[591] | 1 | #ifndef __XIOS_CGrid__ |
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| 2 | #define __XIOS_CGrid__ |
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[219] | 3 | |
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[591] | 4 | /// XIOS headers /// |
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| 5 | #include "xios_spl.hpp" |
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[219] | 6 | #include "group_factory.hpp" |
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| 7 | |
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| 8 | #include "declare_group.hpp" |
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| 9 | #include "domain.hpp" |
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| 10 | #include "axis.hpp" |
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[887] | 11 | #include "scalar.hpp" |
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[369] | 12 | #include "array_new.hpp" |
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| 13 | #include "attribute_array.hpp" |
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[552] | 14 | #include "distribution_server.hpp" |
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[553] | 15 | #include "client_server_mapping.hpp" |
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[567] | 16 | #include "utils.hpp" |
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[619] | 17 | #include "transformation_enum.hpp" |
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[1918] | 18 | #include "grid_local_connector.hpp" |
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| 19 | #include "grid_elements.hpp" |
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[1930] | 20 | #include "grid_scatterer_connector.hpp" |
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| 21 | #include "grid_gatherer_connector.hpp" |
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[1984] | 22 | #include "transformation_path.hpp" |
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| 23 | #include "filter.hpp" |
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[1999] | 24 | #include "grid_algorithm.hpp" |
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[219] | 25 | |
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[1930] | 26 | |
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[335] | 27 | namespace xios { |
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[509] | 28 | |
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[1564] | 29 | /// ////////////////////// Declarations ////////////////////// /// |
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[219] | 30 | |
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| 31 | class CGridGroup; |
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| 32 | class CGridAttributes; |
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[540] | 33 | class CDomainGroup; |
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| 34 | class CAxisGroup; |
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[887] | 35 | class CScalarGroup; |
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[219] | 36 | class CGrid; |
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[551] | 37 | class CDistributionClient; |
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[552] | 38 | class CDistributionServer; |
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[553] | 39 | class CServerDistributionDescription; |
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| 40 | class CClientServerMapping; |
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[2011] | 41 | |
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[219] | 42 | ///-------------------------------------------------------------- |
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| 43 | |
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| 44 | // Declare/Define CGridAttribute |
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| 45 | BEGIN_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 46 | # include "grid_attribute.conf" |
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| 47 | END_DECLARE_ATTRIBUTE_MAP(CGrid) |
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| 48 | |
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| 49 | ///-------------------------------------------------------------- |
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| 50 | |
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| 51 | class CGrid |
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| 52 | : public CObjectTemplate<CGrid> |
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| 53 | , public CGridAttributes |
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| 54 | { |
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| 55 | /// typedef /// |
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| 56 | typedef CObjectTemplate<CGrid> SuperClass; |
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| 57 | typedef CGridAttributes SuperClassAttribute; |
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| 58 | |
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[1930] | 59 | private: |
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| 60 | |
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| 61 | // define a structure to store elements (CDomain, CAxis, CScalar) using a void* and a type to cast the pointer |
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| 62 | enum EElementType { TYPE_SCALAR, TYPE_AXIS, TYPE_DOMAIN } ; |
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| 63 | struct SElement {void* ptr ; EElementType type ; CScalar* scalar ; CAxis* axis ; CDomain* domain ; } ; |
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| 64 | vector<SElement> elements_ ; |
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| 65 | bool elementsComputed_ = false ; |
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| 66 | /** retrieve the vector of elements as a structure containing a void* and the type of pointer */ |
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| 67 | vector<SElement>& getElements(void) { if (!elementsComputed_) computeElements() ; return elements_ ; } |
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| 68 | void computeElements(void) ; |
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| 69 | /** List order of axis and domain in a grid, if there is a domain, it will take value 2, axis 1, scalar 0 */ |
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| 70 | std::vector<int> order_; |
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| 71 | |
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[676] | 72 | public: |
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[219] | 73 | |
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| 74 | typedef CGridAttributes RelAttributes; |
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| 75 | typedef CGridGroup RelGroup; |
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| 76 | |
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[300] | 77 | enum EEventId |
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| 78 | { |
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[2326] | 79 | EVENT_ID_COLLECTIVE=100, |
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[1973] | 80 | EVENT_ID_ADD_DOMAIN, EVENT_ID_ADD_AXIS, EVENT_ID_ADD_SCALAR, |
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[1943] | 81 | EVENT_ID_SEND_MASK, |
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[2326] | 82 | EVENT_ID_NO_COLLECTIVE=1000, |
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[1943] | 83 | |
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[650] | 84 | }; |
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[509] | 85 | |
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[219] | 86 | /// Constructeurs /// |
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| 87 | CGrid(void); |
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[650] | 88 | explicit CGrid(const StdString& id); |
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| 89 | CGrid(const CGrid& grid); // Not implemented yet. |
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| 90 | CGrid(const CGrid* const grid); // Not implemented yet. |
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[219] | 91 | |
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| 92 | /// Traitements /// |
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[509] | 93 | // void solveReference(void); |
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[219] | 94 | |
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[676] | 95 | void checkEligibilityForCompressedOutput(); |
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[1930] | 96 | |
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[676] | 97 | |
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[509] | 98 | |
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| 99 | void checkMaskIndex(bool doCalculateIndex); |
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| 100 | |
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[650] | 101 | // virtual void toBinary (StdOStream& os) const; |
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| 102 | // virtual void fromBinary(StdIStream& is); |
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[219] | 103 | |
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[676] | 104 | void addRelFileCompressed(const StdString& filename); |
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| 105 | |
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[219] | 106 | /// Tests /// |
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[676] | 107 | bool isCompressible(void) const; |
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| 108 | bool isWrittenCompressed(const StdString& filename) const; |
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[219] | 109 | |
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[676] | 110 | public: |
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[219] | 111 | |
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| 112 | /// Accesseurs /// |
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[1158] | 113 | StdSize getDimension(void); |
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[509] | 114 | |
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[1869] | 115 | StdSize getDataSize(void) ; |
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[219] | 116 | |
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[1875] | 117 | /** |
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| 118 | * Get the local data grid size, ie the size of the compressed grid (inside the workflow) |
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| 119 | * \return The size od the compressed grid |
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| 120 | */ |
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| 121 | StdSize getLocalDataSize(void) ; |
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| 122 | |
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[1973] | 123 | |
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[650] | 124 | virtual void parse(xml::CXMLNode& node); |
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[540] | 125 | |
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[219] | 126 | /// Destructeur /// |
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| 127 | virtual ~CGrid(void); |
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| 128 | |
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[676] | 129 | public: |
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[219] | 130 | |
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| 131 | /// Accesseurs statiques /// |
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| 132 | static StdString GetName(void); |
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| 133 | static StdString GetDefName(void); |
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[509] | 134 | |
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[219] | 135 | static ENodeType GetType(void); |
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| 136 | |
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| 137 | /// Instanciateurs Statiques /// |
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[347] | 138 | static CGrid* createGrid(CDomain* domain); |
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| 139 | static CGrid* createGrid(CDomain* domain, CAxis* axis); |
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[745] | 140 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 141 | const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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[745] | 142 | static CGrid* createGrid(StdString id, const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 143 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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| 144 | static CGrid* createGrid(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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| 145 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder); |
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[2311] | 146 | static CGrid* get(const string& id, bool noError=false) ; //<! return grid pointer using id |
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| 147 | static bool has(const string& id) ; //<! return if grid exist using id |
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[2315] | 148 | static CField* getFieldFromId(const string& id) ; //<! return field id if used in grid reference |
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[745] | 149 | static StdString generateId(const std::vector<CDomain*>& domains, const std::vector<CAxis*>& axis, |
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[887] | 150 | const std::vector<CScalar*>& scalars, const CArray<int,1>& axisDomainOrder = CArray<int,1>()); |
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[823] | 151 | static StdString generateId(const CGrid* gridSrc, const CGrid* gridDest); |
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| 152 | static CGrid* cloneGrid(const StdString& idNewGrid, CGrid* gridSrc); |
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[219] | 153 | |
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[2206] | 154 | CDomain* getAssociatedDomain(const string& domainId, bool noError=false) ; |
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| 155 | CAxis* getAssociatedAxis(const string& axisId, bool noError=false) ; |
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| 156 | CScalar* getAssociatedScalar(const string& scalarId, bool noError=false) ; |
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[1144] | 157 | public: |
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[1869] | 158 | void solveDomainAxisRef(bool areAttributesChecked); |
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| 159 | void checkElementsAttributes(void) ; |
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[219] | 160 | |
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[509] | 161 | void solveDomainRef(bool checkAtt); |
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| 162 | void solveAxisRef(bool checkAtt); |
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[887] | 163 | void solveScalarRef(bool checkAtt); |
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[1869] | 164 | void solveElementsRefInheritance(bool apply = true); |
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[2206] | 165 | bool activateFieldWorkflow(CGarbageCollector& gc) ; |
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[1869] | 166 | // void solveTransformations(); |
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[775] | 167 | void solveDomainAxisBaseRef(); |
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[509] | 168 | |
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[835] | 169 | CDomain* addDomain(const std::string& id=StdString()); |
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| 170 | CAxis* addAxis(const std::string& id=StdString()); |
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[887] | 171 | CScalar* addScalar(const std::string& id=StdString()); |
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[1870] | 172 | |
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| 173 | public: |
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[2397] | 174 | void sendGridToFileServer(CContextClient* client, bool inOut) ; |
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[1870] | 175 | private: |
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| 176 | std::set<CContextClient*> sendGridToFileServer_done_ ; |
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[1875] | 177 | |
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[1870] | 178 | public: |
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[1875] | 179 | void sendGridToCouplerOut(CContextClient* client, const string& fieldId) ; |
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| 180 | private: |
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| 181 | std::set<CContextClient*> sendGridToCouplerOut_done_ ; |
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| 182 | |
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| 183 | public: |
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| 184 | void makeAliasForCoupling(const string& fieldId) ; |
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[2022] | 185 | string getCouplingAlias(const string& fieldId) ; |
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[1875] | 186 | |
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| 187 | public: |
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[1784] | 188 | void sendAddDomain(const std::string& id,CContextClient* contextClient); |
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| 189 | void sendAddAxis(const std::string& id,CContextClient* contextClient); |
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| 190 | void sendAddScalar(const std::string& id,CContextClient* contextClient); |
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[1974] | 191 | |
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[650] | 192 | static void recvAddDomain(CEventServer& event); |
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| 193 | void recvAddDomain(CBufferIn& buffer); |
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| 194 | static void recvAddAxis(CEventServer& event); |
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| 195 | void recvAddAxis(CBufferIn& buffer); |
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[887] | 196 | static void recvAddScalar(CEventServer& event); |
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| 197 | void recvAddScalar(CBufferIn& buffer); |
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[540] | 198 | |
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[650] | 199 | static bool dispatchEvent(CEventServer& event); |
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[1875] | 200 | |
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| 201 | public: |
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[1294] | 202 | void setContextClient(CContextClient* contextClient); |
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| 203 | |
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[1330] | 204 | std::map<int, StdSize> getAttributesBufferSize(CContextClient* client, bool bufferForWriting = false); |
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| 205 | std::map<int, StdSize> getDataBufferSize(CContextClient* client, const std::string& id = "", bool bufferForWriting = false); |
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[540] | 206 | std::vector<StdString> getDomainList(); |
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| 207 | std::vector<StdString> getAxisList(); |
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[887] | 208 | std::vector<StdString> getScalarList(); |
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[540] | 209 | std::vector<CDomain*> getDomains(); |
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| 210 | std::vector<CAxis*> getAxis(); |
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[887] | 211 | std::vector<CScalar*> getScalars(); |
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[943] | 212 | CDomain* getDomain(int domainIndex); |
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| 213 | CAxis* getAxis(int axisIndex); |
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| 214 | CScalar* getScalar(int scalarIndex); |
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[551] | 215 | std::vector<int> getAxisOrder(); |
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[567] | 216 | std::vector<int> getGlobalDimension(); |
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[1236] | 217 | bool isScalarGrid() const; |
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[540] | 218 | |
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[567] | 219 | bool doGridHaveDataToWrite(); |
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[1235] | 220 | bool doGridHaveDataDistributed(CContextClient* client = 0); |
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[567] | 221 | |
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[1984] | 222 | /////////////////////////////////////////// |
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| 223 | //////// TRANSFORMATIONS ///// |
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| 224 | /////////////////////////////////////////// |
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| 225 | public: |
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[1988] | 226 | pair<shared_ptr<CFilter>, shared_ptr<CFilter> > buildTransformationGraph(CGarbageCollector& gc, bool isSource, CGrid* gridSrc, double detectMissingValues, |
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[2144] | 227 | double defaultValue, CGrid*& newGrid, bool graphEnabled=false, CField* field=0) ; |
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[1984] | 228 | private: |
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[2270] | 229 | shared_ptr<CGridAlgorithm> gridAlgorithm_ = nullptr ; |
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[1999] | 230 | public: |
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[2270] | 231 | void setGridAlgorithm(shared_ptr<CGridAlgorithm> gridAlgorithm) {gridAlgorithm_ = gridAlgorithm;} |
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| 232 | shared_ptr<CGridAlgorithm> getGridAlgorithm(void) { return gridAlgorithm_ ;} |
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[1984] | 233 | |
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| 234 | /////////////////////////////////////////// |
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| 235 | public: |
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| 236 | |
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| 237 | size_t getGlobalWrittenSize(void) ; |
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[1875] | 238 | |
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| 239 | bool isCompleted(void) ; |
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| 240 | void setCompleted(void) ; |
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| 241 | void unsetCompleted(void) ; |
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[509] | 242 | |
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[1869] | 243 | |
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[1637] | 244 | bool hasMask(void) const; |
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[1918] | 245 | /** get mask pointer stored in mask_1d, or mask_2d, or..., or mask_7d */ |
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| 246 | CArray<bool,1> mask_ ; |
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| 247 | CArray<bool,1>& getMask(void) ; |
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[509] | 248 | |
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[1973] | 249 | private: |
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[1870] | 250 | /** Client-like distribution calculated based on the knowledge of the entire grid */ |
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| 251 | CDistributionClient* clientDistribution_; |
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| 252 | public: |
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[1869] | 253 | void computeClientDistribution(void) ; |
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[1870] | 254 | private: |
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[1869] | 255 | bool computeClientDistribution_done_ = false ; |
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[1870] | 256 | public: |
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| 257 | CDistributionClient* getClientDistribution(void); |
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[1869] | 258 | |
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[1871] | 259 | private: |
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[540] | 260 | void setVirtualDomainGroup(CDomainGroup* newVDomainGroup); |
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| 261 | void setVirtualAxisGroup(CAxisGroup* newVAxisGroup); |
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[887] | 262 | void setVirtualScalarGroup(CScalarGroup* newVScalarGroup); |
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[567] | 263 | |
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[887] | 264 | void setDomainList(const std::vector<CDomain*> domains = std::vector<CDomain*>()); |
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[540] | 265 | void setAxisList(const std::vector<CAxis*> axis = std::vector<CAxis*>()); |
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[887] | 266 | void setScalarList(const std::vector<CScalar*> scalars = std::vector<CScalar*>()); |
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[540] | 267 | |
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[887] | 268 | CDomainGroup* getVirtualDomainGroup() const; |
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[540] | 269 | CAxisGroup* getVirtualAxisGroup() const; |
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[887] | 270 | CScalarGroup* getVirtualScalarGroup() const; |
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[619] | 271 | |
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[1158] | 272 | int computeGridGlobalDimension(std::vector<int>& globalDim, |
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| 273 | const std::vector<CDomain*> domains, |
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| 274 | const std::vector<CAxis*> axis, |
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| 275 | const std::vector<CScalar*> scalars, |
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| 276 | const CArray<int,1>& axisDomainOrder); |
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| 277 | int getDistributedDimension(); |
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[1794] | 278 | public: |
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| 279 | |
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[1870] | 280 | bool isDataDistributed(void) ; |
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[1236] | 281 | |
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[1870] | 282 | private: |
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[1294] | 283 | bool isChecked; |
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| 284 | bool isDomainAxisChecked; |
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| 285 | bool isIndexSent; |
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| 286 | |
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[540] | 287 | CDomainGroup* vDomainGroup_; |
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| 288 | CAxisGroup* vAxisGroup_; |
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[887] | 289 | CScalarGroup* vScalarGroup_; |
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| 290 | std::vector<std::string> axisList_, domList_, scalarList_; |
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| 291 | bool isAxisListSet, isDomListSet, isScalarListSet; |
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[567] | 292 | |
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[1330] | 293 | /** Map storing local ranks of connected receivers. Key = size of receiver's intracomm. |
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| 294 | * It is calculated in computeConnectedClients(). */ |
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[1263] | 295 | std::map<int, std::vector<int> > connectedServerRank_; |
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[1243] | 296 | |
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[1330] | 297 | /** Map storing the size of data to be send. Key = size of receiver's intracomm |
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| 298 | * It is calculated in computeConnectedClients(). */ |
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[1263] | 299 | std::map<int, std::map<int,size_t> > connectedDataSize_; |
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[1243] | 300 | |
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[1330] | 301 | /** Ranks of connected receivers in case of reading. It is calculated in recvIndex(). */ |
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| 302 | std::vector<int> connectedServerRankRead_; |
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| 303 | |
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| 304 | /** Size of data to be send in case of reading. It is calculated in recvIndex(). */ |
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| 305 | std::map<int,size_t> connectedDataSizeRead_; |
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[1870] | 306 | |
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[676] | 307 | //! True if and only if the data defined on the grid can be outputted in a compressed way |
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| 308 | bool isCompressible_; |
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| 309 | std::set<std::string> relFilesCompressed; |
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[619] | 310 | |
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[1870] | 311 | |
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[620] | 312 | std::vector<int> axisPositionInGrid_; |
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[1870] | 313 | void computeAxisPositionInGrid(void) ; |
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| 314 | bool computeAxisPositionInGrid_done_ = false ; |
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| 315 | std::vector<int>& getAxisPositionInGrid(void) { if (!computeAxisPositionInGrid_done_) computeAxisPositionInGrid() ; return axisPositionInGrid_ ;} |
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| 316 | |
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[1158] | 317 | bool hasDomainAxisBaseRef_; |
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[823] | 318 | std::map<CGrid*, std::pair<bool,StdString> > gridSrc_; |
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[1243] | 319 | |
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[1930] | 320 | ////////////////////////////////////////////////////////////////////////////////////// |
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| 321 | // this part is related to distribution, element definition, views and connectors // |
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| 322 | ////////////////////////////////////////////////////////////////////////////////////// |
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[1984] | 323 | public: |
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[2507] | 324 | CGrid* redistributeGridToWriter(void) ; |
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| 325 | public: |
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[1984] | 326 | CGrid* duplicateSentGrid(void) ; |
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[1943] | 327 | private: |
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| 328 | static void recvMask(CEventServer& event) ; |
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| 329 | void receiveMask(CEventServer& event) ; |
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[1243] | 330 | |
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[1918] | 331 | private: |
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[2267] | 332 | shared_ptr<CGridLocalElements> gridLocalElements_= nullptr ; |
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[1918] | 333 | void computeGridLocalElements(void) ; |
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| 334 | public: |
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[2267] | 335 | shared_ptr<CGridLocalElements> getGridLocalElements(void) { if (gridLocalElements_==nullptr) computeGridLocalElements() ; return gridLocalElements_ ;} |
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[1918] | 336 | |
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| 337 | private: |
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[2267] | 338 | shared_ptr<CGridLocalConnector> modelToWorkflowConnector_ = nullptr ; |
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[1918] | 339 | public: |
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| 340 | void computeModelToWorkflowConnector(void) ; |
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[2267] | 341 | shared_ptr<CGridLocalConnector> getModelToWorkflowConnector(void) { if (modelToWorkflowConnector_==nullptr) computeModelToWorkflowConnector() ; return modelToWorkflowConnector_;} |
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[1918] | 342 | |
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[1930] | 343 | private: |
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[2267] | 344 | shared_ptr<CGridLocalConnector> workflowToModelConnector_ = nullptr; |
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[1930] | 345 | public: |
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| 346 | void computeWorkflowToModelConnector(void) ; |
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[2267] | 347 | shared_ptr<CGridLocalConnector> getWorkflowToModelConnector(void) { if (workflowToModelConnector_==nullptr) computeWorkflowToModelConnector() ; return workflowToModelConnector_;} |
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[1930] | 348 | |
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| 349 | public: //? |
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[2397] | 350 | void distributeGridToServer(CContextClient* client, bool inOut, const string& fieldId=""); |
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[1930] | 351 | |
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[1934] | 352 | |
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[1930] | 353 | private: |
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[2267] | 354 | shared_ptr<CGridLocalConnector> workflowToFullConnector_ = nullptr; |
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[1930] | 355 | public: |
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| 356 | void computeWorkflowToFullConnector(void) ; |
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[2267] | 357 | shared_ptr<CGridLocalConnector> getWorkflowToFullConnector(void) { if (workflowToFullConnector_==nullptr) computeWorkflowToFullConnector() ; return workflowToFullConnector_;} |
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[1930] | 358 | |
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| 359 | private: |
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[2267] | 360 | shared_ptr<CGridLocalConnector> fullToWorkflowConnector_ = nullptr; |
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[1930] | 361 | public: |
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| 362 | void computeFullToWorkflowConnector(void) ; |
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[2267] | 363 | shared_ptr<CGridLocalConnector> getFullToWorkflowConnector(void) { if (fullToWorkflowConnector_==nullptr) computeFullToWorkflowConnector() ; return fullToWorkflowConnector_;} |
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[1930] | 364 | |
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[1934] | 365 | |
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| 366 | |
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[1930] | 367 | private: |
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[2267] | 368 | shared_ptr<CGridGathererConnector> clientFromClientConnector_ = nullptr ; |
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[1930] | 369 | public: |
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[2267] | 370 | shared_ptr<CGridGathererConnector> getClientFromClientConnector(void) { if (clientFromClientConnector_==nullptr) computeClientFromClientConnector() ; return clientFromClientConnector_;} |
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[1930] | 371 | void computeClientFromClientConnector(void) ; |
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| 372 | |
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| 373 | private: |
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[2267] | 374 | map<CContextClient*, shared_ptr<CGridScattererConnector>> clientToClientConnector_ ; |
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[1930] | 375 | public: |
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[2267] | 376 | shared_ptr<CGridScattererConnector> getClientToClientConnector(CContextClient* client) { return clientToClientConnector_[client] ;} // make some test to see if connector exits for the given client |
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[1930] | 377 | |
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| 378 | |
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| 379 | private: |
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[2267] | 380 | map<CContextClient*,shared_ptr<CGridGathererConnector>> clientFromServerConnector_ ; |
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[1930] | 381 | public: |
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[2267] | 382 | shared_ptr<CGridGathererConnector> getClientFromServerConnector(CContextClient* client) { return clientFromServerConnector_[client];} |
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[1930] | 383 | void computeClientFromServerConnector(void) ; |
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| 384 | |
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[1934] | 385 | private: |
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[2267] | 386 | shared_ptr<CGridScattererConnector> serverToClientConnector_=nullptr ; |
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[1934] | 387 | public: |
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[2267] | 388 | shared_ptr<CGridScattererConnector> getServerToClientConnector(void) { if (serverToClientConnector_==nullptr) computeServerToClientConnector() ; return serverToClientConnector_;} |
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[1934] | 389 | void computeServerToClientConnector(void) ; |
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| 390 | private: |
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[2267] | 391 | map<CContextClient*, shared_ptr<CGridScattererConnector>> clientToServerConnector_ ; |
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[1934] | 392 | public: |
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[2267] | 393 | shared_ptr<CGridScattererConnector> getClientToServerConnector(CContextClient* client) { return clientToServerConnector_[client] ;} // make some test to see if connector exits for the given client |
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[1934] | 394 | |
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| 395 | private: |
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[2267] | 396 | shared_ptr<CGridGathererConnector> serverFromClientConnector_ = nullptr ; |
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[1934] | 397 | public: |
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[2267] | 398 | shared_ptr<CGridGathererConnector> getServerFromClientConnector(void) { if (serverFromClientConnector_==nullptr) computeServerFromClientConnector() ; return serverFromClientConnector_;} |
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[1934] | 399 | void computeServerFromClientConnector(void) ; |
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| 400 | |
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[2507] | 401 | private: |
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| 402 | shared_ptr<CGridTransformConnector> redistributeToWriterConnector_ = nullptr ; |
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| 403 | public: |
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| 404 | shared_ptr<CGridTransformConnector> getRedistributeToWriterConnector(CGrid* gridSrc) { if (redistributeToWriterConnector_==nullptr) computeRedistributeToWriterConnector(gridSrc) ; return redistributeToWriterConnector_;} |
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| 405 | void computeRedistributeToWriterConnector(CGrid* gridSrc) ; |
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| 406 | |
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| 407 | |
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[219] | 408 | }; // class CGrid |
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| 409 | |
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| 410 | // Declare/Define CGridGroup and CGridDefinition |
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| 411 | DECLARE_GROUP(CGrid); |
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| 412 | |
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| 413 | ///-------------------------------------------------------------- |
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| 414 | |
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[335] | 415 | } // namespace xios |
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[219] | 416 | |
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[591] | 417 | #endif // __XIOS_CGrid__ |
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