[591] | 1 | #ifndef __XIOS_CDomain__ |
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| 2 | #define __XIOS_CDomain__ |
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[219] | 3 | |
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[591] | 4 | /// XIOS headers /// |
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| 5 | #include "xios_spl.hpp" |
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[219] | 6 | #include "group_factory.hpp" |
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| 7 | |
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| 8 | #include "declare_group.hpp" |
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[540] | 9 | #include "declare_ref_func.hpp" |
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[300] | 10 | #include "event_client.hpp" |
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| 11 | #include "event_server.hpp" |
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| 12 | #include "buffer_in.hpp" |
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[369] | 13 | #include "array_new.hpp" |
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| 14 | #include "attribute_array.hpp" |
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[449] | 15 | #include "attribute_enum.hpp" |
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[631] | 16 | #include "transformation.hpp" |
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| 17 | #include "transformation_enum.hpp" |
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[1984] | 18 | #include "transformation_path.hpp" |
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[1025] | 19 | #include "server_distribution_description.hpp" |
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[878] | 20 | #include "mesh.hpp" |
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[1918] | 21 | #include "element.hpp" |
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| 22 | #include "local_connector.hpp" |
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[1930] | 23 | #include "scatterer_connector.hpp" |
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[1918] | 24 | #include "gatherer_connector.hpp" |
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[1930] | 25 | #include "distribution_type.hpp" |
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[1984] | 26 | #include "generic_algorithm_transformation.hpp" |
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[878] | 27 | |
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[1930] | 28 | |
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[1984] | 29 | namespace xios |
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| 30 | { |
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[509] | 31 | |
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[219] | 32 | /// ////////////////////// Déclarations ////////////////////// /// |
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| 33 | |
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| 34 | class CDomainGroup; |
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| 35 | class CDomainAttributes; |
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| 36 | class CDomain; |
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[878] | 37 | class CFile; |
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[2206] | 38 | class CField ; |
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[219] | 39 | |
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| 40 | ///-------------------------------------------------------------- |
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| 41 | |
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| 42 | // Declare/Define CDomainAttribute |
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| 43 | BEGIN_DECLARE_ATTRIBUTE_MAP(CDomain) |
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| 44 | # include "domain_attribute.conf" |
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[775] | 45 | # include "domain_attribute_private.conf" |
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[219] | 46 | END_DECLARE_ATTRIBUTE_MAP(CDomain) |
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| 47 | |
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| 48 | ///-------------------------------------------------------------- |
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| 49 | |
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| 50 | class CDomain |
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| 51 | : public CObjectTemplate<CDomain> |
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| 52 | , public CDomainAttributes |
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| 53 | { |
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[1158] | 54 | /// typedef /// |
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| 55 | typedef CObjectTemplate<CDomain> SuperClass; |
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| 56 | typedef CDomainAttributes SuperClassAttribute; |
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| 57 | public: |
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[300] | 58 | enum EEventId |
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| 59 | { |
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[2326] | 60 | EVENT_ID_COLLECTIVE=100, |
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| 61 | EVENT_ID_DOMAIN_DISTRIBUTION, EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE, |
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| 62 | EVENT_ID_NO_COLLECTIVE=100, |
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[300] | 63 | } ; |
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[509] | 64 | |
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[676] | 65 | public: |
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[219] | 66 | |
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| 67 | typedef CDomainAttributes RelAttributes; |
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| 68 | typedef CDomainGroup RelGroup; |
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[1984] | 69 | |
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[219] | 70 | /// Constructeurs /// |
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| 71 | CDomain(void); |
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| 72 | explicit CDomain(const StdString & id); |
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| 73 | CDomain(const CDomain & domain); // Not implemented yet. |
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| 74 | CDomain(const CDomain * const domain); // Not implemented yet. |
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[2274] | 75 | static void releaseStaticAllocation(void) ; // release static allocation on heap |
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| 76 | |
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[2203] | 77 | static CDomain* createDomain(); |
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[2206] | 78 | static CDomain* get(const string& id, bool noError=false) ; //<! return domain pointer using id |
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| 79 | static bool has(const string& id) ; //<! return domain pointer using id |
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| 80 | static CField* getFieldFromId(const string& id) ; |
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[219] | 81 | |
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[878] | 82 | CMesh* mesh; |
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[924] | 83 | void assignMesh(const StdString, const int); |
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[878] | 84 | |
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[631] | 85 | virtual void parse(xml::CXMLNode & node); |
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| 86 | |
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[1345] | 87 | void setContextClient(CContextClient* contextClient); |
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| 88 | |
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[219] | 89 | /// Vérifications /// |
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[2632] | 90 | void checkAttributes(bool recheck=false); |
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[1869] | 91 | bool checkAttributes_done_ = false ; |
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| 92 | |
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[2388] | 93 | size_t computeAttributesHash( MPI_Comm comm ); |
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[2389] | 94 | void renameAttributesBeforeWriting(CDomain* writtenDomain=NULL); |
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[1984] | 95 | |
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| 96 | ////////////////////////// |
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| 97 | ///// transformations //// |
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| 98 | ////////////////////////// |
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| 99 | public: |
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| 100 | typedef CTransformation<CDomain>::TransformationMapTypes TransMapTypes; |
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| 101 | private: |
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| 102 | static bool initializeTransformationMap(std::map<StdString, ETranformationType>& m); |
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| 103 | static std::map<StdString, ETranformationType> transformationMapList_; |
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| 104 | static bool dummyTransformationMapList_; |
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| 105 | TransMapTypes transformationMap_; |
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| 106 | |
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| 107 | public: |
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| 108 | CTransformation<CDomain>* addTransformation(ETranformationType transType, const StdString& id=""); |
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| 109 | CTransformation<CDomain>* addTransformation(ETranformationType transType, CTransformation<CDomain>* transformation) ; |
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| 110 | void setTransformations(const TransMapTypes&); |
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| 111 | void duplicateTransformation(CDomain*); |
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| 112 | TransMapTypes getAllTransformations(); |
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| 113 | bool hasTransformation(); |
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| 114 | void solveInheritanceTransformation_old(); // to remove later |
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| 115 | void solveInheritanceTransformation(); |
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| 116 | private: |
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| 117 | bool solveInheritanceTransformation_done_= false ; |
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[2206] | 118 | public: |
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| 119 | bool activateFieldWorkflow(CGarbageCollector& gc) ; |
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[1984] | 120 | private: |
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[2206] | 121 | bool activateFieldWorkflow_done_=false ; |
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| 122 | |
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| 123 | private: |
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[2270] | 124 | shared_ptr<CGenericAlgorithmTransformation> transformationAlgorithm_ = nullptr ; |
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[1984] | 125 | public: |
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[2270] | 126 | void setTransformationAlgorithm(shared_ptr<CGenericAlgorithmTransformation> transformationAlgorithm) { transformationAlgorithm_=transformationAlgorithm ;} |
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| 127 | shared_ptr<CGenericAlgorithmTransformation> getTransformationAlgorithm(void) { return transformationAlgorithm_ ;} |
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[1984] | 128 | private: |
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| 129 | CTransformationPaths transformationPaths_ ; |
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| 130 | public: |
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| 131 | CTransformationPaths getTransformationPaths(void) {return transformationPaths_;} |
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| 132 | void setTransformationPaths(const CTransformationPaths& transformationPaths) { transformationPaths_=transformationPaths ;} |
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| 133 | |
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| 134 | //////////////////////////// |
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| 135 | |
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[687] | 136 | void redistribute(int nbLocalDomain); |
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[631] | 137 | |
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[1158] | 138 | public: |
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| 139 | const std::set<StdString> & getRelFiles(void) const; |
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[219] | 140 | bool IsWritten(const StdString & filename) const; |
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[676] | 141 | bool isWrittenCompressed(const StdString& filename) const; |
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[1144] | 142 | |
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[1330] | 143 | std::map<int, StdSize> getAttributesBufferSize(CContextClient* client, bool bufferForWriting = false); |
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[731] | 144 | |
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[219] | 145 | bool isEmpty(void) const; |
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[594] | 146 | bool isDistributed(void) const; |
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[1956] | 147 | |
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| 148 | public : |
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| 149 | /*! |
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| 150 | \brief return if the domain can be written or not in a compressed way. |
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| 151 | ie if there are some masked or indexed point on the domain. Valid only on server side. |
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| 152 | \return true if domain can be writtedn in a compressed way |
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| 153 | */ |
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| 154 | bool isCompressible(void) { if (!isCompressibleComputed_) computeIsCompressible() ; return isCompressible_ ;} |
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| 155 | private : |
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| 156 | bool isCompressible_ ; /** specify if the domain can be written in a compressed way */ |
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| 157 | bool isCompressibleComputed_=false ; /** Indicate if compressability has been computed*/ |
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| 158 | void computeIsCompressible() ; |
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| 159 | |
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| 160 | public : |
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[1158] | 161 | bool isEqual(CDomain* domain); |
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[1236] | 162 | |
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| 163 | static bool dispatchEvent(CEventServer& event); |
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[1875] | 164 | |
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| 165 | private: |
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| 166 | /** define if the domain is completed or not ie all attributes have been received before in case |
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| 167 | of grid reading from file or coupling */ |
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| 168 | bool isCompleted_=true ; |
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| 169 | public: |
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| 170 | /*! |
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| 171 | \brief Check if a domain is completed |
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| 172 | Before make any domain processing, we must be sure that all domain informations have |
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| 173 | been sent, for exemple when reading a grid in a file or when grid elements are sent by an |
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| 174 | other context (coupling). So all direct reference of the domain (domain_ref) must be also completed |
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| 175 | \return true if domain and domain reference are completed |
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| 176 | */ |
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| 177 | bool isCompleted(void) |
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| 178 | { |
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| 179 | if (hasDirectDomainReference()) if (!getDirectDomainReference()->isCompleted()) return false; |
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| 180 | else return isCompleted_ ; |
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[2282] | 181 | |
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| 182 | MISSING_RETURN( "bool CDomain::isCompleted() " ); |
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| 183 | return true; |
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[1875] | 184 | } |
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| 185 | void setCompleted(void) { isCompleted_=true ; } |
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| 186 | void unsetCompleted(void) { isCompleted_=false ; } |
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[1236] | 187 | |
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[676] | 188 | public: |
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[219] | 189 | /// Mutateur /// |
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| 190 | void addRelFile(const StdString & filename); |
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[1236] | 191 | void addRelFileCompressed(const StdString& filename); |
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| 192 | |
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[821] | 193 | void AllgatherRectilinearLonLat(CArray<double,1>& lon, CArray<double,1>& lat, |
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[809] | 194 | CArray<double,1>& lon_g, CArray<double,1>& lat_g); |
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[821] | 195 | |
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| 196 | void fillInRectilinearBoundLonLat(CArray<double,1>& lon, CArray<double,1>& lat, |
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[809] | 197 | CArray<double,2>& boundsLon, CArray<double,2>& boundsLat); |
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[1158] | 198 | |
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| 199 | void fillInLonLat(); |
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| 200 | bool distributionAttributesHaveValue() const; |
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[611] | 201 | |
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[1215] | 202 | size_t getGlobalWrittenSize() ; |
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[219] | 203 | /// Destructeur /// |
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| 204 | virtual ~CDomain(void); |
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| 205 | |
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| 206 | /// Accesseurs statiques /// |
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| 207 | static StdString GetName(void); |
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| 208 | static StdString GetDefName(void); |
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[509] | 209 | |
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[1236] | 210 | static ENodeType GetType(void); |
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| 211 | |
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| 212 | public: |
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| 213 | CArray<double, 1> lonvalue, latvalue; |
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| 214 | CArray<double, 2> bounds_lonvalue, bounds_latvalue; |
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| 215 | CArray<double, 1> areavalue; |
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[2507] | 216 | int niValue_ ; |
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| 217 | int njValue_ ; |
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| 218 | int ibeginValue_ ; |
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| 219 | int jbeginValue_ ; |
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[1236] | 220 | |
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| 221 | |
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[1311] | 222 | CArray<bool, 1> domainMask; // mask_1d, mask_2d -> domainMask |
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| 223 | CArray<bool, 1> localMask; // domainMask + indexing |
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[384] | 224 | bool isCurvilinear ; |
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[449] | 225 | bool hasBounds ; |
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[611] | 226 | bool hasArea; |
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[665] | 227 | bool hasLonLat; |
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[953] | 228 | bool hasPole ; |
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[2312] | 229 | |
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[1291] | 230 | void computeLocalMask(void) ; |
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[1869] | 231 | |
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| 232 | /** The number of server of a context client. Avoid to re-compute indice computed in a previous computeConnectedClient */ |
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[1974] | 233 | private: std::set<int> listNbServer_ ; |
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[1869] | 234 | |
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[631] | 235 | private: |
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[667] | 236 | void checkDomain(void); |
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| 237 | void checkLocalIDomain(void); |
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| 238 | void checkLocalJDomain(void); |
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| 239 | |
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| 240 | void checkMask(void); |
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| 241 | void checkDomainData(void); |
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| 242 | void checkCompression(void); |
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| 243 | |
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| 244 | void checkBounds(void); |
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| 245 | void checkArea(void); |
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| 246 | void checkLonLat(); |
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[2507] | 247 | void compute2dBox(void) ; |
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[1870] | 248 | |
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| 249 | public: |
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| 250 | void sendDomainToFileServer(CContextClient* client) ; |
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| 251 | private: |
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| 252 | std::set<CContextClient*> sendDomainToFileServer_done_ ; |
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[1943] | 253 | public: |
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[1875] | 254 | void sendDomainToCouplerOut(CContextClient* client, const string& fieldId, int posInGrid) ; |
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| 255 | private: |
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| 256 | std::set<CContextClient*> sendDomainToCouplerOut_done_ ; |
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| 257 | |
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| 258 | public: |
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| 259 | void makeAliasForCoupling(const string& fieldId, int posInGrid) ; |
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[2022] | 260 | string getCouplingAlias(const string& fieldId, int posInGrid) ; |
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[1875] | 261 | private: |
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| 262 | |
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[1129] | 263 | void convertLonLatValue(); |
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[1158] | 264 | void fillInRectilinearLonLat(); |
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| 265 | void fillInCurvilinearLonLat(); |
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| 266 | void fillInUnstructuredLonLat(); |
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[1236] | 267 | void completeLonLatClient(void); |
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[1869] | 268 | |
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| 269 | |
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[1025] | 270 | private: |
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[1345] | 271 | |
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| 272 | /** Clients that have to send a domain. There can be multiple clients in case of secondary server, otherwise only one client. */ |
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[1353] | 273 | std::list<CContextClient*> clients; |
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| 274 | std::set<CContextClient*> clientsSet; |
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[1345] | 275 | |
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[1974] | 276 | bool isChecked ; |
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[676] | 277 | std::set<StdString> relFiles, relFilesCompressed; |
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[1847] | 278 | |
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| 279 | /** only on client side : Global index of each client sent to server: map<serverSize, map<serverRank, indexes>> |
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| 280 | indSrv_[nbServers] --> first map is related to the server distribution (ie associated with the contextClient) |
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| 281 | indSrv_[nbServers][server_rank] -> array of global index sent to the server of rank "server_rank" |
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| 282 | indSrv_[nbServers][server_rank](ind) --> global index on server of the local element "ind" sent (for lon, lat, mask, etc...) |
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| 283 | */ |
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[1542] | 284 | std::map<int, std::unordered_map<int, vector<size_t> > > indSrv_; |
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[1847] | 285 | |
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[1337] | 286 | std::map<int, std::vector<int> > connectedServerRank_; |
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[1236] | 287 | |
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[715] | 288 | bool isRedistributed_; |
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[657] | 289 | bool isUnstructed_; |
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[1847] | 290 | |
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[953] | 291 | |
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[1930] | 292 | ////////////////////////////////////////////////////////////////////////////////////// |
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| 293 | // this part is related to distribution, element definition, views and connectors // |
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| 294 | ////////////////////////////////////////////////////////////////////////////////////// |
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[1918] | 295 | private: |
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[2267] | 296 | shared_ptr<CLocalElement> localElement_ = nullptr ; |
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[1918] | 297 | void initializeLocalElement(void) ; |
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| 298 | |
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| 299 | public: |
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[2267] | 300 | shared_ptr<CLocalElement> getLocalElement(void) { if (localElement_==nullptr) initializeLocalElement() ; return localElement_ ; } |
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| 301 | shared_ptr<CLocalView> getLocalView(CElementView::type type) { return getLocalElement()->getView(type) ;} |
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[1918] | 302 | |
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| 303 | private: |
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| 304 | void addFullView(void) ; |
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| 305 | void addWorkflowView(void) ; |
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| 306 | void addModelView(void) ; |
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| 307 | |
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| 308 | private: |
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[2267] | 309 | shared_ptr<CLocalConnector> modelToWorkflowConnector_ ; |
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[1918] | 310 | void computeModelToWorkflowConnector(void) ; |
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[1930] | 311 | public: |
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[2267] | 312 | shared_ptr<CLocalConnector> getModelToWorkflowConnector(void) { if (modelToWorkflowConnector_==nullptr) computeModelToWorkflowConnector() ; return modelToWorkflowConnector_ ;} |
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[1930] | 313 | |
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| 314 | public: |
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| 315 | void computeRemoteElement(CContextClient* client, EDistributionType) ; |
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[2397] | 316 | void distributeToServer(CContextClient* client, bool inOut, std::map<int, CArray<size_t,1>>& globalIndexOut, std::map<int, CArray<size_t,1>>& globalIndexIn, |
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[2304] | 317 | shared_ptr<CScattererConnector> &scattererConnector, const string& domainId="") ; |
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[1930] | 318 | |
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| 319 | static void recvDomainDistribution(CEventServer& event) ; |
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| 320 | void receivedDomainDistribution(CEventServer& event, int phasis) ; |
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| 321 | |
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[2267] | 322 | void sendDistributedAttributes(CContextClient* client, shared_ptr<CScattererConnector> scaterrerConnector, const string& domainId) ; |
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[1930] | 323 | static void recvDistributedAttributes(CEventServer& event) ; |
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| 324 | void recvDistributedAttributes(CEventServer& event, const string& type) ; |
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[1943] | 325 | void setServerMask(CArray<bool,1>& serverMask, CContextClient* client) ; |
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| 326 | |
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[1930] | 327 | private: |
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[2267] | 328 | map<CContextClient*, shared_ptr<CDistributedElement>> remoteElement_ ; |
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[1930] | 329 | public: |
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[2267] | 330 | shared_ptr<CDistributedElement> getRemoteElement(CContextClient* client) {return remoteElement_[client] ;} |
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[1930] | 331 | private: |
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[2267] | 332 | map<CContextClient*, shared_ptr<CScattererConnector>> clientToServerConnector_ ; |
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[1930] | 333 | public: |
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[2267] | 334 | shared_ptr<CScattererConnector> getClientToServerConnector(CContextClient* client) { return clientToServerConnector_[client] ;} |
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[1934] | 335 | |
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[1930] | 336 | private: |
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[2267] | 337 | shared_ptr<CGathererConnector> gathererConnector_ ; |
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[1943] | 338 | public: |
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[2267] | 339 | shared_ptr<CGathererConnector> getGathererConnector(void) { return gathererConnector_ ;} |
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[1943] | 340 | private: |
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[2267] | 341 | shared_ptr<CGathererConnector> serverFromClientConnector_ ; |
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| 342 | shared_ptr<CDistributedElement> elementFrom_ ; |
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[1930] | 343 | public: |
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[2267] | 344 | shared_ptr<CGathererConnector> getServerFromClientConnector(void) { return serverFromClientConnector_ ;} |
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[1918] | 345 | |
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[1934] | 346 | private: |
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[2304] | 347 | shared_ptr<CScattererConnector> serverToClientConnector_ = nullptr ; |
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| 348 | shared_ptr<CDistributedElement> elementTo_ ; |
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[1934] | 349 | public: |
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[2267] | 350 | shared_ptr<CScattererConnector> getServerToClientConnector(void) { return serverToClientConnector_ ;} |
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[1934] | 351 | |
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| 352 | private: |
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[2267] | 353 | map<CContextClient*,shared_ptr<CGathererConnector>> clientFromServerConnector_ ; |
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[1934] | 354 | public: |
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[2267] | 355 | shared_ptr<CGathererConnector> getClientFromServerConnector(CContextClient* client) { return clientFromServerConnector_[client] ;} |
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[1918] | 356 | |
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[1930] | 357 | |
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[540] | 358 | DECLARE_REF_FUNC(Domain,domain) |
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| 359 | |
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[219] | 360 | }; // class CDomain |
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| 361 | |
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| 362 | ///-------------------------------------------------------------- |
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| 363 | |
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| 364 | // Declare/Define CDomainGroup and CDomainDefinition |
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| 365 | DECLARE_GROUP(CDomain); |
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| 366 | |
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| 367 | ///-------------------------------------------------------------- |
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| 368 | |
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[335] | 369 | } // namespace xios |
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[219] | 370 | |
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[878] | 371 | #endif //__XIOS_CDomain__ |
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