[219] | 1 | #include "axis.hpp" |
---|
| 2 | |
---|
[352] | 3 | #include "attribute_template.hpp" |
---|
| 4 | #include "object_template.hpp" |
---|
| 5 | #include "group_template.hpp" |
---|
| 6 | #include "message.hpp" |
---|
| 7 | #include "type.hpp" |
---|
[567] | 8 | #include "context.hpp" |
---|
| 9 | #include "context_client.hpp" |
---|
[676] | 10 | #include "context_server.hpp" |
---|
[591] | 11 | #include "xios_spl.hpp" |
---|
[633] | 12 | #include "server_distribution_description.hpp" |
---|
| 13 | #include "client_server_mapping_distributed.hpp" |
---|
[676] | 14 | #include "distribution_client.hpp" |
---|
[219] | 15 | |
---|
[2203] | 16 | #include <algorithm> |
---|
| 17 | #include <regex> |
---|
| 18 | |
---|
[335] | 19 | namespace xios { |
---|
[540] | 20 | |
---|
[1421] | 21 | /// ////////////////////// Definitions ////////////////////// /// |
---|
[219] | 22 | |
---|
| 23 | CAxis::CAxis(void) |
---|
| 24 | : CObjectTemplate<CAxis>() |
---|
[1975] | 25 | , CAxisAttributes(), isChecked(false), relFiles() |
---|
[1235] | 26 | , hasBounds(false), isCompressible_(false) |
---|
[1202] | 27 | , transformationMap_(), hasValue(false), hasLabel(false) |
---|
[1975] | 28 | , clients() |
---|
[621] | 29 | { |
---|
| 30 | } |
---|
[219] | 31 | |
---|
| 32 | CAxis::CAxis(const StdString & id) |
---|
| 33 | : CObjectTemplate<CAxis>(id) |
---|
[1975] | 34 | , CAxisAttributes(), isChecked(false), relFiles() |
---|
[1235] | 35 | , hasBounds(false), isCompressible_(false) |
---|
[1202] | 36 | , transformationMap_(), hasValue(false), hasLabel(false) |
---|
[1975] | 37 | , clients() |
---|
[621] | 38 | { |
---|
| 39 | } |
---|
[219] | 40 | |
---|
| 41 | CAxis::~CAxis(void) |
---|
| 42 | { /* Ne rien faire de plus */ } |
---|
| 43 | |
---|
[836] | 44 | std::map<StdString, ETranformationType> CAxis::transformationMapList_ = std::map<StdString, ETranformationType>(); |
---|
| 45 | bool CAxis::dummyTransformationMapList_ = CAxis::initializeTransformationMap(CAxis::transformationMapList_); |
---|
| 46 | bool CAxis::initializeTransformationMap(std::map<StdString, ETranformationType>& m) |
---|
[1622] | 47 | TRY |
---|
[836] | 48 | { |
---|
[2339] | 49 | m["zoom_axis"] = TRANS_EXTRACT_AXIS; |
---|
[836] | 50 | m["interpolate_axis"] = TRANS_INTERPOLATE_AXIS; |
---|
[1558] | 51 | m["extract_axis"] = TRANS_EXTRACT_AXIS; |
---|
[836] | 52 | m["inverse_axis"] = TRANS_INVERSE_AXIS; |
---|
[895] | 53 | m["reduce_domain"] = TRANS_REDUCE_DOMAIN_TO_AXIS; |
---|
[1301] | 54 | m["reduce_axis"] = TRANS_REDUCE_AXIS_TO_AXIS; |
---|
[895] | 55 | m["extract_domain"] = TRANS_EXTRACT_DOMAIN_TO_AXIS; |
---|
[1275] | 56 | m["temporal_splitting"] = TRANS_TEMPORAL_SPLITTING; |
---|
[1314] | 57 | m["duplicate_scalar"] = TRANS_DUPLICATE_SCALAR_TO_AXIS; |
---|
[2196] | 58 | return true; |
---|
[836] | 59 | } |
---|
[1622] | 60 | CATCH |
---|
[2274] | 61 | |
---|
| 62 | void CAxis::releaseStaticAllocation(void) |
---|
| 63 | { |
---|
| 64 | transformationMapList_.clear() ; |
---|
| 65 | CTransformation<CAxis>::unregisterAllTransformations() ; |
---|
| 66 | CGridTransformationFactory<CAxis>::unregisterAllTransformations() ; |
---|
| 67 | } |
---|
[836] | 68 | |
---|
[219] | 69 | ///--------------------------------------------------------------- |
---|
[1158] | 70 | |
---|
| 71 | const std::set<StdString> & CAxis::getRelFiles(void) const |
---|
[1622] | 72 | TRY |
---|
[1158] | 73 | { |
---|
| 74 | return (this->relFiles); |
---|
| 75 | } |
---|
[1622] | 76 | CATCH |
---|
[1158] | 77 | |
---|
[219] | 78 | bool CAxis::IsWritten(const StdString & filename) const |
---|
[1622] | 79 | TRY |
---|
[219] | 80 | { |
---|
| 81 | return (this->relFiles.find(filename) != this->relFiles.end()); |
---|
| 82 | } |
---|
[1622] | 83 | CATCH |
---|
[219] | 84 | |
---|
[676] | 85 | bool CAxis::isWrittenCompressed(const StdString& filename) const |
---|
[1622] | 86 | TRY |
---|
[676] | 87 | { |
---|
| 88 | return (this->relFilesCompressed.find(filename) != this->relFilesCompressed.end()); |
---|
| 89 | } |
---|
[1622] | 90 | CATCH |
---|
[676] | 91 | |
---|
[594] | 92 | bool CAxis::isDistributed(void) const |
---|
[1622] | 93 | TRY |
---|
[594] | 94 | { |
---|
[1158] | 95 | bool distributed = (!this->begin.isEmpty() && !this->n.isEmpty() && (this->begin + this->n < this->n_glo)) || |
---|
| 96 | (!this->n.isEmpty() && (this->n != this->n_glo)); |
---|
[1622] | 97 | // A condition to make sure that if there is only one client, axis |
---|
[1158] | 98 | // should be considered to be distributed. This should be a temporary solution |
---|
[1787] | 99 | distributed |= (1 == CContext::getCurrent()->intraCommSize_); |
---|
[1158] | 100 | return distributed; |
---|
[594] | 101 | } |
---|
[1622] | 102 | CATCH |
---|
[594] | 103 | |
---|
[676] | 104 | /*! |
---|
[1956] | 105 | * Compute if the axis can be ouput in a compressed way. |
---|
| 106 | * In this case the workflow view on server side must be the same |
---|
| 107 | * than the full view for all context rank. The result is stored on |
---|
| 108 | * internal isCompressible_ attribute. |
---|
[676] | 109 | */ |
---|
[1956] | 110 | void CAxis::computeIsCompressible(void) |
---|
[1622] | 111 | TRY |
---|
[676] | 112 | { |
---|
[1956] | 113 | // mesh is compressible contains some masked or indexed value, ie if full view is different of workflow view. |
---|
| 114 | // But now assume that the size of the 2 view must be equal for everybody. True on server side |
---|
| 115 | int isSameView = getLocalView(CElementView::FULL)->getSize() == getLocalView(CElementView::WORKFLOW)->getSize(); |
---|
| 116 | MPI_Allreduce(MPI_IN_PLACE, &isSameView, 1, MPI_INT, MPI_LAND, CContext::getCurrent()->getIntraComm()) ; |
---|
| 117 | if (isSameView) isCompressible_ = false ; |
---|
| 118 | else isCompressible_ = true ; |
---|
| 119 | isCompressibleComputed_=true ; |
---|
[676] | 120 | } |
---|
[1622] | 121 | CATCH |
---|
[676] | 122 | |
---|
[219] | 123 | void CAxis::addRelFile(const StdString & filename) |
---|
[1622] | 124 | TRY |
---|
[219] | 125 | { |
---|
| 126 | this->relFiles.insert(filename); |
---|
| 127 | } |
---|
[1622] | 128 | CATCH_DUMP_ATTR |
---|
[219] | 129 | |
---|
[676] | 130 | void CAxis::addRelFileCompressed(const StdString& filename) |
---|
[1622] | 131 | TRY |
---|
[676] | 132 | { |
---|
| 133 | this->relFilesCompressed.insert(filename); |
---|
| 134 | } |
---|
[1622] | 135 | CATCH_DUMP_ATTR |
---|
[676] | 136 | |
---|
[1975] | 137 | //---------------------------------------------------------------- |
---|
[219] | 138 | |
---|
[676] | 139 | /*! |
---|
[731] | 140 | * Compute the minimum buffer size required to send the attributes to the server(s). |
---|
| 141 | * |
---|
| 142 | * \return A map associating the server rank with its minimum buffer size. |
---|
| 143 | */ |
---|
[1371] | 144 | std::map<int, StdSize> CAxis::getAttributesBufferSize(CContextClient* client, const std::vector<int>& globalDim, int orderPositionInGrid, |
---|
| 145 | CServerDistributionDescription::ServerDistributionType distType) |
---|
[1622] | 146 | TRY |
---|
[731] | 147 | { |
---|
| 148 | |
---|
[1330] | 149 | std::map<int, StdSize> attributesSizes = getMinimumBufferSizeForAttributes(client); |
---|
[731] | 150 | |
---|
[1371] | 151 | // bool isNonDistributed = (n_glo == n); |
---|
| 152 | bool isDistributed = (orderPositionInGrid == CServerDistributionDescription::defaultDistributedDimension(globalDim.size(), distType)) |
---|
| 153 | || (index.numElements() != n_glo); |
---|
[731] | 154 | |
---|
| 155 | if (client->isServerLeader()) |
---|
| 156 | { |
---|
| 157 | // size estimation for sendServerAttribut |
---|
| 158 | size_t size = 6 * sizeof(size_t); |
---|
| 159 | // size estimation for sendNonDistributedValue |
---|
[1371] | 160 | if (!isDistributed) |
---|
| 161 | { |
---|
| 162 | // size = std::max(size, CArray<double,1>::size(n_glo) + (isCompressible_ ? CArray<int,1>::size(n_glo) : 0)); |
---|
| 163 | size += CArray<int,1>::size(n_glo); |
---|
| 164 | size += CArray<int,1>::size(n_glo); |
---|
| 165 | size += CArray<bool,1>::size(n_glo); |
---|
| 166 | size += CArray<double,1>::size(n_glo); |
---|
| 167 | if (hasBounds) |
---|
| 168 | size += CArray<double,2>::size(2*n_glo); |
---|
| 169 | if (hasLabel) |
---|
| 170 | size += CArray<StdString,1>::size(n_glo); |
---|
| 171 | } |
---|
[731] | 172 | size += CEventClient::headerSize + getId().size() + sizeof(size_t); |
---|
| 173 | |
---|
| 174 | const std::list<int>& ranks = client->getRanksServerLeader(); |
---|
| 175 | for (std::list<int>::const_iterator itRank = ranks.begin(), itRankEnd = ranks.end(); itRank != itRankEnd; ++itRank) |
---|
| 176 | { |
---|
| 177 | if (size > attributesSizes[*itRank]) |
---|
| 178 | attributesSizes[*itRank] = size; |
---|
| 179 | } |
---|
[1371] | 180 | const std::list<int>& ranksNonLeaders = client->getRanksServerNotLeader(); |
---|
| 181 | for (std::list<int>::const_iterator itRank = ranksNonLeaders.begin(), itRankEnd = ranksNonLeaders.end(); itRank != itRankEnd; ++itRank) |
---|
| 182 | { |
---|
| 183 | if (size > attributesSizes[*itRank]) |
---|
| 184 | attributesSizes[*itRank] = size; |
---|
| 185 | } |
---|
| 186 | |
---|
[731] | 187 | } |
---|
| 188 | |
---|
[1371] | 189 | if (isDistributed) |
---|
[731] | 190 | { |
---|
| 191 | // size estimation for sendDistributedValue |
---|
[2343] | 192 | std::unordered_map<int, vector<size_t> >::const_iterator it, ite = indSrv_[client->getRemoteSize()].end(); |
---|
| 193 | for (it = indSrv_[client->getRemoteSize()].begin(); it != ite; ++it) |
---|
[731] | 194 | { |
---|
[1371] | 195 | size_t size = 6 * sizeof(size_t); |
---|
| 196 | size += CArray<int,1>::size(it->second.size()); |
---|
| 197 | size += CArray<int,1>::size(it->second.size()); |
---|
| 198 | size += CArray<bool,1>::size(it->second.size()); |
---|
| 199 | size += CArray<double,1>::size(it->second.size()); |
---|
[1235] | 200 | if (hasBounds) |
---|
[1371] | 201 | size += CArray<double,2>::size(2 * it->second.size()); |
---|
[1158] | 202 | if (hasLabel) |
---|
[1371] | 203 | size += CArray<StdString,1>::size(it->second.size()); |
---|
[731] | 204 | |
---|
[1371] | 205 | size += CEventClient::headerSize + getId().size() + sizeof(size_t); |
---|
[731] | 206 | if (size > attributesSizes[it->first]) |
---|
| 207 | attributesSizes[it->first] = size; |
---|
| 208 | } |
---|
| 209 | } |
---|
| 210 | return attributesSizes; |
---|
| 211 | } |
---|
[1622] | 212 | CATCH_DUMP_ATTR |
---|
[731] | 213 | |
---|
| 214 | //---------------------------------------------------------------- |
---|
| 215 | |
---|
[219] | 216 | StdString CAxis::GetName(void) { return (StdString("axis")); } |
---|
| 217 | StdString CAxis::GetDefName(void){ return (CAxis::GetName()); } |
---|
| 218 | ENodeType CAxis::GetType(void) { return (eAxis); } |
---|
| 219 | |
---|
| 220 | //---------------------------------------------------------------- |
---|
| 221 | |
---|
[622] | 222 | CAxis* CAxis::createAxis() |
---|
[1622] | 223 | TRY |
---|
[622] | 224 | { |
---|
| 225 | CAxis* axis = CAxisGroup::get("axis_definition")->createChild(); |
---|
| 226 | return axis; |
---|
| 227 | } |
---|
[1622] | 228 | CATCH |
---|
[622] | 229 | |
---|
[2206] | 230 | CAxis* CAxis::get(const string& id, bool noError) |
---|
[2203] | 231 | { |
---|
| 232 | const regex r("::"); |
---|
| 233 | smatch m; |
---|
| 234 | if (regex_search(id, m, r)) |
---|
| 235 | { |
---|
| 236 | if (m.size()!=1) ERROR("CAxis* CAxis::get(string& id)", <<" id = "<<id<< " -> bad format id, separator :: append more than one time"); |
---|
| 237 | string fieldId=m.prefix() ; |
---|
| 238 | if (fieldId.empty()) ERROR("CAxis* CAxis::get(string& id)", <<" id = "<<id<< " -> bad format id, field name is empty"); |
---|
| 239 | string suffix=m.suffix() ; |
---|
[2206] | 240 | if (!CField::has(fieldId)) |
---|
| 241 | if (noError) return nullptr ; |
---|
| 242 | else ERROR("CAxis* CAxis::get(string& id, bool noError)", <<" id = "<<id<< " -> field Id : < "<<fieldId<<" > doesn't exist"); |
---|
[2203] | 243 | CField* field=CField::get(fieldId) ; |
---|
[2206] | 244 | return field->getAssociatedAxis(suffix, noError) ; |
---|
[2203] | 245 | } |
---|
[2206] | 246 | { |
---|
| 247 | if (noError) if(!CObjectFactory::HasObject<CAxis>(id)) return nullptr ; |
---|
| 248 | return CObjectFactory::GetObject<CAxis>(id).get(); |
---|
| 249 | } |
---|
[2203] | 250 | } |
---|
[2206] | 251 | |
---|
| 252 | bool CAxis::has(const string& id) |
---|
| 253 | { |
---|
| 254 | if (CAxis::get(id,true)==nullptr) return false ; |
---|
| 255 | else return true ; |
---|
| 256 | } |
---|
| 257 | |
---|
| 258 | CField* CAxis::getFieldFromId(const string& id) |
---|
| 259 | { |
---|
| 260 | const regex r("::"); |
---|
| 261 | smatch m; |
---|
| 262 | if (regex_search(id, m, r)) |
---|
| 263 | { |
---|
| 264 | if (m.size()!=1) ERROR("CField* CAxis::getFieldFromId(const string& id)", <<" id = "<<id<< " -> bad format id, separator :: append more than one time"); |
---|
| 265 | string fieldId=m.prefix() ; |
---|
| 266 | if (fieldId.empty()) ERROR("CField* CAxis::getFieldFromId(const string& id)", <<" id = "<<id<< " -> bad format id, field name is empty"); |
---|
| 267 | string suffix=m.suffix() ; |
---|
| 268 | CField* field=CField::get(fieldId) ; |
---|
| 269 | return field ; |
---|
| 270 | } |
---|
| 271 | else return nullptr; |
---|
| 272 | } |
---|
[2203] | 273 | |
---|
[1144] | 274 | /*! |
---|
| 275 | Check common attributes of an axis. |
---|
| 276 | This check should be done in the very beginning of work flow |
---|
| 277 | */ |
---|
[2291] | 278 | |
---|
[219] | 279 | void CAxis::checkAttributes(void) |
---|
[2291] | 280 | { |
---|
| 281 | if (checkAttributes_done_) return ; |
---|
| 282 | checkGeometricAttributes(true) ; |
---|
| 283 | initializeLocalElement() ; |
---|
| 284 | addFullView() ; |
---|
| 285 | addWorkflowView() ; |
---|
| 286 | addModelView() ; |
---|
| 287 | |
---|
| 288 | checkAttributes_done_ = true ; |
---|
| 289 | } |
---|
| 290 | |
---|
| 291 | void CAxis::resetGeometricAttributes(void) |
---|
| 292 | { |
---|
| 293 | n_glo.reset(); |
---|
| 294 | index.reset(); |
---|
| 295 | n.reset(); |
---|
| 296 | begin.reset(); |
---|
| 297 | mask.reset(); |
---|
| 298 | data_index.reset(); |
---|
| 299 | data_n.reset(); |
---|
| 300 | data_begin.reset(); |
---|
| 301 | value.reset(); |
---|
| 302 | bounds.reset(); |
---|
| 303 | label.reset() ; |
---|
| 304 | } |
---|
| 305 | |
---|
[2388] | 306 | size_t CAxis::computeAttributesHash( MPI_Comm comm ) |
---|
[2386] | 307 | { |
---|
| 308 | // Compute the hash of distributed attributs (value ...) |
---|
| 309 | int globalSize = this->n_glo.getValue(); |
---|
| 310 | CArray<size_t,1> globalIndex; // No redundancy globalIndex will be computed with the connector |
---|
| 311 | shared_ptr<CGridTransformConnector> gridTransformConnector; |
---|
| 312 | // Compute a without redundancy element FULL view to enable a consistent hash computation (and a distributed globalIndex) |
---|
| 313 | this->getLocalView(CElementView::FULL)->createWithoutRedundancyFullViewConnector( globalSize, comm, gridTransformConnector, globalIndex ); |
---|
| 314 | int localSize = globalIndex.numElements(); |
---|
| 315 | |
---|
| 316 | CArray<double,1> distributedValue ; |
---|
| 317 | gridTransformConnector->transfer(this->value, distributedValue ); |
---|
| 318 | |
---|
[2388] | 319 | size_t localHash = 0; |
---|
[2386] | 320 | for (int iloc=0; iloc<localSize ; iloc++ ) localHash+=globalIndex(iloc)*distributedValue(iloc); |
---|
[2388] | 321 | size_t distributedHash = 0; |
---|
| 322 | MPI_Allreduce( &localHash, &distributedHash, 1, MPI_UNSIGNED_LONG, MPI_SUM, comm ); |
---|
[2386] | 323 | |
---|
| 324 | // Compute the hash of global attributs (unit, prec ...) |
---|
| 325 | vector<StdString> excludedAttr; |
---|
| 326 | //excludedAttr.push_back("name"); |
---|
| 327 | // internal attributs |
---|
| 328 | excludedAttr.insert(excludedAttr.end(), { "index", "data_n", "data_begin", "data_index" }); |
---|
| 329 | excludedAttr.insert(excludedAttr.end(), { "begin", "n" }); |
---|
| 330 | excludedAttr.push_back("axis_ref"); |
---|
| 331 | // in distributed |
---|
| 332 | excludedAttr.push_back("value"); |
---|
| 333 | // should be considered in distributed |
---|
| 334 | excludedAttr.push_back("bounds"); |
---|
| 335 | excludedAttr.push_back("label"); |
---|
| 336 | excludedAttr.push_back("mask"); // ??? |
---|
| 337 | |
---|
[2388] | 338 | size_t globalHash = this->computeGlobalAttributesHash( excludedAttr ); |
---|
[2386] | 339 | |
---|
| 340 | return distributedHash + globalHash; |
---|
| 341 | } |
---|
[2389] | 342 | |
---|
| 343 | void CAxis::renameAttributesBeforeWriting(CAxis* writtenAxis) |
---|
| 344 | { |
---|
| 345 | if (writtenAxis!=NULL) |
---|
| 346 | { |
---|
| 347 | this->name = writtenAxis->getAxisOutputName(); |
---|
| 348 | // + label if necessary, other attributs concerned ? |
---|
| 349 | } |
---|
| 350 | else |
---|
| 351 | { |
---|
| 352 | this->name = this->getId(); |
---|
| 353 | // + label if necessary, other attributs concerned ? |
---|
| 354 | } |
---|
| 355 | } |
---|
| 356 | |
---|
[2291] | 357 | void CAxis::setGeometricAttributes(const CAxis& axisSrc) |
---|
| 358 | { |
---|
| 359 | resetGeometricAttributes() ; |
---|
| 360 | n_glo=axisSrc.n_glo; |
---|
| 361 | if (!axisSrc.index.isEmpty()) |
---|
| 362 | { |
---|
| 363 | index.resize(axisSrc.index.shape()) ; |
---|
| 364 | index=axisSrc.index; |
---|
| 365 | } |
---|
| 366 | |
---|
| 367 | n=axisSrc.n; |
---|
| 368 | begin=axisSrc.begin; |
---|
| 369 | if (!axisSrc.mask.isEmpty()) |
---|
| 370 | { |
---|
| 371 | mask.resize(axisSrc.mask.shape()) ; |
---|
| 372 | mask=axisSrc.mask; |
---|
| 373 | } |
---|
| 374 | if (!axisSrc.data_index.isEmpty()) |
---|
| 375 | { |
---|
| 376 | data_index.resize(axisSrc.data_index.shape()) ; |
---|
| 377 | data_index=axisSrc.data_index; |
---|
| 378 | } |
---|
| 379 | data_n=axisSrc.data_n; |
---|
| 380 | data_begin=axisSrc.data_begin; |
---|
| 381 | if (!axisSrc.value.isEmpty()) |
---|
| 382 | { |
---|
| 383 | value.resize(axisSrc.value.shape()) ; |
---|
| 384 | value=axisSrc.value; |
---|
| 385 | } |
---|
| 386 | |
---|
| 387 | if (!axisSrc.bounds.isEmpty()) |
---|
| 388 | { |
---|
| 389 | bounds.resize(axisSrc.bounds.shape()) ; |
---|
| 390 | bounds=axisSrc.bounds; |
---|
| 391 | } |
---|
| 392 | if (!axisSrc.label.isEmpty()) |
---|
| 393 | { |
---|
| 394 | label.resize(axisSrc.label.shape()) ; |
---|
| 395 | label=axisSrc.label; |
---|
| 396 | } |
---|
| 397 | |
---|
| 398 | } |
---|
| 399 | |
---|
| 400 | bool CAxis::checkGeometricAttributes(bool generateError) |
---|
[1622] | 401 | TRY |
---|
[219] | 402 | { |
---|
[1637] | 403 | CContext* context=CContext::getCurrent(); |
---|
| 404 | |
---|
| 405 | if (this->n_glo.isEmpty()) |
---|
[2291] | 406 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 407 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
---|
| 408 | << "The axis is wrongly defined, attribute 'n_glo' must be specified") |
---|
| 409 | else return false ; |
---|
[666] | 410 | StdSize size = this->n_glo.getValue(); |
---|
[540] | 411 | |
---|
[970] | 412 | if (!this->index.isEmpty()) |
---|
[551] | 413 | { |
---|
[970] | 414 | if (n.isEmpty()) n = index.numElements(); |
---|
| 415 | |
---|
| 416 | // It's not so correct but if begin is not the first value of index |
---|
| 417 | // then data on the local axis has user-defined distribution. In this case, begin has no meaning. |
---|
| 418 | if (begin.isEmpty()) begin = index(0); |
---|
[551] | 419 | } |
---|
[970] | 420 | else |
---|
| 421 | { |
---|
| 422 | if (!this->begin.isEmpty()) |
---|
| 423 | { |
---|
| 424 | if (begin < 0 || begin > size - 1) |
---|
[2291] | 425 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 426 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
---|
| 427 | << "The axis is wrongly defined, attribute 'begin' (" |
---|
| 428 | << begin.getValue() << ") must be non-negative and smaller than size-1 (" << size - 1 << ").") |
---|
| 429 | else return false ; |
---|
[970] | 430 | } |
---|
| 431 | else this->begin.setValue(0); |
---|
[551] | 432 | |
---|
[970] | 433 | if (!this->n.isEmpty()) |
---|
| 434 | { |
---|
| 435 | if (n < 0 || n > size) |
---|
[2291] | 436 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 437 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
---|
| 438 | << "The axis is wrongly defined, attribute 'n' (" << n.getValue() << ") must be non-negative and smaller than size (" |
---|
| 439 | << size << ").") |
---|
| 440 | else return false ; |
---|
[970] | 441 | } |
---|
| 442 | else this->n.setValue(size); |
---|
| 443 | |
---|
| 444 | { |
---|
| 445 | index.resize(n); |
---|
| 446 | for (int i = 0; i < n; ++i) index(i) = i+begin; |
---|
| 447 | } |
---|
[551] | 448 | } |
---|
[624] | 449 | |
---|
[816] | 450 | if (!this->value.isEmpty()) |
---|
| 451 | { |
---|
[1869] | 452 | StdSize true_size = value.numElements(); |
---|
| 453 | if (this->n.getValue() != true_size) |
---|
[2291] | 454 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 455 | << "[ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] " |
---|
| 456 | << "The axis is wrongly defined, attribute 'value' has a different size (" << true_size |
---|
| 457 | << ") than the one defined by the \'size\' attribute (" << n.getValue() << ").") |
---|
| 458 | else return false ; |
---|
[816] | 459 | this->hasValue = true; |
---|
| 460 | } |
---|
[219] | 461 | |
---|
[2291] | 462 | if (!this->checkBounds(generateError)) return false; |
---|
| 463 | if (!this->checkMask(generateError)) return false; |
---|
| 464 | if (!this->checkData(generateError)) return false; |
---|
| 465 | if (!this->checkLabel(generateError)) return false; |
---|
| 466 | |
---|
| 467 | return true ; |
---|
[219] | 468 | } |
---|
[1622] | 469 | CATCH_DUMP_ATTR |
---|
[219] | 470 | |
---|
[1918] | 471 | |
---|
[1144] | 472 | /*! |
---|
[1637] | 473 | Check the validity of data, fill in values if any, and apply mask. |
---|
[1144] | 474 | */ |
---|
[2291] | 475 | bool CAxis::checkData(bool generateError) |
---|
[1622] | 476 | TRY |
---|
[551] | 477 | { |
---|
| 478 | if (data_begin.isEmpty()) data_begin.setValue(0); |
---|
[679] | 479 | |
---|
| 480 | if (data_n.isEmpty()) |
---|
[551] | 481 | { |
---|
[679] | 482 | data_n.setValue(n); |
---|
| 483 | } |
---|
| 484 | else if (data_n.getValue() < 0) |
---|
| 485 | { |
---|
[2291] | 486 | if (generateError) ERROR("CAxis::checkData(void)", |
---|
| 487 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 488 | << "The data size should be strictly positive ('data_n' = " << data_n.getValue() << ").") |
---|
| 489 | else return false ; |
---|
[551] | 490 | } |
---|
| 491 | |
---|
| 492 | if (data_index.isEmpty()) |
---|
| 493 | { |
---|
[679] | 494 | data_index.resize(data_n); |
---|
[1637] | 495 | for (int i = 0; i < data_n; ++i) |
---|
| 496 | { |
---|
| 497 | if ((i+data_begin) >= 0 && (i+data_begin<n)) |
---|
| 498 | { |
---|
| 499 | if (mask(i+data_begin)) |
---|
| 500 | data_index(i) = i+data_begin; |
---|
| 501 | else |
---|
| 502 | data_index(i) = -1; |
---|
| 503 | } |
---|
| 504 | else |
---|
| 505 | data_index(i) = -1; |
---|
| 506 | } |
---|
[551] | 507 | } |
---|
[1637] | 508 | else |
---|
| 509 | { |
---|
| 510 | if (data_index.numElements() != data_n) |
---|
| 511 | { |
---|
[2291] | 512 | if (generateError) ERROR("CAxis::checkData(void)", |
---|
| 513 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 514 | << "The size of data_index = "<< data_index.numElements() << "is not equal to the data size data_n = " |
---|
| 515 | << data_n.getValue() << ").") |
---|
| 516 | else return false ; |
---|
[1637] | 517 | } |
---|
| 518 | for (int i = 0; i < data_n; ++i) |
---|
| 519 | { |
---|
[1872] | 520 | if (data_index(i) >= 0 && data_index(i)<n) |
---|
| 521 | if (!mask(data_index(i))) data_index(i) = -1; |
---|
[1637] | 522 | } |
---|
| 523 | } |
---|
[2291] | 524 | return true ; |
---|
[551] | 525 | } |
---|
[1622] | 526 | CATCH_DUMP_ATTR |
---|
[551] | 527 | |
---|
[2291] | 528 | /*! |
---|
| 529 | Check validity of mask info and fill in values if any. |
---|
| 530 | */ |
---|
| 531 | bool CAxis::checkMask(bool generateError) |
---|
[1622] | 532 | TRY |
---|
[551] | 533 | { |
---|
| 534 | if (!mask.isEmpty()) |
---|
| 535 | { |
---|
[1637] | 536 | if (mask.extent(0) != n) |
---|
| 537 | { |
---|
[2291] | 538 | if (generateError) ERROR("CAxis::checkMask(void)", |
---|
| 539 | << "[ id = " << this->getId() << " , context = '" << CObjectFactory::GetCurrentContextId() << " ] " |
---|
| 540 | << "The mask does not have the same size as the local domain." << std::endl |
---|
| 541 | << "Local size is " << n.getValue() << "." << std::endl |
---|
| 542 | << "Mask size is " << mask.extent(0) << ".") |
---|
| 543 | else return false ; |
---|
[1637] | 544 | } |
---|
[551] | 545 | } |
---|
[1637] | 546 | else |
---|
| 547 | { |
---|
| 548 | mask.resize(n); |
---|
| 549 | mask = true; |
---|
[551] | 550 | } |
---|
[2291] | 551 | return true ; |
---|
[551] | 552 | } |
---|
[1622] | 553 | CATCH_DUMP_ATTR |
---|
[551] | 554 | |
---|
[1144] | 555 | /*! |
---|
| 556 | Check validity of bounds info and fill in values if any. |
---|
| 557 | */ |
---|
[2291] | 558 | bool CAxis::checkBounds(bool generateError) |
---|
[1622] | 559 | TRY |
---|
[1144] | 560 | { |
---|
| 561 | if (!bounds.isEmpty()) |
---|
| 562 | { |
---|
| 563 | if (bounds.extent(0) != 2 || bounds.extent(1) != n) |
---|
[2291] | 564 | if (generateError) ERROR("CAxis::checkAttributes(void)", |
---|
| 565 | << "The bounds array of the axis [ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] must be of dimension 2 x axis size." << std::endl |
---|
| 566 | << "Axis size is " << n.getValue() << "." << std::endl |
---|
| 567 | << "Bounds size is "<< bounds.extent(0) << " x " << bounds.extent(1) << ".") |
---|
| 568 | else return false ; |
---|
[1235] | 569 | hasBounds = true; |
---|
[1144] | 570 | } |
---|
[1235] | 571 | else hasBounds = false; |
---|
[2291] | 572 | return true ; |
---|
[1144] | 573 | } |
---|
[1622] | 574 | CATCH_DUMP_ATTR |
---|
[633] | 575 | |
---|
[2291] | 576 | bool CAxis::checkLabel(bool generateError) |
---|
[1622] | 577 | TRY |
---|
[1158] | 578 | { |
---|
| 579 | if (!label.isEmpty()) |
---|
| 580 | { |
---|
| 581 | if (label.extent(0) != n) |
---|
[2291] | 582 | if (generateError) ERROR("CAxis::checkLabel(void)", |
---|
| 583 | << "The label array of the axis [ id = '" << getId() << "' , context = '" << CObjectFactory::GetCurrentContextId() << "' ] must be of dimension of axis size." << std::endl |
---|
| 584 | << "Axis size is " << n.getValue() << "." << std::endl |
---|
| 585 | << "label size is "<< label.extent(0)<< " .") |
---|
| 586 | else return false ; |
---|
[1158] | 587 | hasLabel = true; |
---|
| 588 | } |
---|
| 589 | else hasLabel = false; |
---|
[2291] | 590 | return true ; |
---|
[1158] | 591 | } |
---|
[1622] | 592 | CATCH_DUMP_ATTR |
---|
[1202] | 593 | |
---|
[2291] | 594 | |
---|
| 595 | size_t CAxis::getGlobalWrittenSize(void) |
---|
| 596 | { |
---|
| 597 | return n_glo ; |
---|
| 598 | } |
---|
| 599 | |
---|
| 600 | |
---|
| 601 | |
---|
[1956] | 602 | |
---|
[1235] | 603 | /*! |
---|
| 604 | Dispatch event from the lower communication layer then process event according to its type |
---|
| 605 | */ |
---|
| 606 | bool CAxis::dispatchEvent(CEventServer& event) |
---|
[1622] | 607 | TRY |
---|
[1235] | 608 | { |
---|
| 609 | if (SuperClass::dispatchEvent(event)) return true; |
---|
| 610 | else |
---|
| 611 | { |
---|
| 612 | switch(event.type) |
---|
| 613 | { |
---|
[1930] | 614 | case EVENT_ID_AXIS_DISTRIBUTION: |
---|
| 615 | recvAxisDistribution(event); |
---|
| 616 | return true; |
---|
| 617 | break; |
---|
| 618 | case EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE: |
---|
[1235] | 619 | recvDistributedAttributes(event); |
---|
| 620 | return true; |
---|
| 621 | break; |
---|
| 622 | default : |
---|
| 623 | ERROR("bool CAxis::dispatchEvent(CEventServer& event)", |
---|
| 624 | << "Unknown Event"); |
---|
| 625 | return false; |
---|
| 626 | } |
---|
| 627 | } |
---|
| 628 | } |
---|
[1622] | 629 | CATCH |
---|
[567] | 630 | |
---|
[1975] | 631 | /* to remove later when reimplementing coupling */ |
---|
[1875] | 632 | void CAxis::sendAxisToCouplerOut(CContextClient* client, const std::vector<int>& globalDim, int orderPositionInGrid, const string& fieldId, int posInGrid) |
---|
| 633 | { |
---|
[1975] | 634 | if (sendAxisToCouplerOut_done_.count(client)!=0) return ; |
---|
| 635 | else sendAxisToCouplerOut_done_.insert(client) ; |
---|
[1875] | 636 | |
---|
| 637 | string axisId="_axis["+std::to_string(posInGrid)+"]_of_"+fieldId ; |
---|
| 638 | |
---|
| 639 | } |
---|
| 640 | |
---|
[2022] | 641 | string CAxis::getCouplingAlias(const string& fieldId, int posInGrid) |
---|
| 642 | { |
---|
| 643 | return "_axis["+std::to_string(posInGrid)+"]_of_"+fieldId ; |
---|
| 644 | } |
---|
| 645 | |
---|
[1875] | 646 | void CAxis::makeAliasForCoupling(const string& fieldId, int posInGrid) |
---|
| 647 | { |
---|
[2022] | 648 | const string axisId = getCouplingAlias(fieldId,posInGrid) ; |
---|
[1875] | 649 | this->createAlias(axisId) ; |
---|
| 650 | } |
---|
| 651 | |
---|
[1975] | 652 | |
---|
[1144] | 653 | /*! |
---|
[1158] | 654 | Compare two axis objects. |
---|
| 655 | They are equal if only if they have identical attributes as well as their values. |
---|
| 656 | Moreover, they must have the same transformations. |
---|
| 657 | \param [in] axis Compared axis |
---|
| 658 | \return result of the comparison |
---|
| 659 | */ |
---|
| 660 | bool CAxis::isEqual(CAxis* obj) |
---|
[1622] | 661 | TRY |
---|
[1158] | 662 | { |
---|
| 663 | vector<StdString> excludedAttr; |
---|
| 664 | excludedAttr.push_back("axis_ref"); |
---|
[987] | 665 | |
---|
[1158] | 666 | bool objEqual = SuperClass::isEqual(obj, excludedAttr); |
---|
| 667 | if (!objEqual) return objEqual; |
---|
| 668 | |
---|
| 669 | TransMapTypes thisTrans = this->getAllTransformations(); |
---|
| 670 | TransMapTypes objTrans = obj->getAllTransformations(); |
---|
| 671 | |
---|
| 672 | TransMapTypes::const_iterator it, itb, ite; |
---|
| 673 | std::vector<ETranformationType> thisTransType, objTransType; |
---|
| 674 | for (it = thisTrans.begin(); it != thisTrans.end(); ++it) |
---|
| 675 | thisTransType.push_back(it->first); |
---|
| 676 | for (it = objTrans.begin(); it != objTrans.end(); ++it) |
---|
| 677 | objTransType.push_back(it->first); |
---|
| 678 | |
---|
| 679 | if (thisTransType.size() != objTransType.size()) return false; |
---|
| 680 | for (int idx = 0; idx < thisTransType.size(); ++idx) |
---|
| 681 | objEqual &= (thisTransType[idx] == objTransType[idx]); |
---|
| 682 | |
---|
| 683 | return objEqual; |
---|
| 684 | } |
---|
[1622] | 685 | CATCH_DUMP_ATTR |
---|
[1158] | 686 | |
---|
[1235] | 687 | /* |
---|
| 688 | Add transformation into axis. This function only servers for Fortran interface |
---|
| 689 | \param [in] transType transformation type |
---|
| 690 | \param [in] id identifier of the transformation object |
---|
| 691 | */ |
---|
[836] | 692 | CTransformation<CAxis>* CAxis::addTransformation(ETranformationType transType, const StdString& id) |
---|
[1622] | 693 | TRY |
---|
[836] | 694 | { |
---|
| 695 | transformationMap_.push_back(std::make_pair(transType, CTransformation<CAxis>::createTransformation(transType,id))); |
---|
| 696 | return transformationMap_.back().second; |
---|
| 697 | } |
---|
[1622] | 698 | CATCH_DUMP_ATTR |
---|
[836] | 699 | |
---|
[1235] | 700 | /* |
---|
| 701 | Check whether an axis has (spatial) transformation |
---|
| 702 | */ |
---|
[619] | 703 | bool CAxis::hasTransformation() |
---|
[1622] | 704 | TRY |
---|
[619] | 705 | { |
---|
[621] | 706 | return (!transformationMap_.empty()); |
---|
[619] | 707 | } |
---|
[1622] | 708 | CATCH_DUMP_ATTR |
---|
[619] | 709 | |
---|
[1235] | 710 | /* |
---|
| 711 | Set transformation |
---|
| 712 | \param [in] axisTrans transformation to set |
---|
| 713 | */ |
---|
[621] | 714 | void CAxis::setTransformations(const TransMapTypes& axisTrans) |
---|
[1622] | 715 | TRY |
---|
[619] | 716 | { |
---|
[621] | 717 | transformationMap_ = axisTrans; |
---|
[619] | 718 | } |
---|
[1622] | 719 | CATCH_DUMP_ATTR |
---|
[619] | 720 | |
---|
[1235] | 721 | /* |
---|
| 722 | Return all transformation held by the axis |
---|
| 723 | \return transformation the axis has |
---|
| 724 | */ |
---|
[621] | 725 | CAxis::TransMapTypes CAxis::getAllTransformations(void) |
---|
[1622] | 726 | TRY |
---|
[620] | 727 | { |
---|
[621] | 728 | return transformationMap_; |
---|
| 729 | } |
---|
[1622] | 730 | CATCH_DUMP_ATTR |
---|
[620] | 731 | |
---|
[1235] | 732 | /* |
---|
| 733 | Duplicate transformation of another axis |
---|
| 734 | \param [in] src axis whose transformations are copied |
---|
| 735 | */ |
---|
[823] | 736 | void CAxis::duplicateTransformation(CAxis* src) |
---|
[1622] | 737 | TRY |
---|
[823] | 738 | { |
---|
| 739 | if (src->hasTransformation()) |
---|
| 740 | { |
---|
| 741 | this->setTransformations(src->getAllTransformations()); |
---|
| 742 | } |
---|
| 743 | } |
---|
[1622] | 744 | CATCH_DUMP_ATTR |
---|
[823] | 745 | |
---|
[747] | 746 | /*! |
---|
| 747 | * Go through the hierarchy to find the axis from which the transformations must be inherited |
---|
| 748 | */ |
---|
[1984] | 749 | void CAxis::solveInheritanceTransformation_old() |
---|
[1622] | 750 | TRY |
---|
[619] | 751 | { |
---|
[747] | 752 | if (hasTransformation() || !hasDirectAxisReference()) |
---|
| 753 | return; |
---|
[619] | 754 | |
---|
[747] | 755 | CAxis* axis = this; |
---|
[619] | 756 | std::vector<CAxis*> refAxis; |
---|
[747] | 757 | while (!axis->hasTransformation() && axis->hasDirectAxisReference()) |
---|
[619] | 758 | { |
---|
[747] | 759 | refAxis.push_back(axis); |
---|
| 760 | axis = axis->getDirectAxisReference(); |
---|
[619] | 761 | } |
---|
| 762 | |
---|
[747] | 763 | if (axis->hasTransformation()) |
---|
| 764 | for (size_t i = 0; i < refAxis.size(); ++i) |
---|
| 765 | refAxis[i]->setTransformations(axis->getAllTransformations()); |
---|
[619] | 766 | } |
---|
[1622] | 767 | CATCH_DUMP_ATTR |
---|
[619] | 768 | |
---|
[1984] | 769 | void CAxis::solveInheritanceTransformation() |
---|
| 770 | TRY |
---|
| 771 | { |
---|
| 772 | if (solveInheritanceTransformation_done_) return; |
---|
| 773 | else solveInheritanceTransformation_done_=true ; |
---|
| 774 | |
---|
| 775 | CAxis* axis = this; |
---|
| 776 | std::list<CAxis*> refAxis; |
---|
| 777 | bool out=false ; |
---|
| 778 | vector<StdString> excludedAttr; |
---|
| 779 | excludedAttr.push_back("axis_ref"); |
---|
| 780 | |
---|
| 781 | refAxis.push_front(axis) ; |
---|
| 782 | while (axis->hasDirectAxisReference() && !out) |
---|
| 783 | { |
---|
| 784 | CAxis* lastAxis=axis ; |
---|
| 785 | axis = axis->getDirectAxisReference(); |
---|
| 786 | axis->solveRefInheritance() ; |
---|
| 787 | if (!axis->SuperClass::isEqual(lastAxis,excludedAttr)) out=true ; |
---|
| 788 | refAxis.push_front(axis) ; |
---|
| 789 | } |
---|
| 790 | |
---|
| 791 | CTransformationPaths::TPath path ; |
---|
| 792 | auto& pathList = std::get<2>(path) ; |
---|
| 793 | std::get<0>(path) = EElement::AXIS ; |
---|
| 794 | std::get<1>(path) = refAxis.front()->getId() ; |
---|
| 795 | for (auto& axis : refAxis) |
---|
| 796 | { |
---|
| 797 | CAxis::TransMapTypes transformations = axis->getAllTransformations(); |
---|
| 798 | for(auto& transformation : transformations) pathList.push_back({transformation.second->getTransformationType(), |
---|
| 799 | transformation.second->getId()}) ; |
---|
| 800 | } |
---|
| 801 | transformationPaths_.addPath(path) ; |
---|
| 802 | |
---|
| 803 | } |
---|
| 804 | CATCH_DUMP_ATTR |
---|
| 805 | |
---|
[2206] | 806 | bool CAxis::activateFieldWorkflow(CGarbageCollector& gc) |
---|
| 807 | TRY |
---|
| 808 | { |
---|
| 809 | if (!axis_ref.isEmpty()) |
---|
| 810 | { |
---|
| 811 | CField* field=getFieldFromId(axis_ref) ; |
---|
| 812 | if (field!=nullptr) |
---|
| 813 | { |
---|
| 814 | bool ret = field->buildWorkflowGraph(gc) ; |
---|
| 815 | if (!ret) return false ; // cannot build workflow graph at this state |
---|
| 816 | } |
---|
| 817 | else |
---|
| 818 | { |
---|
| 819 | CAxis* axis = get(axis_ref) ; |
---|
| 820 | bool ret = axis->activateFieldWorkflow(gc) ; |
---|
| 821 | if (!ret) return false ; // cannot build workflow graph at this state |
---|
| 822 | axis_ref=axis->getId() ; // replace domain_ref by solved reference |
---|
| 823 | } |
---|
| 824 | } |
---|
| 825 | activateFieldWorkflow_done_=true ; |
---|
| 826 | return true ; |
---|
| 827 | } |
---|
| 828 | CATCH_DUMP_ATTR |
---|
| 829 | |
---|
| 830 | |
---|
[1345] | 831 | void CAxis::setContextClient(CContextClient* contextClient) |
---|
[1622] | 832 | TRY |
---|
[1345] | 833 | { |
---|
[1353] | 834 | if (clientsSet.find(contextClient)==clientsSet.end()) |
---|
| 835 | { |
---|
| 836 | clients.push_back(contextClient) ; |
---|
| 837 | clientsSet.insert(contextClient); |
---|
| 838 | } |
---|
[1622] | 839 | } |
---|
| 840 | CATCH_DUMP_ATTR |
---|
[1345] | 841 | |
---|
[619] | 842 | void CAxis::parse(xml::CXMLNode & node) |
---|
[1622] | 843 | TRY |
---|
[619] | 844 | { |
---|
| 845 | SuperClass::parse(node); |
---|
| 846 | |
---|
| 847 | if (node.goToChildElement()) |
---|
| 848 | { |
---|
[836] | 849 | StdString nodeElementName; |
---|
[619] | 850 | do |
---|
| 851 | { |
---|
[784] | 852 | StdString nodeId(""); |
---|
| 853 | if (node.getAttributes().end() != node.getAttributes().find("id")) |
---|
| 854 | { nodeId = node.getAttributes()["id"]; } |
---|
| 855 | |
---|
[836] | 856 | nodeElementName = node.getElementName(); |
---|
| 857 | std::map<StdString, ETranformationType>::const_iterator ite = transformationMapList_.end(), it; |
---|
| 858 | it = transformationMapList_.find(nodeElementName); |
---|
| 859 | if (ite != it) |
---|
| 860 | { |
---|
[2339] | 861 | if (it->first == "zoom_axis") |
---|
| 862 | { |
---|
| 863 | info(0) << "WARNING : " << it->first << " is deprecated, replaced by extract_axis." << endl; |
---|
| 864 | } |
---|
[836] | 865 | transformationMap_.push_back(std::make_pair(it->second, CTransformation<CAxis>::createTransformation(it->second, |
---|
| 866 | nodeId, |
---|
| 867 | &node))); |
---|
[786] | 868 | } |
---|
[968] | 869 | else |
---|
| 870 | { |
---|
| 871 | ERROR("void CAxis::parse(xml::CXMLNode & node)", |
---|
| 872 | << "The transformation " << nodeElementName << " has not been supported yet."); |
---|
| 873 | } |
---|
[619] | 874 | } while (node.goToNextElement()) ; |
---|
| 875 | node.goToParentElement(); |
---|
| 876 | } |
---|
| 877 | } |
---|
[1622] | 878 | CATCH_DUMP_ATTR |
---|
[619] | 879 | |
---|
[1930] | 880 | |
---|
| 881 | ////////////////////////////////////////////////////////////////////////////////////// |
---|
| 882 | // this part is related to distribution, element definition, views and connectors // |
---|
| 883 | ////////////////////////////////////////////////////////////////////////////////////// |
---|
| 884 | |
---|
| 885 | void CAxis::initializeLocalElement(void) |
---|
| 886 | { |
---|
| 887 | // after checkAttribute index of size n |
---|
| 888 | int rank = CContext::getCurrent()->getIntraCommRank() ; |
---|
| 889 | |
---|
| 890 | CArray<size_t,1> ind(n) ; |
---|
| 891 | for (int i=0;i<n;i++) ind(i)=index(i) ; |
---|
| 892 | |
---|
[2267] | 893 | localElement_ = make_shared<CLocalElement>(rank, n_glo, ind) ; |
---|
[1930] | 894 | } |
---|
| 895 | |
---|
| 896 | void CAxis::addFullView(void) |
---|
| 897 | { |
---|
| 898 | CArray<int,1> index(n) ; |
---|
| 899 | for(int i=0; i<n ; i++) index(i)=i ; |
---|
| 900 | localElement_ -> addView(CElementView::FULL, index) ; |
---|
| 901 | } |
---|
| 902 | |
---|
| 903 | void CAxis::addWorkflowView(void) |
---|
| 904 | { |
---|
| 905 | // mask + data are included into data_index |
---|
| 906 | int nk=data_index.numElements() ; |
---|
| 907 | int nMask=0 ; |
---|
| 908 | for(int k=0;k<nk;k++) if (data_index(k)>=0 && data_index(k)<n) nMask++ ; |
---|
| 909 | |
---|
| 910 | CArray<int,1> index(nMask) ; |
---|
| 911 | nMask=0 ; |
---|
| 912 | for(int k=0;k<nk;k++) |
---|
| 913 | if (data_index(k)>=0 && data_index(k)<n) |
---|
| 914 | { |
---|
| 915 | index(nMask) = data_index(k) ; |
---|
| 916 | nMask++ ; |
---|
| 917 | } |
---|
| 918 | localElement_ -> addView(CElementView::WORKFLOW, index) ; |
---|
| 919 | } |
---|
| 920 | |
---|
| 921 | void CAxis::addModelView(void) |
---|
| 922 | { |
---|
| 923 | // information for model view is stored in data_index |
---|
| 924 | localElement_->addView(CElementView::MODEL, data_index) ; |
---|
| 925 | } |
---|
| 926 | |
---|
| 927 | void CAxis::computeModelToWorkflowConnector(void) |
---|
| 928 | { |
---|
[2267] | 929 | shared_ptr<CLocalView> srcView=getLocalView(CElementView::MODEL) ; |
---|
| 930 | shared_ptr<CLocalView> dstView=getLocalView(CElementView::WORKFLOW) ; |
---|
| 931 | modelToWorkflowConnector_ = make_shared<CLocalConnector>(srcView, dstView); |
---|
[1930] | 932 | modelToWorkflowConnector_->computeConnector() ; |
---|
| 933 | } |
---|
| 934 | |
---|
| 935 | |
---|
| 936 | void CAxis::computeRemoteElement(CContextClient* client, EDistributionType type) |
---|
| 937 | { |
---|
| 938 | CContext* context = CContext::getCurrent(); |
---|
| 939 | map<int, CArray<size_t,1>> globalIndex ; |
---|
| 940 | |
---|
| 941 | if (type==EDistributionType::BANDS) // Bands distribution to send to file server |
---|
| 942 | { |
---|
[2343] | 943 | int nbServer = client->getRemoteSize(); |
---|
| 944 | int nbClient = client->getIntraCommSize() ; |
---|
| 945 | int rankClient = client->getIntraCommRank() ; |
---|
[1930] | 946 | int size = nbServer / nbClient ; |
---|
| 947 | int start ; |
---|
| 948 | if (nbServer%nbClient > rankClient) |
---|
| 949 | { |
---|
| 950 | start = (size+1) * rankClient ; |
---|
| 951 | size++ ; |
---|
| 952 | } |
---|
| 953 | else start = size*rankClient + nbServer%nbClient ; |
---|
| 954 | |
---|
| 955 | for(int i=0; i<size; i++) |
---|
| 956 | { |
---|
| 957 | int rank=start+i ; |
---|
| 958 | size_t indSize = n_glo/nbServer ; |
---|
| 959 | size_t indStart ; |
---|
| 960 | if (n_glo % nbServer > rank) |
---|
| 961 | { |
---|
| 962 | indStart = (indSize+1) * rank ; |
---|
| 963 | indSize++ ; |
---|
| 964 | } |
---|
| 965 | else indStart = indSize*rank + n_glo%nbServer ; |
---|
| 966 | |
---|
| 967 | auto& globalInd = globalIndex[rank] ; |
---|
| 968 | globalInd.resize(indSize) ; |
---|
| 969 | for(size_t n = 0 ; n<indSize; n++) globalInd(n)=indStart+n ; |
---|
| 970 | } |
---|
| 971 | } |
---|
| 972 | else if (type==EDistributionType::NONE) // domain is not distributed ie all servers get the same local domain |
---|
| 973 | { |
---|
[2343] | 974 | int nbServer = client->getRemoteSize(); |
---|
[1930] | 975 | size_t nglo=n_glo ; |
---|
| 976 | CArray<size_t,1> indGlo(nglo) ; |
---|
| 977 | for(size_t i=0;i<nglo;i++) indGlo(i) = i ; |
---|
[1939] | 978 | for (auto& rankServer : client->getRanksServerLeader()) globalIndex[rankServer].reference(indGlo.copy()); |
---|
[1930] | 979 | } |
---|
[2267] | 980 | remoteElement_[client] = make_shared<CDistributedElement>(n_glo, globalIndex) ; |
---|
[1930] | 981 | remoteElement_[client]->addFullView() ; |
---|
| 982 | } |
---|
| 983 | |
---|
[2304] | 984 | void CAxis::distributeToServer(CContextClient* client, std::map<int, CArray<size_t,1>>& globalIndexOut, std::map<int, CArray<size_t,1>>& globalIndexIn, |
---|
[2267] | 985 | shared_ptr<CScattererConnector> &scattererConnector, const string& axisId) |
---|
[1930] | 986 | { |
---|
| 987 | string serverAxisId = axisId.empty() ? this->getId() : axisId ; |
---|
| 988 | CContext* context = CContext::getCurrent(); |
---|
| 989 | |
---|
| 990 | this->sendAllAttributesToServer(client, serverAxisId) ; |
---|
| 991 | |
---|
[2304] | 992 | auto scatteredElement = make_shared<CDistributedElement>(n_glo,globalIndexOut) ; |
---|
[2267] | 993 | scatteredElement->addFullView() ; |
---|
| 994 | scattererConnector = make_shared<CScattererConnector>(localElement_->getView(CElementView::FULL), scatteredElement->getView(CElementView::FULL), |
---|
| 995 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
[1956] | 996 | scattererConnector->computeConnector() ; |
---|
[1930] | 997 | |
---|
| 998 | // phase 0 |
---|
| 999 | // send remote element to construct the full view on server, ie without hole |
---|
| 1000 | CEventClient event0(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1001 | CMessage message0 ; |
---|
| 1002 | message0<<serverAxisId<<0 ; |
---|
| 1003 | remoteElement_[client]->sendToServer(client,event0,message0) ; |
---|
| 1004 | |
---|
| 1005 | // phase 1 |
---|
| 1006 | // send the full view of element to construct the connector which connect distributed data coming from client to the full local view |
---|
| 1007 | CEventClient event1(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1008 | CMessage message1 ; |
---|
| 1009 | message1<<serverAxisId<<1<<localElement_->getView(CElementView::FULL)->getGlobalSize() ; |
---|
[1956] | 1010 | scattererConnector->transfer(localElement_->getView(CElementView::FULL)->getGlobalIndex(),client,event1,message1) ; |
---|
[1930] | 1011 | |
---|
[2267] | 1012 | sendDistributedAttributes(client, scattererConnector, axisId) ; |
---|
[1930] | 1013 | |
---|
| 1014 | // phase 2 send the mask : data index + mask2D |
---|
[2304] | 1015 | { |
---|
| 1016 | CArray<bool,1> maskIn(localElement_->getView(CElementView::WORKFLOW)->getSize()); |
---|
| 1017 | CArray<bool,1> maskOut ; |
---|
| 1018 | auto workflowToFull = make_shared<CLocalConnector>(localElement_->getView(CElementView::WORKFLOW), localElement_->getView(CElementView::FULL)) ; |
---|
| 1019 | workflowToFull->computeConnector() ; |
---|
| 1020 | maskIn=true ; |
---|
| 1021 | workflowToFull->transfer(maskIn,maskOut,false) ; |
---|
[1930] | 1022 | |
---|
[2304] | 1023 | // prepare grid scatterer connector to send data from client to server |
---|
| 1024 | map<int,CArray<size_t,1>> workflowGlobalIndex ; |
---|
| 1025 | map<int,CArray<bool,1>> maskOut2 ; |
---|
| 1026 | scattererConnector->transfer(maskOut, maskOut2) ; |
---|
| 1027 | scatteredElement->addView(CElementView::WORKFLOW, maskOut2) ; |
---|
| 1028 | scatteredElement->getView(CElementView::WORKFLOW)->getGlobalIndexView(workflowGlobalIndex) ; |
---|
| 1029 | // create new workflow view for scattered element |
---|
| 1030 | auto clientToServerElement = make_shared<CDistributedElement>(scatteredElement->getGlobalSize(), workflowGlobalIndex) ; |
---|
| 1031 | clientToServerElement->addFullView() ; |
---|
| 1032 | CEventClient event2(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1033 | CMessage message2 ; |
---|
| 1034 | message2<<serverAxisId<<2 ; |
---|
| 1035 | clientToServerElement->sendToServer(client, event2, message2) ; |
---|
| 1036 | clientToServerConnector_[client] = make_shared<CScattererConnector>(localElement_->getView(CElementView::WORKFLOW), clientToServerElement->getView(CElementView::FULL), |
---|
[2267] | 1037 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
[2304] | 1038 | clientToServerConnector_[client]->computeConnector() ; |
---|
| 1039 | } |
---|
[1930] | 1040 | |
---|
[2304] | 1041 | //////////// |
---|
| 1042 | // phase 3 : compute connector to receive from server |
---|
| 1043 | //////////// |
---|
| 1044 | { |
---|
| 1045 | auto scatteredElement = make_shared<CDistributedElement>(n_glo, globalIndexIn) ; |
---|
| 1046 | scatteredElement->addFullView() ; |
---|
| 1047 | auto scattererConnector = make_shared<CScattererConnector>(localElement_->getView(CElementView::FULL), scatteredElement->getView(CElementView::FULL), |
---|
| 1048 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
| 1049 | scattererConnector->computeConnector() ; |
---|
| 1050 | CArray<bool,1> maskIn(localElement_->getView(CElementView::WORKFLOW)->getSize()); |
---|
| 1051 | CArray<bool,1> maskOut ; |
---|
| 1052 | auto workflowToFull = make_shared<CLocalConnector>(localElement_->getView(CElementView::WORKFLOW), localElement_->getView(CElementView::FULL)) ; |
---|
| 1053 | workflowToFull->computeConnector() ; |
---|
| 1054 | maskIn=true ; |
---|
| 1055 | workflowToFull->transfer(maskIn,maskOut,false) ; |
---|
[1930] | 1056 | |
---|
[2304] | 1057 | map<int,CArray<size_t,1>> workflowGlobalIndex ; |
---|
| 1058 | map<int,CArray<bool,1>> maskOut2 ; |
---|
| 1059 | scattererConnector->transfer(maskOut, maskOut2, false) ; |
---|
| 1060 | scatteredElement->addView(CElementView::WORKFLOW, maskOut2) ; |
---|
| 1061 | scatteredElement->getView(CElementView::WORKFLOW)->getGlobalIndexView(workflowGlobalIndex) ; |
---|
| 1062 | auto clientToServerElement = make_shared<CDistributedElement>(scatteredElement->getGlobalSize(), workflowGlobalIndex) ; |
---|
| 1063 | clientToServerElement->addFullView() ; |
---|
| 1064 | CEventClient event3(getType(), EVENT_ID_AXIS_DISTRIBUTION); |
---|
| 1065 | CMessage message3 ; |
---|
| 1066 | message3<<serverAxisId<<3 ; |
---|
| 1067 | clientToServerElement->sendToServer(client, event3, message3) ; |
---|
[1930] | 1068 | |
---|
[2304] | 1069 | clientFromServerConnector_[client] = make_shared<CGathererConnector>(clientToServerElement->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)); |
---|
| 1070 | clientFromServerConnector_[client]->computeConnector() ; |
---|
| 1071 | } |
---|
| 1072 | |
---|
| 1073 | // clientFromServerConnector_[client] = make_shared<CGathererConnector>(clientToServerElement->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)); |
---|
| 1074 | // clientFromServerConnector_[client]->computeConnector() ; |
---|
| 1075 | |
---|
| 1076 | |
---|
[1930] | 1077 | } |
---|
| 1078 | |
---|
| 1079 | void CAxis::recvAxisDistribution(CEventServer& event) |
---|
| 1080 | TRY |
---|
| 1081 | { |
---|
| 1082 | string axisId; |
---|
| 1083 | int phasis ; |
---|
| 1084 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> axisId >> phasis ; |
---|
| 1085 | get(axisId)->receivedAxisDistribution(event, phasis); |
---|
| 1086 | } |
---|
| 1087 | CATCH |
---|
| 1088 | |
---|
| 1089 | |
---|
| 1090 | void CAxis::receivedAxisDistribution(CEventServer& event, int phasis) |
---|
| 1091 | TRY |
---|
| 1092 | { |
---|
| 1093 | CContext* context = CContext::getCurrent(); |
---|
| 1094 | if (phasis==0) // receive the remote element to construct the full view |
---|
| 1095 | { |
---|
[2267] | 1096 | localElement_ = make_shared<CLocalElement>(context->getIntraCommRank(),event) ; |
---|
[1930] | 1097 | localElement_->addFullView() ; |
---|
| 1098 | // construct the local dimension and indexes |
---|
| 1099 | auto& globalIndex=localElement_->getGlobalIndex() ; |
---|
| 1100 | int nk=globalIndex.numElements() ; |
---|
| 1101 | int minK=n_glo,maxK=-1 ; |
---|
| 1102 | int nGlo=n_glo ; |
---|
| 1103 | int indGlo ; |
---|
| 1104 | for(int k=0;k<nk;k++) |
---|
| 1105 | { |
---|
| 1106 | indGlo=globalIndex(k) ; |
---|
| 1107 | if (indGlo<minK) minK=indGlo ; |
---|
| 1108 | if (indGlo>maxK) maxK=indGlo ; |
---|
| 1109 | } |
---|
| 1110 | if (maxK>=minK) { begin=minK ; n=maxK-minK+1 ; } |
---|
| 1111 | else {begin=0; n=0 ;} |
---|
| 1112 | |
---|
| 1113 | } |
---|
| 1114 | else if (phasis==1) // receive the sent view from client to construct the full distributed full view on server |
---|
| 1115 | { |
---|
| 1116 | CContext* context = CContext::getCurrent(); |
---|
[2267] | 1117 | shared_ptr<CDistributedElement> elementFrom = make_shared<CDistributedElement>(event) ; |
---|
[1930] | 1118 | elementFrom->addFullView() ; |
---|
[2267] | 1119 | gathererConnector_ = make_shared<CGathererConnector>(elementFrom->getView(CElementView::FULL), localElement_->getView(CElementView::FULL)) ; |
---|
[1930] | 1120 | gathererConnector_->computeConnector() ; |
---|
| 1121 | } |
---|
| 1122 | else if (phasis==2) |
---|
| 1123 | { |
---|
[1956] | 1124 | // delete gathererConnector_ ; |
---|
[2267] | 1125 | elementFrom_ = make_shared<CDistributedElement>(event) ; |
---|
[1930] | 1126 | elementFrom_->addFullView() ; |
---|
[2267] | 1127 | // gathererConnector_ = make_shared<CGathererConnector>(elementFrom_->getView(CElementView::FULL), localElement_->getView(CElementView::FULL)) ; |
---|
[1956] | 1128 | // gathererConnector_ -> computeConnector() ; |
---|
[1930] | 1129 | } |
---|
[2304] | 1130 | else if (phasis==3) |
---|
| 1131 | { |
---|
| 1132 | elementTo_ = make_shared<CDistributedElement>(event) ; |
---|
| 1133 | elementTo_->addFullView() ; |
---|
| 1134 | } |
---|
[1930] | 1135 | } |
---|
| 1136 | CATCH |
---|
| 1137 | |
---|
[1943] | 1138 | void CAxis::setServerMask(CArray<bool,1>& serverMask, CContextClient* client) |
---|
| 1139 | TRY |
---|
| 1140 | { |
---|
| 1141 | CContext* context = CContext::getCurrent(); |
---|
| 1142 | localElement_->addView(CElementView::WORKFLOW, serverMask) ; |
---|
| 1143 | mask.reference(serverMask.copy()) ; |
---|
| 1144 | |
---|
[2267] | 1145 | serverFromClientConnector_ = make_shared<CGathererConnector>(elementFrom_->getView(CElementView::FULL), localElement_->getView(CElementView::WORKFLOW)) ; |
---|
[1943] | 1146 | serverFromClientConnector_->computeConnector() ; |
---|
| 1147 | |
---|
[2304] | 1148 | serverToClientConnector_ = make_shared<CScattererConnector>(localElement_->getView(CElementView::WORKFLOW), elementTo_->getView(CElementView::FULL), |
---|
[2267] | 1149 | context->getIntraComm(), client->getRemoteSize()) ; |
---|
[1943] | 1150 | serverToClientConnector_->computeConnector() ; |
---|
| 1151 | } |
---|
| 1152 | CATCH_DUMP_ATTR |
---|
| 1153 | |
---|
[2267] | 1154 | void CAxis::sendDistributedAttributes(CContextClient* client, shared_ptr<CScattererConnector> scattererConnector, const string& axisId) |
---|
[1930] | 1155 | { |
---|
| 1156 | string serverAxisId = axisId.empty() ? this->getId() : axisId ; |
---|
| 1157 | CContext* context = CContext::getCurrent(); |
---|
| 1158 | |
---|
| 1159 | if (hasValue) |
---|
| 1160 | { |
---|
| 1161 | { // send level value |
---|
| 1162 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
| 1163 | CMessage message ; |
---|
| 1164 | message<<serverAxisId<<string("value") ; |
---|
[2267] | 1165 | scattererConnector->transfer(value, client, event,message) ; |
---|
[1930] | 1166 | } |
---|
| 1167 | } |
---|
| 1168 | |
---|
| 1169 | if (hasBounds) |
---|
| 1170 | { |
---|
| 1171 | { // send bounds level value |
---|
| 1172 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
| 1173 | CMessage message ; |
---|
| 1174 | message<<serverAxisId<<string("bounds") ; |
---|
[2267] | 1175 | scattererConnector->transfer(2, bounds, client, event,message) ; |
---|
[1930] | 1176 | } |
---|
| 1177 | } |
---|
| 1178 | |
---|
| 1179 | if (hasLabel) |
---|
| 1180 | { |
---|
| 1181 | { // send label |
---|
[1950] | 1182 | // need to transform array of string (no fixed size for string) into array of array of char |
---|
| 1183 | // to use connector to transfer |
---|
| 1184 | // the strings must have fixed size which the maximum lenght over the string label. |
---|
| 1185 | int maxSize=0 ; |
---|
| 1186 | for(int i=0; i<label.numElements();i++) |
---|
| 1187 | if (maxSize < label(i).size()) maxSize=label(i).size() ; |
---|
| 1188 | MPI_Allreduce(MPI_IN_PLACE, &maxSize,1,MPI_INT,MPI_MAX, context->getIntraComm()) ; |
---|
| 1189 | maxSize=maxSize+1 ; |
---|
| 1190 | CArray<char,2> charArray(maxSize,label.numElements()) ; |
---|
| 1191 | for(int j=0; j<label.numElements();j++) |
---|
| 1192 | { |
---|
| 1193 | const char* str = label(j).c_str() ; |
---|
| 1194 | int strSize=label(j).size()+1 ; |
---|
| 1195 | for(int i=0; i<strSize; i++) charArray(i,j) = str[i] ; |
---|
| 1196 | } |
---|
[1930] | 1197 | CEventClient event(getType(), EVENT_ID_SEND_DISTRIBUTED_ATTRIBUTE); |
---|
| 1198 | CMessage message ; |
---|
[1950] | 1199 | message<<serverAxisId<<string("label")<<maxSize ; |
---|
[2267] | 1200 | scattererConnector->transfer(maxSize, charArray, client, event,message) ; |
---|
[1930] | 1201 | } |
---|
| 1202 | } |
---|
| 1203 | } |
---|
| 1204 | |
---|
| 1205 | void CAxis::recvDistributedAttributes(CEventServer& event) |
---|
| 1206 | TRY |
---|
| 1207 | { |
---|
| 1208 | string axisId; |
---|
| 1209 | string type ; |
---|
| 1210 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> axisId >> type ; |
---|
| 1211 | get(axisId)->recvDistributedAttributes(event, type); |
---|
| 1212 | } |
---|
| 1213 | CATCH |
---|
| 1214 | |
---|
| 1215 | void CAxis::recvDistributedAttributes(CEventServer& event, const string& type) |
---|
| 1216 | TRY |
---|
| 1217 | { |
---|
| 1218 | if (type=="value") |
---|
| 1219 | { |
---|
| 1220 | gathererConnector_->transfer(event, value, 0.); |
---|
| 1221 | } |
---|
| 1222 | else if (type=="bounds") |
---|
| 1223 | { |
---|
| 1224 | CArray<double,1> value ; |
---|
| 1225 | gathererConnector_->transfer(event, 2, value, 0.); |
---|
| 1226 | bounds.resize(2,n) ; |
---|
[1950] | 1227 | if (bounds.numElements() > 0 ) bounds=CArray<double,2>(value.dataFirst(),shape(2,n),neverDeleteData) ; |
---|
[1930] | 1228 | } |
---|
| 1229 | else if (type=="label") |
---|
| 1230 | { |
---|
[1950] | 1231 | int maxSize ; |
---|
| 1232 | for (auto& subEvent : event.subEvents) (*subEvent.buffer) >> maxSize ; |
---|
| 1233 | CArray<char,1> value ; |
---|
| 1234 | gathererConnector_->transfer(event, maxSize, value, '\0'); |
---|
| 1235 | CArray<char,2> charArray(maxSize,n) ; |
---|
| 1236 | label.resize(n) ; |
---|
| 1237 | if (n>0) |
---|
| 1238 | { |
---|
| 1239 | charArray=CArray<char,2>(value.dataFirst(),shape(maxSize,n),neverDeleteData) ; |
---|
| 1240 | for(int j=0;j<n;j++) |
---|
| 1241 | { |
---|
| 1242 | int strSize ; |
---|
| 1243 | for(int i=0;i<maxSize;i++) |
---|
| 1244 | if (charArray(i,j)=='\0') { strSize=i ; break; } |
---|
| 1245 | string str(strSize,'\0') ; |
---|
| 1246 | for(int i=0;i<strSize;i++) str[i]=charArray(i,j) ; |
---|
| 1247 | label(j)=str ; |
---|
| 1248 | } |
---|
| 1249 | } |
---|
[1930] | 1250 | } |
---|
| 1251 | } |
---|
| 1252 | CATCH |
---|
| 1253 | |
---|
[620] | 1254 | DEFINE_REF_FUNC(Axis,axis) |
---|
[619] | 1255 | |
---|
[219] | 1256 | ///--------------------------------------------------------------- |
---|
| 1257 | |
---|
[335] | 1258 | } // namespace xios |
---|