1 | #include "domain.hpp" |
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2 | #include "attribute_template.hpp" |
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3 | #include "object_template.hpp" |
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4 | #include "group_template.hpp" |
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5 | |
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6 | #include "xios_spl.hpp" |
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7 | #include "event_client.hpp" |
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8 | #include "event_server.hpp" |
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9 | #include "buffer_in.hpp" |
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10 | #include "message.hpp" |
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11 | #include "type.hpp" |
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12 | #include "context.hpp" |
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13 | #include "context_client.hpp" |
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14 | #include "context_server.hpp" |
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15 | #include "array_new.hpp" |
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16 | #include "distribution_client.hpp" |
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17 | #include "server_distribution_description.hpp" |
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18 | #include "client_server_mapping_distributed.hpp" |
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19 | #include "local_connector.hpp" |
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20 | #include "grid_local_connector.hpp" |
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21 | #include "remote_connector.hpp" |
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22 | #include "gatherer_connector.hpp" |
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23 | #include "scatterer_connector.hpp" |
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24 | #include "grid_scatterer_connector.hpp" |
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25 | #include "grid_gatherer_connector.hpp" |
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26 | #include "transformation_path.hpp" |
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27 | #include "grid_transformation_factory_impl.hpp" |
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28 | |
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29 | #include <algorithm> |
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30 | #include <regex> |
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31 | |
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32 | |
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33 | namespace xios { |
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34 | |
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35 | /// ////////////////////// Définitions ////////////////////// /// |
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36 | |
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37 | CDomain::CDomain(void) |
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38 | : CObjectTemplate<CDomain>(), CDomainAttributes() |
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39 | , isChecked(false), relFiles(), indSrv_(), connectedServerRank_() |
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40 | , hasBounds(false), hasArea(false), isCompressible_(false), isUnstructed_(false) |
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41 | , hasLonLat(false) |
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42 | , isRedistributed_(false), hasPole(false) |
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43 | , lonvalue(), latvalue(), bounds_lonvalue(), bounds_latvalue() |
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44 | , clients() |
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45 | { |
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46 | } |
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47 | |
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48 | CDomain::CDomain(const StdString & id) |
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49 | : CObjectTemplate<CDomain>(id), CDomainAttributes() |
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50 | , isChecked(false), relFiles(), indSrv_(), connectedServerRank_() |
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51 | , hasBounds(false), hasArea(false), isCompressible_(false), isUnstructed_(false) |
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52 | , hasLonLat(false) |
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53 | , isRedistributed_(false), hasPole(false) |
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54 | , lonvalue(), latvalue(), bounds_lonvalue(), bounds_latvalue() |
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55 | , clients() |
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56 | { |
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57 | } |
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58 | |
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59 | CDomain::~CDomain(void) |
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60 | { |
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61 | } |
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62 | |
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63 | void CDomain::releaseStaticAllocation(void) |
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64 | { |
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65 | transformationMapList_.clear() ; |
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66 | CTransformation<CDomain>::unregisterAllTransformations() ; |
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67 | CGridTransformationFactory<CDomain>::unregisterAllTransformations() ; |
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68 | } |
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69 | ///--------------------------------------------------------------- |
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70 | |
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71 | void CDomain::assignMesh(const StdString meshName, const int nvertex) |
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72 | TRY |
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73 | { |
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74 | mesh = CMesh::getMesh(meshName, nvertex); |
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75 | } |
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76 | CATCH_DUMP_ATTR |
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77 | |
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78 | CDomain* CDomain::createDomain() |
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79 | TRY |
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80 | { |
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81 | CDomain* domain = CDomainGroup::get("domain_definition")->createChild(); |
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82 | return domain; |
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83 | } |
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84 | CATCH |
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85 | |
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86 | CDomain* CDomain::get(const string& id, bool noError) |
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87 | { |
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88 | const regex r("::"); |
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89 | smatch m; |
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90 | if (regex_search(id, m, r)) |
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91 | { |
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92 | if (m.size()!=1) ERROR("CDomain* CDomain::get(string& id)", <<" id = "<<id<< " -> bad format id, separator :: append more than one time"); |
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93 | string fieldId=m.prefix() ; |
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94 | if (fieldId.empty()) ERROR("CDomain* CDomain::get(string& id)", <<" id = "<<id<< " -> bad format id, field name is empty"); |
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95 | string suffix=m.suffix() ; |
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96 | if (!CField::has(fieldId)) |
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97 | if (noError) return nullptr ; |
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98 | else ERROR("CDomain* CDomain::get(string& id)", <<" id = "<<id<< " -> field Id : < "<<fieldId<<" > doesn't exist"); |
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99 | CField* field=CField::get(fieldId) ; |
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100 | return field->getAssociatedDomain(suffix, noError) ; |
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101 | } |
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102 | else |
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103 | { |
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104 | if (noError) if(!CObjectFactory::HasObject<CDomain>(id)) return nullptr ; |
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105 | return CObjectFactory::GetObject<CDomain>(id).get(); |
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106 | } |
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107 | } |
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108 | |
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109 | bool CDomain::has(const string& id) |
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110 | { |
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111 | if (CDomain::get(id,true)==nullptr) return false ; |
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112 | else return true ; |
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113 | } |
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114 | |
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115 | CField* CDomain::getFieldFromId(const string& id) |
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116 | { |
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117 | const regex r("::"); |
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118 | smatch m; |
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119 | if (regex_search(id, m, r)) |
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120 | { |
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121 | if (m.size()!=1) ERROR("CField* CDomain::getFieldFromId(const string& id)", <<" id = "<<id<< " -> bad format id, separator :: append more than one time"); |
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122 | string fieldId=m.prefix() ; |
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123 | if (fieldId.empty()) ERROR("CField* CDomain::getFieldFromId(const string& id)", <<" id = "<<id<< " -> bad format id, field name is empty"); |
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124 | string suffix=m.suffix() ; |
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125 | CField* field=CField::get(fieldId) ; |
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126 | return field ; |
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127 | } |
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128 | else return nullptr; |
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129 | } |
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130 | |
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131 | const std::set<StdString> & CDomain::getRelFiles(void) const |
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132 | TRY |
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133 | { |
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134 | return (this->relFiles); |
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135 | } |
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136 | CATCH |
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137 | |
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138 | //---------------------------------------------------------------- |
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139 | |
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140 | /*! |
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141 | * Compute the minimum buffer size required to send the attributes to the server(s). |
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142 | * |
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143 | * \return A map associating the server rank with its minimum buffer size. |
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144 | */ |
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145 | std::map<int, StdSize> CDomain::getAttributesBufferSize(CContextClient* client, bool bufferForWriting /*= false*/) |
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146 | TRY |
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147 | { |
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148 | |
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149 | std::map<int, StdSize> attributesSizes = getMinimumBufferSizeForAttributes(client); |
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150 | |
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151 | if (client->isServerLeader()) |
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152 | { |
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153 | // size estimation for sendDistributionAttribut |
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154 | size_t size = 11 * sizeof(size_t); |
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155 | |
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156 | const std::list<int>& ranks = client->getRanksServerLeader(); |
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157 | for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank) |
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158 | { |
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159 | if (size > attributesSizes[*itRank]) |
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160 | attributesSizes[*itRank] = size; |
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161 | } |
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162 | } |
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163 | |
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164 | std::unordered_map<int, vector<size_t> >::const_iterator itIndexEnd = indSrv_[client->getRemoteSize()].end(); |
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165 | // std::map<int, std::vector<int> >::const_iterator itWrittenIndexEnd = indWrittenSrv_.end(); |
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166 | for (size_t k = 0; k < connectedServerRank_[client->getRemoteSize()].size(); ++k) |
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167 | { |
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168 | int rank = connectedServerRank_[client->getRemoteSize()][k]; |
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169 | std::unordered_map<int, std::vector<size_t> >::const_iterator it = indSrv_[client->getRemoteSize()].find(rank); |
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170 | size_t idxCount = (it != itIndexEnd) ? it->second.size() : 0; |
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171 | |
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172 | // size estimation for sendIndex (and sendArea which is always smaller or equal) |
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173 | size_t sizeIndexEvent = 2 * sizeof(size_t) + 2 * CArray<int,1>::size(idxCount); |
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174 | |
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175 | // size estimation for sendLonLat |
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176 | size_t sizeLonLatEvent = CArray<double,1>::size(idxCount); |
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177 | if (hasBounds) |
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178 | sizeLonLatEvent += CArray<double,2>::size(nvertex * idxCount); |
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179 | |
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180 | size_t size = CEventClient::headerSize + getId().size() + sizeof(size_t) + std::max(sizeIndexEvent, sizeLonLatEvent); |
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181 | if (size > attributesSizes[rank]) |
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182 | attributesSizes[rank] = size; |
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183 | } |
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184 | |
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185 | return attributesSizes; |
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186 | } |
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187 | CATCH_DUMP_ATTR |
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188 | |
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189 | //---------------------------------------------------------------- |
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190 | |
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191 | bool CDomain::isEmpty(void) const |
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192 | TRY |
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193 | { |
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194 | return ((this->i_index.isEmpty()) || (0 == this->i_index.numElements())); |
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195 | } |
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196 | CATCH |
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197 | |
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198 | //---------------------------------------------------------------- |
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199 | |
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200 | bool CDomain::IsWritten(const StdString & filename) const |
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201 | TRY |
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202 | { |
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203 | return (this->relFiles.find(filename) != this->relFiles.end()); |
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204 | } |
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205 | CATCH |
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206 | |
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207 | bool CDomain::isWrittenCompressed(const StdString& filename) const |
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208 | TRY |
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209 | { |
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210 | return (this->relFilesCompressed.find(filename) != this->relFilesCompressed.end()); |
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211 | } |
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212 | CATCH |
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213 | |
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214 | //---------------------------------------------------------------- |
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215 | |
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216 | bool CDomain::isDistributed(void) const |
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217 | TRY |
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218 | { |
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219 | bool distributed = !((!ni.isEmpty() && (ni == ni_glo) && !nj.isEmpty() && (nj == nj_glo)) || |
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220 | (!i_index.isEmpty() && i_index.numElements() == ni_glo*nj_glo)); |
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221 | bool distributed_glo ; |
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222 | distributed |= (1 == CContext::getCurrent()->intraCommSize_); |
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223 | |
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224 | return distributed; |
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225 | } |
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226 | CATCH |
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227 | |
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228 | //---------------------------------------------------------------- |
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229 | |
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230 | /*! |
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231 | * Compute if the domain can be ouput in a compressed way. |
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232 | * In this case the workflow view on server side must be the same |
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233 | * than the full view for all context rank. The result is stored on |
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234 | * internal isCompressible_ attribute. |
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235 | */ |
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236 | void CDomain::computeIsCompressible(void) |
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237 | TRY |
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238 | { |
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239 | // mesh is compressible contains some masked or indexed value, ie if full view is different of workflow view. |
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240 | // But now assume that the size of the 2 view must be equal for everybody. True on server side |
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241 | int isSameView = getLocalView(CElementView::FULL)->getSize() == getLocalView(CElementView::WORKFLOW)->getSize(); |
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242 | MPI_Allreduce(MPI_IN_PLACE, &isSameView, 1, MPI_INT, MPI_LAND, CContext::getCurrent()->getIntraComm()) ; |
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243 | if (isSameView) isCompressible_ = false ; |
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244 | else isCompressible_ = true ; |
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245 | isCompressibleComputed_=true ; |
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246 | } |
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247 | CATCH |
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248 | |
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249 | void CDomain::addRelFile(const StdString & filename) |
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250 | TRY |
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251 | { |
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252 | this->relFiles.insert(filename); |
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253 | } |
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254 | CATCH_DUMP_ATTR |
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255 | |
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256 | void CDomain::addRelFileCompressed(const StdString& filename) |
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257 | TRY |
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258 | { |
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259 | this->relFilesCompressed.insert(filename); |
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260 | } |
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261 | CATCH_DUMP_ATTR |
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262 | |
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263 | StdString CDomain::GetName(void) { return (StdString("domain")); } |
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264 | StdString CDomain::GetDefName(void){ return (CDomain::GetName()); } |
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265 | ENodeType CDomain::GetType(void) { return (eDomain); } |
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266 | |
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267 | //---------------------------------------------------------------- |
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268 | |
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269 | /*! |
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270 | Verify if all distribution information of a domain are available |
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271 | This checking verifies the definition of distribution attributes (ni, nj, ibegin, jbegin) |
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272 | */ |
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273 | bool CDomain::distributionAttributesHaveValue() const |
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274 | TRY |
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275 | { |
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276 | bool hasValues = true; |
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277 | |
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278 | if (ni.isEmpty() && ibegin.isEmpty() && i_index.isEmpty()) |
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279 | { |
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280 | hasValues = false; |
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281 | return hasValues; |
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282 | } |
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283 | |
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284 | return hasValues; |
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285 | } |
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286 | CATCH |
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287 | |
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288 | /*! |
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289 | Redistribute RECTILINEAR or CURVILINEAR domain with a number of local domains. |
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290 | All attributes ni,nj,ibegin,jbegin (if defined) will be rewritten |
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291 | The optional attributes lonvalue, latvalue will be added. Because this function only serves (for now) |
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292 | for interpolation from unstructured domain to rectilinear one, range of latvalue is 0-360 and lonvalue is -90 - +90 |
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293 | \param [in] nbLocalDomain number of local domain on the domain destination |
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294 | */ |
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295 | |
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296 | void CDomain::redistribute(int nbLocalDomain) |
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297 | TRY |
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298 | { |
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299 | if (this->isRedistributed_) return; |
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300 | |
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301 | this->isRedistributed_ = true; |
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302 | CContext* context = CContext::getCurrent(); |
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303 | // For now the assumption is that secondary server pools consist of the same number of procs. |
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304 | // CHANGE the line below if the assumption changes. |
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305 | |
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306 | int rankClient = context->intraCommRank_; |
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307 | int rankOnDomain = rankClient%nbLocalDomain; |
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308 | |
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309 | if (ni_glo.isEmpty() || ni_glo <= 0 ) |
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310 | { |
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311 | ERROR("CDomain::redistribute(int nbLocalDomain)", |
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312 | << "[ Id = " << this->getId() << " ] " |
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313 | << "The global domain is badly defined," |
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314 | << " check the \'ni_glo\' value !") |
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315 | } |
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316 | |
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317 | if (nj_glo.isEmpty() || nj_glo <= 0 ) |
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318 | { |
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319 | ERROR("CDomain::redistribute(int nbLocalDomain)", |
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320 | << "[ Id = " << this->getId() << " ] " |
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321 | << "The global domain is badly defined," |
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322 | << " check the \'nj_glo\' value !") |
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323 | } |
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324 | |
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325 | if ((type_attr::rectilinear == type) || (type_attr::curvilinear == type)) |
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326 | { |
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327 | int globalDomainSize = ni_glo * nj_glo; |
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328 | if (globalDomainSize <= nbLocalDomain) |
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329 | { |
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330 | for (int idx = 0; idx < nbLocalDomain; ++idx) |
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331 | { |
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332 | if (rankOnDomain < globalDomainSize) |
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333 | { |
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334 | int iIdx = rankOnDomain % ni_glo; |
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335 | int jIdx = rankOnDomain / ni_glo; |
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336 | ibegin.setValue(iIdx); jbegin.setValue(jIdx); |
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337 | ni.setValue(1); nj.setValue(1); |
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338 | } |
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339 | else |
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340 | { |
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341 | ibegin.setValue(0); jbegin.setValue(0); |
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342 | ni.setValue(0); nj.setValue(0); |
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343 | } |
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344 | } |
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345 | } |
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346 | else |
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347 | { |
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348 | float njGlo = nj_glo.getValue(); |
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349 | float niGlo = ni_glo.getValue(); |
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350 | int nbProcOnX, nbProcOnY, range; |
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351 | |
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352 | // Compute (approximately) number of segment on x and y axis |
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353 | float yOverXRatio = njGlo/niGlo; |
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354 | |
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355 | nbProcOnX = std::ceil(std::sqrt(nbLocalDomain/yOverXRatio)); |
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356 | nbProcOnY = std::ceil(((float)nbLocalDomain)/nbProcOnX); |
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357 | |
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358 | // Simple distribution: Sweep from top to bottom, left to right |
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359 | // Calculate local begin on x |
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360 | std::vector<int> ibeginVec(nbProcOnX,0), jbeginVec(nbProcOnY,0); |
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361 | std::vector<int> niVec(nbProcOnX), njVec(nbProcOnY); |
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362 | for (int i = 1; i < nbProcOnX; ++i) |
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363 | { |
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364 | range = ni_glo / nbProcOnX; |
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365 | if (i < (ni_glo%nbProcOnX)) ++range; |
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366 | niVec[i-1] = range; |
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367 | ibeginVec[i] = ibeginVec[i-1] + niVec[i-1]; |
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368 | } |
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369 | niVec[nbProcOnX-1] = ni_glo - ibeginVec[nbProcOnX-1]; |
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370 | |
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371 | // Calculate local begin on y |
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372 | for (int j = 1; j < nbProcOnY; ++j) |
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373 | { |
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374 | range = nj_glo / nbProcOnY; |
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375 | if (j < (nj_glo%nbProcOnY)) ++range; |
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376 | njVec[j-1] = range; |
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377 | jbeginVec[j] = jbeginVec[j-1] + njVec[j-1]; |
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378 | } |
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379 | njVec[nbProcOnY-1] = nj_glo - jbeginVec[nbProcOnY-1]; |
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380 | |
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381 | // Now assign value to ni, ibegin, nj, jbegin |
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382 | int iIdx = rankOnDomain % nbProcOnX; |
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383 | int jIdx = rankOnDomain / nbProcOnX; |
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384 | |
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385 | if (rankOnDomain != (nbLocalDomain-1)) |
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386 | { |
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387 | ibegin.setValue(ibeginVec[iIdx]); |
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388 | jbegin.setValue(jbeginVec[jIdx]); |
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389 | nj.setValue(njVec[jIdx]); |
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390 | ni.setValue(niVec[iIdx]); |
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391 | } |
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392 | else // just merge all the remaining rectangle into the last one |
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393 | { |
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394 | ibegin.setValue(ibeginVec[iIdx]); |
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395 | jbegin.setValue(jbeginVec[jIdx]); |
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396 | nj.setValue(njVec[jIdx]); |
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397 | ni.setValue(ni_glo - ibeginVec[iIdx]); |
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398 | } |
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399 | } |
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400 | } |
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401 | else // unstructured domain |
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402 | { |
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403 | if (this->i_index.isEmpty()) |
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404 | { |
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405 | int globalDomainSize = ni_glo * nj_glo; |
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406 | if (globalDomainSize <= nbLocalDomain) |
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407 | { |
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408 | for (int idx = 0; idx < nbLocalDomain; ++idx) |
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409 | { |
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410 | if (rankOnDomain < globalDomainSize) |
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411 | { |
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412 | int iIdx = rankOnDomain % ni_glo; |
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413 | int jIdx = rankOnDomain / ni_glo; |
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414 | ibegin.setValue(iIdx); jbegin.setValue(jIdx); |
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415 | ni.setValue(1); nj.setValue(1); |
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416 | } |
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417 | else |
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418 | { |
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419 | ibegin.setValue(0); jbegin.setValue(0); |
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420 | ni.setValue(0); nj.setValue(0); |
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421 | } |
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422 | } |
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423 | } |
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424 | else |
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425 | { |
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426 | float njGlo = nj_glo.getValue(); |
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427 | float niGlo = ni_glo.getValue(); |
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428 | std::vector<int> ibeginVec(nbLocalDomain,0); |
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429 | std::vector<int> niVec(nbLocalDomain); |
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430 | for (int i = 1; i < nbLocalDomain; ++i) |
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431 | { |
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432 | int range = ni_glo / nbLocalDomain; |
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433 | if (i < (ni_glo%nbLocalDomain)) ++range; |
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434 | niVec[i-1] = range; |
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435 | ibeginVec[i] = ibeginVec[i-1] + niVec[i-1]; |
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436 | } |
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437 | niVec[nbLocalDomain-1] = ni_glo - ibeginVec[nbLocalDomain-1]; |
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438 | |
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439 | int iIdx = rankOnDomain % nbLocalDomain; |
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440 | ibegin.setValue(ibeginVec[iIdx]); |
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441 | jbegin.setValue(0); |
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442 | ni.setValue(niVec[iIdx]); |
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443 | nj.setValue(1); |
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444 | } |
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445 | |
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446 | i_index.resize(ni); |
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447 | for(int idx = 0; idx < ni; ++idx) i_index(idx)=ibegin+idx; |
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448 | } |
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449 | else |
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450 | { |
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451 | ibegin.setValue(this->i_index(0)); |
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452 | jbegin.setValue(0); |
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453 | ni.setValue(this->i_index.numElements()); |
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454 | nj.setValue(1); |
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455 | } |
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456 | } |
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457 | |
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458 | checkDomain(); |
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459 | } |
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460 | CATCH_DUMP_ATTR |
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461 | |
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462 | /*! |
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463 | Fill in longitude and latitude whose values are read from file |
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464 | */ |
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465 | void CDomain::fillInLonLat() |
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466 | TRY |
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467 | { |
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468 | switch (type) |
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469 | { |
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470 | case type_attr::rectilinear: |
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471 | fillInRectilinearLonLat(); |
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472 | break; |
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473 | case type_attr::curvilinear: |
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474 | fillInCurvilinearLonLat(); |
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475 | break; |
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476 | case type_attr::unstructured: |
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477 | fillInUnstructuredLonLat(); |
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478 | break; |
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479 | |
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480 | default: |
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481 | break; |
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482 | } |
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483 | completeLonLatClient() ; |
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484 | } |
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485 | CATCH_DUMP_ATTR |
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486 | |
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487 | /*! |
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488 | Fill in the values for lonvalue_1d and latvalue_1d of rectilinear domain |
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489 | Range of longitude value from 0 - 360 |
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490 | Range of latitude value from -90 - +90 |
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491 | */ |
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492 | void CDomain::fillInRectilinearLonLat() |
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493 | TRY |
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494 | { |
---|
495 | if (!lonvalue_rectilinear_read_from_file.isEmpty() && lonvalue_2d.isEmpty() && lonvalue_1d.isEmpty() ) |
---|
496 | { |
---|
497 | lonvalue_1d.resize(ni); |
---|
498 | for (int idx = 0; idx < ni; ++idx) |
---|
499 | lonvalue_1d(idx) = lonvalue_rectilinear_read_from_file(idx+ibegin); |
---|
500 | lon_start.setValue(lonvalue_rectilinear_read_from_file(0)); |
---|
501 | lon_end.setValue(lonvalue_rectilinear_read_from_file(ni_glo-1)); |
---|
502 | } |
---|
503 | else if (has_lon_in_read_file.isEmpty() || !has_lon_in_read_file) |
---|
504 | { |
---|
505 | if (!lonvalue_2d.isEmpty()) lonvalue_2d.free(); |
---|
506 | lonvalue_1d.resize(ni); |
---|
507 | double lonRange = lon_end - lon_start; |
---|
508 | double lonStep = (1 == ni_glo.getValue()) ? lonRange : lonRange/double(ni_glo.getValue()-1); |
---|
509 | |
---|
510 | // Assign lon value |
---|
511 | for (int i = 0; i < ni; ++i) |
---|
512 | { |
---|
513 | if (0 == (ibegin + i)) |
---|
514 | { |
---|
515 | lonvalue_1d(i) = lon_start; |
---|
516 | } |
---|
517 | else if (ni_glo == (ibegin + i + 1)) |
---|
518 | { |
---|
519 | lonvalue_1d(i) = lon_end; |
---|
520 | } |
---|
521 | else |
---|
522 | { |
---|
523 | lonvalue_1d(i) = (ibegin + i) * lonStep + lon_start; |
---|
524 | } |
---|
525 | } |
---|
526 | } |
---|
527 | |
---|
528 | |
---|
529 | if (!latvalue_rectilinear_read_from_file.isEmpty() && latvalue_2d.isEmpty() && latvalue_1d.isEmpty()) |
---|
530 | { |
---|
531 | latvalue_1d.resize(nj); |
---|
532 | for (int idx = 0; idx < nj; ++idx) |
---|
533 | latvalue_1d(idx) = latvalue_rectilinear_read_from_file(idx+jbegin); |
---|
534 | lat_start.setValue(latvalue_rectilinear_read_from_file(0)); |
---|
535 | lat_end.setValue(latvalue_rectilinear_read_from_file(nj_glo-1)); |
---|
536 | } |
---|
537 | else if (has_lat_in_read_file.isEmpty() || !has_lat_in_read_file) |
---|
538 | { |
---|
539 | if (!latvalue_2d.isEmpty()) latvalue_1d.free(); |
---|
540 | latvalue_1d.resize(nj); |
---|
541 | |
---|
542 | double latRange = lat_end - lat_start; |
---|
543 | double latStep = (1 == nj_glo.getValue()) ? latRange : latRange/double(nj_glo.getValue()-1); |
---|
544 | |
---|
545 | for (int j = 0; j < nj; ++j) |
---|
546 | { |
---|
547 | if (0 == (jbegin + j)) |
---|
548 | { |
---|
549 | latvalue_1d(j) = lat_start; |
---|
550 | } |
---|
551 | else if (nj_glo == (jbegin + j + 1)) |
---|
552 | { |
---|
553 | latvalue_1d(j) = lat_end; |
---|
554 | } |
---|
555 | else |
---|
556 | { |
---|
557 | latvalue_1d(j) = (jbegin + j) * latStep + lat_start; |
---|
558 | } |
---|
559 | } |
---|
560 | } |
---|
561 | } |
---|
562 | CATCH_DUMP_ATTR |
---|
563 | |
---|
564 | /* |
---|
565 | Fill in 2D longitude and latitude of curvilinear domain read from a file. |
---|
566 | If there are already longitude and latitude defined by model. We just ignore read value. |
---|
567 | */ |
---|
568 | void CDomain::fillInCurvilinearLonLat() |
---|
569 | TRY |
---|
570 | { |
---|
571 | if (!lonvalue_curvilinear_read_from_file.isEmpty() && lonvalue_2d.isEmpty() && lonvalue_1d.isEmpty()) |
---|
572 | { |
---|
573 | lonvalue_2d.resize(ni,nj); |
---|
574 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
575 | for (int idx = 0; idx < ni; ++idx) |
---|
576 | lonvalue_2d(idx,jdx) = lonvalue_curvilinear_read_from_file(idx, jdx); |
---|
577 | |
---|
578 | lonvalue_curvilinear_read_from_file.free(); |
---|
579 | } |
---|
580 | |
---|
581 | if (!latvalue_curvilinear_read_from_file.isEmpty() && latvalue_2d.isEmpty() && latvalue_1d.isEmpty()) |
---|
582 | { |
---|
583 | latvalue_2d.resize(ni,nj); |
---|
584 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
585 | for (int idx = 0; idx < ni; ++idx) |
---|
586 | latvalue_2d(idx,jdx) = latvalue_curvilinear_read_from_file(idx, jdx); |
---|
587 | |
---|
588 | latvalue_curvilinear_read_from_file.free(); |
---|
589 | } |
---|
590 | |
---|
591 | if (!bounds_lonvalue_curvilinear_read_from_file.isEmpty() && bounds_lon_2d.isEmpty() && bounds_lon_1d.isEmpty()) |
---|
592 | { |
---|
593 | bounds_lon_2d.resize(nvertex,ni,nj); |
---|
594 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
595 | for (int idx = 0; idx < ni; ++idx) |
---|
596 | for (int ndx = 0; ndx < nvertex; ++ndx) |
---|
597 | bounds_lon_2d(ndx,idx,jdx) = bounds_lonvalue_curvilinear_read_from_file(ndx,idx, jdx); |
---|
598 | |
---|
599 | bounds_lonvalue_curvilinear_read_from_file.free(); |
---|
600 | } |
---|
601 | |
---|
602 | if (!bounds_latvalue_curvilinear_read_from_file.isEmpty() && bounds_lat_2d.isEmpty() && bounds_lat_1d.isEmpty()) |
---|
603 | { |
---|
604 | bounds_lat_2d.resize(nvertex,ni,nj); |
---|
605 | for (int jdx = 0; jdx < nj; ++jdx) |
---|
606 | for (int idx = 0; idx < ni; ++idx) |
---|
607 | for (int ndx = 0; ndx < nvertex; ++ndx) |
---|
608 | bounds_lat_2d(ndx,idx,jdx) = bounds_latvalue_curvilinear_read_from_file(ndx,idx, jdx); |
---|
609 | |
---|
610 | bounds_latvalue_curvilinear_read_from_file.free(); |
---|
611 | } |
---|
612 | } |
---|
613 | CATCH_DUMP_ATTR |
---|
614 | |
---|
615 | /* |
---|
616 | Fill in longitude and latitude of unstructured domain read from a file |
---|
617 | If there are already longitude and latitude defined by model. We just igonore reading value. |
---|
618 | */ |
---|
619 | void CDomain::fillInUnstructuredLonLat() |
---|
620 | TRY |
---|
621 | { |
---|
622 | if (i_index.isEmpty()) |
---|
623 | { |
---|
624 | i_index.resize(ni); |
---|
625 | for(int idx = 0; idx < ni; ++idx) i_index(idx)=ibegin+idx; |
---|
626 | } |
---|
627 | |
---|
628 | if (!lonvalue_unstructured_read_from_file.isEmpty() && lonvalue_1d.isEmpty()) |
---|
629 | { |
---|
630 | lonvalue_1d.resize(ni); |
---|
631 | for (int idx = 0; idx < ni; ++idx) |
---|
632 | lonvalue_1d(idx) = lonvalue_unstructured_read_from_file(idx); |
---|
633 | |
---|
634 | // We dont need these values anymore, so just delete them |
---|
635 | lonvalue_unstructured_read_from_file.free(); |
---|
636 | } |
---|
637 | |
---|
638 | if (!latvalue_unstructured_read_from_file.isEmpty() && latvalue_1d.isEmpty()) |
---|
639 | { |
---|
640 | latvalue_1d.resize(ni); |
---|
641 | for (int idx = 0; idx < ni; ++idx) |
---|
642 | latvalue_1d(idx) = latvalue_unstructured_read_from_file(idx); |
---|
643 | |
---|
644 | // We dont need these values anymore, so just delete them |
---|
645 | latvalue_unstructured_read_from_file.free(); |
---|
646 | } |
---|
647 | |
---|
648 | if (!bounds_lonvalue_unstructured_read_from_file.isEmpty() && bounds_lon_1d.isEmpty()) |
---|
649 | { |
---|
650 | int nbVertex = nvertex; |
---|
651 | bounds_lon_1d.resize(nbVertex,ni); |
---|
652 | for (int idx = 0; idx < ni; ++idx) |
---|
653 | for (int jdx = 0; jdx < nbVertex; ++jdx) |
---|
654 | bounds_lon_1d(jdx,idx) = bounds_lonvalue_unstructured_read_from_file(jdx, idx); |
---|
655 | |
---|
656 | // We dont need these values anymore, so just delete them |
---|
657 | bounds_lonvalue_unstructured_read_from_file.free(); |
---|
658 | } |
---|
659 | |
---|
660 | if (!bounds_latvalue_unstructured_read_from_file.isEmpty() && bounds_lat_1d.isEmpty()) |
---|
661 | { |
---|
662 | int nbVertex = nvertex; |
---|
663 | bounds_lat_1d.resize(nbVertex,ni); |
---|
664 | for (int idx = 0; idx < ni; ++idx) |
---|
665 | for (int jdx = 0; jdx < nbVertex; ++jdx) |
---|
666 | bounds_lat_1d(jdx,idx) = bounds_latvalue_unstructured_read_from_file(jdx, idx); |
---|
667 | |
---|
668 | // We dont need these values anymore, so just delete them |
---|
669 | bounds_latvalue_unstructured_read_from_file.free(); |
---|
670 | } |
---|
671 | } |
---|
672 | CATCH_DUMP_ATTR |
---|
673 | |
---|
674 | /* |
---|
675 | Get global longitude and latitude of rectilinear domain. |
---|
676 | */ |
---|
677 | void CDomain::AllgatherRectilinearLonLat(CArray<double,1>& lon, CArray<double,1>& lat, CArray<double,1>& lon_g, CArray<double,1>& lat_g) |
---|
678 | TRY |
---|
679 | { |
---|
680 | CContext* context = CContext::getCurrent(); |
---|
681 | // For now the assumption is that secondary server pools consist of the same number of procs. |
---|
682 | // CHANGE the line below if the assumption changes. |
---|
683 | int clientSize = context->intraCommSize_ ; |
---|
684 | lon_g.resize(ni_glo) ; |
---|
685 | lat_g.resize(nj_glo) ; |
---|
686 | |
---|
687 | |
---|
688 | int* ibegin_g = new int[clientSize] ; |
---|
689 | int* jbegin_g = new int[clientSize] ; |
---|
690 | int* ni_g = new int[clientSize] ; |
---|
691 | int* nj_g = new int[clientSize] ; |
---|
692 | int v ; |
---|
693 | v=ibegin ; |
---|
694 | MPI_Allgather(&v,1,MPI_INT,ibegin_g,1,MPI_INT,context->intraComm_) ; |
---|
695 | v=jbegin ; |
---|
696 | MPI_Allgather(&v,1,MPI_INT,jbegin_g,1,MPI_INT,context->intraComm_) ; |
---|
697 | v=ni ; |
---|
698 | MPI_Allgather(&v,1,MPI_INT,ni_g,1,MPI_INT,context->intraComm_) ; |
---|
699 | v=nj ; |
---|
700 | MPI_Allgather(&v,1,MPI_INT,nj_g,1,MPI_INT,context->intraComm_) ; |
---|
701 | |
---|
702 | MPI_Allgatherv(lon.dataFirst(),ni,MPI_DOUBLE,lon_g.dataFirst(),ni_g, ibegin_g,MPI_DOUBLE,context->intraComm_) ; |
---|
703 | MPI_Allgatherv(lat.dataFirst(),nj,MPI_DOUBLE,lat_g.dataFirst(),nj_g, jbegin_g,MPI_DOUBLE,context->intraComm_) ; |
---|
704 | |
---|
705 | delete[] ibegin_g ; |
---|
706 | delete[] jbegin_g ; |
---|
707 | delete[] ni_g ; |
---|
708 | delete[] nj_g ; |
---|
709 | } |
---|
710 | CATCH_DUMP_ATTR |
---|
711 | |
---|
712 | void CDomain::fillInRectilinearBoundLonLat(CArray<double,1>& lon, CArray<double,1>& lat, |
---|
713 | CArray<double,2>& boundsLon, CArray<double,2>& boundsLat) |
---|
714 | TRY |
---|
715 | { |
---|
716 | int i,j,k; |
---|
717 | |
---|
718 | const int nvertexValue = 4; |
---|
719 | boundsLon.resize(nvertexValue,ni*nj); |
---|
720 | |
---|
721 | if (ni_glo>1) |
---|
722 | { |
---|
723 | double lonStepStart = lon(1)-lon(0); |
---|
724 | bounds_lon_start=lon(0) - lonStepStart/2; |
---|
725 | double lonStepEnd = lon(ni_glo-1)-lon(ni_glo-2); |
---|
726 | bounds_lon_end=lon(ni_glo-1) + lonStepEnd/2; |
---|
727 | double errorBoundsLon = std::abs(360-std::abs(bounds_lon_end-bounds_lon_start)); |
---|
728 | |
---|
729 | // if errorBoundsLon is reasonably small (0.1 x cell size) consider it as closed in longitude |
---|
730 | if (errorBoundsLon < std::abs(lonStepStart)*1e-1 || errorBoundsLon < std::abs(lonStepEnd)*1e-1 ) |
---|
731 | { |
---|
732 | bounds_lon_start= (lon(0) + lon(ni_glo-1)-360)/2 ; |
---|
733 | bounds_lon_end= (lon(0) +360 + lon(ni_glo-1))/2 ; |
---|
734 | } |
---|
735 | } |
---|
736 | else |
---|
737 | { |
---|
738 | if (bounds_lon_start.isEmpty()) bounds_lon_start=-180. ; |
---|
739 | if (bounds_lon_end.isEmpty()) bounds_lon_end=180.-1e-8 ; |
---|
740 | } |
---|
741 | |
---|
742 | for(j=0;j<nj;++j) |
---|
743 | for(i=0;i<ni;++i) |
---|
744 | { |
---|
745 | k=j*ni+i; |
---|
746 | boundsLon(0,k) = boundsLon(1,k) = (0 == (ibegin + i)) ? bounds_lon_start |
---|
747 | : (lon(ibegin + i)+lon(ibegin + i-1))/2; |
---|
748 | boundsLon(2,k) = boundsLon(3,k) = ((ibegin + i + 1) == ni_glo) ? bounds_lon_end |
---|
749 | : (lon(ibegin + i + 1)+lon(ibegin + i))/2; |
---|
750 | } |
---|
751 | |
---|
752 | |
---|
753 | boundsLat.resize(nvertexValue,nj*ni); |
---|
754 | bool isNorthPole=false ; |
---|
755 | bool isSouthPole=false ; |
---|
756 | if (std::abs(90 - std::abs(lat(0))) < NumTraits<double>::epsilon()) isNorthPole = true; |
---|
757 | if (std::abs(90 - std::abs(lat(nj_glo-1))) < NumTraits<double>::epsilon()) isSouthPole = true; |
---|
758 | |
---|
759 | // lat boundaries beyond pole the assimilate it to pole |
---|
760 | // lat boundarie is relativelly close to pole (0.1 x cell size) assimilate it to pole |
---|
761 | if (nj_glo>1) |
---|
762 | { |
---|
763 | double latStepStart = lat(1)-lat(0); |
---|
764 | if (isNorthPole) bounds_lat_start=lat(0); |
---|
765 | else |
---|
766 | { |
---|
767 | bounds_lat_start=lat(0)-latStepStart/2; |
---|
768 | if (bounds_lat_start >= 90 ) bounds_lat_start=90 ; |
---|
769 | else if (bounds_lat_start <= -90 ) bounds_lat_start=-90 ; |
---|
770 | else if (bounds_lat_start <= 90 && bounds_lat_start >= lat(0)) |
---|
771 | { |
---|
772 | if ( std::abs(90-bounds_lat_start) <= 0.1*std::abs(latStepStart)) bounds_lat_start=90 ; |
---|
773 | } |
---|
774 | else if (bounds_lat_start >= -90 && bounds_lat_start <= lat(0)) |
---|
775 | { |
---|
776 | if ( std::abs(-90 - bounds_lat_start) <= 0.1*std::abs(latStepStart)) bounds_lat_start=-90 ; |
---|
777 | } |
---|
778 | } |
---|
779 | |
---|
780 | double latStepEnd = lat(nj_glo-1)-lat(nj_glo-2); |
---|
781 | if (isSouthPole) bounds_lat_end=lat(nj_glo-1); |
---|
782 | else |
---|
783 | { |
---|
784 | bounds_lat_end=lat(nj_glo-1)+latStepEnd/2; |
---|
785 | |
---|
786 | if (bounds_lat_end >= 90 ) bounds_lat_end=90 ; |
---|
787 | else if (bounds_lat_end <= -90 ) bounds_lat_end=-90 ; |
---|
788 | else if (bounds_lat_end <= 90 && bounds_lat_end >= lat(nj_glo-1)) |
---|
789 | { |
---|
790 | if ( std::abs(90-bounds_lat_end) <= 0.1*std::abs(latStepEnd)) bounds_lat_end=90 ; |
---|
791 | } |
---|
792 | else if (bounds_lat_end >= -90 && bounds_lat_end <= lat(nj_glo-1)) |
---|
793 | { |
---|
794 | if ( std::abs(-90 - bounds_lat_end) <= 0.1*std::abs(latStepEnd)) bounds_lat_end=-90 ; |
---|
795 | } |
---|
796 | } |
---|
797 | } |
---|
798 | else |
---|
799 | { |
---|
800 | if (bounds_lat_start.isEmpty()) bounds_lat_start=-90. ; |
---|
801 | if (bounds_lat_end.isEmpty()) bounds_lat_end=90 ; |
---|
802 | } |
---|
803 | |
---|
804 | for(j=0;j<nj;++j) |
---|
805 | for(i=0;i<ni;++i) |
---|
806 | { |
---|
807 | k=j*ni+i; |
---|
808 | boundsLat(1,k) = boundsLat(2,k) = (0 == (jbegin + j)) ? bounds_lat_start |
---|
809 | : (lat(jbegin + j)+lat(jbegin + j-1))/2; |
---|
810 | boundsLat(0,k) = boundsLat(3,k) = ((jbegin + j +1) == nj_glo) ? bounds_lat_end |
---|
811 | : (lat(jbegin + j + 1)+lat(jbegin + j))/2; |
---|
812 | } |
---|
813 | } |
---|
814 | CATCH_DUMP_ATTR |
---|
815 | |
---|
816 | /* |
---|
817 | General check of the domain to verify its mandatory attributes |
---|
818 | */ |
---|
819 | void CDomain::checkDomain(void) |
---|
820 | TRY |
---|
821 | { |
---|
822 | if (type.isEmpty()) |
---|
823 | { |
---|
824 | ERROR("CDomain::checkDomain(void)", |
---|
825 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
826 | << "The domain type is mandatory, " |
---|
827 | << "please define the 'type' attribute.") |
---|
828 | } |
---|
829 | |
---|
830 | if (type == type_attr::gaussian) |
---|
831 | { |
---|
832 | hasPole=true ; |
---|
833 | type.setValue(type_attr::unstructured) ; |
---|
834 | } |
---|
835 | else if (type == type_attr::rectilinear) hasPole=true ; |
---|
836 | |
---|
837 | if (type == type_attr::unstructured) |
---|
838 | { |
---|
839 | if (ni_glo.isEmpty()) |
---|
840 | { |
---|
841 | ERROR("CDomain::checkDomain(void)", |
---|
842 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
843 | << "The global domain is badly defined, " |
---|
844 | << "the mandatory 'ni_glo' attribute is missing.") |
---|
845 | } |
---|
846 | else if (ni_glo <= 0) |
---|
847 | { |
---|
848 | ERROR("CDomain::checkDomain(void)", |
---|
849 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
850 | << "The global domain is badly defined, " |
---|
851 | << "'ni_glo' attribute should be strictly positive so 'ni_glo = " << ni_glo.getValue() << "' is invalid.") |
---|
852 | } |
---|
853 | isUnstructed_ = true; |
---|
854 | nj_glo = 1; |
---|
855 | nj = 1; |
---|
856 | jbegin = 0; |
---|
857 | if (!i_index.isEmpty()) |
---|
858 | { |
---|
859 | ni = i_index.numElements(); |
---|
860 | j_index.resize(ni); |
---|
861 | for(int i=0;i<ni;++i) j_index(i)=0; |
---|
862 | } |
---|
863 | |
---|
864 | |
---|
865 | // if (!area.isEmpty()) area.transposeSelf(1, 0); // => to be checked why is it transposed |
---|
866 | } |
---|
867 | |
---|
868 | if (ni_glo.isEmpty()) |
---|
869 | { |
---|
870 | ERROR("CDomain::checkDomain(void)", |
---|
871 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
872 | << "The global domain is badly defined, " |
---|
873 | << "the mandatory 'ni_glo' attribute is missing.") |
---|
874 | } |
---|
875 | else if (ni_glo <= 0) |
---|
876 | { |
---|
877 | ERROR("CDomain::checkDomain(void)", |
---|
878 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
879 | << "The global domain is badly defined, " |
---|
880 | << "'ni_glo' attribute should be strictly positive so 'ni_glo = " << ni_glo.getValue() << "' is invalid.") |
---|
881 | } |
---|
882 | |
---|
883 | if (nj_glo.isEmpty()) |
---|
884 | { |
---|
885 | ERROR("CDomain::checkDomain(void)", |
---|
886 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
887 | << "The global domain is badly defined, " |
---|
888 | << "the mandatory 'nj_glo' attribute is missing.") |
---|
889 | } |
---|
890 | else if (nj_glo <= 0) |
---|
891 | { |
---|
892 | ERROR("CDomain::checkDomain(void)", |
---|
893 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
894 | << "The global domain is badly defined, " |
---|
895 | << "'nj_glo' attribute should be strictly positive so 'nj_glo = " << nj_glo.getValue() << "' is invalid.") |
---|
896 | } |
---|
897 | |
---|
898 | checkLocalIDomain(); |
---|
899 | checkLocalJDomain(); |
---|
900 | |
---|
901 | if (i_index.isEmpty()) |
---|
902 | { |
---|
903 | i_index.resize(ni*nj); |
---|
904 | for (int j = 0; j < nj; ++j) |
---|
905 | for (int i = 0; i < ni; ++i) i_index(i+j*ni) = i+ibegin; |
---|
906 | } |
---|
907 | |
---|
908 | if (j_index.isEmpty()) |
---|
909 | { |
---|
910 | j_index.resize(ni*nj); |
---|
911 | for (int j = 0; j < nj; ++j) |
---|
912 | for (int i = 0; i < ni; ++i) j_index(i+j*ni) = j+jbegin; |
---|
913 | } |
---|
914 | } |
---|
915 | CATCH_DUMP_ATTR |
---|
916 | |
---|
917 | void CDomain::compute2dBox(void) |
---|
918 | { |
---|
919 | if (i_index.numElements()==0) |
---|
920 | { |
---|
921 | ibeginValue_= 0 ; |
---|
922 | jbeginValue_= 0 ; |
---|
923 | niValue_= 0 ; |
---|
924 | njValue_= 0 ; |
---|
925 | } |
---|
926 | else |
---|
927 | { |
---|
928 | int maxI=0 ; |
---|
929 | int maxJ=0 ; |
---|
930 | int minI=nj_glo*ni_glo ; |
---|
931 | int minJ=nj_glo*ni_glo ; |
---|
932 | int i,j,k,ij ; |
---|
933 | for(int k=0; k<i_index.numElements(); k++) |
---|
934 | { |
---|
935 | ij=j_index(k)*ni_glo + i_index(k) ; |
---|
936 | i=ij%ni_glo ; |
---|
937 | j=ij/ni_glo ; |
---|
938 | if (i<minI) minI=i; |
---|
939 | if (j<minJ) minJ=j; |
---|
940 | if (i>maxI) maxI=i; |
---|
941 | if (j>maxJ) maxJ=j; |
---|
942 | } |
---|
943 | ibeginValue_=minI ; |
---|
944 | jbeginValue_=minJ ; |
---|
945 | niValue_=maxI-minI+1 ; |
---|
946 | njValue_=maxJ-minJ+1 ; |
---|
947 | } |
---|
948 | } |
---|
949 | |
---|
950 | size_t CDomain::getGlobalWrittenSize(void) |
---|
951 | { |
---|
952 | return ni_glo*nj_glo ; |
---|
953 | } |
---|
954 | //---------------------------------------------------------------- |
---|
955 | |
---|
956 | // Check validity of local domain on using the combination of 3 parameters: ibegin, ni and i_index |
---|
957 | void CDomain::checkLocalIDomain(void) |
---|
958 | TRY |
---|
959 | { |
---|
960 | // If ibegin and ni are provided then we use them to check the validity of local domain |
---|
961 | if (i_index.isEmpty() && !ibegin.isEmpty() && !ni.isEmpty()) |
---|
962 | { |
---|
963 | if ((ni.getValue() < 0 || ibegin.getValue() < 0) || ((ibegin.getValue() + ni.getValue()) > ni_glo.getValue())) |
---|
964 | { |
---|
965 | ERROR("CDomain::checkLocalIDomain(void)", |
---|
966 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
967 | << "The local domain is wrongly defined," |
---|
968 | << " check the attributes 'ni_glo' (" << ni_glo.getValue() << "), 'ni' (" << ni.getValue() << ") and 'ibegin' (" << ibegin.getValue() << ")"); |
---|
969 | } |
---|
970 | } |
---|
971 | |
---|
972 | // i_index has higher priority than ibegin and ni |
---|
973 | if (!i_index.isEmpty()) |
---|
974 | { |
---|
975 | int minIIndex = (0 < i_index.numElements()) ? i_index(0) : 0; |
---|
976 | if (ni.isEmpty()) |
---|
977 | { |
---|
978 | // No information about ni |
---|
979 | int minIndex = ni_glo*nj_glo - 1; |
---|
980 | int maxIndex = 0; |
---|
981 | for (int idx = 0; idx < i_index.numElements(); ++idx) |
---|
982 | { |
---|
983 | if (i_index(idx) < minIndex) minIndex = i_index(idx); |
---|
984 | if (i_index(idx) > maxIndex) maxIndex = i_index(idx); |
---|
985 | } |
---|
986 | if (i_index.numElements()) |
---|
987 | { |
---|
988 | ni = maxIndex - minIndex + 1; |
---|
989 | minIIndex = minIndex; |
---|
990 | } |
---|
991 | else ni = 0; |
---|
992 | } |
---|
993 | |
---|
994 | // It's not so correct but if ibegin is not the first value of i_index |
---|
995 | // then data on local domain has user-defined distribution. In this case, ibegin, ni have no meaning. |
---|
996 | if (ibegin.isEmpty()) ibegin = minIIndex; |
---|
997 | } |
---|
998 | else if (ibegin.isEmpty() && ni.isEmpty()) |
---|
999 | { |
---|
1000 | ibegin = 0; |
---|
1001 | ni = ni_glo; |
---|
1002 | } |
---|
1003 | else if ((!ibegin.isEmpty() && ni.isEmpty()) || (ibegin.isEmpty() && !ni.isEmpty())) |
---|
1004 | { |
---|
1005 | ERROR("CDomain::checkLocalIDomain(void)", |
---|
1006 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1007 | << "The local domain is wrongly defined," << endl |
---|
1008 | << "i_index is empty and either 'ni' or 'ibegin' is not defined. " |
---|
1009 | << "If 'ni' and 'ibegin' are used to define a domain, both of them must not be empty."); |
---|
1010 | } |
---|
1011 | |
---|
1012 | |
---|
1013 | if ((ni.getValue() < 0 || ibegin.getValue() < 0)) |
---|
1014 | { |
---|
1015 | ERROR("CDomain::checkLocalIDomain(void)", |
---|
1016 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1017 | << "The local domain is wrongly defined," |
---|
1018 | << " check the attributes 'ni_glo' (" << ni_glo.getValue() << "), 'ni' (" << ni.getValue() << ") and 'ibegin' (" << ibegin.getValue() << ")"); |
---|
1019 | } |
---|
1020 | } |
---|
1021 | CATCH_DUMP_ATTR |
---|
1022 | |
---|
1023 | // Check validity of local domain on using the combination of 3 parameters: jbegin, nj and j_index |
---|
1024 | void CDomain::checkLocalJDomain(void) |
---|
1025 | TRY |
---|
1026 | { |
---|
1027 | // If jbegin and nj are provided then we use them to check the validity of local domain |
---|
1028 | if (j_index.isEmpty() && !jbegin.isEmpty() && !nj.isEmpty()) |
---|
1029 | { |
---|
1030 | if ((nj.getValue() < 0 || jbegin.getValue() < 0) || (jbegin.getValue() + nj.getValue()) > nj_glo.getValue()) |
---|
1031 | { |
---|
1032 | ERROR("CDomain::checkLocalJDomain(void)", |
---|
1033 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1034 | << "The local domain is wrongly defined," |
---|
1035 | << " check the attributes 'nj_glo' (" << nj_glo.getValue() << "), 'nj' (" << nj.getValue() << ") and 'jbegin' (" << jbegin.getValue() << ")"); |
---|
1036 | } |
---|
1037 | } |
---|
1038 | |
---|
1039 | if (!j_index.isEmpty()) |
---|
1040 | { |
---|
1041 | int minJIndex = (0 < j_index.numElements()) ? j_index(0) : 0; |
---|
1042 | if (nj.isEmpty()) |
---|
1043 | { |
---|
1044 | // No information about nj |
---|
1045 | int minIndex = ni_glo*nj_glo - 1; |
---|
1046 | int maxIndex = 0; |
---|
1047 | for (int idx = 0; idx < j_index.numElements(); ++idx) |
---|
1048 | { |
---|
1049 | if (j_index(idx) < minIndex) minIndex = j_index(idx); |
---|
1050 | if (j_index(idx) > maxIndex) maxIndex = j_index(idx); |
---|
1051 | } |
---|
1052 | if (j_index.numElements()) { |
---|
1053 | nj = maxIndex - minIndex + 1; |
---|
1054 | minJIndex = minIndex; |
---|
1055 | } |
---|
1056 | else |
---|
1057 | nj = 0; |
---|
1058 | } |
---|
1059 | // It's the same as checkLocalIDomain. It's not so correct but if jbegin is not the first value of j_index |
---|
1060 | // then data on local domain has user-defined distribution. In this case, jbegin has no meaning. |
---|
1061 | if (jbegin.isEmpty()) jbegin = minJIndex; |
---|
1062 | } |
---|
1063 | else if (jbegin.isEmpty() && nj.isEmpty()) |
---|
1064 | { |
---|
1065 | jbegin = 0; |
---|
1066 | nj = nj_glo; |
---|
1067 | } |
---|
1068 | |
---|
1069 | |
---|
1070 | if ((nj.getValue() < 0 || jbegin.getValue() < 0)) |
---|
1071 | { |
---|
1072 | ERROR("CDomain::checkLocalJDomain(void)", |
---|
1073 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1074 | << "The local domain is wrongly defined," |
---|
1075 | << " check the attributes 'nj_glo' (" << nj_glo.getValue() << "), 'nj' (" << nj.getValue() << ") and 'jbegin' (" << jbegin.getValue() << ")"); |
---|
1076 | } |
---|
1077 | } |
---|
1078 | CATCH_DUMP_ATTR |
---|
1079 | |
---|
1080 | //---------------------------------------------------------------- |
---|
1081 | |
---|
1082 | void CDomain::checkMask(void) |
---|
1083 | TRY |
---|
1084 | { |
---|
1085 | if (!mask_1d.isEmpty() && !mask_2d.isEmpty()) |
---|
1086 | ERROR("CDomain::checkMask(void)", |
---|
1087 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1088 | << "Both mask_1d and mask_2d are defined but only one can be used at the same time." << std::endl |
---|
1089 | << "Please define only one mask: 'mask_1d' or 'mask_2d'."); |
---|
1090 | |
---|
1091 | if (!mask_1d.isEmpty() && mask_2d.isEmpty()) |
---|
1092 | { |
---|
1093 | if (mask_1d.numElements() != i_index.numElements()) |
---|
1094 | ERROR("CDomain::checkMask(void)", |
---|
1095 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1096 | << "'mask_1d' does not have the same size as the local domain." << std::endl |
---|
1097 | << "Local size is " << i_index.numElements() << "." << std::endl |
---|
1098 | << "Mask size is " << mask_1d.numElements() << "."); |
---|
1099 | } |
---|
1100 | |
---|
1101 | if (mask_1d.isEmpty() && !mask_2d.isEmpty()) |
---|
1102 | { |
---|
1103 | if (mask_2d.extent(0) != ni || mask_2d.extent(1) != nj) |
---|
1104 | ERROR("CDomain::checkMask(void)", |
---|
1105 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1106 | << "The mask does not have the same size as the local domain." << std::endl |
---|
1107 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
1108 | << "Mask size is " << mask_2d.extent(0) << " x " << mask_2d.extent(1) << "."); |
---|
1109 | } |
---|
1110 | |
---|
1111 | if (!mask_2d.isEmpty()) |
---|
1112 | { |
---|
1113 | domainMask.resize(mask_2d.extent(0) * mask_2d.extent(1)); |
---|
1114 | for (int j = 0; j < nj; ++j) |
---|
1115 | for (int i = 0; i < ni; ++i) domainMask(i+j*ni) = mask_2d(i,j); |
---|
1116 | // mask_2d.reset(); |
---|
1117 | } |
---|
1118 | else if (mask_1d.isEmpty()) |
---|
1119 | { |
---|
1120 | domainMask.resize(i_index.numElements()); |
---|
1121 | for (int i = 0; i < i_index.numElements(); ++i) domainMask(i) = true; |
---|
1122 | } |
---|
1123 | else |
---|
1124 | { |
---|
1125 | domainMask.resize(mask_1d.numElements()); |
---|
1126 | domainMask=mask_1d ; |
---|
1127 | } |
---|
1128 | } |
---|
1129 | CATCH_DUMP_ATTR |
---|
1130 | |
---|
1131 | //---------------------------------------------------------------- |
---|
1132 | |
---|
1133 | void CDomain::checkDomainData(void) |
---|
1134 | TRY |
---|
1135 | { |
---|
1136 | if (data_dim.isEmpty()) |
---|
1137 | { |
---|
1138 | data_dim.setValue(1); |
---|
1139 | } |
---|
1140 | else if (!(data_dim.getValue() == 1 || data_dim.getValue() == 2)) |
---|
1141 | { |
---|
1142 | ERROR("CDomain::checkDomainData(void)", |
---|
1143 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1144 | << "The data dimension is invalid, 'data_dim' must be 1 or 2 not << " << data_dim.getValue() << "."); |
---|
1145 | } |
---|
1146 | |
---|
1147 | if (data_ibegin.isEmpty()) |
---|
1148 | data_ibegin.setValue(0); |
---|
1149 | if (data_jbegin.isEmpty()) |
---|
1150 | data_jbegin.setValue(0); |
---|
1151 | |
---|
1152 | if (data_ni.isEmpty()) |
---|
1153 | { |
---|
1154 | data_ni.setValue((data_dim == 1) ? (ni.getValue() * nj.getValue()) : ni.getValue()); |
---|
1155 | } |
---|
1156 | else if (data_ni.getValue() < 0) |
---|
1157 | { |
---|
1158 | ERROR("CDomain::checkDomainData(void)", |
---|
1159 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1160 | << "The data size cannot be negative ('data_ni' = " << data_ni.getValue() << ")."); |
---|
1161 | } |
---|
1162 | |
---|
1163 | if (data_nj.isEmpty()) |
---|
1164 | { |
---|
1165 | data_nj.setValue((data_dim.getValue() == 1) ? (ni.getValue() * nj.getValue()) : nj.getValue()); |
---|
1166 | } |
---|
1167 | else if (data_nj.getValue() < 0) |
---|
1168 | { |
---|
1169 | ERROR("CDomain::checkDomainData(void)", |
---|
1170 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1171 | << "The data size cannot be negative ('data_nj' = " << data_nj.getValue() << ")."); |
---|
1172 | } |
---|
1173 | } |
---|
1174 | CATCH_DUMP_ATTR |
---|
1175 | |
---|
1176 | //---------------------------------------------------------------- |
---|
1177 | |
---|
1178 | void CDomain::checkCompression(void) |
---|
1179 | TRY |
---|
1180 | { |
---|
1181 | int i,j,ind; |
---|
1182 | if (!data_i_index.isEmpty()) |
---|
1183 | { |
---|
1184 | if (!data_j_index.isEmpty() && |
---|
1185 | data_j_index.numElements() != data_i_index.numElements()) |
---|
1186 | { |
---|
1187 | ERROR("CDomain::checkCompression(void)", |
---|
1188 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1189 | << "'data_i_index' and 'data_j_index' arrays must have the same size." << std::endl |
---|
1190 | << "'data_i_index' size = " << data_i_index.numElements() << std::endl |
---|
1191 | << "'data_j_index' size = " << data_j_index.numElements()); |
---|
1192 | } |
---|
1193 | |
---|
1194 | if (2 == data_dim) |
---|
1195 | { |
---|
1196 | if (data_j_index.isEmpty()) |
---|
1197 | { |
---|
1198 | ERROR("CDomain::checkCompression(void)", |
---|
1199 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1200 | << "'data_j_index' must be defined when 'data_i_index' is set and 'data_dim' is 2."); |
---|
1201 | } |
---|
1202 | for (int k=0; k<data_i_index.numElements(); ++k) |
---|
1203 | { |
---|
1204 | i = data_i_index(k)+data_ibegin ; |
---|
1205 | j = data_j_index(k)+data_jbegin ; |
---|
1206 | if (i>=0 && i<ni && j>=0 && j<nj) |
---|
1207 | { |
---|
1208 | ind=j*ni+i ; |
---|
1209 | if ( (ind<0)||(!domainMask(ind)) ) |
---|
1210 | { |
---|
1211 | data_i_index(k) = -1; |
---|
1212 | data_j_index(k) = -1; |
---|
1213 | } |
---|
1214 | } |
---|
1215 | else |
---|
1216 | { |
---|
1217 | data_i_index(k) = -1; |
---|
1218 | data_j_index(k) = -1; |
---|
1219 | } |
---|
1220 | } |
---|
1221 | } |
---|
1222 | else // (1 == data_dim) |
---|
1223 | { |
---|
1224 | if (data_j_index.isEmpty()) |
---|
1225 | { |
---|
1226 | data_j_index.resize(data_ni); |
---|
1227 | data_j_index = 0; |
---|
1228 | } |
---|
1229 | for (int k=0; k<data_i_index.numElements(); ++k) |
---|
1230 | { |
---|
1231 | i=data_i_index(k)+data_ibegin ; |
---|
1232 | if (i>=0 && i < domainMask.size()) |
---|
1233 | { |
---|
1234 | if (!domainMask(i)) data_i_index(k) = -1; |
---|
1235 | } |
---|
1236 | else |
---|
1237 | data_i_index(k) = -1; |
---|
1238 | |
---|
1239 | if ( (i<0)||(!domainMask(i)) ) data_i_index(k) = -1; |
---|
1240 | } |
---|
1241 | } |
---|
1242 | } |
---|
1243 | else |
---|
1244 | { |
---|
1245 | if (data_dim == 2 && !data_j_index.isEmpty()) |
---|
1246 | ERROR("CDomain::checkCompression(void)", |
---|
1247 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1248 | << "'data_i_index' must be defined when 'data_j_index' is set and 'data_dim' is 2."); |
---|
1249 | |
---|
1250 | if (1 == data_dim) |
---|
1251 | { |
---|
1252 | data_i_index.resize(data_ni); |
---|
1253 | data_j_index.resize(data_ni); |
---|
1254 | data_j_index = 0; |
---|
1255 | |
---|
1256 | for (int k = 0; k < data_ni; ++k) |
---|
1257 | { |
---|
1258 | i=k+data_ibegin ; |
---|
1259 | if (i>=0 && i < domainMask.size()) |
---|
1260 | { |
---|
1261 | if ( (i<0)||(!domainMask(i)) ) |
---|
1262 | data_i_index(k) = -1; |
---|
1263 | else |
---|
1264 | data_i_index(k) = k; |
---|
1265 | } |
---|
1266 | else |
---|
1267 | data_i_index(k) = -1; |
---|
1268 | } |
---|
1269 | } |
---|
1270 | else // (data_dim == 2) |
---|
1271 | { |
---|
1272 | const int dsize = data_ni * data_nj; |
---|
1273 | data_i_index.resize(dsize); |
---|
1274 | data_j_index.resize(dsize); |
---|
1275 | |
---|
1276 | for(int count = 0, kj = 0; kj < data_nj; ++kj) |
---|
1277 | { |
---|
1278 | for(int ki = 0; ki < data_ni; ++ki, ++count) |
---|
1279 | { |
---|
1280 | i = ki + data_ibegin; |
---|
1281 | j = kj + data_jbegin; |
---|
1282 | ind=j*ni+i ; |
---|
1283 | if (i>=0 && i<ni && j>=0 && j<nj) |
---|
1284 | { |
---|
1285 | if ( (ind<0)||(!domainMask(ind)) ) |
---|
1286 | { |
---|
1287 | data_i_index(count) = -1; |
---|
1288 | data_j_index(count) = -1; |
---|
1289 | } |
---|
1290 | else |
---|
1291 | { |
---|
1292 | data_i_index(count) = ki; |
---|
1293 | data_j_index(count) = kj; |
---|
1294 | } |
---|
1295 | } |
---|
1296 | else |
---|
1297 | { |
---|
1298 | data_i_index(count) = -1; |
---|
1299 | data_j_index(count) = -1; |
---|
1300 | } |
---|
1301 | } |
---|
1302 | } |
---|
1303 | } |
---|
1304 | } |
---|
1305 | } |
---|
1306 | CATCH_DUMP_ATTR |
---|
1307 | |
---|
1308 | //---------------------------------------------------------------- |
---|
1309 | void CDomain::computeLocalMask(void) |
---|
1310 | TRY |
---|
1311 | { |
---|
1312 | localMask.resize(i_index.numElements()) ; |
---|
1313 | localMask=false ; |
---|
1314 | |
---|
1315 | size_t dn=data_i_index.numElements() ; |
---|
1316 | int i,j ; |
---|
1317 | size_t k,ind ; |
---|
1318 | |
---|
1319 | for(k=0;k<dn;k++) |
---|
1320 | { |
---|
1321 | if (data_dim==2) |
---|
1322 | { |
---|
1323 | i=data_i_index(k)+data_ibegin ; |
---|
1324 | j=data_j_index(k)+data_jbegin ; |
---|
1325 | if (i>=0 && i<ni && j>=0 && j<nj) |
---|
1326 | { |
---|
1327 | ind=j*ni+i ; |
---|
1328 | localMask(ind)=domainMask(ind) ; |
---|
1329 | } |
---|
1330 | } |
---|
1331 | else |
---|
1332 | { |
---|
1333 | i=data_i_index(k)+data_ibegin ; |
---|
1334 | if (i>=0 && i<i_index.numElements()) |
---|
1335 | { |
---|
1336 | ind=i ; |
---|
1337 | localMask(ind)=domainMask(ind) ; |
---|
1338 | } |
---|
1339 | } |
---|
1340 | } |
---|
1341 | } |
---|
1342 | CATCH_DUMP_ATTR |
---|
1343 | |
---|
1344 | |
---|
1345 | //---------------------------------------------------------------- |
---|
1346 | |
---|
1347 | /* |
---|
1348 | Fill in longitude, latitude, bounds, and area into internal values (lonvalue, latvalue, bounds_lonvalue, bounds_latvalue, areavalue) |
---|
1349 | which will be used by XIOS. |
---|
1350 | */ |
---|
1351 | void CDomain::completeLonLatClient(void) |
---|
1352 | TRY |
---|
1353 | { |
---|
1354 | bool lonlatValueExisted = (0 != lonvalue.numElements()) || (0 != latvalue.numElements()); |
---|
1355 | checkBounds() ; |
---|
1356 | checkArea() ; |
---|
1357 | |
---|
1358 | if (!lonvalue_2d.isEmpty() && !lonlatValueExisted) |
---|
1359 | { |
---|
1360 | lonvalue.resize(ni * nj); |
---|
1361 | latvalue.resize(ni * nj); |
---|
1362 | if (hasBounds) |
---|
1363 | { |
---|
1364 | bounds_lonvalue.resize(nvertex, ni * nj); |
---|
1365 | bounds_latvalue.resize(nvertex, ni * nj); |
---|
1366 | } |
---|
1367 | |
---|
1368 | for (int j = 0; j < nj; ++j) |
---|
1369 | { |
---|
1370 | for (int i = 0; i < ni; ++i) |
---|
1371 | { |
---|
1372 | int k = j * ni + i; |
---|
1373 | |
---|
1374 | lonvalue(k) = lonvalue_2d(i,j); |
---|
1375 | latvalue(k) = latvalue_2d(i,j); |
---|
1376 | |
---|
1377 | if (hasBounds) |
---|
1378 | { |
---|
1379 | for (int n = 0; n < nvertex; ++n) |
---|
1380 | { |
---|
1381 | bounds_lonvalue(n,k) = bounds_lon_2d(n,i,j); |
---|
1382 | bounds_latvalue(n,k) = bounds_lat_2d(n,i,j); |
---|
1383 | } |
---|
1384 | } |
---|
1385 | } |
---|
1386 | } |
---|
1387 | } |
---|
1388 | else if (!lonvalue_1d.isEmpty() && !lonlatValueExisted) |
---|
1389 | { |
---|
1390 | if (type_attr::rectilinear == type) |
---|
1391 | { |
---|
1392 | if (ni == lonvalue_1d.numElements() && nj == latvalue_1d.numElements()) |
---|
1393 | { |
---|
1394 | lonvalue.resize(ni * nj); |
---|
1395 | latvalue.resize(ni * nj); |
---|
1396 | if (hasBounds) |
---|
1397 | { |
---|
1398 | bounds_lonvalue.resize(nvertex, ni * nj); |
---|
1399 | bounds_latvalue.resize(nvertex, ni * nj); |
---|
1400 | } |
---|
1401 | |
---|
1402 | for (int j = 0; j < nj; ++j) |
---|
1403 | { |
---|
1404 | for (int i = 0; i < ni; ++i) |
---|
1405 | { |
---|
1406 | int k = j * ni + i; |
---|
1407 | |
---|
1408 | lonvalue(k) = lonvalue_1d(i); |
---|
1409 | latvalue(k) = latvalue_1d(j); |
---|
1410 | |
---|
1411 | if (hasBounds) |
---|
1412 | { |
---|
1413 | for (int n = 0; n < nvertex; ++n) |
---|
1414 | { |
---|
1415 | bounds_lonvalue(n,k) = bounds_lon_1d(n,i); |
---|
1416 | bounds_latvalue(n,k) = bounds_lat_1d(n,j); |
---|
1417 | } |
---|
1418 | } |
---|
1419 | } |
---|
1420 | } |
---|
1421 | } |
---|
1422 | else if (i_index.numElements() == lonvalue_1d.numElements() && j_index.numElements() == latvalue_1d.numElements() && !lonlatValueExisted) |
---|
1423 | { |
---|
1424 | lonvalue.reference(lonvalue_1d.copy()); |
---|
1425 | latvalue.reference(latvalue_1d.copy()); |
---|
1426 | if (hasBounds) |
---|
1427 | { |
---|
1428 | bounds_lonvalue.reference(bounds_lon_1d.copy()); |
---|
1429 | bounds_latvalue.reference(bounds_lat_1d.copy()); |
---|
1430 | } |
---|
1431 | } |
---|
1432 | else |
---|
1433 | ERROR("CDomain::completeLonClient(void)", |
---|
1434 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1435 | << "'lonvalue_1d' and 'latvalue_1d' does not have the same size as the local domain." << std::endl |
---|
1436 | << "'lonvalue_1d' size is " << lonvalue_1d.numElements() |
---|
1437 | << " and 'latvalue_1d' size is " << latvalue_1d.numElements() << std::endl |
---|
1438 | << " They should be correspondingly " << ni.getValue() << " and " << nj.getValue() << " or " << std::endl |
---|
1439 | << i_index.numElements() << " and " << j_index.numElements() << "."); |
---|
1440 | } |
---|
1441 | else if (type == type_attr::curvilinear || type == type_attr::unstructured && !lonlatValueExisted) |
---|
1442 | { |
---|
1443 | lonvalue.reference(lonvalue_1d.copy()); |
---|
1444 | latvalue.reference(latvalue_1d.copy()); |
---|
1445 | if (hasBounds) |
---|
1446 | { |
---|
1447 | bounds_lonvalue.reference(bounds_lon_1d.copy()); |
---|
1448 | bounds_latvalue.reference(bounds_lat_1d.copy()); |
---|
1449 | } |
---|
1450 | } |
---|
1451 | } |
---|
1452 | |
---|
1453 | if (!area_2d.isEmpty() && areavalue.isEmpty()) |
---|
1454 | { |
---|
1455 | areavalue.resize(ni*nj); |
---|
1456 | for (int j = 0; j < nj; ++j) |
---|
1457 | { |
---|
1458 | for (int i = 0; i < ni; ++i) |
---|
1459 | { |
---|
1460 | int k = j * ni + i; |
---|
1461 | areavalue(k) = area_2d(i,j); |
---|
1462 | } |
---|
1463 | } |
---|
1464 | } |
---|
1465 | else if (!area_1d.isEmpty() && areavalue.isEmpty()) areavalue.reference(area_1d.copy()); |
---|
1466 | |
---|
1467 | } |
---|
1468 | CATCH_DUMP_ATTR |
---|
1469 | |
---|
1470 | /* |
---|
1471 | Convert internal longitude latitude value used by XIOS to "lonvalue_*" which can be retrieved with Fortran interface |
---|
1472 | */ |
---|
1473 | void CDomain::convertLonLatValue(void) |
---|
1474 | TRY |
---|
1475 | { |
---|
1476 | bool lonlatValueExisted = (0 != lonvalue.numElements()) || (0 != latvalue.numElements()); |
---|
1477 | if (!lonvalue_2d.isEmpty() && lonlatValueExisted) |
---|
1478 | { |
---|
1479 | lonvalue_2d.resize(ni,nj); |
---|
1480 | latvalue_2d.resize(ni,nj); |
---|
1481 | if (hasBounds) |
---|
1482 | { |
---|
1483 | bounds_lon_2d.resize(nvertex, ni, nj); |
---|
1484 | bounds_lat_2d.resize(nvertex, ni, nj); |
---|
1485 | } |
---|
1486 | |
---|
1487 | for (int j = 0; j < nj; ++j) |
---|
1488 | { |
---|
1489 | for (int i = 0; i < ni; ++i) |
---|
1490 | { |
---|
1491 | int k = j * ni + i; |
---|
1492 | |
---|
1493 | lonvalue_2d(i,j) = lonvalue(k); |
---|
1494 | latvalue_2d(i,j) = latvalue(k); |
---|
1495 | |
---|
1496 | if (hasBounds) |
---|
1497 | { |
---|
1498 | for (int n = 0; n < nvertex; ++n) |
---|
1499 | { |
---|
1500 | bounds_lon_2d(n,i,j) = bounds_lonvalue(n,k); |
---|
1501 | bounds_lat_2d(n,i,j) = bounds_latvalue(n,k); |
---|
1502 | } |
---|
1503 | } |
---|
1504 | } |
---|
1505 | } |
---|
1506 | } |
---|
1507 | else if (!lonvalue_1d.isEmpty() && lonlatValueExisted) |
---|
1508 | { |
---|
1509 | if (type_attr::rectilinear == type) |
---|
1510 | { |
---|
1511 | if (ni == lonvalue_1d.numElements() && nj == latvalue_1d.numElements()) |
---|
1512 | { |
---|
1513 | lonvalue.resize(ni * nj); |
---|
1514 | latvalue.resize(ni * nj); |
---|
1515 | if (hasBounds) |
---|
1516 | { |
---|
1517 | bounds_lonvalue.resize(nvertex, ni * nj); |
---|
1518 | bounds_latvalue.resize(nvertex, ni * nj); |
---|
1519 | } |
---|
1520 | |
---|
1521 | for (int j = 0; j < nj; ++j) |
---|
1522 | { |
---|
1523 | for (int i = 0; i < ni; ++i) |
---|
1524 | { |
---|
1525 | int k = j * ni + i; |
---|
1526 | |
---|
1527 | lonvalue(k) = lonvalue_1d(i); |
---|
1528 | latvalue(k) = latvalue_1d(j); |
---|
1529 | |
---|
1530 | if (hasBounds) |
---|
1531 | { |
---|
1532 | for (int n = 0; n < nvertex; ++n) |
---|
1533 | { |
---|
1534 | bounds_lonvalue(n,k) = bounds_lon_1d(n,i); |
---|
1535 | bounds_latvalue(n,k) = bounds_lat_1d(n,j); |
---|
1536 | } |
---|
1537 | } |
---|
1538 | } |
---|
1539 | } |
---|
1540 | } |
---|
1541 | else if (i_index.numElements() == lonvalue_1d.numElements() && j_index.numElements() == latvalue_1d.numElements() && !lonlatValueExisted) |
---|
1542 | { |
---|
1543 | lonvalue.reference(lonvalue_1d); |
---|
1544 | latvalue.reference(latvalue_1d); |
---|
1545 | if (hasBounds) |
---|
1546 | { |
---|
1547 | bounds_lonvalue.reference(bounds_lon_1d); |
---|
1548 | bounds_latvalue.reference(bounds_lat_1d); |
---|
1549 | } |
---|
1550 | } |
---|
1551 | else |
---|
1552 | ERROR("CDomain::completeLonClient(void)", |
---|
1553 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1554 | << "'lonvalue_1d' and 'latvalue_1d' does not have the same size as the local domain." << std::endl |
---|
1555 | << "'lonvalue_1d' size is " << lonvalue_1d.numElements() |
---|
1556 | << " and 'latvalue_1d' size is " << latvalue_1d.numElements() << std::endl |
---|
1557 | << " They should be correspondingly " << ni.getValue() << " and " << nj.getValue() << " or " << std::endl |
---|
1558 | << i_index.numElements() << " and " << j_index.numElements() << "."); |
---|
1559 | } |
---|
1560 | else if (type == type_attr::curvilinear || type == type_attr::unstructured && !lonlatValueExisted) |
---|
1561 | { |
---|
1562 | lonvalue.reference(lonvalue_1d); |
---|
1563 | latvalue.reference(latvalue_1d); |
---|
1564 | if (hasBounds) |
---|
1565 | { |
---|
1566 | bounds_lonvalue.reference(bounds_lon_1d); |
---|
1567 | bounds_latvalue.reference(bounds_lat_1d); |
---|
1568 | } |
---|
1569 | } |
---|
1570 | } |
---|
1571 | } |
---|
1572 | CATCH_DUMP_ATTR |
---|
1573 | |
---|
1574 | void CDomain::checkBounds(void) |
---|
1575 | TRY |
---|
1576 | { |
---|
1577 | bool hasBoundValues = (0 != bounds_lonvalue.numElements()) || (0 != bounds_latvalue.numElements()); |
---|
1578 | if (!nvertex.isEmpty() && nvertex > 0 && !hasBoundValues) |
---|
1579 | { |
---|
1580 | if (!bounds_lon_1d.isEmpty() && !bounds_lon_2d.isEmpty()) |
---|
1581 | ERROR("CDomain::checkBounds(void)", |
---|
1582 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1583 | << "Only one longitude boundary attribute can be used but both 'bounds_lon_1d' and 'bounds_lon_2d' are defined." << std::endl |
---|
1584 | << "Define only one longitude boundary attribute: 'bounds_lon_1d' or 'bounds_lon_2d'."); |
---|
1585 | |
---|
1586 | if (!bounds_lat_1d.isEmpty() && !bounds_lat_2d.isEmpty()) |
---|
1587 | ERROR("CDomain::checkBounds(void)", |
---|
1588 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1589 | << "Only one latitude boundary attribute can be used but both 'bounds_lat_1d' and 'bounds_lat_2d' are defined." << std::endl |
---|
1590 | << "Define only one latitude boundary attribute: 'bounds_lat_1d' or 'bounds_lat_2d'."); |
---|
1591 | |
---|
1592 | if ((!bounds_lon_1d.isEmpty() && bounds_lat_1d.isEmpty()) || (bounds_lon_1d.isEmpty() && !bounds_lat_1d.isEmpty())) |
---|
1593 | { |
---|
1594 | ERROR("CDomain::checkBounds(void)", |
---|
1595 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1596 | << "Only 'bounds_lon_1d' or 'bounds_lat_1d' is defined." << std::endl |
---|
1597 | << "Please define either both attributes or none."); |
---|
1598 | } |
---|
1599 | |
---|
1600 | if ((!bounds_lon_2d.isEmpty() && bounds_lat_2d.isEmpty()) || (bounds_lon_2d.isEmpty() && !bounds_lat_2d.isEmpty())) |
---|
1601 | { |
---|
1602 | ERROR("CDomain::checkBounds(void)", |
---|
1603 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1604 | << "Only 'bounds_lon_2d' or 'bounds_lat_2d' is defined." << std::endl |
---|
1605 | << "Please define either both attributes or none."); |
---|
1606 | } |
---|
1607 | |
---|
1608 | if (!bounds_lon_1d.isEmpty() && nvertex.getValue() != bounds_lon_1d.extent(0)) |
---|
1609 | ERROR("CDomain::checkBounds(void)", |
---|
1610 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1611 | << "'bounds_lon_1d' dimension is not compatible with 'nvertex'." << std::endl |
---|
1612 | << "'bounds_lon_1d' dimension is " << bounds_lon_1d.extent(0) |
---|
1613 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
1614 | |
---|
1615 | if (!bounds_lon_2d.isEmpty() && nvertex.getValue() != bounds_lon_2d.extent(0)) |
---|
1616 | ERROR("CDomain::checkBounds(void)", |
---|
1617 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1618 | << "'bounds_lon_2d' dimension is not compatible with 'nvertex'." << std::endl |
---|
1619 | << "'bounds_lon_2d' dimension is " << bounds_lon_2d.extent(0) |
---|
1620 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
1621 | |
---|
1622 | if (!bounds_lon_1d.isEmpty() && lonvalue_1d.isEmpty()) |
---|
1623 | ERROR("CDomain::checkBounds(void)", |
---|
1624 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1625 | << "Since 'bounds_lon_1d' is defined, 'lonvalue_1d' must be defined too." << std::endl); |
---|
1626 | |
---|
1627 | if (!bounds_lon_2d.isEmpty() && lonvalue_2d.isEmpty()) |
---|
1628 | ERROR("CDomain::checkBounds(void)", |
---|
1629 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1630 | << "Since 'bounds_lon_2d' is defined, 'lonvalue_2d' must be defined too." << std::endl); |
---|
1631 | |
---|
1632 | if (!bounds_lat_1d.isEmpty() && nvertex.getValue() != bounds_lat_1d.extent(0)) |
---|
1633 | ERROR("CDomain::checkBounds(void)", |
---|
1634 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1635 | << "'bounds_lat_1d' dimension is not compatible with 'nvertex'." << std::endl |
---|
1636 | << "'bounds_lat_1d' dimension is " << bounds_lat_1d.extent(0) |
---|
1637 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
1638 | |
---|
1639 | if (!bounds_lat_2d.isEmpty() && nvertex.getValue() != bounds_lat_2d.extent(0)) |
---|
1640 | ERROR("CDomain::checkBounds(void)", |
---|
1641 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1642 | << "'bounds_lat_2d' dimension is not compatible with 'nvertex'." << std::endl |
---|
1643 | << "'bounds_lat_2d' dimension is " << bounds_lat_2d.extent(0) |
---|
1644 | << " but nvertex is " << nvertex.getValue() << "."); |
---|
1645 | |
---|
1646 | if (!bounds_lat_1d.isEmpty() && latvalue_1d.isEmpty()) |
---|
1647 | ERROR("CDomain::checkBounds(void)", |
---|
1648 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1649 | << "Since 'bounds_lat_1d' is defined, 'latvalue_1d' must be defined too." << std::endl); |
---|
1650 | |
---|
1651 | if (!bounds_lat_2d.isEmpty() && latvalue_2d.isEmpty()) |
---|
1652 | ERROR("CDomain::checkBounds(void)", |
---|
1653 | << "Since 'bounds_lat_2d' is defined, 'latvalue_2d' must be defined too." << std::endl); |
---|
1654 | |
---|
1655 | // In case of reading UGRID bounds values are not required |
---|
1656 | hasBounds = (!bounds_lat_1d.isEmpty() || !bounds_lat_2d.isEmpty() ); |
---|
1657 | } |
---|
1658 | else if (hasBoundValues) |
---|
1659 | { |
---|
1660 | hasBounds = true; |
---|
1661 | } |
---|
1662 | else |
---|
1663 | { |
---|
1664 | hasBounds = false; |
---|
1665 | } |
---|
1666 | } |
---|
1667 | CATCH_DUMP_ATTR |
---|
1668 | |
---|
1669 | void CDomain::checkArea(void) |
---|
1670 | TRY |
---|
1671 | { |
---|
1672 | bool hasAreaValue = (!areavalue.isEmpty() && 0 != areavalue.numElements()); |
---|
1673 | hasArea = !area_1d.isEmpty() || !area_2d.isEmpty(); |
---|
1674 | if (hasArea && !hasAreaValue) |
---|
1675 | { |
---|
1676 | if (!area_2d.isEmpty() && (area_2d.extent(0) != ni || area_2d.extent(1) != nj)) |
---|
1677 | { |
---|
1678 | ERROR("CDomain::checkArea(void)", |
---|
1679 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1680 | << "The area does not have the same size as the local domain." << std::endl |
---|
1681 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
1682 | << "Area size is " << area_2d.extent(0) << " x " << area_2d.extent(1) << "."); |
---|
1683 | } |
---|
1684 | |
---|
1685 | if (!area_1d.isEmpty() && area_1d.extent(0) != ni*nj) |
---|
1686 | { |
---|
1687 | ERROR("CDomain::checkArea(void)", |
---|
1688 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1689 | << "The area does not have the same size as the local domain." << std::endl |
---|
1690 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
1691 | << "Area size is " << area_1d.extent(0) << " but must be ni*nj=" << ni*nj << " ."); |
---|
1692 | } |
---|
1693 | |
---|
1694 | } |
---|
1695 | } |
---|
1696 | CATCH_DUMP_ATTR |
---|
1697 | |
---|
1698 | void CDomain::checkLonLat() |
---|
1699 | TRY |
---|
1700 | { |
---|
1701 | if (!hasLonLat) hasLonLat = (!latvalue_1d.isEmpty() && !lonvalue_1d.isEmpty()) || |
---|
1702 | (!latvalue_2d.isEmpty() && !lonvalue_2d.isEmpty()); |
---|
1703 | bool hasLonLatValue = (0 != lonvalue.numElements()) || (0 != latvalue.numElements()); |
---|
1704 | if (hasLonLat && !hasLonLatValue) |
---|
1705 | { |
---|
1706 | if (!lonvalue_1d.isEmpty() && !lonvalue_2d.isEmpty()) |
---|
1707 | ERROR("CDomain::checkLonLat()", |
---|
1708 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1709 | << "Only one longitude attribute can be used but both 'lonvalue_1d' and 'lonvalue_2d' are defined." << std::endl |
---|
1710 | << "Define only one longitude attribute: 'lonvalue_1d' or 'lonvalue_2d'."); |
---|
1711 | |
---|
1712 | if (!lonvalue_1d.isEmpty() && lonvalue_2d.isEmpty()) |
---|
1713 | { |
---|
1714 | if ((type_attr::rectilinear != type) && (lonvalue_1d.numElements() != i_index.numElements())) |
---|
1715 | ERROR("CDomain::checkLonLat()", |
---|
1716 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1717 | << "'lonvalue_1d' does not have the same size as the local domain." << std::endl |
---|
1718 | << "Local size is " << i_index.numElements() << "." << std::endl |
---|
1719 | << "'lonvalue_1d' size is " << lonvalue_1d.numElements() << "."); |
---|
1720 | } |
---|
1721 | |
---|
1722 | if (lonvalue_1d.isEmpty() && !lonvalue_2d.isEmpty()) |
---|
1723 | { |
---|
1724 | if (lonvalue_2d.extent(0) != ni || lonvalue_2d.extent(1) != nj) |
---|
1725 | ERROR("CDomain::checkLonLat()", |
---|
1726 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1727 | << "'lonvalue_2d' does not have the same size as the local domain." << std::endl |
---|
1728 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
1729 | << "'lonvalue_2d' size is " << lonvalue_2d.extent(0) << " x " << lonvalue_2d.extent(1) << "."); |
---|
1730 | } |
---|
1731 | |
---|
1732 | if (!latvalue_1d.isEmpty() && !latvalue_2d.isEmpty()) |
---|
1733 | ERROR("CDomain::checkLonLat()", |
---|
1734 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1735 | << "Only one latitude attribute can be used but both 'latvalue_1d' and 'latvalue_2d' are defined." << std::endl |
---|
1736 | << "Define only one latitude attribute: 'latvalue_1d' or 'latvalue_2d'."); |
---|
1737 | |
---|
1738 | if (!latvalue_1d.isEmpty() && latvalue_2d.isEmpty()) |
---|
1739 | { |
---|
1740 | if ((type_attr::rectilinear != type) && (latvalue_1d.numElements() != i_index.numElements())) |
---|
1741 | ERROR("CDomain::checkLonLat()", |
---|
1742 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1743 | << "'latvalue_1d' does not have the same size as the local domain." << std::endl |
---|
1744 | << "Local size is " << i_index.numElements() << "." << std::endl |
---|
1745 | << "'latvalue_1d' size is " << latvalue_1d.numElements() << "."); |
---|
1746 | } |
---|
1747 | |
---|
1748 | if (latvalue_1d.isEmpty() && !latvalue_2d.isEmpty()) |
---|
1749 | { |
---|
1750 | if (latvalue_2d.extent(0) != ni || latvalue_2d.extent(1) != nj) |
---|
1751 | ERROR("CDomain::checkLonLat()", |
---|
1752 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
1753 | << "'latvalue_2d' does not have the same size as the local domain." << std::endl |
---|
1754 | << "Local size is " << ni.getValue() << " x " << nj.getValue() << "." << std::endl |
---|
1755 | << "'latvalue_2d' size is " << latvalue_2d.extent(0) << " x " << latvalue_2d.extent(1) << "."); |
---|
1756 | } |
---|
1757 | } |
---|
1758 | } |
---|
1759 | CATCH_DUMP_ATTR |
---|
1760 | |
---|
1761 | void CDomain::checkAttributes(void) |
---|
1762 | TRY |
---|
1763 | { |
---|
1764 | if (this->checkAttributes_done_) return; |
---|
1765 | this->checkDomain(); |
---|
1766 | this->compute2dBox() ; |
---|
1767 | this->checkLonLat(); |
---|
1768 | this->checkBounds(); |
---|
1769 | this->checkArea(); |
---|
1770 | this->checkMask(); |
---|
1771 | this->checkDomainData(); |
---|
1772 | this->checkCompression(); |
---|
1773 | this->computeLocalMask() ; |
---|
1774 | this->completeLonLatClient(); |
---|
1775 | this->initializeLocalElement() ; |
---|
1776 | this->addFullView() ; // probably do not automatically add View, but only if requested |
---|
1777 | this->addWorkflowView() ; // probably do not automatically add View, but only if requested |
---|
1778 | this->addModelView() ; // probably do not automatically add View, but only if requested |
---|
1779 | // testing ? |
---|
1780 | /* |
---|
1781 | shared_ptr<CLocalView> local = localElement_->getView(CElementView::WORKFLOW) ; |
---|
1782 | shared_ptr<CLocalView> model = localElement_->getView(CElementView::MODEL) ; |
---|
1783 | |
---|
1784 | CLocalConnector test1(model, local) ; |
---|
1785 | test1.computeConnector() ; |
---|
1786 | CLocalConnector test2(local, model) ; |
---|
1787 | test2.computeConnector() ; |
---|
1788 | CGridLocalConnector gridTest1(vector<CLocalConnector*>{&test1}) ; |
---|
1789 | CGridLocalConnector gridTest2(vector<CLocalConnector*>{&test2}) ; |
---|
1790 | |
---|
1791 | |
---|
1792 | CArray<int,1> out1 ; |
---|
1793 | CArray<int,1> out2 ; |
---|
1794 | test1.transfer(data_i_index,out1,-111) ; |
---|
1795 | test2.transfer(out1,out2,-111) ; |
---|
1796 | |
---|
1797 | out1 = 0 ; |
---|
1798 | out2 = 0 ; |
---|
1799 | gridTest1.transfer(data_i_index,out1,-111) ; |
---|
1800 | gridTest2.transfer(out1, out2,-111) ; |
---|
1801 | */ |
---|
1802 | this->checkAttributes_done_ = true; |
---|
1803 | } |
---|
1804 | CATCH_DUMP_ATTR |
---|
1805 | |
---|
1806 | size_t CDomain::computeAttributesHash( MPI_Comm comm ) |
---|
1807 | { |
---|
1808 | // Compute the hash of distributed attributs (value ...) |
---|
1809 | int globalSize = this->ni_glo.getValue()*this->nj_glo.getValue(); |
---|
1810 | CArray<size_t,1> globalIndex; // No redundancy globalIndex will be computed with the connector |
---|
1811 | shared_ptr<CGridTransformConnector> gridTransformConnector; |
---|
1812 | // Compute a without redundancy element FULL view to enable a consistent hash computation |
---|
1813 | this->getLocalView(CElementView::FULL)->createWithoutRedundancyFullViewConnector( globalSize, comm, gridTransformConnector, globalIndex ); |
---|
1814 | int localSize = globalIndex.numElements(); |
---|
1815 | |
---|
1816 | CArray<double,1> lon_distributedValue, lat_distributedValue ; |
---|
1817 | gridTransformConnector->transfer(this->lonvalue, lon_distributedValue ); |
---|
1818 | gridTransformConnector->transfer(this->latvalue, lat_distributedValue ); |
---|
1819 | |
---|
1820 | // Compute the distributed hash (v0) of the element |
---|
1821 | // it will be associated to the default element name (= map key), and to the name really written |
---|
1822 | size_t localHash = 0; |
---|
1823 | for (int iloc=0; iloc<localSize ; iloc++ ) localHash+=globalIndex(iloc)*lon_distributedValue(iloc)*lat_distributedValue(iloc); |
---|
1824 | size_t distributedHash = 0; |
---|
1825 | MPI_Allreduce( &localHash, &distributedHash, 1, MPI_UNSIGNED_LONG, MPI_SUM, comm ); |
---|
1826 | |
---|
1827 | // Compute the hash of global attributs (unit, prec ...) |
---|
1828 | vector<StdString> excludedAttr; |
---|
1829 | //excludedAttr.push_back("name"); |
---|
1830 | // internal attributs |
---|
1831 | excludedAttr.insert(excludedAttr.end(), { "ibegin", "jbegin", "ni", "nj", "i_index", "j_index" }); |
---|
1832 | excludedAttr.insert(excludedAttr.end(), { "data_ni", "data_nj", "data_ibegin", "data_jbegin" }); |
---|
1833 | excludedAttr.insert(excludedAttr.end(), { "data_i_index", "data_j_index", "domain_ref" }); |
---|
1834 | // in distributed through lonvalue and latvalue |
---|
1835 | excludedAttr.insert(excludedAttr.end(), { "lonvalue_1d", "latvalue_1d", "lonvalue_2d", "latvalue_2d" }); |
---|
1836 | // should be considered in distributed |
---|
1837 | excludedAttr.insert(excludedAttr.end(), { "mask_1d", "mask_2d" }); // ??? |
---|
1838 | excludedAttr.insert(excludedAttr.end(), { "bounds_lon_1d", "bounds_lat_1d", "bounds_lon_2d", "bounds_lat_2d" }); |
---|
1839 | excludedAttr.insert(excludedAttr.end(), { "area_1d", "area_2d" }); |
---|
1840 | // private |
---|
1841 | excludedAttr.insert(excludedAttr.end(), { "lon_start", "lon_end", "lat_start", "lat_end" }); |
---|
1842 | excludedAttr.insert(excludedAttr.end(), { "bounds_lon_start", "bounds_lon_end", "bounds_lat_start", "bounds_lat_end" }); |
---|
1843 | excludedAttr.insert(excludedAttr.end(), { "has_lat_in_read_file", "has_lon_in_read_file", "has_bounds_lat_in_read_file", "has_bounds_lon_in_read_file" }); |
---|
1844 | excludedAttr.insert(excludedAttr.end(), { "lonvalue_rectilinear_read_from_file", "latvalue_rectilinear_read_from_file", "lonvalue_curvilinear_read_from_file", "latvalue_curvilinear_read_from_file" }); |
---|
1845 | excludedAttr.insert(excludedAttr.end(), { "bounds_lonvalue_curvilinear_read_from_file", "bounds_latvalue_curvilinear_read_from_file", "lonvalue_unstructured_read_from_file", "latvalue_unstructured_read_from_file" }); |
---|
1846 | excludedAttr.insert(excludedAttr.end(), { "bounds_lonvalue_unstructured_read_from_file", "bounds_latvalue_unstructured_read_from_file" }); |
---|
1847 | |
---|
1848 | size_t globalHash = this->computeGlobalAttributesHash( excludedAttr ); |
---|
1849 | |
---|
1850 | return distributedHash + globalHash; |
---|
1851 | } |
---|
1852 | |
---|
1853 | void CDomain::renameAttributesBeforeWriting(CDomain* writtenDomain) |
---|
1854 | { |
---|
1855 | if (writtenDomain!=NULL) |
---|
1856 | { |
---|
1857 | this->name = writtenDomain->getDomainOutputName(); |
---|
1858 | this->lon_name = writtenDomain->lon_name; |
---|
1859 | this->lat_name = writtenDomain->lat_name; |
---|
1860 | if (this->type == CDomain::type_attr::unstructured) |
---|
1861 | { |
---|
1862 | this->dim_i_name = writtenDomain->dim_i_name; |
---|
1863 | this->nvertex_name = writtenDomain->nvertex_name; |
---|
1864 | } |
---|
1865 | } |
---|
1866 | else |
---|
1867 | { |
---|
1868 | this->name = this->getId(); |
---|
1869 | this->lon_name = "lon_"+this->getId(); |
---|
1870 | this->lat_name = "lat_"+this->getId(); |
---|
1871 | if (this->type == CDomain::type_attr::unstructured) |
---|
1872 | { |
---|
1873 | this->dim_i_name = "cell_"+this->getId(); |
---|
1874 | this->nvertex_name = "nvertex_"+this->getId(); |
---|
1875 | } |
---|
1876 | } |
---|
1877 | } |
---|
1878 | |
---|
1879 | void CDomain::initializeLocalElement(void) |
---|
1880 | { |
---|
1881 | // after checkDomain i_index and j_index of size (ni*nj) |
---|
1882 | int nij = ni*nj ; |
---|
1883 | CArray<size_t, 1> ij_index(ni*nj) ; |
---|
1884 | for(int ij=0; ij<nij ; ij++) ij_index(ij) = i_index(ij)+j_index(ij)*ni_glo ; |
---|
1885 | int rank = CContext::getCurrent()->getIntraCommRank() ; |
---|
1886 | localElement_ = make_shared<CLocalElement>(rank, ni_glo*nj_glo, ij_index) ; |
---|
1887 | } |
---|
1888 | |
---|
1889 | void CDomain::addFullView(void) |
---|
1890 | { |
---|
1891 | CArray<int,1> index(ni*nj) ; |
---|
1892 | int nij=ni*nj ; |
---|
1893 | for(int ij=0; ij<nij ; ij++) index(ij)=ij ; |
---|
1894 | localElement_ -> addView(CElementView::FULL, index) ; |
---|
1895 | } |
---|
1896 | |
---|
1897 | void CDomain::addWorkflowView(void) |
---|
1898 | { |
---|
1899 | // information for workflow view is stored in localMask |
---|
1900 | int nij=ni*nj ; |
---|
1901 | int nMask=0 ; |
---|
1902 | for(int ij=0; ij<nij ; ij++) if (localMask(ij)) nMask++ ; |
---|
1903 | CArray<int,1> index(nMask) ; |
---|
1904 | |
---|
1905 | nMask=0 ; |
---|
1906 | for(int ij=0; ij<nij ; ij++) |
---|
1907 | if (localMask(ij)) |
---|
1908 | { |
---|
1909 | index(nMask)=ij ; |
---|
1910 | nMask++ ; |
---|
1911 | } |
---|
1912 | localElement_ -> addView(CElementView::WORKFLOW, index) ; |
---|
1913 | } |
---|
1914 | |
---|
1915 | void CDomain::addModelView(void) |
---|
1916 | { |
---|
1917 | // information for model view is stored in data_i_index/data_j_index |
---|
1918 | // very weird, do not mix data_i_index and data_i_begin => in future only keep data_i_index |
---|
1919 | int dataSize = data_i_index.numElements() ; |
---|
1920 | CArray<int,1> index(dataSize) ; |
---|
1921 | int i,j ; |
---|
1922 | for(int k=0;k<dataSize;k++) |
---|
1923 | { |
---|
1924 | if (data_dim==2) |
---|
1925 | { |
---|
1926 | i=data_i_index(k)+data_ibegin ; // bad |
---|
1927 | j=data_j_index(k)+data_jbegin ; // bad |
---|
1928 | if (i>=0 && i<ni && j>=0 && j<nj) index(k)=i+j*ni ; |
---|
1929 | else index(k)=-1 ; |
---|
1930 | } |
---|
1931 | else if (data_dim==1) |
---|
1932 | { |
---|
1933 | i=data_i_index(k)+data_ibegin ; // bad |
---|
1934 | if (i>=0 && i<ni*nj) index(k)=i ; |
---|
1935 | else index(k)=-1 ; |
---|
1936 | } |
---|
1937 | } |
---|
1938 | localElement_->addView(CElementView::MODEL, index) ; |
---|
1939 | } |
---|
1940 | |
---|
1941 | void CDomain::computeModelToWorkflowConnector(void) |
---|
1942 | { |
---|
1943 | shared_ptr<CLocalView> srcView=getLocalView(CElementView::MODEL) ; |
---|
1944 | shared_ptr<CLocalView> dstView=getLocalView(CElementView::WORKFLOW) ; |
---|
1945 | modelToWorkflowConnector_ = make_shared<CLocalConnector>(srcView, dstView); |
---|
1946 | modelToWorkflowConnector_->computeConnector() ; |
---|
1947 | } |
---|
1948 | |
---|
1949 | |
---|
1950 | string CDomain::getCouplingAlias(const string& fieldId, int posInGrid) |
---|
1951 | { |
---|
1952 | return "_domain["+std::to_string(posInGrid)+"]_of_"+fieldId ; |
---|
1953 | } |
---|
1954 | |
---|
1955 | /* to be removed later when coupling will be reimplemented, just to not forget */ |
---|
1956 | void CDomain::sendDomainToCouplerOut(CContextClient* client, const string& fieldId, int posInGrid) |
---|
1957 | { |
---|
1958 | if (sendDomainToFileServer_done_.count(client)!=0) return ; |
---|
1959 | else sendDomainToFileServer_done_.insert(client) ; |
---|
1960 | |
---|
1961 | const string domainId = getCouplingAlias(fieldId, posInGrid) ; |
---|
1962 | |
---|
1963 | if (!domain_ref.isEmpty()) |
---|
1964 | { |
---|
1965 | auto domain_ref_tmp=domain_ref.getValue() ; |
---|
1966 | domain_ref.reset() ; // remove the reference, find an other way to do that more cleanly |
---|
1967 | this->sendAllAttributesToServer(client, domainId) ; |
---|
1968 | domain_ref = domain_ref_tmp ; |
---|
1969 | } |
---|
1970 | else this->sendAllAttributesToServer(client, domainId) ; |
---|
1971 | } |
---|
1972 | |
---|
1973 | |
---|
1974 | |
---|
1975 | |
---|
1976 | void CDomain::makeAliasForCoupling(const string& fieldId, int posInGrid) |
---|
1977 | { |
---|
1978 | const string domainId = getCouplingAlias(fieldId, posInGrid); |
---|
1979 | this->createAlias(domainId) ; |
---|
1980 | } |
---|
1981 | |
---|
1982 | |
---|
1983 | void CDomain::computeRemoteElement(CContextClient* client, EDistributionType distType) |
---|
1984 | TRY |
---|
1985 | { |
---|
1986 | CContext* context = CContext::getCurrent(); |
---|
1987 | map<int, CArray<size_t,1>> globalIndex ; |
---|
1988 | |
---|
1989 | if (distType==EDistributionType::BANDS && isUnstructed_) distType=EDistributionType::COLUMNS ; |
---|
1990 | |
---|
1991 | if (distType==EDistributionType::BANDS) // Bands distribution to send to file server |
---|
1992 | { |
---|
1993 | int nbServer = client->getRemoteSize(); |
---|
1994 | int nbClient = client->getIntraCommSize() ; |
---|
1995 | int rankClient = client->getIntraCommRank() ; |
---|
1996 | |
---|
1997 | int nbChunk = max( nbServer, nbClient); |
---|
1998 | int size ;//= nbChunk / nbClient ; |
---|
1999 | int start ; |
---|
2000 | |
---|
2001 | if (nbServer<=nbClient) // nbChunk = nbClient |
---|
2002 | { |
---|
2003 | // distribution regarding client only : 1 chunk per client, one server can recv from many clients (see serverRank below) |
---|
2004 | size = 1; |
---|
2005 | start = rankClient; |
---|
2006 | } |
---|
2007 | else // nbChunk = nbServer |
---|
2008 | { |
---|
2009 | // distribution regarding servers : 1 client with size(+1) chunk will send to size(+1) servers |
---|
2010 | size = nbChunk/nbClient; |
---|
2011 | int nClientWithAdditionalChunk = nbChunk - size*nbClient; |
---|
2012 | if (rankClient<nClientWithAdditionalChunk) // distribute size+1 chunks per client |
---|
2013 | { |
---|
2014 | size++; |
---|
2015 | start = size*rankClient; |
---|
2016 | } |
---|
2017 | else // distribute the rest with size chunks |
---|
2018 | { |
---|
2019 | start = (size+1)*nClientWithAdditionalChunk+size*(rankClient-nClientWithAdditionalChunk); |
---|
2020 | } |
---|
2021 | } |
---|
2022 | |
---|
2023 | for(int i=0; i<size; i++) |
---|
2024 | { |
---|
2025 | int rank=start+i ; |
---|
2026 | size_t indSize = nj_glo/nbChunk ; |
---|
2027 | size_t indStart ; |
---|
2028 | if (nj_glo % nbChunk > rank) |
---|
2029 | { |
---|
2030 | indStart = (indSize+1) * rank ; |
---|
2031 | indSize++ ; |
---|
2032 | } |
---|
2033 | else indStart = indSize*rank + nj_glo%nbChunk ; |
---|
2034 | |
---|
2035 | indStart=indStart*ni_glo ; |
---|
2036 | indSize=indSize*ni_glo ; |
---|
2037 | // compute the server rank concerns by the chunk |
---|
2038 | int serverRank; |
---|
2039 | if (nbServer<=nbClient) |
---|
2040 | { |
---|
2041 | // nChunkPerServer(+1) client will send to 1 server |
---|
2042 | if (nj_glo<nbChunk) |
---|
2043 | nbChunk=nj_glo; |
---|
2044 | int nChunkPerServer = nbChunk/nbServer; |
---|
2045 | int nServerWithAdditionalChunk = nbChunk - nChunkPerServer*nbServer; |
---|
2046 | if (rankClient<nServerWithAdditionalChunk*(nChunkPerServer+1)) |
---|
2047 | { |
---|
2048 | serverRank = rank/(nChunkPerServer+1); |
---|
2049 | } |
---|
2050 | else |
---|
2051 | { |
---|
2052 | // nServerWithAdditionalChunk servers have been affected above with (nChunkPerServer+1) chunks |
---|
2053 | // the rest will recv nChunkPerServer |
---|
2054 | if (nChunkPerServer>0) |
---|
2055 | { |
---|
2056 | serverRank = nServerWithAdditionalChunk+(rank-nServerWithAdditionalChunk*(nChunkPerServer+1))/nChunkPerServer; |
---|
2057 | } |
---|
2058 | else |
---|
2059 | { |
---|
2060 | // no chunk for all servers, current rank will not manage informations for this domain |
---|
2061 | serverRank = client->getRemoteSize(); |
---|
2062 | } |
---|
2063 | } |
---|
2064 | } |
---|
2065 | else // (nbServer > nbClient) |
---|
2066 | { |
---|
2067 | serverRank = rank; |
---|
2068 | } |
---|
2069 | |
---|
2070 | if (nbChunk<nbServer) |
---|
2071 | { |
---|
2072 | if ( (serverRank==client->getRemoteSize()) && (rankClient<nbServer) ) |
---|
2073 | { |
---|
2074 | indSize = 0; |
---|
2075 | serverRank = rank; |
---|
2076 | } |
---|
2077 | } |
---|
2078 | |
---|
2079 | if (serverRank<client->getRemoteSize()) |
---|
2080 | { |
---|
2081 | auto& globalInd = globalIndex[serverRank] ; |
---|
2082 | globalInd.resize(indSize) ; |
---|
2083 | for(size_t n = 0 ; n<indSize; n++) globalInd(n)=indStart+n ; |
---|
2084 | } |
---|
2085 | } |
---|
2086 | } |
---|
2087 | else if (distType==EDistributionType::COLUMNS) // Bands distribution to send to file server |
---|
2088 | { |
---|
2089 | int nbServer = client->getRemoteSize(); |
---|
2090 | int nbClient = client->getIntraCommSize() ; |
---|
2091 | int rankClient = client->getIntraCommRank() ; |
---|
2092 | int size = nbServer / nbClient ; |
---|
2093 | int start ; |
---|
2094 | if (nbServer%nbClient > rankClient) |
---|
2095 | { |
---|
2096 | start = (size+1) * rankClient ; |
---|
2097 | size++ ; |
---|
2098 | } |
---|
2099 | else start = size*rankClient + nbServer%nbClient ; |
---|
2100 | |
---|
2101 | for(int i=0; i<size; i++) |
---|
2102 | { |
---|
2103 | int rank=start+i ; |
---|
2104 | size_t indSize = ni_glo/nbServer ; |
---|
2105 | size_t indStart ; |
---|
2106 | if (ni_glo % nbServer > rank) |
---|
2107 | { |
---|
2108 | indStart = (indSize+1) * rank ; |
---|
2109 | indSize++ ; |
---|
2110 | } |
---|
2111 | else indStart = indSize*rank + ni_glo%nbServer ; |
---|
2112 | |
---|
2113 | auto& globalInd = globalIndex[rank] ; |
---|
2114 | globalInd.resize(indSize*nj_glo) ; |
---|
2115 | size_t n=0 ; |
---|
2116 | for(int j=0; j<nj_glo;j++) |
---|
2117 | { |
---|
2118 | for(int i=0; i<indSize; i++, n++) globalInd(n)=indStart+i ; |
---|
2119 | indStart=indStart+ni_glo ; |
---|
2120 | } |
---|
2121 | } |
---|
2122 | } |
---|
2123 | else if (distType==EDistributionType::NONE) // domain is not distributed ie all servers get the same local domain |
---|
2124 | { |
---|
2125 | int nbServer = client->getRemoteSize(); |
---|
2126 | int nglo=ni_glo*nj_glo ; |
---|
2127 | CArray<size_t,1> indGlo ; |
---|
2128 | for(size_t i=0;i<nglo;i++) indGlo(i) = i ; |
---|
2129 | for (auto& rankServer : client->getRanksServerLeader()) globalIndex[rankServer] = indGlo ; |
---|
2130 | } |
---|
2131 | remoteElement_[client] = make_shared<CDistributedElement>(ni_glo*nj_glo, globalIndex) ; |
---|
2132 | remoteElement_[client]->addFullView() ; |
---|
2133 | } |
---|
2134 | CATCH |
---|
2135 | |
---|
2136 | void CDomain::distributeToServer(CContextClient* client, bool inOut, map<int, CArray<size_t,1>>& globalIndexOut, std::map<int, CArray<size_t,1>>& globalIndexIn, |
---|
2137 | shared_ptr<CScattererConnector> &scattererConnector, const string& domainId) |
---|
2138 | TRY |
---|
2139 | { |
---|
2140 | string serverDomainId = domainId.empty() ? this->getId() : domainId ; |
---|
2141 | CContext* context = CContext::getCurrent(); |
---|
2142 | |
---|
2143 | this->sendAllAttributesToServer(client, serverDomainId) ; |
---|
2144 | |
---|
2145 | auto scatteredElement = make_shared<CDistributedElement>(ni_glo*nj_glo, globalIndexOut) ; |
---|
2146 | scatteredElement->addFullView() ; |
---|
2147 | scattererConnector = make_shared<CScattererConnector>(localElement_->getView(CElementView::FULL), scatteredElement->getView(CElementView::FULL), |
---|
2148 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
2149 | scattererConnector->computeConnector() ; |
---|
2150 | |
---|
2151 | // phase 0 |
---|
2152 | // send remote element to construct the full view on server, ie without hole |
---|
2153 | CEventClient event0(getType(), EVENT_ID_DOMAIN_DISTRIBUTION); |
---|
2154 | CMessage message0 ; |
---|
2155 | message0<<serverDomainId<<0 ; |
---|
2156 | remoteElement_[client]->sendToServer(client,event0,message0) ; |
---|
2157 | |
---|
2158 | // phase 1 |
---|
2159 | // send the full view of element to construct the connector which connect distributed data coming from client to the full local view |
---|
2160 | CEventClient event1(getType(), EVENT_ID_DOMAIN_DISTRIBUTION); |
---|
2161 | CMessage message1 ; |
---|
2162 | message1<<serverDomainId<<1<<localElement_->getView(CElementView::FULL)->getGlobalSize() ; |
---|
2163 | scattererConnector->transfer(localElement_->getView(CElementView::FULL)->getGlobalIndex(),client,event1,message1) ; |
---|
2164 | |
---|
2165 | sendDistributedAttributes(client, scattererConnector, domainId) ; |
---|
2166 | |
---|
2167 | |
---|
2168 | // phase 2 send the mask : data index + mask2D |
---|
2169 | { |
---|
2170 | CArray<bool,1> maskIn(localElement_->getView(CElementView::WORKFLOW)->getSize()); |
---|
2171 | CArray<bool,1> maskOut ; |
---|
2172 | auto workflowToFull = make_shared<CLocalConnector>(localElement_->getView(CElementView::WORKFLOW), localElement_->getView(CElementView::FULL)) ; |
---|
2173 | workflowToFull->computeConnector() ; |
---|
2174 | maskIn=true ; |
---|
2175 | workflowToFull->transfer(maskIn,maskOut,false) ; |
---|
2176 | |
---|
2177 | |
---|
2178 | // prepare grid scatterer connector to send data from client to server |
---|
2179 | map<int,CArray<size_t,1>> workflowGlobalIndex ; |
---|
2180 | map<int,CArray<bool,1>> maskOut2 ; |
---|
2181 | scattererConnector->transfer(maskOut, maskOut2, false) ; |
---|
2182 | scatteredElement->addView(CElementView::WORKFLOW, maskOut2) ; |
---|
2183 | scatteredElement->getView(CElementView::WORKFLOW)->getGlobalIndexView(workflowGlobalIndex) ; |
---|
2184 | // create new workflow view for scattered element |
---|
2185 | auto clientToServerElement = make_shared<CDistributedElement>(scatteredElement->getGlobalSize(), workflowGlobalIndex) ; |
---|
2186 | clientToServerElement->addFullView() ; |
---|
2187 | CEventClient event2(getType(), EVENT_ID_DOMAIN_DISTRIBUTION); |
---|
2188 | CMessage message2 ; |
---|
2189 | message2<<serverDomainId<<2 ; |
---|
2190 | clientToServerElement->sendToServer(client, event2, message2) ; |
---|
2191 | clientToServerConnector_[client] = make_shared<CScattererConnector>(localElement_->getView(CElementView::WORKFLOW), clientToServerElement->getView(CElementView::FULL), |
---|
2192 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
2193 | clientToServerConnector_[client]->computeConnector() ; |
---|
2194 | } |
---|
2195 | //////////// |
---|
2196 | // phase 3 : compute connector to receive from server |
---|
2197 | //////////// |
---|
2198 | if (inOut) |
---|
2199 | { |
---|
2200 | auto scatteredElement = make_shared<CDistributedElement>(ni_glo*nj_glo, globalIndexIn) ; |
---|
2201 | scatteredElement->addFullView() ; |
---|
2202 | auto scattererConnector = make_shared<CScattererConnector>(localElement_->getView(CElementView::FULL), scatteredElement->getView(CElementView::FULL), |
---|
2203 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
2204 | scattererConnector->computeConnector() ; |
---|
2205 | |
---|
2206 | CArray<bool,1> maskIn(localElement_->getView(CElementView::WORKFLOW)->getSize()); |
---|
2207 | CArray<bool,1> maskOut ; |
---|
2208 | auto workflowToFull = make_shared<CLocalConnector>(localElement_->getView(CElementView::WORKFLOW), localElement_->getView(CElementView::FULL)) ; |
---|
2209 | workflowToFull->computeConnector() ; |
---|
2210 | maskIn=true ; |
---|
2211 | workflowToFull->transfer(maskIn,maskOut,false) ; |
---|
2212 | |
---|
2213 | map<int,CArray<size_t,1>> workflowGlobalIndex ; |
---|
2214 | map<int,CArray<bool,1>> maskOut2 ; |
---|
2215 | scattererConnector->transfer(maskOut, maskOut2, false) ; |
---|
2216 | scatteredElement->addView(CElementView::WORKFLOW, maskOut2) ; |
---|
2217 | scatteredElement->getView(CElementView::WORKFLOW)->getGlobalIndexView(workflowGlobalIndex) ; |
---|
2218 | auto clientToServerElement = make_shared<CDistributedElement>(scatteredElement->getGlobalSize(), workflowGlobalIndex) ; |
---|
2219 | clientToServerElement->addFullView() ; |
---|
2220 | CEventClient event3(getType(), EVENT_ID_DOMAIN_DISTRIBUTION); |
---|
2221 | CMessage message3 ; |
---|
2222 | message3<<serverDomainId<<3 ; |
---|
2223 | clientToServerElement->sendToServer(client, event3, message3) ; |
---|
2224 | |
---|
2225 | clientFromServerConnector_[client] = make_shared<CGathererConnector>(clientToServerElement->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)); |
---|
2226 | clientFromServerConnector_[client]->computeConnector() ; |
---|
2227 | } |
---|
2228 | } |
---|
2229 | CATCH |
---|
2230 | |
---|
2231 | void CDomain::recvDomainDistribution(CEventServer& event) |
---|
2232 | TRY |
---|
2233 | { |
---|
2234 | string domainId; |
---|
2235 | int phasis ; |
---|
2236 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> domainId >> phasis ; |
---|
2237 | get(domainId)->receivedDomainDistribution(event, phasis); |
---|
2238 | } |
---|
2239 | CATCH |
---|
2240 | |
---|
2241 | void CDomain::receivedDomainDistribution(CEventServer& event, int phasis) |
---|
2242 | TRY |
---|
2243 | { |
---|
2244 | CContext* context = CContext::getCurrent(); |
---|
2245 | if (phasis==0) // receive the remote element to construct the full view |
---|
2246 | { |
---|
2247 | localElement_ = make_shared<CLocalElement>(context->getIntraCommRank(),event) ; |
---|
2248 | localElement_->addFullView() ; |
---|
2249 | // construct the local dimension and indexes |
---|
2250 | auto& globalIndex=localElement_->getGlobalIndex() ; |
---|
2251 | int nij=globalIndex.numElements() ; |
---|
2252 | int minI=ni_glo,maxI=-1,minJ=nj_glo,maxJ=-1 ; |
---|
2253 | int i,j ; |
---|
2254 | int niGlo=ni_glo, njGlo=njGlo ; |
---|
2255 | for(int ij=0;ij<nij;ij++) |
---|
2256 | { |
---|
2257 | j=globalIndex(ij)/niGlo ; |
---|
2258 | i=globalIndex(ij)%niGlo ; |
---|
2259 | if (i<minI) minI=i ; |
---|
2260 | if (i>maxI) maxI=i ; |
---|
2261 | if (j<minJ) minJ=j ; |
---|
2262 | if (j>maxJ) maxJ=j ; |
---|
2263 | } |
---|
2264 | if (maxI>=minI) { ibegin=minI ; ni=maxI-minI+1 ; } |
---|
2265 | else {ibegin=0; ni=0 ;} |
---|
2266 | if (maxJ>=minJ) { jbegin=minJ ; nj=maxJ-minJ+1 ; } |
---|
2267 | else {jbegin=0; nj=0 ;} |
---|
2268 | |
---|
2269 | } |
---|
2270 | else if (phasis==1) // receive the sent view from client to construct the full distributed full view on server |
---|
2271 | { |
---|
2272 | CContext* context = CContext::getCurrent(); |
---|
2273 | shared_ptr<CDistributedElement> elementFrom = make_shared<CDistributedElement>(event) ; |
---|
2274 | elementFrom->addFullView() ; |
---|
2275 | gathererConnector_ = make_shared<CGathererConnector>(elementFrom->getView(CElementView::FULL), localElement_->getView(CElementView::FULL)) ; |
---|
2276 | gathererConnector_->computeConnector() ; |
---|
2277 | } |
---|
2278 | else if (phasis==2) |
---|
2279 | { |
---|
2280 | elementFrom_ = make_shared<CDistributedElement>(event) ; |
---|
2281 | elementFrom_->addFullView() ; |
---|
2282 | } |
---|
2283 | else if (phasis==3) |
---|
2284 | { |
---|
2285 | elementTo_ = make_shared<CDistributedElement>(event) ; |
---|
2286 | elementTo_->addFullView() ; |
---|
2287 | } |
---|
2288 | } |
---|
2289 | CATCH |
---|
2290 | |
---|
2291 | void CDomain::setServerMask(CArray<bool,1>& serverMask, CContextClient* client) |
---|
2292 | TRY |
---|
2293 | { |
---|
2294 | // nota : the client is needed to get the remote size for the scatterer connector. Maybe it is not the good place for this |
---|
2295 | // Later, server to client connector can be computed on demand, with "client" as argument |
---|
2296 | CContext* context = CContext::getCurrent(); |
---|
2297 | localElement_->addView(CElementView::WORKFLOW, serverMask) ; |
---|
2298 | mask_1d.reference(serverMask.copy()) ; |
---|
2299 | |
---|
2300 | serverFromClientConnector_ = make_shared<CGathererConnector>(elementFrom_->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)) ; |
---|
2301 | serverFromClientConnector_->computeConnector() ; |
---|
2302 | elementFrom_.reset() ; |
---|
2303 | |
---|
2304 | if (elementTo_) |
---|
2305 | { |
---|
2306 | serverToClientConnector_ = make_shared<CScattererConnector>(localElement_->getView(CElementView::WORKFLOW), elementTo_->getView(CElementView::FULL), |
---|
2307 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
2308 | serverToClientConnector_->computeConnector() ; |
---|
2309 | elementTo_.reset() ; |
---|
2310 | } |
---|
2311 | |
---|
2312 | } |
---|
2313 | CATCH_DUMP_ATTR |
---|
2314 | |
---|
2315 | |
---|
2316 | void CDomain::sendDistributedAttributes(CContextClient* client, shared_ptr<CScattererConnector> scattererConnector, const string& domainId) |
---|
2317 | { |
---|
2318 | string serverDomainId = domainId.empty() ? this->getId() : domainId ; |
---|
2319 | CContext* context = CContext::getCurrent(); |
---|
2320 | |
---|
2321 | if (hasLonLat) |
---|
2322 | { |
---|
2323 | { // send longitude |
---|
2324 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
2325 | CMessage message ; |
---|
2326 | message<<serverDomainId<<string("lon") ; |
---|
2327 | scattererConnector->transfer(lonvalue, client, event,message) ; |
---|
2328 | } |
---|
2329 | |
---|
2330 | { // send latitude |
---|
2331 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
2332 | CMessage message ; |
---|
2333 | message<<serverDomainId<<string("lat") ; |
---|
2334 | scattererConnector->transfer(latvalue, client, event, message) ; |
---|
2335 | } |
---|
2336 | } |
---|
2337 | |
---|
2338 | if (hasBounds) |
---|
2339 | { |
---|
2340 | { // send longitude boudaries |
---|
2341 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
2342 | CMessage message ; |
---|
2343 | message<<serverDomainId<<string("boundslon") ; |
---|
2344 | scattererConnector->transfer(nvertex, bounds_lonvalue, client, event, message ) ; |
---|
2345 | } |
---|
2346 | |
---|
2347 | { // send latitude boudaries |
---|
2348 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
2349 | CMessage message ; |
---|
2350 | message<<serverDomainId<<string("boundslat") ; |
---|
2351 | scattererConnector->transfer(nvertex, bounds_latvalue, client, event, message ) ; |
---|
2352 | } |
---|
2353 | } |
---|
2354 | |
---|
2355 | if (hasArea) |
---|
2356 | { // send area |
---|
2357 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
2358 | CMessage message ; |
---|
2359 | message<<serverDomainId<<string("area") ; |
---|
2360 | scattererConnector->transfer(areavalue, client, event,message) ; |
---|
2361 | } |
---|
2362 | } |
---|
2363 | |
---|
2364 | void CDomain::recvDistributedAttributes(CEventServer& event) |
---|
2365 | TRY |
---|
2366 | { |
---|
2367 | string domainId; |
---|
2368 | string type ; |
---|
2369 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> domainId >> type ; |
---|
2370 | get(domainId)->recvDistributedAttributes(event, type); |
---|
2371 | } |
---|
2372 | CATCH |
---|
2373 | |
---|
2374 | void CDomain::recvDistributedAttributes(CEventServer& event, const string& type) |
---|
2375 | TRY |
---|
2376 | { |
---|
2377 | if (type=="lon") |
---|
2378 | { |
---|
2379 | CArray<double,1> value ; |
---|
2380 | gathererConnector_->transfer(event, value, 0.); |
---|
2381 | lonvalue_2d.resize(ni,nj) ; |
---|
2382 | if (lonvalue_2d.numElements()>0) lonvalue_2d=CArray<double,2>(value.dataFirst(),shape(ni,nj),neverDeleteData) ; |
---|
2383 | } |
---|
2384 | else if (type=="lat") |
---|
2385 | { |
---|
2386 | CArray<double,1> value ; |
---|
2387 | gathererConnector_->transfer(event, value, 0.); |
---|
2388 | latvalue_2d.resize(ni,nj) ; |
---|
2389 | if (latvalue_2d.numElements()>0) latvalue_2d=CArray<double,2>(value.dataFirst(),shape(ni,nj),neverDeleteData) ; |
---|
2390 | } |
---|
2391 | else if (type=="boundslon") |
---|
2392 | { |
---|
2393 | CArray<double,1> value ; |
---|
2394 | gathererConnector_->transfer(event, nvertex, value, 0.); |
---|
2395 | bounds_lon_2d.resize(nvertex,ni,nj) ; |
---|
2396 | if (bounds_lon_2d.numElements()>0) bounds_lon_2d=CArray<double,3>(value.dataFirst(),shape(nvertex,ni,nj),neverDeleteData) ; |
---|
2397 | } |
---|
2398 | else if (type=="boundslat") |
---|
2399 | { |
---|
2400 | CArray<double,1> value ; |
---|
2401 | gathererConnector_->transfer(event, nvertex, value, 0.); |
---|
2402 | bounds_lat_2d.resize(nvertex,ni,nj) ; |
---|
2403 | if (bounds_lat_2d.numElements()>0) bounds_lat_2d=CArray<double,3>(value.dataFirst(),shape(nvertex,ni,nj),neverDeleteData) ; |
---|
2404 | } |
---|
2405 | else if (type=="area") |
---|
2406 | { |
---|
2407 | CArray<double,1> value ; |
---|
2408 | gathererConnector_->transfer(event, value, 0.); |
---|
2409 | area_2d.resize(ni,nj) ; |
---|
2410 | if (area_2d.numElements()>0) area_2d=CArray<double,2>(value.dataFirst(),shape(ni,nj),neverDeleteData) ; |
---|
2411 | } |
---|
2412 | } |
---|
2413 | CATCH |
---|
2414 | |
---|
2415 | bool CDomain::dispatchEvent(CEventServer& event) |
---|
2416 | TRY |
---|
2417 | { |
---|
2418 | if (SuperClass::dispatchEvent(event)) return true; |
---|
2419 | else |
---|
2420 | { |
---|
2421 | switch(event.type) |
---|
2422 | { |
---|
2423 | case EVENT_ID_DOMAIN_DISTRIBUTION: |
---|
2424 | recvDomainDistribution(event); |
---|
2425 | return true; |
---|
2426 | break; |
---|
2427 | case EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE: |
---|
2428 | recvDistributedAttributes(event); |
---|
2429 | return true; |
---|
2430 | break; |
---|
2431 | default: |
---|
2432 | ERROR("bool CDomain::dispatchEvent(CEventServer& event)", |
---|
2433 | << "Unknown Event"); |
---|
2434 | return false; |
---|
2435 | } |
---|
2436 | } |
---|
2437 | } |
---|
2438 | CATCH |
---|
2439 | |
---|
2440 | |
---|
2441 | /*! |
---|
2442 | Compare two domain objects. |
---|
2443 | They are equal if only if they have identical attributes as well as their values. |
---|
2444 | Moreover, they must have the same transformations. |
---|
2445 | \param [in] domain Compared domain |
---|
2446 | \return result of the comparison |
---|
2447 | */ |
---|
2448 | bool CDomain::isEqual(CDomain* obj) |
---|
2449 | TRY |
---|
2450 | { |
---|
2451 | vector<StdString> excludedAttr; |
---|
2452 | excludedAttr.push_back("domain_ref"); |
---|
2453 | bool objEqual = SuperClass::isEqual(obj, excludedAttr); |
---|
2454 | if (!objEqual) return objEqual; |
---|
2455 | |
---|
2456 | TransMapTypes thisTrans = this->getAllTransformations(); |
---|
2457 | TransMapTypes objTrans = obj->getAllTransformations(); |
---|
2458 | |
---|
2459 | TransMapTypes::const_iterator it, itb, ite; |
---|
2460 | std::vector<ETranformationType> thisTransType, objTransType; |
---|
2461 | for (it = thisTrans.begin(); it != thisTrans.end(); ++it) |
---|
2462 | thisTransType.push_back(it->first); |
---|
2463 | for (it = objTrans.begin(); it != objTrans.end(); ++it) |
---|
2464 | objTransType.push_back(it->first); |
---|
2465 | |
---|
2466 | if (thisTransType.size() != objTransType.size()) return false; |
---|
2467 | for (int idx = 0; idx < thisTransType.size(); ++idx) |
---|
2468 | objEqual &= (thisTransType[idx] == objTransType[idx]); |
---|
2469 | |
---|
2470 | return objEqual; |
---|
2471 | } |
---|
2472 | CATCH_DUMP_ATTR |
---|
2473 | |
---|
2474 | ///////////////////////////////////////////////////////////////////////// |
---|
2475 | /////////////// TRANSFORMATIONS ////////// |
---|
2476 | ///////////////////////////////////////////////////////////////////////// |
---|
2477 | |
---|
2478 | std::map<StdString, ETranformationType> CDomain::transformationMapList_ = std::map<StdString, ETranformationType>(); |
---|
2479 | bool CDomain::dummyTransformationMapList_ = CDomain::initializeTransformationMap(CDomain::transformationMapList_); |
---|
2480 | |
---|
2481 | bool CDomain::initializeTransformationMap(std::map<StdString, ETranformationType>& m) |
---|
2482 | TRY |
---|
2483 | { |
---|
2484 | m["zoom_domain"] = TRANS_EXTRACT_DOMAIN; |
---|
2485 | m["interpolate_domain"] = TRANS_INTERPOLATE_DOMAIN; |
---|
2486 | m["generate_rectilinear_domain"] = TRANS_GENERATE_RECTILINEAR_DOMAIN; |
---|
2487 | m["compute_connectivity_domain"] = TRANS_COMPUTE_CONNECTIVITY_DOMAIN; |
---|
2488 | m["expand_domain"] = TRANS_EXPAND_DOMAIN; |
---|
2489 | m["reorder_domain"] = TRANS_REORDER_DOMAIN; |
---|
2490 | m["extract_domain"] = TRANS_EXTRACT_DOMAIN; |
---|
2491 | m["redistribute_domain"] = TRANS_REDISTRIBUTE_DOMAIN; |
---|
2492 | return true; |
---|
2493 | } |
---|
2494 | CATCH |
---|
2495 | |
---|
2496 | |
---|
2497 | CTransformation<CDomain>* CDomain::addTransformation(ETranformationType transType, const StdString& id) |
---|
2498 | TRY |
---|
2499 | { |
---|
2500 | transformationMap_.push_back(std::make_pair(transType, CTransformation<CDomain>::createTransformation(transType,id))); |
---|
2501 | return transformationMap_.back().second; |
---|
2502 | } |
---|
2503 | CATCH_DUMP_ATTR |
---|
2504 | |
---|
2505 | CTransformation<CDomain>* CDomain::addTransformation(ETranformationType transType, CTransformation<CDomain>* transformation) |
---|
2506 | TRY |
---|
2507 | { |
---|
2508 | transformationMap_.push_back(std::make_pair(transType, transformation)); |
---|
2509 | return transformationMap_.back().second; |
---|
2510 | } |
---|
2511 | CATCH_DUMP_ATTR |
---|
2512 | /*! |
---|
2513 | Check whether a domain has transformation |
---|
2514 | \return true if domain has transformation |
---|
2515 | */ |
---|
2516 | bool CDomain::hasTransformation() |
---|
2517 | TRY |
---|
2518 | { |
---|
2519 | return (!transformationMap_.empty()); |
---|
2520 | } |
---|
2521 | CATCH_DUMP_ATTR |
---|
2522 | |
---|
2523 | /*! |
---|
2524 | Set transformation for current domain. It's the method to move transformation in hierarchy |
---|
2525 | \param [in] domTrans transformation on domain |
---|
2526 | */ |
---|
2527 | void CDomain::setTransformations(const TransMapTypes& domTrans) |
---|
2528 | TRY |
---|
2529 | { |
---|
2530 | transformationMap_ = domTrans; |
---|
2531 | } |
---|
2532 | CATCH_DUMP_ATTR |
---|
2533 | |
---|
2534 | /*! |
---|
2535 | Get all transformation current domain has |
---|
2536 | \return all transformation |
---|
2537 | */ |
---|
2538 | CDomain::TransMapTypes CDomain::getAllTransformations(void) |
---|
2539 | TRY |
---|
2540 | { |
---|
2541 | return transformationMap_; |
---|
2542 | } |
---|
2543 | CATCH_DUMP_ATTR |
---|
2544 | |
---|
2545 | void CDomain::duplicateTransformation(CDomain* src) |
---|
2546 | TRY |
---|
2547 | { |
---|
2548 | if (src->hasTransformation()) |
---|
2549 | { |
---|
2550 | this->setTransformations(src->getAllTransformations()); |
---|
2551 | } |
---|
2552 | } |
---|
2553 | CATCH_DUMP_ATTR |
---|
2554 | |
---|
2555 | /*! |
---|
2556 | * Go through the hierarchy to find the domain from which the transformations must be inherited |
---|
2557 | */ |
---|
2558 | void CDomain::solveInheritanceTransformation_old() |
---|
2559 | TRY |
---|
2560 | { |
---|
2561 | if (hasTransformation() || !hasDirectDomainReference()) |
---|
2562 | return; |
---|
2563 | |
---|
2564 | CDomain* domain = this; |
---|
2565 | std::vector<CDomain*> refDomains; |
---|
2566 | while (!domain->hasTransformation() && domain->hasDirectDomainReference()) |
---|
2567 | { |
---|
2568 | refDomains.push_back(domain); |
---|
2569 | domain = domain->getDirectDomainReference(); |
---|
2570 | } |
---|
2571 | |
---|
2572 | if (domain->hasTransformation()) |
---|
2573 | for (size_t i = 0; i < refDomains.size(); ++i) |
---|
2574 | refDomains[i]->setTransformations(domain->getAllTransformations()); |
---|
2575 | } |
---|
2576 | CATCH_DUMP_ATTR |
---|
2577 | |
---|
2578 | |
---|
2579 | void CDomain::solveInheritanceTransformation() |
---|
2580 | TRY |
---|
2581 | { |
---|
2582 | if (solveInheritanceTransformation_done_) return; |
---|
2583 | else solveInheritanceTransformation_done_=true ; |
---|
2584 | |
---|
2585 | CDomain* domain = this; |
---|
2586 | CDomain* Lastdomain ; |
---|
2587 | std::list<CDomain*> refDomains; |
---|
2588 | bool out=false ; |
---|
2589 | vector<StdString> excludedAttr; |
---|
2590 | excludedAttr.push_back("domain_ref"); |
---|
2591 | |
---|
2592 | refDomains.push_front(domain) ; |
---|
2593 | while (domain->hasDirectDomainReference() && !out) |
---|
2594 | { |
---|
2595 | CDomain* lastDomain=domain ; |
---|
2596 | domain = domain->getDirectDomainReference(); |
---|
2597 | domain->solveRefInheritance() ; |
---|
2598 | if (!domain->SuperClass::isEqual(lastDomain,excludedAttr)) out=true ; |
---|
2599 | refDomains.push_front(domain) ; |
---|
2600 | } |
---|
2601 | |
---|
2602 | CTransformationPaths::TPath path ; |
---|
2603 | auto& pathList = std::get<2>(path) ; |
---|
2604 | std::get<0>(path) = EElement::DOMAIN ; |
---|
2605 | std::get<1>(path) = refDomains.front()->getId() ; |
---|
2606 | for (auto& domain : refDomains) |
---|
2607 | { |
---|
2608 | CDomain::TransMapTypes transformations = domain->getAllTransformations(); |
---|
2609 | for(auto& transformation : transformations) pathList.push_back({transformation.second->getTransformationType(), |
---|
2610 | transformation.second->getId()}) ; |
---|
2611 | } |
---|
2612 | transformationPaths_.addPath(path) ; |
---|
2613 | |
---|
2614 | } |
---|
2615 | CATCH_DUMP_ATTR |
---|
2616 | |
---|
2617 | |
---|
2618 | bool CDomain::activateFieldWorkflow(CGarbageCollector& gc) |
---|
2619 | TRY |
---|
2620 | { |
---|
2621 | if (!domain_ref.isEmpty()) |
---|
2622 | { |
---|
2623 | CField* field=getFieldFromId(domain_ref) ; |
---|
2624 | if (field!=nullptr) |
---|
2625 | { |
---|
2626 | bool ret = field->buildWorkflowGraph(gc) ; |
---|
2627 | if (!ret) return false ; // cannot build workflow graph at this state |
---|
2628 | } |
---|
2629 | else |
---|
2630 | { |
---|
2631 | CDomain* domain = get(domain_ref) ; |
---|
2632 | bool ret = domain->activateFieldWorkflow(gc) ; |
---|
2633 | if (!ret) return false ; // cannot build workflow graph at this state |
---|
2634 | domain_ref=domain->getId() ; // replace domain_ref by solved reference |
---|
2635 | } |
---|
2636 | } |
---|
2637 | activateFieldWorkflow_done_=true ; |
---|
2638 | return true ; |
---|
2639 | } |
---|
2640 | CATCH_DUMP_ATTR |
---|
2641 | ///////////////////////////////////////////////////////////////////////////////////////////// |
---|
2642 | ///////////////////////////////////////////////////////////////////////////////////////////// |
---|
2643 | |
---|
2644 | void CDomain::setContextClient(CContextClient* contextClient) |
---|
2645 | TRY |
---|
2646 | { |
---|
2647 | if (clientsSet.find(contextClient)==clientsSet.end()) |
---|
2648 | { |
---|
2649 | clients.push_back(contextClient) ; |
---|
2650 | clientsSet.insert(contextClient); |
---|
2651 | } |
---|
2652 | } |
---|
2653 | CATCH_DUMP_ATTR |
---|
2654 | |
---|
2655 | /*! |
---|
2656 | Parse children nodes of a domain in xml file. |
---|
2657 | Whenver there is a new transformation, its type and name should be added into this function |
---|
2658 | \param node child node to process |
---|
2659 | */ |
---|
2660 | void CDomain::parse(xml::CXMLNode & node) |
---|
2661 | TRY |
---|
2662 | { |
---|
2663 | SuperClass::parse(node); |
---|
2664 | |
---|
2665 | if (node.goToChildElement()) |
---|
2666 | { |
---|
2667 | StdString nodeElementName; |
---|
2668 | do |
---|
2669 | { |
---|
2670 | StdString nodeId(""); |
---|
2671 | if (node.getAttributes().end() != node.getAttributes().find("id")) |
---|
2672 | { nodeId = node.getAttributes()["id"]; } |
---|
2673 | |
---|
2674 | nodeElementName = node.getElementName(); |
---|
2675 | std::map<StdString, ETranformationType>::const_iterator ite = transformationMapList_.end(), it; |
---|
2676 | it = transformationMapList_.find(nodeElementName); |
---|
2677 | if (ite != it) |
---|
2678 | { |
---|
2679 | if (it->first == "zoom_domain") |
---|
2680 | { |
---|
2681 | info(0) << "WARNING : " << it->first << " is deprecated, replaced by extract_domain." << endl; |
---|
2682 | } |
---|
2683 | transformationMap_.push_back(std::make_pair(it->second, CTransformation<CDomain>::createTransformation(it->second, |
---|
2684 | nodeId, |
---|
2685 | &node))); |
---|
2686 | } |
---|
2687 | else |
---|
2688 | { |
---|
2689 | ERROR("void CDomain::parse(xml::CXMLNode & node)", |
---|
2690 | << "The transformation " << nodeElementName << " has not been supported yet."); |
---|
2691 | } |
---|
2692 | } while (node.goToNextElement()) ; |
---|
2693 | node.goToParentElement(); |
---|
2694 | } |
---|
2695 | } |
---|
2696 | CATCH_DUMP_ATTR |
---|
2697 | //---------------------------------------------------------------- |
---|
2698 | |
---|
2699 | DEFINE_REF_FUNC(Domain,domain) |
---|
2700 | |
---|
2701 | ///--------------------------------------------------------------- |
---|
2702 | |
---|
2703 | } // namespace xios |
---|