source: branches/ORCHIDEE_2_2/ORCHIDEE_OL/ENSEMBLE/Job_Post_FLUXNET @ 7074

Last change on this file since 7074 was 3136, checked in by josefine.ghattas, 8 years ago

Added stop if launched without arguments.
File size: 21.2 KB
Line 
1#!/bin/ksh
2
3# $Date: 2010/06/25 18:48:26 $
4# $Author: ssipsl $
5# $Revision: 1.5 $
6# IPSL (2006)
7#  This software is governed by the CeCILL licence see ORCHIDEE/ORCHIDEE_CeCILL.LIC
8
9#D--------------------------------------------------------------------==
10#D--------------------------------------------------------------------==
11#D-
12#D-                      Job to launch FLUXNET spinup simulations
13#D-
14#D--------------------------------------------------------------------==
15#D--------------------------------------------------------------------==
16#D-
17#                       Job inspired from Sönke Zaehle "site_new.def" job
18#                       #################################################
19
20if [ $# -lt 1 ] ; then
21   echo ""
22   echo "ERROR: Bad usage. You must give the name of the card as argument."
23   echo "Note that this script is only supposed to be used with fluxnet simulation."
24   echo "Do as follow for fluxnet simulation with fluxnet.card:"
25   echo "   ./Job_Post_FLUXNET fluxnet  > out_Job_Post_FLUXNET 2>&1" 
26   echo ""
27   exit
28fi
29
30
31
32SUBMIT_DIR=$( pwd )
33MODIPSL=$(cd ${SUBMIT_DIR}'/../../..';pwd;)
34libIGCM=${MODIPSL}/libIGCM
35
36
37
38# CleanSmallFiles : option to remove small output files before saving
39CleanSmallFiles=yes
40export CleanSmallFiles
41
42# All SubJobs in SPINUP in ONE OR MORE YEARS run (must be used with libIGCM branches/AllPostFred).
43
44
45
46#D--------------------------------------------------------------------==
47#D-                   -1. User modification place
48#D--------------------------------------------------------------------==
49
50#D- Increased verbosity (1, 2, 3)
51#Verbosity=3
52
53#D-
54# --------------------------------------------------------------------
55#D- ! Optionnal features /!\ Use with care !
56# --------------------------------------------------------------------
57
58#D- Low level debug : to bypass lib test checks and stack construction
59#D- Default=true
60DEBUG_debug=false
61
62#D- Set DEBUG_sys to false to disable output calls of function
63#D- Default=true
64#DEBUG_sys=false
65
66#D- Turn in dry run mode ? (0,1,2,3)
67#D- Default=0
68#DRYRUN=3
69# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
70# -------------------------------------------------------------------------------------
71# | DRYRUN=  |  Date computations, | sys_Get    |  Exe    | sys_Put_Out; sys_Put_Rest |
72# |          |  Cp/Exe param files |            |  Chmod  |                           |
73# |          |      Qsub           |            |         |                           |
74# -------------------------------------------------------------------------------------
75# |    0     |       yes           |    yes     |  yes    |      yes                  |
76# -------------------------------------------------------------------------------------
77# |    1     |       yes           |    yes     |  yes    |      no                   |
78# -------------------------------------------------------------------------------------
79# |    2     |       yes           |    yes     |  no     |      no                   |
80# -------------------------------------------------------------------------------------
81# |    3     |       yes           |    no      |  no     |      no                   |
82# -------------------------------------------------------------------------------------
83
84
85#D-
86#D--------------------------------------------------------------------==
87#D-                   0. System Environment
88#D-                      - Define variables for Number of processors
89#D-                      - Define MPI variables
90#D-                      - Define batch scheduler variables
91#D-                      - Source IGCM Library
92#D-                      - Get RESOLution in .resol file (temporary)
93#D--------------------------------------------------------------------==
94
95#D--------------------------------------------------------------------==
96. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
97. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
98. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
99#-------
100. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
101. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
102. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
103. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
104#-------
105( ${DEBUG_debug} ) && IGCM_debug_Check
106( ${DEBUG_debug} ) && IGCM_card_Check
107( ${DEBUG_debug} ) && IGCM_date_Check
108
109#D--------------------------------------------------------------------==
110#D- 0.1 COMMON ENVIRONMENT
111#D-     - Read libIGCM compatibility version in config.card
112#D-     - Read UserChoices section
113#D-     - Read Ensemble section
114#D-     - Read Post section
115#D-     - Define all netcdf output directories
116#D--------------------------------------------------------------------==
117IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card
118
119#D--------------------------------------------------------------------==
120#D- 1. INITIALIZE CONFIGURATION
121#D-    - Simulation configuration
122#D-    - Simulation parameters
123#D-    - Execution parameter
124#D-    - Define input files directory
125#D-    - Read or initialize CumulPeriod
126#D-    - run.card
127#D---------------------------------------------------------------------==
128IGCM_config_Initialize
129
130
131IGCM_sys_Cp -p ensemble.card ref.card
132IGCM_sys_Cp -p $1.card ensemble.card
133
134IGCM_sys_Rm -f ${SUBMIT_DIR}/liste_glost.list
135IGCM_sys_Rm -f ${SUBMIT_DIR}/job_output_
136
137
138#set -vx
139R_BC=${R_IN}/BC
140
141. ${SUBMIT_DIR}/ensemble.ksh
142
143ENSEMBLE_initialize
144
145# Launch ATLAS syncho : we have to wait for the last job !
146
147# ATLAS fix parameters :
148# Atlas Name :
149AtlasCfg=${ensemble_SPINUP_AtlasCfg}
150#atlas_FLUXNET.cfg
151
152# observation_file
153observation_file_path=${ensemble_SPINUP_observation_base_path}/'${Site}_${FYEAR}-${LYEAR}.nc'
154
155
156# old history file
157
158reference_base_path=${ensemble_SPINUP_reference_base_path}
159if [ X${reference_base_path} == X"" ] || [ X${reference_base_path} == XNONE ] ; then
160    flag_reference=0
161    reference_config="_"
162    reference_file_path=NONE
163else
164    flag_reference=1
165    reference_config=${ensemble_SPINUP_reference_config}
166    reference_file_path=${reference_base_path}/${reference_config}/'${Site}${reference_config}HIST/SRF/Output/MO/${Site}${reference_config}HIST_${FYEAR}0101_${LYEAR}1231_1M_sechiba_history.nc'
167
168fi
169export reference_config
170
171
172
173# Modulo for SpinUp years
174Modulo=${ensemble_SPINUP_Modulo}
175
176
177
178# Create RUN_DIR
179echo RUN_DIR_PATH=${RUN_DIR_PATH}
180IGCM_sys_MkdirWork ${RUN_DIR_PATH}
181cp *jnl ${RUN_DIR_PATH}/.
182cp *cfg ${RUN_DIR_PATH}/. 
183cd ${RUN_DIR_PATH}
184
185
186echo  ${ensemble_CONFIG_Groups[*]}
187for group in  ${ensemble_CONFIG_Groups[*]} ; do
188   isite=1
189   index=0
190
191   eval temp=\${ensemble_CONFIG_${group}[*]}
192   set -A group_site -- $temp
193
194   # Number of sites :
195   NumSites=$(( ${#group_site[*]} / NumInfosBySite ))
196
197   R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}
198
199   IGCM_sys_Rm -Rf ${R_SAVE}/fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
200   IGCM_sys_Mkdir ${R_SAVE}/fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
201
202   while [ ${isite} -le ${NumSites} ] ; do
203   
204       site=${group_site[$index]}
205       echo $site
206   
207       TIME_YEAR=${group_site[ $(( index + ColumnLength )) ]}
208       YEAR=${group_site[ $(( index + ColumnYear )) ]}
209   
210       Site=$site
211       echo $YEAR
212       DUREE=${TIME_YEAR}
213       FYEAR=${YEAR}
214       (( LYEAR=FYEAR+DUREE-1 ))
215       echo $site
216       SpinUpJob=${site}${config_UserChoices_JobName}
217       TIME_YEAR=${group_site[ $(( index + ColumnLength )) ]}
218       YEAR=${group_site[ $(( index + ColumnYear )) ]}
219   
220       
221       fichier_with_path=$( \ls -rt ${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}/${SpinUpJob}HIST/SRF/Output/MO/*_sechiba_history.nc )
222
223
224
225       eval observation_file=${observation_file_path}
226       eval reference_file=${reference_file_path}
227
228       echo "reference_config=" ${reference_config}
229       ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 hour ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
230       ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 day ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
231       ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 month ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
232       ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 year ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
233
234       ferret -script taylor_arrow_fluxnet_final_1.jnl \(maint_resp+hetero_resp+growth_resp\) Reco/1800 hour ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
235       ferret -script taylor_arrow_fluxnet_final_1.jnl \(maint_resp+hetero_resp+growth_resp\) Reco/1800 day ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
236       ferret -script taylor_arrow_fluxnet_final_1.jnl \(maint_resp+hetero_resp+growth_resp\) Reco/1800 month ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
237       ferret -script taylor_arrow_fluxnet_final_1.jnl \(maint_resp+hetero_resp+growth_resp\) Reco/1800 year ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
238
239       ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 hour ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
240       ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 day ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
241       ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 month ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
242       ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 year ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
243
244       ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F hour ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
245       ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F day ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
246       ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F month ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
247       ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F year ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
248
249       ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F hour ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
250       ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F day ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
251       ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F month ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
252       ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F year ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
253
254
255       # We test if the END step was moved in SpinUp/SPIN/Output directory.
256       # Then we are sure the last historical SpinUp step has finished (HIST)...
257   
258       # Define name of the END SubJob (FIN) in SpinUp
259       if [ ${ensemble_SPINUP_duree_final} -gt 0 ] ; then
260        BeforeLastJob=${site}${config_UserChoices_JobName}FIN
261       else
262        echo "We must have an \"duree_final\" non zero to get historical run and post-treatment"
263        exit 1
264       fi
265   
266       TIME_YEAR=${group_site[ $(( index + ColumnLength )) ]}
267       YEAR=${group_site[ $(( index + ColumnYear )) ]}
268
269       ATLAS_ARGS=${AtlasCfg}\ ${observation_file}\ ${reference_file}\ ${reference_config}\ ${Modulo}
270       
271       echo "ATLAS_ARGS:" ${ATLAS_ARGS}
272
273   
274       # Launch post-treatment for SPINUP !
275       echo "****"
276       echo "Launch post-treatment for SPINUP for site ${site} !"
277       echo  "call to post_FLUXNET:" ${MODIPSL} ${group} ${site} ${TIME_YEAR} ${YEAR} ${ATLAS_ARGS}
278#       nohup ${SUBMIT_DIR}/post_FLUXNET ${MODIPSL} ${group} ${site} ${TIME_YEAR} ${YEAR} ${ATLAS_ARGS} > ${SUBMIT_DIR}/out_post_${site} 2>&1 &
279       echo ${SUBMIT_DIR}/post_FLUXNET ${MODIPSL} ${group} ${site} ${ATLAS_ARGS} \> ${SUBMIT_DIR}/out_post_${site} >> ${SUBMIT_DIR}/liste_glost.list
280       echo "****"
281   
282      (( isite=isite+1 ))
283      (( index=index+NumInfosBySite ))
284  done
285 
286       
287
288  if [ ${#ensemble_CONFIG_Groups[*]} -ne 1 ] ; then
289     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_hour.csv
290     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_day.csv
291     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_month.csv
292     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_year.csv
293   
294     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_hour.csv
295     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_day.csv
296     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_month.csv
297     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_year.csv
298   
299     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_hour.csv
300     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_day.csv
301     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_month.csv
302     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_year.csv
303   
304     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_hour.csv
305     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_day.csv
306     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_month.csv
307     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_year.csv
308   
309     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_hour.csv
310     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_day.csv
311     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_month.csv
312     cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_year.csv
313   
314  fi
315
316
317  sed -e "s,\(flag_reference_file=\)\(.*\),\1${flag_reference},g" -e "s,\(group=\)\(.*\),\1\"${group}\",g" -e "s,\(config_eval=\)\(.*\),\1\"${config_UserChoices_JobName}\",g" -e "s,\(config_ref=\)\(.*\),\1\"${reference_config}\",g" atlas_FLUXNET_taylor.cfg > atlas_FLUXNET_taylor_${group}.cfg
318   
319   atlas -o fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} atlas_FLUXNET_taylor_${group}.cfg toto
320
321   # Remove small files before saving
322   if [ X$CleanSmallFiles = Xyes ] ; then
323     tmpdir=fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
324     # Remove .info .tex .jnl .stdout .jpg .pdf
325     echo "Remove small files before saving : "
326     sumfilestoremove=$(( $( find $tmpdir -name "*.info" | wc -l ) +  $( find $tmpdir -name "*.jnl" | wc -l ) +  $( find $tmpdir -name "*.stdout" | wc -l ) + $( find $tmpdir -name "*.tex" | wc -l ) + $( ls $tmpdir/*.pdf | wc -l ) ))
327     echo "Following $sumfilestoremove files listed below will be removed:"
328     find ${tmpdir} -name "*.info"
329     find ${tmpdir} -name "*.jnl"
330     find ${tmpdir} -name "*.stdout"
331     find ${tmpdir} -name "*.tex"
332     ls ${tmpdir}/*pdf ${tmpdir}/*/*pdf
333
334     # Now remove them
335     find ${tmpdir} -name "*.info" -print -exec rm -f '{}' \;
336     find ${tmpdir} -name "*.jnl" -print -exec rm -f '{}' \;
337     find ${tmpdir} -name "*.stdout" -print -exec rm -f '{}' \;
338     find ${tmpdir} -name "*.tex" -print -exec rm -f '{}' \;
339#     rm -f ${tmpdir}/*/*pdf
340   else
341     echo "No clean of small files will be done"
342   fi
343
344   # Save files
345   R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}
346   echo "Before IGCM_sys_Put_Dir : destination= ${R_SAVE}"
347
348   IGCM_sys_Put_Dir fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} ${R_SAVE}
349   IGCM_sys_Rm -Rf fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
350
351
352done
353
354nlignes=`less ${SUBMIT_DIR}/liste_glost.list | wc -l `
355nproc=`echo "$nlignes/4+1" | bc`
356sed -e "s/#MSUB\ \-n.*/#MSUB\ \-n\ ${nproc}/" ${SUBMIT_DIR}/job_output > ${SUBMIT_DIR}/job_output_
357echo ccc_mprun ./glost_launch ${SUBMIT_DIR}/liste_glost.list >> ${SUBMIT_DIR}/job_output_
358ccc_msub ${SUBMIT_DIR}/job_output_
359
360
361
362if [ ${#ensemble_CONFIG_Groups[*]} -ne 1 ] ; then
363   group="ALL"
364   IGCM_sys_Rm -Rf ${R_SAVE}/fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
365   
366   sed -e "s,\(flag_reference_file=\)\(.*\),\1${flag_reference},g" -e "s,\(group=\)\(.*\),\1\"${group}\",g" -e "s,\(config_eval=\)\(.*\),\1\"${config_UserChoices_JobName}\",g" -e "s,\(config_ref=\)\(.*\),\1\"${reference_config}\",g" atlas_FLUXNET_taylor.cfg > atlas_FLUXNET_taylor_${group}.cfg
367   
368   atlas -o fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} atlas_FLUXNET_taylor_${group}.cfg toto
369 
370
371   # Remove small files before saving
372   if [ X$CleanSmallFiles = Xyes ] ; then
373     tmpdir=fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
374     # Remove .info .tex .jnl .stdout .jpg .pdf
375     echo "Remove small files before saving : "
376     sumfilestoremove=$(( $( find $tmpdir -name "*.info" | wc -l ) +  $( find $tmpdir -name "*.jnl" | wc -l ) +  $( find $tmpdir -name "*.stdout" | wc -l ) + $( find $tmpdir -name "*.tex" | wc -l ) + $( ls $tmpdir/*.pdf | wc -l ) ))
377     echo "Following $sumfilestoremove files listed below will be removed:"
378     find ${tmpdir} -name "*.info"
379     find ${tmpdir} -name "*.jnl"
380     find ${tmpdir} -name "*.stdout"
381#     find ${tmpdir} -name "*.jpg"
382     find ${tmpdir} -name "*.tex"
383     ls ${tmpdir}/*pdf
384
385     # Now remove them
386#     find ${tmpdir} -name "*.info" -print -exec rm -f '{}' \;
387#     find ${tmpdir} -name "*.jnl" -print -exec rm -f '{}' \;
388#     find ${tmpdir} -name "*.stdout" -print -exec rm -f '{}' \;
389##     find ${tmpdir} -name "*.jpg" -print -exec rm -f '{}' \;
390#     find ${tmpdir} -name "*.tex" -print -exec rm -f '{}' \;
391#     rm -f ${tmpdir}/*/*pdf
392   else
393     echo "No clean of small files will be done"
394   fi
395
396   # Save files
397   R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}
398   IGCM_sys_Put_Dir fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} ${R_SAVE}
399   IGCM_sys_Rm -Rf fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
400fi
401
402cd ${SUBMIT_DIR}
403IGCM_sys_Mv ref.card ensemble.card
404IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
Note: See TracBrowser for help on using the repository browser.