[219] | 1 | #include "axis.hpp" |
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| 2 | |
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[352] | 3 | #include "attribute_template.hpp" |
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| 4 | #include "object_template.hpp" |
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| 5 | #include "group_template.hpp" |
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| 6 | #include "message.hpp" |
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| 7 | #include "type.hpp" |
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[567] | 8 | #include "context.hpp" |
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| 9 | #include "context_client.hpp" |
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[676] | 10 | #include "context_server.hpp" |
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[591] | 11 | #include "xios_spl.hpp" |
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[633] | 12 | #include "server_distribution_description.hpp" |
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| 13 | #include "client_server_mapping_distributed.hpp" |
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[676] | 14 | #include "distribution_client.hpp" |
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[219] | 15 | |
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[2203] | 16 | #include <algorithm> |
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| 17 | #include <regex> |
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| 18 | |
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[335] | 19 | namespace xios { |
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[540] | 20 | |
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[1421] | 21 | /// ////////////////////// Definitions ////////////////////// /// |
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[219] | 22 | |
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| 23 | CAxis::CAxis(void) |
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| 24 | : CObjectTemplate<CAxis>() |
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[1975] | 25 | , CAxisAttributes(), isChecked(false), relFiles() |
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[2507] | 26 | , hasBounds_(false), isCompressible_(false) |
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| 27 | , transformationMap_() |
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[1975] | 28 | , clients() |
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[621] | 29 | { |
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| 30 | } |
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[219] | 31 | |
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| 32 | CAxis::CAxis(const StdString & id) |
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| 33 | : CObjectTemplate<CAxis>(id) |
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[1975] | 34 | , CAxisAttributes(), isChecked(false), relFiles() |
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[2507] | 35 | , hasBounds_(false), isCompressible_(false) |
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| 36 | , transformationMap_() |
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[1975] | 37 | , clients() |
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[621] | 38 | { |
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| 39 | } |
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[219] | 40 | |
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| 41 | CAxis::~CAxis(void) |
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| 42 | { /* Ne rien faire de plus */ } |
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| 43 | |
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[836] | 44 | std::map<StdString, ETranformationType> CAxis::transformationMapList_ = std::map<StdString, ETranformationType>(); |
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| 45 | bool CAxis::dummyTransformationMapList_ = CAxis::initializeTransformationMap(CAxis::transformationMapList_); |
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| 46 | bool CAxis::initializeTransformationMap(std::map<StdString, ETranformationType>& m) |
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[1622] | 47 | TRY |
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[836] | 48 | { |
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[2339] | 49 | m["zoom_axis"] = TRANS_EXTRACT_AXIS; |
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[836] | 50 | m["interpolate_axis"] = TRANS_INTERPOLATE_AXIS; |
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[1558] | 51 | m["extract_axis"] = TRANS_EXTRACT_AXIS; |
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[836] | 52 | m["inverse_axis"] = TRANS_INVERSE_AXIS; |
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[895] | 53 | m["reduce_domain"] = TRANS_REDUCE_DOMAIN_TO_AXIS; |
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[1301] | 54 | m["reduce_axis"] = TRANS_REDUCE_AXIS_TO_AXIS; |
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[895] | 55 | m["extract_domain"] = TRANS_EXTRACT_DOMAIN_TO_AXIS; |
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[1275] | 56 | m["temporal_splitting"] = TRANS_TEMPORAL_SPLITTING; |
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[1314] | 57 | m["duplicate_scalar"] = TRANS_DUPLICATE_SCALAR_TO_AXIS; |
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[2507] | 58 | m["redistribute_axis"] = TRANS_REDISTRIBUTE_AXIS; |
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| 59 | |
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[2196] | 60 | return true; |
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[836] | 61 | } |
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[1622] | 62 | CATCH |
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[2274] | 63 | |
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| 64 | void CAxis::releaseStaticAllocation(void) |
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| 65 | { |
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| 66 | transformationMapList_.clear() ; |
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| 67 | CTransformation<CAxis>::unregisterAllTransformations() ; |
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| 68 | CGridTransformationFactory<CAxis>::unregisterAllTransformations() ; |
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| 69 | } |
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[836] | 70 | |
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[219] | 71 | ///--------------------------------------------------------------- |
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[1158] | 72 | |
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| 73 | const std::set<StdString> & CAxis::getRelFiles(void) const |
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[1622] | 74 | TRY |
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[1158] | 75 | { |
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| 76 | return (this->relFiles); |
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| 77 | } |
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[1622] | 78 | CATCH |
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[1158] | 79 | |
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[219] | 80 | bool CAxis::IsWritten(const StdString & filename) const |
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[1622] | 81 | TRY |
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[219] | 82 | { |
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| 83 | return (this->relFiles.find(filename) != this->relFiles.end()); |
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| 84 | } |
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[1622] | 85 | CATCH |
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[219] | 86 | |
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[676] | 87 | bool CAxis::isWrittenCompressed(const StdString& filename) const |
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[1622] | 88 | TRY |
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[676] | 89 | { |
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| 90 | return (this->relFilesCompressed.find(filename) != this->relFilesCompressed.end()); |
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| 91 | } |
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[1622] | 92 | CATCH |
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[676] | 93 | |
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[594] | 94 | bool CAxis::isDistributed(void) const |
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[1622] | 95 | TRY |
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[594] | 96 | { |
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[1158] | 97 | bool distributed = (!this->begin.isEmpty() && !this->n.isEmpty() && (this->begin + this->n < this->n_glo)) || |
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| 98 | (!this->n.isEmpty() && (this->n != this->n_glo)); |
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[1622] | 99 | // A condition to make sure that if there is only one client, axis |
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[1158] | 100 | // should be considered to be distributed. This should be a temporary solution |
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[1787] | 101 | distributed |= (1 == CContext::getCurrent()->intraCommSize_); |
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[1158] | 102 | return distributed; |
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[594] | 103 | } |
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[1622] | 104 | CATCH |
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[594] | 105 | |
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[676] | 106 | /*! |
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[1956] | 107 | * Compute if the axis can be ouput in a compressed way. |
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| 108 | * In this case the workflow view on server side must be the same |
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| 109 | * than the full view for all context rank. The result is stored on |
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| 110 | * internal isCompressible_ attribute. |
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[676] | 111 | */ |
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[1956] | 112 | void CAxis::computeIsCompressible(void) |
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[1622] | 113 | TRY |
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[676] | 114 | { |
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[1956] | 115 | // mesh is compressible contains some masked or indexed value, ie if full view is different of workflow view. |
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| 116 | // But now assume that the size of the 2 view must be equal for everybody. True on server side |
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| 117 | int isSameView = getLocalView(CElementView::FULL)->getSize() == getLocalView(CElementView::WORKFLOW)->getSize(); |
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| 118 | MPI_Allreduce(MPI_IN_PLACE, &isSameView, 1, MPI_INT, MPI_LAND, CContext::getCurrent()->getIntraComm()) ; |
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| 119 | if (isSameView) isCompressible_ = false ; |
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| 120 | else isCompressible_ = true ; |
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| 121 | isCompressibleComputed_=true ; |
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[676] | 122 | } |
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[1622] | 123 | CATCH |
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[676] | 124 | |
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[219] | 125 | void CAxis::addRelFile(const StdString & filename) |
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[1622] | 126 | TRY |
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[219] | 127 | { |
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| 128 | this->relFiles.insert(filename); |
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| 129 | } |
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[1622] | 130 | CATCH_DUMP_ATTR |
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[219] | 131 | |
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[676] | 132 | void CAxis::addRelFileCompressed(const StdString& filename) |
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[1622] | 133 | TRY |
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[676] | 134 | { |
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| 135 | this->relFilesCompressed.insert(filename); |
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| 136 | } |
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[1622] | 137 | CATCH_DUMP_ATTR |
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[676] | 138 | |
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[1975] | 139 | //---------------------------------------------------------------- |
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[219] | 140 | |
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[676] | 141 | /*! |
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[731] | 142 | * Compute the minimum buffer size required to send the attributes to the server(s). |
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| 143 | * |
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| 144 | * \return A map associating the server rank with its minimum buffer size. |
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| 145 | */ |
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[1371] | 146 | std::map<int, StdSize> CAxis::getAttributesBufferSize(CContextClient* client, const std::vector<int>& globalDim, int orderPositionInGrid, |
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| 147 | CServerDistributionDescription::ServerDistributionType distType) |
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[1622] | 148 | TRY |
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[731] | 149 | { |
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| 150 | |
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[1330] | 151 | std::map<int, StdSize> attributesSizes = getMinimumBufferSizeForAttributes(client); |
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[731] | 152 | |
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[1371] | 153 | // bool isNonDistributed = (n_glo == n); |
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| 154 | bool isDistributed = (orderPositionInGrid == CServerDistributionDescription::defaultDistributedDimension(globalDim.size(), distType)) |
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| 155 | || (index.numElements() != n_glo); |
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[731] | 156 | |
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| 157 | if (client->isServerLeader()) |
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| 158 | { |
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| 159 | // size estimation for sendServerAttribut |
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| 160 | size_t size = 6 * sizeof(size_t); |
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| 161 | // size estimation for sendNonDistributedValue |
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[1371] | 162 | if (!isDistributed) |
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| 163 | { |
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| 164 | // size = std::max(size, CArray<double,1>::size(n_glo) + (isCompressible_ ? CArray<int,1>::size(n_glo) : 0)); |
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| 165 | size += CArray<int,1>::size(n_glo); |
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| 166 | size += CArray<int,1>::size(n_glo); |
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| 167 | size += CArray<bool,1>::size(n_glo); |
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| 168 | size += CArray<double,1>::size(n_glo); |
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[2507] | 169 | if (hasBounds_) |
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[1371] | 170 | size += CArray<double,2>::size(2*n_glo); |
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[2507] | 171 | if (hasLabel_) |
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[1371] | 172 | size += CArray<StdString,1>::size(n_glo); |
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| 173 | } |
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[731] | 174 | size += CEventClient::headerSize + getId().size() + sizeof(size_t); |
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| 175 | |
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| 176 | const std::list<int>& ranks = client->getRanksServerLeader(); |
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| 177 | for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank) |
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| 178 | { |
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| 179 | if (size > attributesSizes[*itRank]) |
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| 180 | attributesSizes[*itRank] = size; |
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| 181 | } |
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[1371] | 182 | const std::list<int>& ranksNonLeaders = client->getRanksServerNotLeader(); |
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| 183 | for (std::list<int>::const_iterator itRank = ranksNonLeaders.begin(), itRankEnd = ranksNonLeaders.end(); itRank != itRankEnd; ++itRank) |
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| 184 | { |
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| 185 | if (size > attributesSizes[*itRank]) |
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| 186 | attributesSizes[*itRank] = size; |
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| 187 | } |
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| 188 | |
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[731] | 189 | } |
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| 190 | |
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[1371] | 191 | if (isDistributed) |
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[731] | 192 | { |
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| 193 | // size estimation for sendDistributedValue |
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[2343] | 194 | std::unordered_map<int, vector<size_t> >::const_iterator it, ite = indSrv_[client->getRemoteSize()].end(); |
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| 195 | for (it = indSrv_[client->getRemoteSize()].begin(); it != ite; ++it) |
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[731] | 196 | { |
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[1371] | 197 | size_t size = 6 * sizeof(size_t); |
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| 198 | size += CArray<int,1>::size(it->second.size()); |
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| 199 | size += CArray<int,1>::size(it->second.size()); |
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| 200 | size += CArray<bool,1>::size(it->second.size()); |
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| 201 | size += CArray<double,1>::size(it->second.size()); |
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[2507] | 202 | if (hasBounds_) |
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[1371] | 203 | size += CArray<double,2>::size(2 * it->second.size()); |
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[2507] | 204 | if (hasLabel_) |
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[1371] | 205 | size += CArray<StdString,1>::size(it->second.size()); |
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[731] | 206 | |
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[1371] | 207 | size += CEventClient::headerSize + getId().size() + sizeof(size_t); |
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[731] | 208 | if (size > attributesSizes[it->first]) |
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| 209 | attributesSizes[it->first] = size; |
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| 210 | } |
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| 211 | } |
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| 212 | return attributesSizes; |
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| 213 | } |
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[1622] | 214 | CATCH_DUMP_ATTR |
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[731] | 215 | |
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| 216 | //---------------------------------------------------------------- |
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| 217 | |
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[219] | 218 | StdString CAxis::GetName(void) { return (StdString("axis")); } |
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| 219 | StdString CAxis::GetDefName(void){ return (CAxis::GetName()); } |
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| 220 | ENodeType CAxis::GetType(void) { return (eAxis); } |
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| 221 | |
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| 222 | //---------------------------------------------------------------- |
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| 223 | |
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[622] | 224 | CAxis* CAxis::createAxis() |
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[1622] | 225 | TRY |
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[622] | 226 | { |
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| 227 | CAxis* axis = CAxisGroup::get("axis_definition")->createChild(); |
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| 228 | return axis; |
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| 229 | } |
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[1622] | 230 | CATCH |
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[622] | 231 | |
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[2206] | 232 | CAxis* CAxis::get(const string& id, bool noError) |
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[2203] | 233 | { |
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| 234 | const regex r("::"); |
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| 235 | smatch m; |
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| 236 | if (regex_search(id, m, r)) |
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| 237 | { |
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| 238 | if (m.size()!=1) ERROR("CAxis* CAxis::get(string& id)", <<" id = "<<id<< " -> bad format id, separator :: append more than one time"); |
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| 239 | string fieldId=m.prefix() ; |
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| 240 | if (fieldId.empty()) ERROR("CAxis* CAxis::get(string& id)", <<" id = "<<id<< " -> bad format id, field name is empty"); |
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| 241 | string suffix=m.suffix() ; |
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[2206] | 242 | if (!CField::has(fieldId)) |
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| 243 | if (noError) return nullptr ; |
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| 244 | else ERROR("CAxis* CAxis::get(string& id, bool noError)", <<" id = "<<id<< " -> field Id : < "<<fieldId<<" > doesn't exist"); |
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[2203] | 245 | CField* field=CField::get(fieldId) ; |
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[2206] | 246 | return field->getAssociatedAxis(suffix, noError) ; |
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[2203] | 247 | } |
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[2206] | 248 | { |
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| 249 | if (noError) if(!CObjectFactory::HasObject<CAxis>(id)) return nullptr ; |
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| 250 | return CObjectFactory::GetObject<CAxis>(id).get(); |
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| 251 | } |
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[2203] | 252 | } |
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[2206] | 253 | |
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| 254 | bool CAxis::has(const string& id) |
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| 255 | { |
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| 256 | if (CAxis::get(id,true)==nullptr) return false ; |
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| 257 | else return true ; |
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| 258 | } |
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| 259 | |
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| 260 | CField* CAxis::getFieldFromId(const string& id) |
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| 261 | { |
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| 262 | const regex r("::"); |
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| 263 | smatch m; |
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| 264 | if (regex_search(id, m, r)) |
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| 265 | { |
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| 266 | if (m.size()!=1) ERROR("CField* CAxis::getFieldFromId(const string& id)", <<" id = "<<id<< " -> bad format id, separator :: append more than one time"); |
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| 267 | string fieldId=m.prefix() ; |
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| 268 | if (fieldId.empty()) ERROR("CField* CAxis::getFieldFromId(const string& id)", <<" id = "<<id<< " -> bad format id, field name is empty"); |
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| 269 | string suffix=m.suffix() ; |
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| 270 | CField* field=CField::get(fieldId) ; |
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| 271 | return field ; |
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| 272 | } |
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| 273 | else return nullptr; |
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| 274 | } |
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[2203] | 275 | |
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[1144] | 276 | /*! |
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| 277 | Check common attributes of an axis. |
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| 278 | This check should be done in the very beginning of work flow |
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| 279 | */ |
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[2291] | 280 | |
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[219] | 281 | void CAxis::checkAttributes(void) |
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[2291] | 282 | { |
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| 283 | if (checkAttributes_done_) return ; |
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| 284 | checkGeometricAttributes(true) ; |
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| 285 | initializeLocalElement() ; |
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| 286 | addFullView() ; |
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| 287 | addWorkflowView() ; |
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| 288 | addModelView() ; |
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| 289 | |
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| 290 | checkAttributes_done_ = true ; |
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| 291 | } |
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| 292 | |
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| 293 | void CAxis::resetGeometricAttributes(void) |
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| 294 | { |
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| 295 | n_glo.reset(); |
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| 296 | index.reset(); |
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| 297 | n.reset(); |
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| 298 | begin.reset(); |
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| 299 | mask.reset(); |
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| 300 | data_index.reset(); |
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| 301 | data_n.reset(); |
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| 302 | data_begin.reset(); |
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| 303 | value.reset(); |
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| 304 | bounds.reset(); |
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| 305 | label.reset() ; |
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| 306 | } |
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| 307 | |
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[2388] | 308 | size_t CAxis::computeAttributesHash( MPI_Comm comm ) |
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[2386] | 309 | { |
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| 310 | // Compute the hash of distributed attributs (value ...) |
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| 311 | int globalSize = this->n_glo.getValue(); |
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| 312 | CArray<size_t,1> globalIndex; // No redundancy globalIndex will be computed with the connector |
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| 313 | shared_ptr<CGridTransformConnector> gridTransformConnector; |
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| 314 | // Compute a without redundancy element FULL view to enable a consistent hash computation (and a distributed globalIndex) |
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| 315 | this->getLocalView(CElementView::FULL)->createWithoutRedundancyFullViewConnector( globalSize, comm, gridTransformConnector, globalIndex ); |
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| 316 | int localSize = globalIndex.numElements(); |
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| 317 | |
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| 318 | CArray<double,1> distributedValue ; |
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| 319 | gridTransformConnector->transfer(this->value, distributedValue ); |
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| 320 | |
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[2388] | 321 | size_t localHash = 0; |
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[2386] | 322 | for (int iloc=0; iloc<localSize ; iloc++ ) localHash+=globalIndex(iloc)*distributedValue(iloc); |
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[2388] | 323 | size_t distributedHash = 0; |
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| 324 | MPI_Allreduce( &localHash, &distributedHash, 1, MPI_UNSIGNED_LONG, MPI_SUM, comm ); |
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[2386] | 325 | |
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| 326 | // Compute the hash of global attributs (unit, prec ...) |
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| 327 | vector<StdString> excludedAttr; |
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| 328 | //excludedAttr.push_back("name"); |
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| 329 | // internal attributs |
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| 330 | excludedAttr.insert(excludedAttr.end(), { "index", "data_n", "data_begin", "data_index" }); |
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| 331 | excludedAttr.insert(excludedAttr.end(), { "begin", "n" }); |
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| 332 | excludedAttr.push_back("axis_ref"); |
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| 333 | // in distributed |
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| 334 | excludedAttr.push_back("value"); |
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| 335 | // should be considered in distributed |
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| 336 | excludedAttr.push_back("bounds"); |
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| 337 | excludedAttr.push_back("label"); |
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| 338 | excludedAttr.push_back("mask"); // ??? |
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| 339 | |
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[2388] | 340 | size_t globalHash = this->computeGlobalAttributesHash( excludedAttr ); |
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[2386] | 341 | |
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| 342 | return distributedHash + globalHash; |
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| 343 | } |
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[2389] | 344 | |
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| 345 | void CAxis::renameAttributesBeforeWriting(CAxis* writtenAxis) |
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| 346 | { |
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| 347 | if (writtenAxis!=NULL) |
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| 348 | { |
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| 349 | this->name = writtenAxis->getAxisOutputName(); |
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| 350 | // + label if necessary, other attributs concerned ? |
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| 351 | } |
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| 352 | else |
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| 353 | { |
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| 354 | this->name = this->getId(); |
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| 355 | // + label if necessary, other attributs concerned ? |
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| 356 | } |
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| 357 | } |
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| 358 | |
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[2291] | 359 | void CAxis::setGeometricAttributes(const CAxis& axisSrc) |
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| 360 | { |
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| 361 | resetGeometricAttributes() ; |
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| 362 | n_glo=axisSrc.n_glo; |
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| 363 | if (!axisSrc.index.isEmpty()) |
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| 364 | { |
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| 365 | index.resize(axisSrc.index.shape()) ; |
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| 366 | index=axisSrc.index; |
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| 367 | } |
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| 368 | |
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| 369 | n=axisSrc.n; |
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| 370 | begin=axisSrc.begin; |
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| 371 | if (!axisSrc.mask.isEmpty()) |
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| 372 | { |
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| 373 | mask.resize(axisSrc.mask.shape()) ; |
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| 374 | mask=axisSrc.mask; |
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| 375 | } |
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| 376 | if (!axisSrc.data_index.isEmpty()) |
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| 377 | { |
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| 378 | data_index.resize(axisSrc.data_index.shape()) ; |
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| 379 | data_index=axisSrc.data_index; |
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| 380 | } |
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| 381 | data_n=axisSrc.data_n; |
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| 382 | data_begin=axisSrc.data_begin; |
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| 383 | if (!axisSrc.value.isEmpty()) |
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| 384 | { |
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| 385 | value.resize(axisSrc.value.shape()) ; |
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| 386 | value=axisSrc.value; |
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| 387 | } |
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| 388 | |
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| 389 | if (!axisSrc.bounds.isEmpty()) |
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| 390 | { |
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| 391 | bounds.resize(axisSrc.bounds.shape()) ; |
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| 392 | bounds=axisSrc.bounds; |
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| 393 | } |
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| 394 | if (!axisSrc.label.isEmpty()) |
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| 395 | { |
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| 396 | label.resize(axisSrc.label.shape()) ; |
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| 397 | label=axisSrc.label; |
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| 398 | } |
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| 399 | |
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| 400 | } |
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| 401 | |
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| 402 | bool CAxis::checkGeometricAttributes(bool generateError) |
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[1622] | 403 | TRY |
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[219] | 404 | { |
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[1637] | 405 | CContext* context=CContext::getCurrent(); |
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| 406 | |
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| 407 | if (this->n_glo.isEmpty()) |
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[2291] | 408 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
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| 409 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
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| 410 | << "The axis is wrongly defined, attribute 'n_glo' must be specified") |
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| 411 | else return false ; |
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[666] | 412 | StdSize size = this->n_glo.getValue(); |
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[540] | 413 | |
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[970] | 414 | if (!this->index.isEmpty()) |
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[551] | 415 | { |
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[970] | 416 | if (n.isEmpty()) n = index.numElements(); |
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| 417 | |
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| 418 | // It's not so correct but if begin is not the first value of index |
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| 419 | // then data on the local axis has user-defined distribution. In this case, begin has no meaning. |
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| 420 | if (begin.isEmpty()) begin = index(0); |
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[551] | 421 | } |
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[970] | 422 | else |
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| 423 | { |
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| 424 | if (!this->begin.isEmpty()) |
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| 425 | { |
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| 426 | if (begin < 0 || begin > size - 1) |
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[2291] | 427 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
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| 428 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
---|
| 429 | << "The axis is wrongly defined, attribute 'begin' (" |
---|
| 430 | << begin.getValue() << ") must be non-negative and smaller than size-1 (" << size - 1 << ").") |
---|
| 431 | else return false ; |
---|
[970] | 432 | } |
---|
| 433 | else this->begin.setValue(0); |
---|
[551] | 434 | |
---|
[970] | 435 | if (!this->n.isEmpty()) |
---|
| 436 | { |
---|
| 437 | if (n < 0 || n > size) |
---|
[2291] | 438 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 439 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
---|
| 440 | << "The axis is wrongly defined, attribute 'n' (" << n.getValue() << ") must be non-negative and smaller than size (" |
---|
| 441 | << size << ").") |
---|
| 442 | else return false ; |
---|
[970] | 443 | } |
---|
| 444 | else this->n.setValue(size); |
---|
| 445 | |
---|
| 446 | { |
---|
| 447 | index.resize(n); |
---|
| 448 | for (int i = 0; i < n; ++i) index(i) = i+begin; |
---|
| 449 | } |
---|
[551] | 450 | } |
---|
[624] | 451 | |
---|
[816] | 452 | if (!this->value.isEmpty()) |
---|
| 453 | { |
---|
[1869] | 454 | StdSize true_size = value.numElements(); |
---|
| 455 | if (this->n.getValue() != true_size) |
---|
[2291] | 456 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 457 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
---|
| 458 | << "The axis is wrongly defined, attribute 'value' has a different size (" << true_size |
---|
| 459 | << ") than the one defined by the \'size\' attribute (" << n.getValue() << ").") |
---|
| 460 | else return false ; |
---|
[2507] | 461 | this->hasValue_ = true; |
---|
[816] | 462 | } |
---|
[219] | 463 | |
---|
[2291] | 464 | if (!this->checkBounds(generateError)) return false; |
---|
| 465 | if (!this->checkMask(generateError)) return false; |
---|
| 466 | if (!this->checkData(generateError)) return false; |
---|
| 467 | if (!this->checkLabel(generateError)) return false; |
---|
| 468 | |
---|
| 469 | return true ; |
---|
[219] | 470 | } |
---|
[1622] | 471 | CATCH_DUMP_ATTR |
---|
[219] | 472 | |
---|
[1918] | 473 | |
---|
[1144] | 474 | /*! |
---|
[1637] | 475 | Check the validity of data, fill in values if any, and apply mask. |
---|
[1144] | 476 | */ |
---|
[2291] | 477 | bool CAxis::checkData(bool generateError) |
---|
[1622] | 478 | TRY |
---|
[551] | 479 | { |
---|
| 480 | if (data_begin.isEmpty()) data_begin.setValue(0); |
---|
[679] | 481 | |
---|
| 482 | if (data_n.isEmpty()) |
---|
[551] | 483 | { |
---|
[679] | 484 | data_n.setValue(n); |
---|
| 485 | } |
---|
| 486 | else if (data_n.getValue() < 0) |
---|
| 487 | { |
---|
[2291] | 488 | if (generateError) ERROR("CAxis::checkData(void)", |
---|
| 489 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 490 | << "The data size should be strictly positive ('data_n' = " << data_n.getValue() << ").") |
---|
| 491 | else return false ; |
---|
[551] | 492 | } |
---|
| 493 | |
---|
| 494 | if (data_index.isEmpty()) |
---|
| 495 | { |
---|
[679] | 496 | data_index.resize(data_n); |
---|
[1637] | 497 | for (int i = 0; i < data_n; ++i) |
---|
| 498 | { |
---|
| 499 | if ((i+data_begin) >= 0 && (i+data_begin<n)) |
---|
| 500 | { |
---|
| 501 | if (mask(i+data_begin)) |
---|
| 502 | data_index(i) = i+data_begin; |
---|
| 503 | else |
---|
| 504 | data_index(i) = -1; |
---|
| 505 | } |
---|
| 506 | else |
---|
| 507 | data_index(i) = -1; |
---|
| 508 | } |
---|
[551] | 509 | } |
---|
[1637] | 510 | else |
---|
| 511 | { |
---|
| 512 | if (data_index.numElements() != data_n) |
---|
| 513 | { |
---|
[2291] | 514 | if (generateError) ERROR("CAxis::checkData(void)", |
---|
| 515 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 516 | << "The size of data_index = "<< data_index.numElements() << "is not equal to the data size data_n = " |
---|
| 517 | << data_n.getValue() << ").") |
---|
| 518 | else return false ; |
---|
[1637] | 519 | } |
---|
| 520 | for (int i = 0; i < data_n; ++i) |
---|
| 521 | { |
---|
[1872] | 522 | if (data_index(i) >= 0 && data_index(i)<n) |
---|
| 523 | if (!mask(data_index(i))) data_index(i) = -1; |
---|
[1637] | 524 | } |
---|
| 525 | } |
---|
[2291] | 526 | return true ; |
---|
[551] | 527 | } |
---|
[1622] | 528 | CATCH_DUMP_ATTR |
---|
[551] | 529 | |
---|
[2291] | 530 | /*! |
---|
| 531 | Check validity of mask info and fill in values if any. |
---|
| 532 | */ |
---|
| 533 | bool CAxis::checkMask(bool generateError) |
---|
[1622] | 534 | TRY |
---|
[551] | 535 | { |
---|
| 536 | if (!mask.isEmpty()) |
---|
| 537 | { |
---|
[1637] | 538 | if (mask.extent(0) != n) |
---|
| 539 | { |
---|
[2291] | 540 | if (generateError) ERROR("CAxis::checkMask(void)", |
---|
| 541 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 542 | << "The mask does not have the same size as the local domain." << std::endl |
---|
| 543 | << "Local size is " << n.getValue() << "." << std::endl |
---|
| 544 | << "Mask size is " << mask.extent(0) << ".") |
---|
| 545 | else return false ; |
---|
[1637] | 546 | } |
---|
[551] | 547 | } |
---|
[1637] | 548 | else |
---|
| 549 | { |
---|
| 550 | mask.resize(n); |
---|
| 551 | mask = true; |
---|
[551] | 552 | } |
---|
[2291] | 553 | return true ; |
---|
[551] | 554 | } |
---|
[1622] | 555 | CATCH_DUMP_ATTR |
---|
[551] | 556 | |
---|
[1144] | 557 | /*! |
---|
| 558 | Check validity of bounds info and fill in values if any. |
---|
| 559 | */ |
---|
[2291] | 560 | bool CAxis::checkBounds(bool generateError) |
---|
[1622] | 561 | TRY |
---|
[1144] | 562 | { |
---|
| 563 | if (!bounds.isEmpty()) |
---|
| 564 | { |
---|
| 565 | if (bounds.extent(0) != 2 || bounds.extent(1) != n) |
---|
[2291] | 566 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 567 | << "The bounds array of the axis [ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] must be of dimension 2 x axis size." << std::endl |
---|
| 568 | << "Axis size is " << n.getValue() << "." << std::endl |
---|
| 569 | << "Bounds size is "<< bounds.extent(0) << " x " << bounds.extent(1) << ".") |
---|
| 570 | else return false ; |
---|
[2507] | 571 | hasBounds_ = true; |
---|
[1144] | 572 | } |
---|
[2507] | 573 | else hasBounds_ = false; |
---|
[2291] | 574 | return true ; |
---|
[1144] | 575 | } |
---|
[1622] | 576 | CATCH_DUMP_ATTR |
---|
[633] | 577 | |
---|
[2291] | 578 | bool CAxis::checkLabel(bool generateError) |
---|
[1622] | 579 | TRY |
---|
[1158] | 580 | { |
---|
| 581 | if (!label.isEmpty()) |
---|
| 582 | { |
---|
| 583 | if (label.extent(0) != n) |
---|
[2291] | 584 | if (generateError) ERROR("CAxis::checkLabel(void)", |
---|
| 585 | << "The label array of the axis [ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] must be of dimension of axis size." << std::endl |
---|
| 586 | << "Axis size is " << n.getValue() << "." << std::endl |
---|
| 587 | << "label size is "<< label.extent(0)<< " .") |
---|
| 588 | else return false ; |
---|
[2507] | 589 | hasLabel_ = true; |
---|
[1158] | 590 | } |
---|
[2507] | 591 | else hasLabel_ = false; |
---|
[2291] | 592 | return true ; |
---|
[1158] | 593 | } |
---|
[1622] | 594 | CATCH_DUMP_ATTR |
---|
[1202] | 595 | |
---|
[2291] | 596 | |
---|
| 597 | size_t CAxis::getGlobalWrittenSize(void) |
---|
| 598 | { |
---|
| 599 | return n_glo ; |
---|
| 600 | } |
---|
| 601 | |
---|
| 602 | |
---|
| 603 | |
---|
[1956] | 604 | |
---|
[1235] | 605 | /*! |
---|
| 606 | Dispatch event from the lower communication layer then process event according to its type |
---|
| 607 | */ |
---|
| 608 | bool CAxis::dispatchEvent(CEventServer& event) |
---|
[1622] | 609 | TRY |
---|
[1235] | 610 | { |
---|
| 611 | if (SuperClass::dispatchEvent(event)) return true; |
---|
| 612 | else |
---|
| 613 | { |
---|
| 614 | switch(event.type) |
---|
| 615 | { |
---|
[1930] | 616 | case EVENT_ID_AXIS_DISTRIBUTION: |
---|
| 617 | recvAxisDistribution(event); |
---|
| 618 | return true; |
---|
| 619 | break; |
---|
| 620 | case EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE: |
---|
[1235] | 621 | recvDistributedAttributes(event); |
---|
| 622 | return true; |
---|
| 623 | break; |
---|
| 624 | default : |
---|
| 625 | ERROR("bool CAxis::dispatchEvent(CEventServer& event)", |
---|
| 626 | << "Unknown Event"); |
---|
| 627 | return false; |
---|
| 628 | } |
---|
| 629 | } |
---|
| 630 | } |
---|
[1622] | 631 | CATCH |
---|
[567] | 632 | |
---|
[1975] | 633 | /* to remove later when reimplementing coupling */ |
---|
[1875] | 634 | void CAxis::sendAxisToCouplerOut(CContextClient* client, const std::vector<int>& globalDim, int orderPositionInGrid, const string& fieldId, int posInGrid) |
---|
| 635 | { |
---|
[1975] | 636 | if (sendAxisToCouplerOut_done_.count(client)!=0) return ; |
---|
| 637 | else sendAxisToCouplerOut_done_.insert(client) ; |
---|
[1875] | 638 | |
---|
| 639 | string axisId="_axis["+std::to_string(posInGrid)+"]_of_"+fieldId ; |
---|
| 640 | |
---|
| 641 | } |
---|
| 642 | |
---|
[2022] | 643 | string CAxis::getCouplingAlias(const string& fieldId, int posInGrid) |
---|
| 644 | { |
---|
| 645 | return "_axis["+std::to_string(posInGrid)+"]_of_"+fieldId ; |
---|
| 646 | } |
---|
| 647 | |
---|
[1875] | 648 | void CAxis::makeAliasForCoupling(const string& fieldId, int posInGrid) |
---|
| 649 | { |
---|
[2022] | 650 | const string axisId = getCouplingAlias(fieldId,posInGrid) ; |
---|
[1875] | 651 | this->createAlias(axisId) ; |
---|
| 652 | } |
---|
| 653 | |
---|
[1975] | 654 | |
---|
[1144] | 655 | /*! |
---|
[1158] | 656 | Compare two axis objects. |
---|
| 657 | They are equal if only if they have identical attributes as well as their values. |
---|
| 658 | Moreover, they must have the same transformations. |
---|
| 659 | \param [in] axis Compared axis |
---|
| 660 | \return result of the comparison |
---|
| 661 | */ |
---|
| 662 | bool CAxis::isEqual(CAxis* obj) |
---|
[1622] | 663 | TRY |
---|
[1158] | 664 | { |
---|
| 665 | vector<StdString> excludedAttr; |
---|
| 666 | excludedAttr.push_back("axis_ref"); |
---|
[987] | 667 | |
---|
[1158] | 668 | bool objEqual = SuperClass::isEqual(obj, excludedAttr); |
---|
| 669 | if (!objEqual) return objEqual; |
---|
| 670 | |
---|
| 671 | TransMapTypes thisTrans = this->getAllTransformations(); |
---|
| 672 | TransMapTypes objTrans = obj->getAllTransformations(); |
---|
| 673 | |
---|
| 674 | TransMapTypes::const_iterator it, itb, ite; |
---|
| 675 | std::vector<ETranformationType> thisTransType, objTransType; |
---|
| 676 | for (it = thisTrans.begin(); it != thisTrans.end(); ++it) |
---|
| 677 | thisTransType.push_back(it->first); |
---|
| 678 | for (it = objTrans.begin(); it != objTrans.end(); ++it) |
---|
| 679 | objTransType.push_back(it->first); |
---|
| 680 | |
---|
| 681 | if (thisTransType.size() != objTransType.size()) return false; |
---|
| 682 | for (int idx = 0; idx < thisTransType.size(); ++idx) |
---|
| 683 | objEqual &= (thisTransType[idx] == objTransType[idx]); |
---|
| 684 | |
---|
| 685 | return objEqual; |
---|
| 686 | } |
---|
[1622] | 687 | CATCH_DUMP_ATTR |
---|
[1158] | 688 | |
---|
[1235] | 689 | /* |
---|
| 690 | Add transformation into axis. This function only servers for Fortran interface |
---|
| 691 | \param [in] transType transformation type |
---|
| 692 | \param [in] id identifier of the transformation object |
---|
| 693 | */ |
---|
[836] | 694 | CTransformation<CAxis>* CAxis::addTransformation(ETranformationType transType, const StdString& id) |
---|
[1622] | 695 | TRY |
---|
[836] | 696 | { |
---|
| 697 | transformationMap_.push_back(std::make_pair(transType, CTransformation<CAxis>::createTransformation(transType,id))); |
---|
| 698 | return transformationMap_.back().second; |
---|
| 699 | } |
---|
[1622] | 700 | CATCH_DUMP_ATTR |
---|
[836] | 701 | |
---|
[1235] | 702 | /* |
---|
| 703 | Check whether an axis has (spatial) transformation |
---|
| 704 | */ |
---|
[619] | 705 | bool CAxis::hasTransformation() |
---|
[1622] | 706 | TRY |
---|
[619] | 707 | { |
---|
[621] | 708 | return (!transformationMap_.empty()); |
---|
[619] | 709 | } |
---|
[1622] | 710 | CATCH_DUMP_ATTR |
---|
[619] | 711 | |
---|
[1235] | 712 | /* |
---|
| 713 | Set transformation |
---|
| 714 | \param [in] axisTrans transformation to set |
---|
| 715 | */ |
---|
[621] | 716 | void CAxis::setTransformations(const TransMapTypes& axisTrans) |
---|
[1622] | 717 | TRY |
---|
[619] | 718 | { |
---|
[621] | 719 | transformationMap_ = axisTrans; |
---|
[619] | 720 | } |
---|
[1622] | 721 | CATCH_DUMP_ATTR |
---|
[619] | 722 | |
---|
[1235] | 723 | /* |
---|
| 724 | Return all transformation held by the axis |
---|
| 725 | \return transformation the axis has |
---|
| 726 | */ |
---|
[621] | 727 | CAxis::TransMapTypes CAxis::getAllTransformations(void) |
---|
[1622] | 728 | TRY |
---|
[620] | 729 | { |
---|
[621] | 730 | return transformationMap_; |
---|
| 731 | } |
---|
[1622] | 732 | CATCH_DUMP_ATTR |
---|
[620] | 733 | |
---|
[1235] | 734 | /* |
---|
| 735 | Duplicate transformation of another axis |
---|
| 736 | \param [in] src axis whose transformations are copied |
---|
| 737 | */ |
---|
[823] | 738 | void CAxis::duplicateTransformation(CAxis* src) |
---|
[1622] | 739 | TRY |
---|
[823] | 740 | { |
---|
| 741 | if (src->hasTransformation()) |
---|
| 742 | { |
---|
| 743 | this->setTransformations(src->getAllTransformations()); |
---|
| 744 | } |
---|
| 745 | } |
---|
[1622] | 746 | CATCH_DUMP_ATTR |
---|
[823] | 747 | |
---|
[747] | 748 | /*! |
---|
| 749 | * Go through the hierarchy to find the axis from which the transformations must be inherited |
---|
| 750 | */ |
---|
[1984] | 751 | void CAxis::solveInheritanceTransformation_old() |
---|
[1622] | 752 | TRY |
---|
[619] | 753 | { |
---|
[747] | 754 | if (hasTransformation() || !hasDirectAxisReference()) |
---|
| 755 | return; |
---|
[619] | 756 | |
---|
[747] | 757 | CAxis* axis = this; |
---|
[619] | 758 | std::vector<CAxis*> refAxis; |
---|
[747] | 759 | while (!axis->hasTransformation() && axis->hasDirectAxisReference()) |
---|
[619] | 760 | { |
---|
[747] | 761 | refAxis.push_back(axis); |
---|
| 762 | axis = axis->getDirectAxisReference(); |
---|
[619] | 763 | } |
---|
| 764 | |
---|
[747] | 765 | if (axis->hasTransformation()) |
---|
| 766 | for (size_t i = 0; i < refAxis.size(); ++i) |
---|
| 767 | refAxis[i]->setTransformations(axis->getAllTransformations()); |
---|
[619] | 768 | } |
---|
[1622] | 769 | CATCH_DUMP_ATTR |
---|
[619] | 770 | |
---|
[1984] | 771 | void CAxis::solveInheritanceTransformation() |
---|
| 772 | TRY |
---|
| 773 | { |
---|
| 774 | if (solveInheritanceTransformation_done_) return; |
---|
| 775 | else solveInheritanceTransformation_done_=true ; |
---|
| 776 | |
---|
| 777 | CAxis* axis = this; |
---|
| 778 | std::list<CAxis*> refAxis; |
---|
| 779 | bool out=false ; |
---|
| 780 | vector<StdString> excludedAttr; |
---|
| 781 | excludedAttr.push_back("axis_ref"); |
---|
| 782 | |
---|
| 783 | refAxis.push_front(axis) ; |
---|
| 784 | while (axis->hasDirectAxisReference() && !out) |
---|
| 785 | { |
---|
| 786 | CAxis* lastAxis=axis ; |
---|
| 787 | axis = axis->getDirectAxisReference(); |
---|
| 788 | axis->solveRefInheritance() ; |
---|
| 789 | if (!axis->SuperClass::isEqual(lastAxis,excludedAttr)) out=true ; |
---|
| 790 | refAxis.push_front(axis) ; |
---|
| 791 | } |
---|
| 792 | |
---|
| 793 | CTransformationPaths::TPath path ; |
---|
| 794 | auto& pathList = std::get<2>(path) ; |
---|
| 795 | std::get<0>(path) = EElement::AXIS ; |
---|
| 796 | std::get<1>(path) = refAxis.front()->getId() ; |
---|
| 797 | for (auto& axis : refAxis) |
---|
| 798 | { |
---|
| 799 | CAxis::TransMapTypes transformations = axis->getAllTransformations(); |
---|
| 800 | for(auto& transformation : transformations) pathList.push_back({transformation.second->getTransformationType(), |
---|
| 801 | transformation.second->getId()}) ; |
---|
| 802 | } |
---|
| 803 | transformationPaths_.addPath(path) ; |
---|
| 804 | |
---|
| 805 | } |
---|
| 806 | CATCH_DUMP_ATTR |
---|
| 807 | |
---|
[2206] | 808 | bool CAxis::activateFieldWorkflow(CGarbageCollector& gc) |
---|
| 809 | TRY |
---|
| 810 | { |
---|
| 811 | if (!axis_ref.isEmpty()) |
---|
| 812 | { |
---|
| 813 | CField* field=getFieldFromId(axis_ref) ; |
---|
| 814 | if (field!=nullptr) |
---|
| 815 | { |
---|
| 816 | bool ret = field->buildWorkflowGraph(gc) ; |
---|
| 817 | if (!ret) return false ; // cannot build workflow graph at this state |
---|
| 818 | } |
---|
| 819 | else |
---|
| 820 | { |
---|
| 821 | CAxis* axis = get(axis_ref) ; |
---|
| 822 | bool ret = axis->activateFieldWorkflow(gc) ; |
---|
| 823 | if (!ret) return false ; // cannot build workflow graph at this state |
---|
| 824 | axis_ref=axis->getId() ; // replace domain_ref by solved reference |
---|
| 825 | } |
---|
| 826 | } |
---|
| 827 | activateFieldWorkflow_done_=true ; |
---|
| 828 | return true ; |
---|
| 829 | } |
---|
| 830 | CATCH_DUMP_ATTR |
---|
| 831 | |
---|
| 832 | |
---|
[1345] | 833 | void CAxis::setContextClient(CContextClient* contextClient) |
---|
[1622] | 834 | TRY |
---|
[1345] | 835 | { |
---|
[1353] | 836 | if (clientsSet.find(contextClient)==clientsSet.end()) |
---|
| 837 | { |
---|
| 838 | clients.push_back(contextClient) ; |
---|
| 839 | clientsSet.insert(contextClient); |
---|
| 840 | } |
---|
[1622] | 841 | } |
---|
| 842 | CATCH_DUMP_ATTR |
---|
[1345] | 843 | |
---|
[619] | 844 | void CAxis::parse(xml::CXMLNode & node) |
---|
[1622] | 845 | TRY |
---|
[619] | 846 | { |
---|
| 847 | SuperClass::parse(node); |
---|
| 848 | |
---|
| 849 | if (node.goToChildElement()) |
---|
| 850 | { |
---|
[836] | 851 | StdString nodeElementName; |
---|
[619] | 852 | do |
---|
| 853 | { |
---|
[784] | 854 | StdString nodeId(""); |
---|
| 855 | if (node.getAttributes().end() != node.getAttributes().find("id")) |
---|
| 856 | { nodeId = node.getAttributes()["id"]; } |
---|
| 857 | |
---|
[836] | 858 | nodeElementName = node.getElementName(); |
---|
| 859 | std::map<StdString, ETranformationType>::const_iterator ite = transformationMapList_.end(), it; |
---|
| 860 | it = transformationMapList_.find(nodeElementName); |
---|
| 861 | if (ite != it) |
---|
| 862 | { |
---|
[2339] | 863 | if (it->first == "zoom_axis") |
---|
| 864 | { |
---|
| 865 | info(0) << "WARNING : " << it->first << " is deprecated, replaced by extract_axis." << endl; |
---|
| 866 | } |
---|
[836] | 867 | transformationMap_.push_back(std::make_pair(it->second, CTransformation<CAxis>::createTransformation(it->second, |
---|
| 868 | nodeId, |
---|
| 869 | &node))); |
---|
[786] | 870 | } |
---|
[968] | 871 | else |
---|
| 872 | { |
---|
| 873 | ERROR("void CAxis::parse(xml::CXMLNode & node)", |
---|
| 874 | << "The transformation " << nodeElementName << " has not been supported yet."); |
---|
| 875 | } |
---|
[619] | 876 | } while (node.goToNextElement()) ; |
---|
| 877 | node.goToParentElement(); |
---|
| 878 | } |
---|
| 879 | } |
---|
[1622] | 880 | CATCH_DUMP_ATTR |
---|
[619] | 881 | |
---|
[1930] | 882 | |
---|
| 883 | ////////////////////////////////////////////////////////////////////////////////////// |
---|
| 884 | // this part is related to distribution, element definition, views and connectors // |
---|
| 885 | ////////////////////////////////////////////////////////////////////////////////////// |
---|
| 886 | |
---|
| 887 | void CAxis::initializeLocalElement(void) |
---|
| 888 | { |
---|
| 889 | // after checkAttribute index of size n |
---|
| 890 | int rank = CContext::getCurrent()->getIntraCommRank() ; |
---|
| 891 | |
---|
| 892 | CArray<size_t,1> ind(n) ; |
---|
| 893 | for (int i=0;i<n;i++) ind(i)=index(i) ; |
---|
| 894 | |
---|
[2267] | 895 | localElement_ = make_shared<CLocalElement>(rank, n_glo, ind) ; |
---|
[1930] | 896 | } |
---|
| 897 | |
---|
| 898 | void CAxis::addFullView(void) |
---|
| 899 | { |
---|
| 900 | CArray<int,1> index(n) ; |
---|
| 901 | for(int i=0; i<n ; i++) index(i)=i ; |
---|
| 902 | localElement_ -> addView(CElementView::FULL, index) ; |
---|
| 903 | } |
---|
| 904 | |
---|
| 905 | void CAxis::addWorkflowView(void) |
---|
| 906 | { |
---|
| 907 | // mask + data are included into data_index |
---|
| 908 | int nk=data_index.numElements() ; |
---|
| 909 | int nMask=0 ; |
---|
| 910 | for(int k=0;k<nk;k++) if (data_index(k)>=0 && data_index(k)<n) nMask++ ; |
---|
| 911 | |
---|
| 912 | CArray<int,1> index(nMask) ; |
---|
| 913 | nMask=0 ; |
---|
| 914 | for(int k=0;k<nk;k++) |
---|
| 915 | if (data_index(k)>=0 && data_index(k)<n) |
---|
| 916 | { |
---|
| 917 | index(nMask) = data_index(k) ; |
---|
| 918 | nMask++ ; |
---|
| 919 | } |
---|
| 920 | localElement_ -> addView(CElementView::WORKFLOW, index) ; |
---|
| 921 | } |
---|
| 922 | |
---|
| 923 | void CAxis::addModelView(void) |
---|
| 924 | { |
---|
| 925 | // information for model view is stored in data_index |
---|
| 926 | localElement_->addView(CElementView::MODEL, data_index) ; |
---|
| 927 | } |
---|
| 928 | |
---|
| 929 | void CAxis::computeModelToWorkflowConnector(void) |
---|
| 930 | { |
---|
[2267] | 931 | shared_ptr<CLocalView> srcView=getLocalView(CElementView::MODEL) ; |
---|
| 932 | shared_ptr<CLocalView> dstView=getLocalView(CElementView::WORKFLOW) ; |
---|
| 933 | modelToWorkflowConnector_ = make_shared<CLocalConnector>(srcView, dstView); |
---|
[1930] | 934 | modelToWorkflowConnector_->computeConnector() ; |
---|
| 935 | } |
---|
| 936 | |
---|
| 937 | |
---|
| 938 | void CAxis::computeRemoteElement(CContextClient* client, EDistributionType type) |
---|
| 939 | { |
---|
| 940 | CContext* context = CContext::getCurrent(); |
---|
| 941 | map<int, CArray<size_t,1>> globalIndex ; |
---|
| 942 | |
---|
| 943 | if (type==EDistributionType::BANDS) // Bands distribution to send to file server |
---|
| 944 | { |
---|
[2343] | 945 | int nbServer = client->getRemoteSize(); |
---|
| 946 | int nbClient = client->getIntraCommSize() ; |
---|
| 947 | int rankClient = client->getIntraCommRank() ; |
---|
[1930] | 948 | int size = nbServer / nbClient ; |
---|
| 949 | int start ; |
---|
| 950 | if (nbServer%nbClient > rankClient) |
---|
| 951 | { |
---|
| 952 | start = (size+1) * rankClient ; |
---|
| 953 | size++ ; |
---|
| 954 | } |
---|
| 955 | else start = size*rankClient + nbServer%nbClient ; |
---|
| 956 | |
---|
| 957 | for(int i=0; i<size; i++) |
---|
| 958 | { |
---|
| 959 | int rank=start+i ; |
---|
| 960 | size_t indSize = n_glo/nbServer ; |
---|
| 961 | size_t indStart ; |
---|
| 962 | if (n_glo % nbServer > rank) |
---|
| 963 | { |
---|
| 964 | indStart = (indSize+1) * rank ; |
---|
| 965 | indSize++ ; |
---|
| 966 | } |
---|
| 967 | else indStart = indSize*rank + n_glo%nbServer ; |
---|
| 968 | |
---|
| 969 | auto& globalInd = globalIndex[rank] ; |
---|
| 970 | globalInd.resize(indSize) ; |
---|
| 971 | for(size_t n = 0 ; n<indSize; n++) globalInd(n)=indStart+n ; |
---|
| 972 | } |
---|
| 973 | } |
---|
| 974 | else if (type==EDistributionType::NONE) // domain is not distributed ie all servers get the same local domain |
---|
| 975 | { |
---|
[2343] | 976 | int nbServer = client->getRemoteSize(); |
---|
[1930] | 977 | size_t nglo=n_glo ; |
---|
| 978 | CArray<size_t,1> indGlo(nglo) ; |
---|
| 979 | for(size_t i=0;i<nglo;i++) indGlo(i) = i ; |
---|
[1939] | 980 | for (auto& rankServer : client->getRanksServerLeader()) globalIndex[rankServer].reference(indGlo.copy()); |
---|
[1930] | 981 | } |
---|
[2267] | 982 | remoteElement_[client] = make_shared<CDistributedElement>(n_glo, globalIndex) ; |
---|
[1930] | 983 | remoteElement_[client]->addFullView() ; |
---|
| 984 | } |
---|
| 985 | |
---|
[2397] | 986 | void CAxis::distributeToServer(CContextClient* client, bool inOut, std::map<int, CArray<size_t,1>>& globalIndexOut, std::map<int, CArray<size_t,1>>& globalIndexIn, |
---|
[2267] | 987 | shared_ptr<CScattererConnector> &scattererConnector, const string& axisId) |
---|
[1930] | 988 | { |
---|
| 989 | string serverAxisId = axisId.empty() ? this->getId() : axisId ; |
---|
| 990 | CContext* context = CContext::getCurrent(); |
---|
| 991 | |
---|
| 992 | this->sendAllAttributesToServer(client, serverAxisId) ; |
---|
| 993 | |
---|
[2304] | 994 | auto scatteredElement = make_shared<CDistributedElement>(n_glo,globalIndexOut) ; |
---|
[2267] | 995 | scatteredElement->addFullView() ; |
---|
| 996 | scattererConnector = make_shared<CScattererConnector>(localElement_->getView(CElementView::FULL), scatteredElement->getView(CElementView::FULL), |
---|
| 997 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
[1956] | 998 | scattererConnector->computeConnector() ; |
---|
[1930] | 999 | |
---|
| 1000 | // phase 0 |
---|
| 1001 | // send remote element to construct the full view on server, ie without hole |
---|
| 1002 | CEventClient event0(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1003 | CMessage message0 ; |
---|
| 1004 | message0<<serverAxisId<<0 ; |
---|
| 1005 | remoteElement_[client]->sendToServer(client,event0,message0) ; |
---|
| 1006 | |
---|
| 1007 | // phase 1 |
---|
| 1008 | // send the full view of element to construct the connector which connect distributed data coming from client to the full local view |
---|
| 1009 | CEventClient event1(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1010 | CMessage message1 ; |
---|
| 1011 | message1<<serverAxisId<<1<<localElement_->getView(CElementView::FULL)->getGlobalSize() ; |
---|
[1956] | 1012 | scattererConnector->transfer(localElement_->getView(CElementView::FULL)->getGlobalIndex(),client,event1,message1) ; |
---|
[1930] | 1013 | |
---|
[2267] | 1014 | sendDistributedAttributes(client, scattererConnector, axisId) ; |
---|
[1930] | 1015 | |
---|
| 1016 | // phase 2 send the mask : data index + mask2D |
---|
[2304] | 1017 | { |
---|
| 1018 | CArray<bool,1> maskIn(localElement_->getView(CElementView::WORKFLOW)->getSize()); |
---|
| 1019 | CArray<bool,1> maskOut ; |
---|
| 1020 | auto workflowToFull = make_shared<CLocalConnector>(localElement_->getView(CElementView::WORKFLOW), localElement_->getView(CElementView::FULL)) ; |
---|
| 1021 | workflowToFull->computeConnector() ; |
---|
| 1022 | maskIn=true ; |
---|
| 1023 | workflowToFull->transfer(maskIn,maskOut,false) ; |
---|
[1930] | 1024 | |
---|
[2304] | 1025 | // prepare grid scatterer connector to send data from client to server |
---|
| 1026 | map<int,CArray<size_t,1>> workflowGlobalIndex ; |
---|
| 1027 | map<int,CArray<bool,1>> maskOut2 ; |
---|
| 1028 | scattererConnector->transfer(maskOut, maskOut2) ; |
---|
| 1029 | scatteredElement->addView(CElementView::WORKFLOW, maskOut2) ; |
---|
| 1030 | scatteredElement->getView(CElementView::WORKFLOW)->getGlobalIndexView(workflowGlobalIndex) ; |
---|
| 1031 | // create new workflow view for scattered element |
---|
| 1032 | auto clientToServerElement = make_shared<CDistributedElement>(scatteredElement->getGlobalSize(), workflowGlobalIndex) ; |
---|
| 1033 | clientToServerElement->addFullView() ; |
---|
| 1034 | CEventClient event2(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1035 | CMessage message2 ; |
---|
| 1036 | message2<<serverAxisId<<2 ; |
---|
| 1037 | clientToServerElement->sendToServer(client, event2, message2) ; |
---|
| 1038 | clientToServerConnector_[client] = make_shared<CScattererConnector>(localElement_->getView(CElementView::WORKFLOW), clientToServerElement->getView(CElementView::FULL), |
---|
[2267] | 1039 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
[2304] | 1040 | clientToServerConnector_[client]->computeConnector() ; |
---|
| 1041 | } |
---|
[1930] | 1042 | |
---|
[2304] | 1043 | //////////// |
---|
| 1044 | // phase 3 : compute connector to receive from server |
---|
| 1045 | //////////// |
---|
[2397] | 1046 | if (inOut) |
---|
[2304] | 1047 | { |
---|
| 1048 | auto scatteredElement = make_shared<CDistributedElement>(n_glo, globalIndexIn) ; |
---|
| 1049 | scatteredElement->addFullView() ; |
---|
| 1050 | auto scattererConnector = make_shared<CScattererConnector>(localElement_->getView(CElementView::FULL), scatteredElement->getView(CElementView::FULL), |
---|
| 1051 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
| 1052 | scattererConnector->computeConnector() ; |
---|
| 1053 | CArray<bool,1> maskIn(localElement_->getView(CElementView::WORKFLOW)->getSize()); |
---|
| 1054 | CArray<bool,1> maskOut ; |
---|
| 1055 | auto workflowToFull = make_shared<CLocalConnector>(localElement_->getView(CElementView::WORKFLOW), localElement_->getView(CElementView::FULL)) ; |
---|
| 1056 | workflowToFull->computeConnector() ; |
---|
| 1057 | maskIn=true ; |
---|
| 1058 | workflowToFull->transfer(maskIn,maskOut,false) ; |
---|
[1930] | 1059 | |
---|
[2304] | 1060 | map<int,CArray<size_t,1>> workflowGlobalIndex ; |
---|
| 1061 | map<int,CArray<bool,1>> maskOut2 ; |
---|
| 1062 | scattererConnector->transfer(maskOut, maskOut2, false) ; |
---|
| 1063 | scatteredElement->addView(CElementView::WORKFLOW, maskOut2) ; |
---|
| 1064 | scatteredElement->getView(CElementView::WORKFLOW)->getGlobalIndexView(workflowGlobalIndex) ; |
---|
| 1065 | auto clientToServerElement = make_shared<CDistributedElement>(scatteredElement->getGlobalSize(), workflowGlobalIndex) ; |
---|
| 1066 | clientToServerElement->addFullView() ; |
---|
| 1067 | CEventClient event3(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1068 | CMessage message3 ; |
---|
| 1069 | message3<<serverAxisId<<3 ; |
---|
| 1070 | clientToServerElement->sendToServer(client, event3, message3) ; |
---|
[1930] | 1071 | |
---|
[2304] | 1072 | clientFromServerConnector_[client] = make_shared<CGathererConnector>(clientToServerElement->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)); |
---|
| 1073 | clientFromServerConnector_[client]->computeConnector() ; |
---|
| 1074 | } |
---|
| 1075 | |
---|
| 1076 | // clientFromServerConnector_[client] = make_shared<CGathererConnector>(clientToServerElement->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)); |
---|
| 1077 | // clientFromServerConnector_[client]->computeConnector() ; |
---|
| 1078 | |
---|
| 1079 | |
---|
[1930] | 1080 | } |
---|
| 1081 | |
---|
| 1082 | void CAxis::recvAxisDistribution(CEventServer& event) |
---|
| 1083 | TRY |
---|
| 1084 | { |
---|
| 1085 | string axisId; |
---|
| 1086 | int phasis ; |
---|
| 1087 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> axisId >> phasis ; |
---|
| 1088 | get(axisId)->receivedAxisDistribution(event, phasis); |
---|
| 1089 | } |
---|
| 1090 | CATCH |
---|
| 1091 | |
---|
| 1092 | |
---|
| 1093 | void CAxis::receivedAxisDistribution(CEventServer& event, int phasis) |
---|
| 1094 | TRY |
---|
| 1095 | { |
---|
| 1096 | CContext* context = CContext::getCurrent(); |
---|
| 1097 | if (phasis==0) // receive the remote element to construct the full view |
---|
| 1098 | { |
---|
[2267] | 1099 | localElement_ = make_shared<CLocalElement>(context->getIntraCommRank(),event) ; |
---|
[1930] | 1100 | localElement_->addFullView() ; |
---|
| 1101 | // construct the local dimension and indexes |
---|
| 1102 | auto& globalIndex=localElement_->getGlobalIndex() ; |
---|
| 1103 | int nk=globalIndex.numElements() ; |
---|
| 1104 | int minK=n_glo,maxK=-1 ; |
---|
| 1105 | int nGlo=n_glo ; |
---|
| 1106 | int indGlo ; |
---|
| 1107 | for(int k=0;k<nk;k++) |
---|
| 1108 | { |
---|
| 1109 | indGlo=globalIndex(k) ; |
---|
| 1110 | if (indGlo<minK) minK=indGlo ; |
---|
| 1111 | if (indGlo>maxK) maxK=indGlo ; |
---|
| 1112 | } |
---|
| 1113 | if (maxK>=minK) { begin=minK ; n=maxK-minK+1 ; } |
---|
| 1114 | else {begin=0; n=0 ;} |
---|
| 1115 | |
---|
| 1116 | } |
---|
| 1117 | else if (phasis==1) // receive the sent view from client to construct the full distributed full view on server |
---|
| 1118 | { |
---|
| 1119 | CContext* context = CContext::getCurrent(); |
---|
[2267] | 1120 | shared_ptr<CDistributedElement> elementFrom = make_shared<CDistributedElement>(event) ; |
---|
[1930] | 1121 | elementFrom->addFullView() ; |
---|
[2267] | 1122 | gathererConnector_ = make_shared<CGathererConnector>(elementFrom->getView(CElementView::FULL), localElement_->getView(CElementView::FULL)) ; |
---|
[1930] | 1123 | gathererConnector_->computeConnector() ; |
---|
| 1124 | } |
---|
| 1125 | else if (phasis==2) |
---|
| 1126 | { |
---|
[1956] | 1127 | // delete gathererConnector_ ; |
---|
[2267] | 1128 | elementFrom_ = make_shared<CDistributedElement>(event) ; |
---|
[1930] | 1129 | elementFrom_->addFullView() ; |
---|
[2267] | 1130 | // gathererConnector_ = make_shared<CGathererConnector>(elementFrom_->getView(CElementView::FULL), localElement_->getView(CElementView::FULL)) ; |
---|
[1956] | 1131 | // gathererConnector_ -> computeConnector() ; |
---|
[1930] | 1132 | } |
---|
[2397] | 1133 | else if (phasis==3) // only for server -> client |
---|
[2304] | 1134 | { |
---|
| 1135 | elementTo_ = make_shared<CDistributedElement>(event) ; |
---|
| 1136 | elementTo_->addFullView() ; |
---|
| 1137 | } |
---|
[1930] | 1138 | } |
---|
| 1139 | CATCH |
---|
| 1140 | |
---|
[1943] | 1141 | void CAxis::setServerMask(CArray<bool,1>& serverMask, CContextClient* client) |
---|
| 1142 | TRY |
---|
| 1143 | { |
---|
| 1144 | CContext* context = CContext::getCurrent(); |
---|
| 1145 | localElement_->addView(CElementView::WORKFLOW, serverMask) ; |
---|
| 1146 | mask.reference(serverMask.copy()) ; |
---|
| 1147 | |
---|
[2267] | 1148 | serverFromClientConnector_ = make_shared<CGathererConnector>(elementFrom_->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)) ; |
---|
[1943] | 1149 | serverFromClientConnector_->computeConnector() ; |
---|
[2397] | 1150 | elementFrom_.reset() ; |
---|
| 1151 | |
---|
| 1152 | if (elementTo_) |
---|
| 1153 | { |
---|
| 1154 | serverToClientConnector_ = make_shared<CScattererConnector>(localElement_->getView(CElementView::WORKFLOW), elementTo_->getView(CElementView::FULL), |
---|
[2267] | 1155 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
[2397] | 1156 | serverToClientConnector_->computeConnector() ; |
---|
| 1157 | elementTo_.reset() ; |
---|
| 1158 | } |
---|
[1943] | 1159 | } |
---|
| 1160 | CATCH_DUMP_ATTR |
---|
| 1161 | |
---|
[2267] | 1162 | void CAxis::sendDistributedAttributes(CContextClient* client, shared_ptr<CScattererConnector> scattererConnector, const string& axisId) |
---|
[1930] | 1163 | { |
---|
| 1164 | string serverAxisId = axisId.empty() ? this->getId() : axisId ; |
---|
| 1165 | CContext* context = CContext::getCurrent(); |
---|
| 1166 | |
---|
[2507] | 1167 | if (hasValue_) |
---|
[1930] | 1168 | { |
---|
| 1169 | { // send level value |
---|
| 1170 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
| 1171 | CMessage message ; |
---|
| 1172 | message<<serverAxisId<<string("value") ; |
---|
[2267] | 1173 | scattererConnector->transfer(value, client, event,message) ; |
---|
[1930] | 1174 | } |
---|
| 1175 | } |
---|
| 1176 | |
---|
[2507] | 1177 | if (hasBounds_) |
---|
[1930] | 1178 | { |
---|
| 1179 | { // send bounds level value |
---|
| 1180 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
| 1181 | CMessage message ; |
---|
| 1182 | message<<serverAxisId<<string("bounds") ; |
---|
[2267] | 1183 | scattererConnector->transfer(2, bounds, client, event,message) ; |
---|
[1930] | 1184 | } |
---|
| 1185 | } |
---|
| 1186 | |
---|
[2507] | 1187 | if (hasLabel_) |
---|
[1930] | 1188 | { |
---|
| 1189 | { // send label |
---|
[1950] | 1190 | // need to transform array of string (no fixed size for string) into array of array of char |
---|
| 1191 | // to use connector to transfer |
---|
| 1192 | // the strings must have fixed size which the maximum lenght over the string label. |
---|
| 1193 | int maxSize=0 ; |
---|
| 1194 | for(int i=0; i<label.numElements();i++) |
---|
| 1195 | if (maxSize < label(i).size()) maxSize=label(i).size() ; |
---|
| 1196 | MPI_Allreduce(MPI_IN_PLACE, &maxSize,1,MPI_INT,MPI_MAX, context->getIntraComm()) ; |
---|
| 1197 | maxSize=maxSize+1 ; |
---|
| 1198 | CArray<char,2> charArray(maxSize,label.numElements()) ; |
---|
| 1199 | for(int j=0; j<label.numElements();j++) |
---|
| 1200 | { |
---|
| 1201 | const char* str = label(j).c_str() ; |
---|
| 1202 | int strSize=label(j).size()+1 ; |
---|
| 1203 | for(int i=0; i<strSize; i++) charArray(i,j) = str[i] ; |
---|
| 1204 | } |
---|
[1930] | 1205 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
| 1206 | CMessage message ; |
---|
[1950] | 1207 | message<<serverAxisId<<string("label")<<maxSize ; |
---|
[2267] | 1208 | scattererConnector->transfer(maxSize, charArray, client, event,message) ; |
---|
[1930] | 1209 | } |
---|
| 1210 | } |
---|
| 1211 | } |
---|
| 1212 | |
---|
| 1213 | void CAxis::recvDistributedAttributes(CEventServer& event) |
---|
| 1214 | TRY |
---|
| 1215 | { |
---|
| 1216 | string axisId; |
---|
| 1217 | string type ; |
---|
| 1218 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> axisId >> type ; |
---|
| 1219 | get(axisId)->recvDistributedAttributes(event, type); |
---|
| 1220 | } |
---|
| 1221 | CATCH |
---|
| 1222 | |
---|
| 1223 | void CAxis::recvDistributedAttributes(CEventServer& event, const string& type) |
---|
| 1224 | TRY |
---|
| 1225 | { |
---|
| 1226 | if (type=="value") |
---|
| 1227 | { |
---|
| 1228 | gathererConnector_->transfer(event, value, 0.); |
---|
| 1229 | } |
---|
| 1230 | else if (type=="bounds") |
---|
| 1231 | { |
---|
| 1232 | CArray<double,1> value ; |
---|
| 1233 | gathererConnector_->transfer(event, 2, value, 0.); |
---|
| 1234 | bounds.resize(2,n) ; |
---|
[1950] | 1235 | if (bounds.numElements() > 0 ) bounds=CArray<double,2>(value.dataFirst(),shape(2,n),neverDeleteData) ; |
---|
[1930] | 1236 | } |
---|
| 1237 | else if (type=="label") |
---|
| 1238 | { |
---|
[1950] | 1239 | int maxSize ; |
---|
| 1240 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> maxSize ; |
---|
| 1241 | CArray<char,1> value ; |
---|
| 1242 | gathererConnector_->transfer(event, maxSize, value, '\0'); |
---|
| 1243 | CArray<char,2> charArray(maxSize,n) ; |
---|
| 1244 | label.resize(n) ; |
---|
| 1245 | if (n>0) |
---|
| 1246 | { |
---|
| 1247 | charArray=CArray<char,2>(value.dataFirst(),shape(maxSize,n),neverDeleteData) ; |
---|
| 1248 | for(int j=0;j<n;j++) |
---|
| 1249 | { |
---|
| 1250 | int strSize ; |
---|
| 1251 | for(int i=0;i<maxSize;i++) |
---|
| 1252 | if (charArray(i,j)=='\0') { strSize=i ; break; } |
---|
| 1253 | string str(strSize,'\0') ; |
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| 1254 | for(int i=0;i<strSize;i++) str[i]=charArray(i,j) ; |
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| 1255 | label(j)=str ; |
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| 1256 | } |
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| 1257 | } |
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[1930] | 1258 | } |
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| 1259 | } |
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| 1260 | CATCH |
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| 1261 | |
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[620] | 1262 | DEFINE_REF_FUNC(Axis,axis) |
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[619] | 1263 | |
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[219] | 1264 | ///--------------------------------------------------------------- |
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| 1265 | |
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[335] | 1266 | } // namespace xios |
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