1 | #!/bin/bash |
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2 | #set -vx |
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3 | # ================================================================================================================================ |
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4 | # compile_orchidee_ol.sh |
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5 | # |
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6 | # CONTACT : orchidee-help _at_ listes.ipsl.fr |
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7 | # |
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8 | # LICENCE : IPSL (2006) |
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9 | # This software is governed by the CeCILL licence see ORCHIDEE/ORCHIDEE_CeCILL.LIC |
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10 | # |
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11 | # DESCRIPTION : This script is used to compile all components needed for the ORCHIDEE offline drivers. The following components |
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12 | # will be compiled: IOIPSL, XIOS and ORCHIDEE. |
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13 | # Default compilation is set up for the machines irene/TGCC, jean-zay/IDRIS, obelix/LSCE and ciclad and |
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14 | # climserv/IPSL. For other machines compiling option needs to be specified for each of the components. |
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15 | # The script first sources a arch.env file, from folder ARCH, containing modules needed for the current machine. |
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16 | # This means that the modules do not need to be sourced before starting the compilation. Output from compilation |
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17 | # are stored in a separate file out_compile_orchidee.date. |
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18 | # For help about the script, use: ./compile_orchidee_ol.sh -h |
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19 | # |
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20 | # $HeadURL$ |
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21 | # $Date$ |
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22 | # $Revision$ |
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23 | # ================================================================================================================================ |
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24 | |
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25 | date |
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26 | |
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27 | #### 1 Set up the compiling options |
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28 | #### Define some directories |
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29 | submitdir=$( pwd ) |
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30 | modipsl=$submitdir/../.. |
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31 | arch_path=$submitdir/ARCH |
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32 | |
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33 | #### Set default options |
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34 | # Optimization mode |
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35 | # optmode=prod/dev/debug |
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36 | optmode=prod |
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37 | |
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38 | # fcm_arch |
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39 | fcm_arch=default |
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40 | |
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41 | # parallel: mpi or seq |
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42 | parallel=mpi |
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43 | |
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44 | export fcm_arch parallel xios |
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45 | full_flag="" |
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46 | full_xios="" |
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47 | full_orch="" |
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48 | |
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49 | # Compile with linking to XIOS: xios=xios (default) |
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50 | # Use argument -without_xios for compilation without linking to XIOS: xios=noxios |
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51 | xios=xios |
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52 | |
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53 | # Compile other executables: if otherexec="-otherexec", then |
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54 | otherexec="" |
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55 | |
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56 | # Default netcdf_lib is used for XIOS but can be change by argument |
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57 | netcdf_lib="" |
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58 | |
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59 | |
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60 | #### Read arguments |
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61 | # Loop over all arguments to modify default set up |
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62 | while (($# > 0)) ; do |
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63 | case $1 in |
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64 | "-h") cat <<end_help |
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65 | ######################################################################## |
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66 | # Usage of the script compile_orchidee_ol.sh |
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67 | # |
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68 | ######################################################################## |
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69 | |
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70 | ./compile_orchidee_ol.sh [Options] |
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71 | |
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72 | Options: |
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73 | [-full]: full recompilation of all components |
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74 | [-full_orch], [-full_xios]: recompile only orchidee or xios component |
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75 | [-arch XXX]: Force to use arch-XXX.fcm and arch-XXX.path files with specific compilation options for current platform. The files must be |
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76 | available in modles/ORCHIDEE/arch, modeles/XIOS/arch and modeles/IOIPSL/arch folders. If the file config/ORCHIDEE_OL/ARCH/arch-XXX.env |
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77 | exist, it'll be sourced in the beginning of this compilation script. |
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78 | [-debug], [-dev], [-prod](default): use compilation options for debug, dev or production mode, only one option can be used |
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79 | [-all_exec]: also compile other exectables than the drivers (testrouting, forcesoil and teststomate) |
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80 | [-without_xios]: no compilation or linking to XIOS. Default compilation is done with XIOS |
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81 | [-parallel seq] / [-parallel mpi](default): compile without MPI for use in sequential mode / with MPI (default). |
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82 | When using [-parallel seq], [-without_xios] must as well be set. |
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83 | [-netcdf_lib_seq]: option to tell XIOS that linking with netcdf4 sequential library will be used instead of default netcdf4 parallel library |
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84 | |
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85 | |
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86 | Example 1: Default compilation of ORCHIDEE with XIOS and IOIPSL |
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87 | ./compile_orchidee_ol.sh |
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88 | |
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89 | Example 2: Compile in debug mode |
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90 | ./compile_orchidee_ol.sh -debug |
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91 | |
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92 | Example 3: Default compilation with full recompilation of all components |
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93 | ./compile_orchidee_ol.sh -full |
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94 | |
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95 | Example 4: No compilation or linking to XIOS |
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96 | ./compile_orchidee_ol.sh -without_xios |
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97 | |
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98 | Example 5: Compilation without MPI for sequential use only. Note that XIOS must be deactivated as well. |
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99 | ./compile_orchidee_ol.sh -parallel seq -without_xios |
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100 | |
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101 | |
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102 | end_help |
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103 | exit;; |
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104 | "-parallel") parallel="$2" ; shift ; shift ;; |
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105 | "-arch") fcm_arch="$2" ; shift ; shift ;; |
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106 | "-without_xios") xios=noxios ; shift ;; |
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107 | "-debug") optmode=debug ; shift ;; |
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108 | "-dev") optmode=dev ; shift ;; |
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109 | "-prod") optmode=prod ; shift ;; |
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110 | "-full") full_flag="-full"; full_xios="--full" ; full_orch="-full" ; shift ;; |
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111 | "-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full |
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112 | "-full_orch") full_orch="-full" ; shift ;; |
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113 | "-all_exec") otherexec="-otherexec" ; shift ;; |
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114 | "-netcdf_lib_seq") netcdf_lib="--netcdf_lib netcdf4_seq"; shift ;; |
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115 | *) echo "unknown option "$1" , exiting..." ; exit |
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116 | esac |
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117 | done |
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118 | |
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119 | |
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120 | # Create text output file |
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121 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` |
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122 | outfile=$submitdir/out_compile_orchidee.$datestr |
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123 | echo > $outfile |
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124 | echo; echo "Text output from compilation will be stored in file out_compile_orchidee.$datestr"; echo |
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125 | |
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126 | |
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127 | echo "Following options are set in current compiling:" >> $outfile |
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128 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile |
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129 | echo " full_flag=$full_flag, full_xios=$full_xios, full_orch=$full_orch" >> $outfile |
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130 | echo >> $outfile |
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131 | |
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132 | if [ $parallel = seq ] && [ $xios = y ] ; then |
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133 | echo "It is not possible to compile ORCHIDEE in sequential mode using XIOS." |
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134 | echo "Option -without_xios must be set if option [-parallel seq] is set" |
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135 | echo "Option -without_xios must be set if option [-parallel seq] is set" >> $outfile |
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136 | exit |
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137 | fi |
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138 | |
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139 | ### Read host dependent default values |
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140 | ### These variables will not be changed if they were set as argument |
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141 | ###./host.sh $host |
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142 | # Later : Following lines should be set in host.sh file |
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143 | # begin host.sh |
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144 | if [ $fcm_arch == default ] ; then |
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145 | # Find out current host and source specific paths and commands for the host |
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146 | case $( hostname -s ) in |
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147 | jean-zay*) |
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148 | fcm_arch=X64_JEANZAY;; |
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149 | irene170|irene171|irene190|irene191|irene192|irene193) |
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150 | fcm_arch=X64_IRENE;; |
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151 | irene172|irene173|irene194|irene195) |
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152 | fcm_arch=X64_IRENE-AMD;; |
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153 | asterix*|obelix*) |
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154 | fcm_arch=ifort_LSCE;; |
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155 | ciclad*|climserv*|loholt*|camelot*|merlin*) |
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156 | fcm_arch=ifort_CICLAD;; |
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157 | spirit*) |
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158 | fcm_arch=ifort_MESOIPSL;; |
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159 | *) |
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160 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
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161 | echo Exit now. |
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162 | exit |
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163 | esac |
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164 | fi |
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165 | |
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166 | echo "The fcm_arch has been changed to: $fcm_arch" >> $outfile |
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167 | |
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168 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
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169 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
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170 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
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171 | echo >> $outfile |
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172 | echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." |
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173 | echo "Note that this new environement might be kept after compilation." |
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174 | echo "If this is the case, source again your personal environment after compilation. " |
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175 | |
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176 | # Make a link to this file, to be used also in config.card |
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177 | rm -f ARCH/arch.env |
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178 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
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179 | |
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180 | # Source the file |
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181 | source ARCH/arch.env >> $outfile 2>&1 |
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182 | echo >> $outfile |
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183 | echo "New module list after sourcing of ARCH/arch.env file:" >> $outfile |
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184 | module list >> $outfile 2>&1 |
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185 | else |
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186 | echo "No specific ARCH/arch-${fcm_arch}.env have been found. No change in environnement will be done." |
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187 | echo "Previous loaded module modules will be used." >> $outfile |
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188 | module list >> $outfile 2>&1 |
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189 | fi |
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190 | |
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191 | |
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192 | #### 2 Do the compilation component by component |
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193 | ## 2.1 Compile ioipsl |
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194 | cd $modipsl/modeles/IOIPSL |
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195 | echo; echo "NOW COMPILE IOIPSL" |
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196 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
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197 | |
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198 | # Check if compilation with fcm is included in IOIPSL |
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199 | if [ ! -f makeioipsl_fcm ] ; then |
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200 | echo "The file makeiopsl_fcm do not exist. Probably this is not the right version of IOIPSL." |
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201 | echo "Version of IOIPSL with fcm compilation is needed to compile with this script. Stop now." |
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202 | exit |
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203 | fi |
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204 | |
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205 | echo ./makeioipsl_fcm -$optmode -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
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206 | ./makeioipsl_fcm -$optmode -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
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207 | # Test if compiling succeded |
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208 | if [[ $? != 0 ]] ; then |
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209 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
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210 | exit |
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211 | fi |
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212 | |
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213 | ## 2.2 Compile xios |
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214 | if [ $xios == xios ] ; then |
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215 | cd $modipsl/modeles/XIOS |
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216 | echo; echo "NOW COMPILE XIOS" |
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217 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
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218 | echo ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile |
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219 | ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1 |
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220 | # Test if compiling succeded |
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221 | if [[ $? != 0 ]] ; then |
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222 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
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223 | exit |
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224 | fi |
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225 | # Move executables to modipsl/bin |
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226 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
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227 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
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228 | else |
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229 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
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230 | exit |
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231 | fi |
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232 | fi |
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233 | |
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234 | |
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235 | ## 2.3 Compile orchidee |
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236 | cd $modipsl/modeles/ORCHIDEE |
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237 | echo; echo "NOW COMPILE ORCHIDEE" |
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238 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE" >> $outfile |
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239 | |
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240 | # Check if the compilation of ORCHIDEE was previsouly interupted prematured. |
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241 | # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm |
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242 | # to ask question and wait for interactivly answer from the user. |
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243 | if [ -f build/fcm.bld.lock ] ; then |
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244 | echo >> $outfile |
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245 | echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile |
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246 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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247 | echo " The file will now be removed. " >> $outfile |
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248 | echo >> $outfile |
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249 | rm -f build/fcm.bld.lock |
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250 | fi |
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251 | |
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252 | echo ./makeorchidee_fcm -j 8 -$xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch -driver $otherexec >> $outfile |
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253 | ./makeorchidee_fcm -j 8 -$xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch -driver $otherexec >> $outfile 2>&1 |
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254 | # Test if compiling finished |
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255 | if [[ $? != 0 ]] ; then |
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256 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
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257 | exit |
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258 | fi |
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259 | |
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260 | # Rename executables to contain $optmode |
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261 | if [ -f $modipsl/bin/orchidee_ol ] ; then mv $modipsl/bin/orchidee_ol $modipsl/bin/orchidee_ol_${optmode} ; fi |
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262 | if [ -f $modipsl/bin/orchideedriver ] ; then mv $modipsl/bin/orchideedriver $modipsl/bin/orchideedriver_${optmode} ; fi |
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263 | if [ -f $modipsl/bin/testrouting ] ; then mv $modipsl/bin/testrouting $modipsl/bin/testrouting_${optmode} ; fi |
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264 | if [ -f $modipsl/bin/forcesoil ] ; then mv $modipsl/bin/forcesoil $modipsl/bin/forcesoil_${optmode} ; fi |
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265 | if [ -f $modipsl/bin/teststomate ] ; then mv $modipsl/bin/teststomate $modipsl/bin/teststomate_${optmode} ; fi |
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266 | |
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267 | |
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268 | |
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269 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
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270 | echo ls -lrt modipsl/bin >> $outfile |
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271 | ls -lrt $modipsl/bin >> $outfile |
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272 | |
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273 | echo; echo "ALL COMPILING FINISHED" ; echo |
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274 | echo "Executables are found in modipsl/bin" |
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275 | echo ls -lrt modipsl/bin |
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276 | ls -lrt $modipsl/bin |
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277 | |
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278 | date |
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279 | |
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280 | exit |
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281 | |
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