[599] | 1 | #ifndef __XIOS_ONETCDF4__ |
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| 2 | #define __XIOS_ONETCDF4__ |
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[219] | 3 | |
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[591] | 4 | /// XIOS headers /// |
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| 5 | #include "xios_spl.hpp" |
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[219] | 6 | #include "exception.hpp" |
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| 7 | #include "data_output.hpp" |
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[369] | 8 | #include "array_new.hpp" |
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[382] | 9 | #include "mpi.hpp" |
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[379] | 10 | #include "netcdf.hpp" |
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[219] | 11 | |
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| 12 | #ifndef UNLIMITED_DIM |
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| 13 | #define UNLIMITED_DIM (size_t)(-1) |
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| 14 | #endif //UNLIMITED_DIM |
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| 15 | |
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[335] | 16 | namespace xios |
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[219] | 17 | { |
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| 18 | /// ////////////////////// Déclarations ////////////////////// /// |
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| 19 | class CONetCDF4 |
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| 20 | : public virtual CDataOutput |
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| 21 | { |
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| 22 | public : |
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| 23 | |
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| 24 | /// Définition de type /// |
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| 25 | typedef std::vector<StdString> CONetCDF4Path; |
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| 26 | |
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| 27 | /// Constructeurs /// |
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[707] | 28 | CONetCDF4(const StdString& filename, bool append, bool useClassicFormat = false, |
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[878] | 29 | bool useCFConvention = true, |
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[1639] | 30 | const MPI_Comm* comm = NULL, bool multifile = true, |
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[802] | 31 | const StdString& timeCounterName = "time_counter"); |
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[219] | 32 | |
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[707] | 33 | CONetCDF4(const CONetCDF4& onetcdf4); // Not implemented. |
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| 34 | CONetCDF4(const CONetCDF4* const onetcdf4); // Not implemented. |
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[219] | 35 | |
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| 36 | |
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| 37 | /// Initialisation /// |
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[878] | 38 | void initialize(const StdString& filename, bool append, bool useClassicFormat, bool useCFConvention, |
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[1639] | 39 | const MPI_Comm* comm, bool multifile, const StdString& timeCounterName); |
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[707] | 40 | void close(void); |
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| 41 | void sync(void); |
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[219] | 42 | void definition_start(void); |
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| 43 | void definition_end(void); |
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| 44 | |
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| 45 | /// Mutateurs /// |
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[707] | 46 | void setCurrentPath(const CONetCDF4Path& path); |
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[219] | 47 | |
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[707] | 48 | int addGroup(const StdString& name); |
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[219] | 49 | int addDimension(const StdString& name, const StdSize size = UNLIMITED_DIM); |
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[707] | 50 | int addVariable(const StdString& name, nc_type type, |
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[2480] | 51 | const std::vector<StdString>& dim, bool defineChunking=true); |
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[2478] | 52 | int addChunk(CField* field, nc_type type, |
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| 53 | const std::vector<StdString>& dim, int compressionLevel=0); |
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[606] | 54 | |
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[219] | 55 | //---------------------------------------------------------------- |
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| 56 | public : |
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[606] | 57 | |
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[219] | 58 | template <class T> |
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[707] | 59 | void setDefaultValue(const StdString& varname, const T* value = NULL); |
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[606] | 60 | |
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[2530] | 61 | void setCompressionLevel(const StdString& varname, const StdString& compressionType, int compressionLevel, |
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| 62 | const CArray<double,1>& compressionParam ); |
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[606] | 63 | |
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[707] | 64 | template <class T> void addAttribute (const StdString& name, const T& value, const StdString* varname = NULL); |
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[219] | 65 | |
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| 66 | /// Ecriture des données /// |
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[369] | 67 | template <class T, int ndim> |
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[707] | 68 | void writeData(const CArray<T,ndim>& data, const StdString& name, |
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[219] | 69 | bool collective, StdSize record, |
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[707] | 70 | const std::vector<StdSize>* start = NULL, |
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| 71 | const std::vector<StdSize>* count = NULL); |
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[219] | 72 | |
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[707] | 73 | void writeData(const CArray<int, 2>& data, const StdString& name); |
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| 74 | void writeTimeAxisData(const CArray<double,1>& data, const StdString& name, |
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| 75 | bool collective, StdSize record, bool Isroot); |
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[1158] | 76 | void writeTimeAxisDataBounds(const CArray<double,1>& data, const StdString& name, |
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| 77 | bool collective, StdSize record, bool Isroot); |
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[219] | 78 | /// Accesseur /// |
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[707] | 79 | const CONetCDF4Path& getCurrentPath(void) const; |
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[219] | 80 | |
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| 81 | /// Destructeur /// |
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| 82 | virtual ~CONetCDF4(void); |
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[606] | 83 | |
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[219] | 84 | //---------------------------------------------------------------- |
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[606] | 85 | |
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[219] | 86 | protected : |
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| 87 | |
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| 88 | /// Ecriture /// |
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[347] | 89 | virtual void writeField_ (CField* field) = 0; |
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| 90 | virtual void writeDomain_(CDomain* domain) = 0; |
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| 91 | virtual void writeAxis_ (CAxis* axis) = 0; |
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[219] | 92 | |
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| 93 | /// Accesseurs /// |
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| 94 | int getCurrentGroup(void); |
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[707] | 95 | int getGroup(const CONetCDF4Path& path); |
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| 96 | int getVariable(const StdString& varname); |
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| 97 | int getDimension(const StdString& dimname); |
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| 98 | std::vector<StdSize> getDimensions (const StdString& varname); |
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| 99 | std::vector<StdString> getDimensionsIdList (const StdString* varname); |
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[266] | 100 | int getUnlimitedDimension(void); |
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| 101 | StdString getUnlimitedDimensionName(void); |
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[802] | 102 | const StdString& getTimeCounterName(void) const { return timeCounterName; }; |
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[219] | 103 | |
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[1158] | 104 | void getTimeAxisBounds(CArray<double,2>& timeAxisBounds, const StdString& name, bool collective ); |
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| 105 | void getTimeAxisBounds(CArray<double,2>& timeAxisBounds, const StdString& name, bool collective, size_t record); |
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[219] | 106 | |
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[707] | 107 | bool varExist(const StdString& varname); |
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[878] | 108 | bool dimExist(const StdString& dimname); |
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[707] | 109 | |
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[517] | 110 | bool useClassicFormat; //!< If true, NetCDF4 will use the classic NetCDF3 format |
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[878] | 111 | bool useCFConvention; //!< If true data is written in the CF convention otherwise in UGRID |
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[517] | 112 | |
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[219] | 113 | //---------------------------------------------------------------- |
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[606] | 114 | |
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[219] | 115 | private : |
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| 116 | template <class T> |
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[707] | 117 | void writeData_(int grpid, int varid, |
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| 118 | const std::vector<StdSize>& sstart, |
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| 119 | const std::vector<StdSize>& scount, T* data); |
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[219] | 120 | |
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[707] | 121 | void getWriteDataInfos(const StdString& name, StdSize record, StdSize& array_size, |
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| 122 | std::vector<StdSize>& sstart, |
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| 123 | std::vector<StdSize>& scount, |
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| 124 | const std::vector<StdSize>* start, |
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| 125 | const std::vector<StdSize>* count); |
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[219] | 126 | |
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| 127 | /// Propriétés privées /// |
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| 128 | CONetCDF4Path path; |
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| 129 | int ncidp; |
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| 130 | bool wmpi; |
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[707] | 131 | map<int,size_t> timeAxis; |
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[802] | 132 | StdString timeCounterName; |
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[219] | 133 | }; // class CONetCDF4 |
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| 134 | |
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| 135 | ///--------------------------------------------------------------- |
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| 136 | |
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| 137 | |
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[606] | 138 | |
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[335] | 139 | } // namespace xios |
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[219] | 140 | |
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[599] | 141 | #endif //__XIOS_ONETCDF4__ |
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