momentum" level="1"/>
384    <field field_ref="z0h" name="Z0h" long_name="Roughness height for heat" level="1"/>
385    <field field_ref="roughheight" name="EffectHeight" long_name="Effective displacement height (h-d)" level="1"/>
386    <field field_ref="delsoilmoist" level="1"/>
387    <field field_ref="delintercept" level="1"/>
388    <field field_ref="delswe" level="1"/>
389    <field field_ref="vevapnu" name="ESoil" level="1"/>
390    <field field_ref="vevapflo" name="EWater" level="1"/>
391    <field field_ref="ACond" level="1"/>
392    <field field_ref="temp_air" name="Tair" level="2"/>
393    <field field_ref="qair" name="Qair" level="2"/>
394    <field field_ref="vegetfrac" grid_ref="grid_nvm_out" level="3"/>
395    <field field_ref="maxvegetfrac" grid_ref="grid_nvm_out" level="3"/>
396    <field field_ref="nobiofrac" grid_ref="grid_nnobio_out" level="3"/>
397    <field field_ref="soilmoist" grid_ref="grid_nslm_out" level="7"/>
398    <field field_ref="humtot" name="RootMoist" long_name="Root zone soil water" level="1"/>
399    <field field_ref="ptn" grid_ref="grid_ngrnd_out" name="SoilTemp" level="7"/>
400    <field field_ref="vbeta1" name="SnowFrac" level="7"/>
401    <field field_ref="albedo_snow" level="7"/>
402    <field field_ref="snowdz" grid_ref="grid_nsnow_out" name="SnowDepth" level="7"/>
403    <field field_ref="temp_sol_new" name="RadT" level="1"/>
404    <field field_ref="twbr" level="1"/>
405   </field_group>
406  </file>
407
408  <!-- Sechiba alma file 2 -->
409  <file id="sechiba2_alma" name="sechiba_out_2_alma" output_level="10" output_freq="1d" enabled=".FALSE.">
410   <field_group group_ref="remap_1d" grid_ref="grid_landpoints_out" >
411    <field field_ref="areas" level="1"/>
412    <field field_ref="LandPoints" level="20"/>
413    <field field_ref="contfrac" level="1"/>
414    <field field_ref="soilflx" level="1"/>
415    <field field_ref="Qv" level="1"/>
416    <field field_ref="runoff" name="Qs" level="1"/>
417    <field field_ref="drainage" name="Qsb" level="1"/>
418    <field field_ref="coastalflow" name="CoastalFlow" level="1"/>
419    <field field_ref="riverflow" name="RiverFlow" level="1"/>
420    <field field_ref="surfheat_incr" level="1"/>
421    <field field_ref="coldcont_incr" level="1"/>
422    <field field_ref="fluxsens" name="Qh" level="1"/>
423    <field field_ref="fluxlat" name="Qle" level="1"/>
424    <field field_ref="lwnet" name="LWnet" level="1"/>
425    <field field_ref="swnet" name="SWnet" level="1"/>
426    <field field_ref="precip_rain" name="Rainf" level="1"/>
427    <field field_ref="precip_snow" name="Snowf" level="1"/>
428    <field field_ref="vevapp" name="Evap" level="1"/>
429    <field field_ref="tot_melt" name="Qsm" level="1"/>
430    <field field_ref="irrigation" name="Qirrig" level="1"/>
431    <field field_ref="netirrig" name="Qirrig_req" long_name="Irrigation requirement" level="1"/>
432    <field field_ref="temp_sol_new" level="1"/>
433    <field field_ref="fastr" level="1"/>
434    <field field_ref="slowr" level="1"/>
435    <field field_ref="streamr" level="1"/>
436    <field field_ref="laker" level="1"/>
437    <field field_ref="pondr" level="1"/>
438    <field field_ref="albedo_glob" level="1"/>
439    <field field_ref="SurfStor" level="1"/>
440    <field field_ref="snow" name="SWE" long_name="Snow Water Equivalent" level="1"/>
441    <field field_ref="soilwet" level="1"/>
442    <field field_ref="ECanop" level="1"/>
443    <field field_ref="TVeg" level="1"/>
444    <field field_ref="vevapsno" name="SubSnow" level="1"/>
445    <field field_ref="irrigmap" name="IrrigationMap" level="1"/>
446    <field field_ref="floodmap" name="FloodplainsMap" level="1"/>
447    <field field_ref="swampmap" name="SwampMap" level="1"/>
448    <field field_ref="hydrographs" name="Dis" level="1"/>
449    <field field_ref="gpp" grid_ref="grid_nvm_out" name="GPP" level="1"/>
450    <field field_ref="nee" grid_ref="grid_nvm_out" name="NEE" level="1"/>
451    <field field_ref="maint_resp" grid_ref="grid_nvm_out" level="1"/>
452    <field field_ref="hetero_resp" grid_ref="grid_nvm_out" level="1"/>
453    <field field_ref="growth_resp" grid_ref="grid_nvm_out" level="1"/>
454    <field field_ref="npp" grid_ref="grid_nvm_out" level="1"/>
455    <field field_ref="delsoilmoist" level="1"/>
456    <field field_ref="delintercept" level="1"/>
457    <field field_ref="delswe" level="1"/>
458    <field field_ref="vevapnu" name="ESoil" level="1"/>
459    <field field_ref="vevapflo" name="EWater" level="1"/>
460    <field field_ref="ACond" level="1"/>
461    <field field_ref="soilmoist" grid_ref="grid_nslm_out" level="7"/>
462    <field field_ref="humtot" name="RootMoist" long_name="Root zone soil water" level="1"/>
463    <field field_ref="ptn" grid_ref="grid_ngrnd_out" name="SoilTemp" level="7"/>
464    <field field_ref="vbeta1" name="SnowFrac" level="7"/>
465    <field field_ref="albedo_snow" level="7"/>
466    <field field_ref="snowdz" grid_ref="grid_nsnow_out" name="SnowDepth" level="7"/>
467    <field field_ref="vegetfrac" grid_ref="grid_nvm_out" level="3"/>
468    <field field_ref="maxvegetfrac" grid_ref="grid_nvm_out" level="3"/>
469    <field field_ref="nobiofrac" grid_ref="grid_nnobio_out" level="3"/>
470    <field field_ref="temp_sol_new" name="RadT" level="5"/>
471   </field_group>
472
473  </file>
474
475  <!-- Definition of files with stomate diagnostics -->
476  <!-- Stomate file 1 -->
477  <file id="stomate1" name="stomate_history" output_level="_AUTO_" output_freq="_AUTO_" enabled="_AUTO_">
478   <field_group group_ref="remap_1mo" grid_ref="grid_landpoints_out" >
479     
480    <!-- level 1 -->
481    <field field_ref="RESOLUTION_X" level="0"/>
482    <field field_ref="RESOLUTION_Y" level="0"/>
483    <field field_ref="CONTFRAC_STOMATE" level="0"/>
484    <field field_ref="areas" level="0"/>
485    <field field_ref="T2M_MONTH" level="1"/>
486    <field field_ref="T2M_WEEK" level="1"/>
487    <field field_ref="firefrac" grid_ref="grid_nvm_out" level="1"/>
488    <field field_ref="CO2_FIRE" grid_ref="grid_nvm_out" level="1"/>
489    <field field_ref="CO2_TAKEN" grid_ref="grid_nvm_out" level="1"/>
490    <field field_ref="LAI" grid_ref="grid_nvm_out" level="1"/>
491    <field field_ref="VEGET_COV_MAX" grid_ref="grid_nvm_out" level="0"/>
492    <field field_ref="NPP_STOMATE" grid_ref="grid_nvm_out" level="0"/>
493    <field field_ref="GPP" grid_ref="grid_nvm_out" level="0"/>
494    <!-- level 2 -->
495    <field field_ref="LEAF_M" grid_ref="grid_nvm_out" level="2"/>
496    <field field_ref="SAP_M_AB" grid_ref="grid_nvm_out" level="2"/>
497    <field field_ref="SAP_M_BE" grid_ref="grid_nvm_out" level="2"/>
498    <field field_ref="HEART_M_AB" grid_ref="grid_nvm_out" level="2"/>
499    <field field_ref="HEART_M_BE" grid_ref="grid_nvm_out" level="2"/>
500    <field field_ref="ROOT_M" grid_ref="grid_nvm_out" level="2"/>
501    <field field_ref="FRUIT_M" grid_ref="grid_nvm_out" level="2"/>
502    <field field_ref="RESERVE_M" grid_ref="grid_nvm_out" level="2"/>
503    <field field_ref="MAINT_RESP" grid_ref="grid_nvm_out" level="0"/>
504    <field field_ref="GROWTH_RESP" grid_ref="grid_nvm_out" level="0"/>
505    <!-- level 3 -->
506    <field field_ref="IND" grid_ref="grid_nvm_out" level="3"/>
507    <field field_ref="ADAPTATION" grid_ref="grid_nvm_out" level="3"/>
508    <field field_ref="REGENERATION" grid_ref="grid_nvm_out" level="3"/>
509    <field field_ref="CN_IND" grid_ref="grid_nvm_out" level="3"/>
510    <field field_ref="WOODMASS_IND" grid_ref="grid_nvm_out" level="3"/>
511    <field field_ref="MOISTRESS" grid_ref="grid_nvm_out" level="3"/>
512    <field field_ref="HET_RESP" grid_ref="grid_nvm_out" level="0"/>
513    <!-- level 4 -->
514    <field field_ref="SAP_AB_TURN" grid_ref="grid_nvm_out" level="4"/>
515    <field field_ref="ROOT_TURN" grid_ref="grid_nvm_out" level="4"/>
516    <field field_ref="FRUIT_TURN" grid_ref="grid_nvm_out" level="4"/>
517    <field field_ref="TOTAL_BM_LITTER" grid_ref="grid_nvm_out" level="0"/>
518    <field field_ref="LEAF_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
519    <field field_ref="SAP_AB_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
520    <field field_ref="SAP_BE_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
521    <field field_ref="HEART_AB_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
522    <field field_ref="HEART_BE_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
523    <field field_ref="ROOT_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
524    <field field_ref="FRUIT_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
525    <field field_ref="RESERVE_BM_LITTER" grid_ref="grid_nvm_out" level="4"/>
526    <field field_ref="TOTAL_M" grid_ref="grid_nvm_out" level="0"/>
527    <field field_ref="TOTAL_TURN" grid_ref="grid_nvm_out" level="4"/>
528    <field field_ref="LEAF_TURN" grid_ref="grid_nvm_out" level="4"/>
529    <!-- level 5 -->
530    <field field_ref="LITTER_STR_AB" grid_ref="grid_nvm_out" level="5"/>
531    <field field_ref="LITTER_MET_AB" grid_ref="grid_nvm_out" level="5"/>
532    <field field_ref="LITTER_STR_BE" grid_ref="grid_nvm_out" level="5"/>
533    <field field_ref="LITTER_MET_BE" grid_ref="grid_nvm_out" level="5"/>
534    <field field_ref="DEADLEAF_COVER" level="5"/>
535    <field field_ref="TOTAL_SOIL_CARB" grid_ref="grid_nvm_out" level="0"/>
536    <field field_ref="CARBON_ACTIVE" grid_ref="grid_nvm_out" level="5"/>
537    <field field_ref="CARBON_SLOW" grid_ref="grid_nvm_out" level="5"/>
538    <field field_ref="CARBON_PASSIVE" grid_ref="grid_nvm_out" level="5"/>
539    <field field_ref="LITTERHUM" level="5"/>
540    <field field_ref="BM_ALLOC_LEAF" grid_ref="grid_nvm_out" level="5"/>
541    <field field_ref="BM_ALLOC_SAP_AB" grid_ref="grid_nvm_out" level="5"/>
542    <field field_ref="BM_ALLOC_SAP_BE" grid_ref="grid_nvm_out" level="5"/>
543    <field field_ref="BM_ALLOC_ROOT" grid_ref="grid_nvm_out" level="5"/>
544    <field field_ref="BM_ALLOC_FRUIT" grid_ref="grid_nvm_out" level="5"/>
545    <field field_ref="BM_ALLOC_RES" grid_ref="grid_nvm_out" level="5"/>
546    <field field_ref="HERBIVORES" grid_ref="grid_nvm_out" level="5"/>
547    <field field_ref="TURNOVER_TIME" grid_ref="grid_nvm_out" level="5"/>
548    <field field_ref="PROD10" grid_ref="grid_P11_out" level="5"/>
549    <field field_ref="FLUX10" grid_ref="grid_P10_out" level="5"/>
550    <field field_ref="PROD100" grid_ref="grid_P101_out" level="5"/>
551    <field field_ref="FLUX100" grid_ref="grid_P100_out" level="5"/>
552    <field field_ref="CONVFLUX" level="0"/>
553    <field field_ref="CFLUX_PROD10" level="0"/>
554    <field field_ref="CFLUX_PROD100" level="0"/>
555    <field field_ref="fDeforestToProduct" level="5"/>
556    <field field_ref="fDeforestToProduct_post" level="5"/>
557    <field field_ref="PROD10_HARVEST" grid_ref="grid_P11_out" level="5"/>
558    <field field_ref="FLUX10_HARVEST" grid_ref="grid_P10_out" level="5"/>
559    <field field_ref="PROD100_HARVEST" grid_ref="grid_P101_out" level="5"/>
560    <field field_ref="FLUX100_HARVEST" grid_ref="grid_P100_out" level="5"/>
561    <field field_ref="CONVFLUX_HARVEST" level="5"/>
562    <field field_ref="CFLUX_PROD10_HARVEST" level="5"/>
563    <field field_ref="CFLUX_PROD100_HARVEST" level="5"/>
564    <field field_ref="WOOD_HARVEST" level="0"/>
565    <field field_ref="WOOD_HARVEST_PFT" grid_ref="grid_nvm_out" level="0"/>
566    <field field_ref="HARVEST_ABOVE" level="0"/>
567    <!-- level 6 -->
568    <field field_ref="VCMAX" grid_ref="grid_nvm_out" level="6"/>
569    <field field_ref="LEAF_AGE" grid_ref="grid_nvm_out" level="6"/>
570    <field field_ref="mortality" grid_ref="grid_nvm_out" level="6"/>
571    <field field_ref="firedeath" grid_ref="grid_nvm_out" level="6"/>
572    <field field_ref="IND_ESTAB" grid_ref="grid_nvm_out" level="6"/>
573    <field field_ref="ESTABTREE" level="6"/>
574    <field field_ref="ESTABGRASS" level="6"/>
575    <field field_ref="light_death" grid_ref="grid_nvm_out" level="6"/>
576    <!-- level 7 -->
577    <field field_ref="AGE" grid_ref="grid_nvm_out" level="7"/>
578    <field field_ref="HEIGHT" grid_ref="grid_nvm_out" level="7"/>
579    <!-- level 9 -->
580    <field field_ref="WHEN_GROWTHINIT" grid_ref="grid_nvm_out" level="9"/>
581    <field field_ref="PFTPRESENT" grid_ref="grid_nvm_out" level="9"/>
582    <field field_ref="GDD_MIDWINTER" grid_ref="grid_nvm_out" level="9"/>
583    <field field_ref="GDD_M5_DORMANCE" grid_ref="grid_nvm_out" level="9"/>
584    <field field_ref="NCD_DORMANCE" grid_ref="grid_nvm_out" level="9"/>
585    <field field_ref="ALLOW_INITPHENO" grid_ref="grid_nvm_out" level="9"/>
586    <field field_ref="BEGIN_LEAVES" grid_ref="grid_nvm_out" level="9"/>
587    <field field_ref="t2m_longterm" level="9"/>
588    <field field_ref="TSEASON"  level="9"/>
589    <field field_ref="TMIN_SPRING_TIME" grid_ref="grid_nvm_out" level="9"/>
590    <field field_ref="ONSET_DATE" grid_ref="grid_nvm_out" level="9"/>
591    <field field_ref="FPC_MAX" grid_ref="grid_nvm_out" level="9"/>
592    <field field_ref="MAXFPC_LASTYEAR" grid_ref="grid_nvm_out" level="9"/>
593    <field field_ref="clitterlut" grid_ref="grid_nlut_out" level="9"/>
594    <field field_ref="csoillut" grid_ref="grid_nlut_out" level="9"/>
595    <field field_ref="cveglut" grid_ref="grid_nlut_out" level="9"/>
596    <field field_ref="lailut" grid_ref="grid_nlut_out" level="9"/>
597    <field field_ref="ctotfirelut" grid_ref="grid_nlut_out" level="9"/>
598    <field field_ref="ralut" grid_ref="grid_nlut_out" level="9"/>
599    <field field_ref="rhlut" grid_ref="grid_nlut_out" level="9"/>
600    <field field_ref="npplut" grid_ref="grid_nlut_out" level="9"/>
601    <field field_ref="cproductlut" grid_ref="grid_nlut_out" level="9"/>
602    <field field_ref="flulccproductlut" grid_ref="grid_nlut_out" level="9"/>
603    <field field_ref="flulccresiduelut" grid_ref="grid_nlut_out" level="9"/>
604    <field field_ref="flulccresidue" grid_ref="grid_nvm_out" level="9"/>
605    <field field_ref="flulccatmlut" grid_ref="grid_nlut_out" level="9"/>
606    <field field_ref="necbLut" grid_ref="grid_nlut_out" level="9"/>
607    <field field_ref="fProductDecomp" level="9"/>
608
609    <!-- level 10 -->
610    <field field_ref="FIREINDEX" grid_ref="grid_nvm_out" level="10"/>
611    <field field_ref="HET_RESP_SOIL" grid_ref="grid_nvm_out" level="10"/>
612    <field field_ref="HET_RESP_LITTER" grid_ref="grid_nvm_out" level="10"/>
613 
614   </field_group> 
615   
616  </file>
617
618  <!-- Stomate file 2 -->
619  <file id="stomate2" name="stomate_ipcc_history" output_level="_AUTO_" output_freq="_AUTO_" enabled="_AUTO_">
620   <field_group group_ref="remap_1mo" grid_ref="grid_landpoints_out" >
621    <!-- level 1 -->
622    <field field_ref="RESOLUTION_X" level="1"/>
623    <field field_ref="RESOLUTION_Y" level="1"/>
624    <field field_ref="CONTFRAC_STOMATE" level="0"/>
625    <field field_ref="areas" level="0"/>
626    <field field_ref="cVeg" level="1"/>
627    <field field_ref="cVegGrass" level="1"/>
628    <field field_ref="cVegCrop" level="0"/>
629    <field field_ref="cVegTree" level="1"/>
630    <field field_ref="cLitter" level="1"/>
631    <field field_ref="cLitterGrass" level="1"/>
632    <field field_ref="cLitterCrop" level="0"/>
633    <field field_ref="cLitterTree" level="1"/>
634    <field field_ref="cOther" level="1"/>
635    <field field_ref="cSoil" level="1"/>
636    <field field_ref="cSoilGrass" level="1"/>
637    <field field_ref="cSoilCrop" level="0"/>
638    <field field_ref="cSoilTree" level="1"/>
639    <field field_ref="cLand" level="1"/>
640    <field field_ref="cProduct" level="0"/>
641    <field field_ref="cMassVariation" level="0"/>
642    <field field_ref="lai_ipcc" level="0"/>
643    <field field_ref="gpp_ipcc" level="0"/>
644    <field field_ref="ra" level="0"/>
645    <field field_ref="raGrass" level="1"/>
646    <field field_ref="raCrop" level="0"/>
647    <field field_ref="raTree" level="1"/>
648    <field field_ref="npp_ipcc" level="1"/>
649    <field field_ref="rh" level="1"/>
650    <field field_ref="rhSoil" level="1"/>
651    <field field_ref="rhLitter" level="1"/>
652    <field field_ref="resp_maint_part_weighted" grid_ref="grid_nparts_out" level="1"/>
653    <field field_ref="resp_growth_part_weighted" grid_ref="grid_nparts_out" level="1"/>
654    <field field_ref="tSoilPools" grid_ref="grid_ncarb_out" level="1"/>
655    <field field_ref="fFire" level="1"/>
656    <field field_ref="fHarvest" level="1"/>
657    <field field_ref="fWoodharvest" level="0"/>
658    <field field_ref="fLuc" level="0"/>
659    <field field_ref="fAnthDisturb" level="1"/>
660    <field field_ref="nbp" level="0"/>
661    <field field_ref="fVegLitter" level="0"/>
662    <field field_ref="fLitterSoil" level="0"/>
663    <field field_ref="cLeaf" level="0"/>
664    <field field_ref="cWood" level="0"/>
665    <field field_ref="cStem" level="1"/>
666    <field field_ref="cRoot" level="0"/>
667    <field field_ref="cMisc" level="0"/>
668    <field field_ref="cLitterAbove" level="0"/>
669    <field field_ref="cLitterBelow" level="0"/>
670    <field field_ref="cSoilFast" level="0"/>
671    <field field_ref="cSoilMedium" level="0"/>
672    <field field_ref="cSoilSlow" level="0"/>
673    <field field_ref="cSoilPools" grid_ref="grid_ncarb_out" level="1"/>
674    <field field_ref="landCoverFrac" grid_ref="grid_nvm_out" level="1"/>
675    <field field_ref="treeFracPrimDec" level="0"/>
676    <field field_ref="treeFracPrimEver" level="0"/>
677    <field field_ref="c3PftFrac" level="0"/>
678    <field field_ref="c4PftFrac" level="0"/>
679    <field field_ref="rGrowth" level="0"/>
680    <field field_ref="rMaint" level="0"/>
681    <field field_ref="rGrowth_ipcc" level="1"/>
682    <field field_ref="rMaint_ipcc" level="1"/>
683    <field field_ref="nppLeaf" level="0"/>
684    <field field_ref="nppWood" level="0"/>
685    <field field_ref="nppStem" level="1"/>
686    <field field_ref="nppRoot" level="0"/>
687    <field field_ref="nppGrass" level="1"/>
688    <field field_ref="nppCrop" level="0"/>
689    <field field_ref="nppTree" level="1"/>
690    <field field_ref="nppOther" level="1"/>
691    <field field_ref="nep" level="0"/>
692   </field_group>
693   
694  </file>
695</file_definition>
Note: See TracBrowser for help on using the repository browser.