source: XIOS2/dev/dev_trunk_omp/make_xios @ 2399

Last change on this file since 2399 was 1762, checked in by yushan, 5 years ago

Generic_testcase : flag --omp is used to enable EP_lib. Tested on Irene with generic_testcase and test_omp (ep+intelmpi, ep+openmpi, mpi+intelmpi, mpi+openmpi)
  • Property svn:executable set to *
File size: 11.3 KB
Line 
1#!/bin/bash
2
3install_dir=$PWD
4compil_full="false"
5use_oasis="false"
6oasis="oasis3_mct"
7build_path="./"
8build_dir="./"
9build_suffixed="false"
10use_extern_boost="false"
11use_extern_blitz="false"
12use_memtrack="false"
13job="1"
14netcdf_lib="netcdf4_par"
15compil_mode="prod"
16arch_path=$PWD/"arch"
17arch_default_path=$PWD/"arch"
18arch_defined="FALSE"
19arch_path_defined="FALSE"
20use_ep="FALSE"
21#use_ep2="FALSE"
22# Traitement de la ligne de commande
23while (($# > 0))
24   do
25      case $1 in
26         "-h"|"--help"|"-help")
27            echo "make_xios - installs XIOS on your architecture"
28            echo "make_xios [options]"
29            echo "options :"
30            echo "       [--prod] : compilation in production mode (default)"
31            echo "       [--dev] : compilation in development mode"
32            echo "       [--debug] : compilation in debug mode"
33            echo "       --arch arch : to choose target architecture"
34            echo "       [--avail] : to know available target architectures "
35            echo "       [--full] : to generate dependencies and recompile from scratch"
36            echo "       [--use_oasis 'oasis3' 'oasis3_mct' : default oasis3_mct] : to use Oasis coupler"
37            echo "       [--build_path : absolute path to the build directory"
38            echo "       [--build_dir : name of the build directory"
39            echo "       [--build_suffixed : generate automatically suffixed name of the build directory (e.g. config_X64_CURIE_prod)"
40            echo "       [--use_extern_boost : to use external boost library"
41            echo "       [--use_extern_blitz : to use external blitz library"
42            echo "       [--doc] : to generate Doxygen documentation (not available yet)"
43            echo "       [--job ntasks] : to use parallel compilation with ntasks"
44            echo "       [--netcdf_lib 'netcdf4_par'/'netcdf4_seq'/'netcdf4_internal' : default netcdf4_par] : choice of netcdf library"
45            echo "       [--memtrack] : tracking memory leak - developper only"
46            echo "       [--omp] : enable multithread XIOS using mpi_endpoint (EP) : default no EP"
47            echo "Example : ./make_xios --prod --arch PW6_VARGAS"
48            echo "Example : ./make_xios --avail"
49            exit;;
50         "--prod")  compil_mode="prod"  ; shift ;;
51         "--dev")   compil_mode="dev"   ; shift ;;
52         "--debug") compil_mode="debug" ; shift ;;
53         "--arch")  arch=$2     ; arch_defined="TRUE"; shift ; shift ;;
54         "--arch_path")  arch_path=$2     ; arch_path_defined="TRUE"; shift ; shift ;;
55         "--avail") ls arch/*.fcm | cut -d"-" -f2 | cut -d"." -f1 ; exit ;;
56         "--full")  compil_full="true"  ; shift ;;
57         "--use_oasis")  use_oasis="true" oasis=$2 ; shift ; shift  ;;
58         "--build_path")  build_path=$2     ; shift ; shift ;;
59         "--build_dir")  build_dir=$2     ; shift ; shift ;;
60         "--build_suffixed")  build_suffixed="true" ; shift  ;;
61         "--use_extern_boost")  use_extern_boost="true" ; shift  ;;
62         "--use_extern_blitz")  use_extern_blitz="true" ; shift  ;;
63         "--doc")   doc="true"          ; shift ;;
64         "--job")   job=$2              ; shift ; shift ;;
65         "--netcdf_lib")   netcdf_lib=$2 ; shift ; shift ;;
66         "--memtrack")  use_memtrack="true" memtrack=$2  ; shift ; shift ;;
67         "--omp")   use_ep="true" ; shift ;;
68#         "--omp2")   use_ep2="true" ; shift ;;
69         *)         code="$1"           ; shift ;;
70      esac
71   done
72
73# Installation des sources
74nb_files_gz=`ls $install_dir/tools/archive | grep tar.gz | wc -l`
75if [ ${nb_files_gz} -ne 0 ]               
76then
77    echo -e "- uncompress archives ..."         
78    for tarname in `ls $install_dir/tools/archive/*.tar.gz` ; do
79        if  ( [[ ${tarname} == "${install_dir}/tools/archive/boost.tar.gz" ]] && [[ "$use_extern_boost" == "true" ]] ) || ( [[ ${tarname} == "${install_dir}/tools/archive/blitz.tar.gz" ]] && [[ "$use_extern_blitz" == "true" ]] )
80        then
81                continue
82        fi
83        gunzip -f "$tarname"
84        tar -xf ${tarname%.gz}
85    done
86fi
87
88# Definition of the root directory of the build
89
90if [[ "$build_path" == "./" ]]; then
91  install_dir=$PWD
92else
93  install_dir=${build_path}
94fi
95
96if [[ "$build_suffixed" == "true" ]]; then
97    install_dir="${install_dir}/config_${arch}_${compil_mode}"
98else
99    install_dir="${install_dir}/${build_dir}"
100fi
101
102mkdir -p $install_dir
103
104rm -f ${PWD}/bld_dir.cfg
105echo "inc    ${install_dir}/arch.fcm" >> ${PWD}/bld_dir.cfg
106echo "inc    ${install_dir}/config.fcm" >> ${PWD}/bld_dir.cfg
107echo "dir::root  ${install_dir}"   >> ${PWD}/bld_dir.cfg
108
109# Vérification de la présence d'un identifiant d'architecture.
110
111###############################################################
112# lecture des chemins propres a l'architecture de la machine #
113#           et configuration de l'environnement              #
114###############################################################
115
116rm -f .void_file
117echo > .void_file
118rm -rf .void_dir
119mkdir .void_dir
120
121if [[ "$arch_defined" == "TRUE" ]]
122then
123  rm -f ${install_dir}/arch.path
124  rm -f ${install_dir}/arch.fcm
125  rm -f ${install_dir}/arch.env
126
127  if test -f $arch_path/arch-${arch}.path
128  then
129    ln -s $arch_path/arch-${arch}.path ${install_dir}/arch.path
130  elif test -f $arch_default_path/arch-${arch}.path
131  then
132    ln -s $arch_default_path/arch-${arch}.path ${install_dir}/arch.path
133  fi
134       
135  if test -f $arch_path/arch-${arch}.fcm
136  then
137    ln -s $arch_path/arch-${arch}.fcm ${install_dir}/arch.fcm
138  elif test -f $arch_default_path/arch-${arch}.fcm
139  then
140    ln -s $arch_default_path/arch-${arch}.fcm ${install_dir}/arch.fcm
141  fi
142
143  if test -f $arch_path/arch-${arch}.env
144  then
145    ln -s $arch_path/arch-${arch}.env ${install_dir}/arch.env
146  elif test -f $arch_default_path/arch-${arch}.env
147  then
148    ln -s $arch_default_path/arch-${arch}.env ${install_dir}/arch.env
149  else
150    ln -s .void_file ${install_dir}/arch.env
151  fi
152  source ${install_dir}/arch.env
153  source ${install_dir}/arch.path
154else
155      echo "Please choose a target achitecture --> list all available architecture using make_xios --avail!"
156      exit 1
157fi
158
159
160
161
162# Vérification de la présence d'un mode de compilation.
163
164if [[ "$use_ep" == "true" ]]; then
165
166    if [[ "$compil_mode" == "prod" ]]
167        then
168        COMPIL_CFLAGS="%PROD_CFLAGS -D_usingEP "
169        COMPIL_FFLAGS="%PROD_FFLAGS -D_usingEP "
170    elif [[ "$compil_mode" == "dev" ]]
171        then
172        COMPIL_CFLAGS="%DEV_CFLAGS -D_usingEP "
173        COMPIL_FFLAGS="%DEV_FFLAGS -D_usingEP "
174    elif [[ "$compil_mode" == "debug" ]]
175        then
176        COMPIL_CFLAGS="%DEBUG_CFLAGS -D_usingEP "
177        COMPIL_FFLAGS="%DEBUG_FFLAGS -D_usingEP "
178    fi
179
180else
181
182    if [[ "$compil_mode" == "prod" ]]
183        then
184        COMPIL_CFLAGS="%PROD_CFLAGS"
185        COMPIL_FFLAGS="%PROD_FFLAGS"
186    elif [[ "$compil_mode" == "dev" ]]
187        then
188        COMPIL_CFLAGS="%DEV_CFLAGS"
189        COMPIL_FFLAGS="%DEV_FFLAGS"
190    elif [[ "$compil_mode" == "debug" ]]
191        then
192        COMPIL_CFLAGS="%DEBUG_CFLAGS"
193        COMPIL_FFLAGS="%DEBUG_FFLAGS"
194    fi
195
196fi
197
198
199
200#if [[ "$use_ep2" == "true" ]]; then
201
202#    if [[ "$compil_mode" == "prod" ]]
203#        then
204#        COMPIL_CFLAGS="%PROD_CFLAGS -D_usingEP -D_openmpi"
205#        COMPIL_FFLAGS="%PROD_FFLAGS -D_usingEP -D_openmpi"
206#    elif [[ "$compil_mode" == "dev" ]]
207#        then
208#        COMPIL_CFLAGS="%DEV_CFLAGS -D_usingEP -D_openmpi"
209#        COMPIL_FFLAGS="%DEV_FFLAGS -D_usingEP -D_openmpi"
210#    elif [[ "$compil_mode" == "debug" ]]
211#        then
212#        COMPIL_CFLAGS="%DEBUG_CFLAGS -D_usingEP -D_openmpi"
213#        COMPIL_FFLAGS="%DEBUG_FFLAGS -D_usingEP -D_openmpi"
214#    fi
215#
216#else
217
218#    if [[ "$compil_mode" == "prod" ]]
219#        then
220#        COMPIL_CFLAGS="%PROD_CFLAGS"
221#        COMPIL_FFLAGS="%PROD_FFLAGS"
222#    elif [[ "$compil_mode" == "dev" ]]
223#        then
224#        COMPIL_CFLAGS="%DEV_CFLAGS"
225#        COMPIL_FFLAGS="%DEV_FFLAGS"
226#    elif [[ "$compil_mode" == "debug" ]]
227#        then
228#        COMPIL_CFLAGS="%DEBUG_CFLAGS"
229#        COMPIL_FFLAGS="%DEBUG_FFLAGS"
230#    fi
231
232#fi
233
234
235
236rm -r $PWD/extern/netcdf4
237
238if [[ "$netcdf_lib" == "netcdf4_par" ]]
239   then
240     ln -s $PWD/.void_dir $PWD/extern/netcdf4
241     XIOS_CPPKEY="$XIOS_CPPKEY USING_NETCDF_PAR"
242elif [[ "$netcdf_lib" == "netcdf4_seq" ]]
243  then
244    ln -s $PWD/.void_dir $PWD/extern/netcdf4
245elif [[ "$netcdf_lib" == "netcdf4_internal" ]]
246  then
247    ln -s $PWD/extern/src_netcdf4 $PWD/extern/netcdf4
248    XIOS_CPPKEY="$XIOS_CPPKEY USING_NETCDF_PAR USING_NETCDF_INTERNAL"
249    export NETCDF_INCDIR="-I${PWD}/extern/netcdf4"
250    export NETCDF_LIBDIR=""
251    export NETCDF_LIB=""
252else
253   echo "Bad choice for --netcdf_lib argument : choose between 'netcdf4_par','netcdf4_seq' or 'netcdf4_internal'"
254   exit
255fi
256
257if [[ "$use_oasis" == "true" ]]
258   then
259    if [[ "$oasis" == "oasis3_mct" ]]
260    then
261        XIOS_CPPKEY="$XIOS_CPPKEY USE_OMCT"
262    elif [[ "$oasis" == "oasis3"  ]]
263    then
264        XIOS_CPPKEY="$XIOS_CPPKEY USE_OASIS"
265        OASIS_INCDIR="-I$PWD/../../prism/X64/build/lib/psmile.MPI1"
266        OASIS_LIBDIR="-L$PWD/../../prism/X64/lib"
267        OASIS_LIB="-lpsmile.MPI1 -lmpp_io"
268    else
269        echo "Bad choice for --use_oasis argument : choose between 'oasis3','oasis3_mct'"
270        exit
271    fi
272    NETCDF_LIB="-lnetcdff -lnetcdf"
273    XIOS_FINCDIR="$OASIS_INCDIR $XIOS_FINCDIR"
274    XIOS_LIB="$OASIS_LIBDIR $OASIS_LIB $XIOS_LIB"
275fi 
276
277# Setting path for boost
278if [[ "$use_extern_boost" == "true" ]]
279then
280   rm -r $PWD/extern/boost
281   ln -s $PWD/.void_dir $PWD/extern/boost
282else
283   export BOOST_INCDIR="-I${PWD}/extern/boost"
284   export BOOST_LIBDIR=""
285   export BOOST_LIB=""
286fi
287
288# Setting path for blitz
289if [[ "$use_extern_blitz" == "true" ]]
290then
291   rm -r $PWD/extern/blitz
292   ln -s $PWD/.void_dir $PWD/extern/blitz
293else
294   echo "src::blitz $PWD/extern/blitz/src" >> ${PWD}/bld_dir.cfg
295   export BLITZ_INCDIR="-I${PWD}/extern/blitz"
296   export BLITZ_LIBDIR=""
297   export BLITZ_LIB=""
298fi
299
300
301if [[ "$use_memtrack" == "true" ]]
302   then
303   XIOS_CPPKEY="$XIOS_CPPKEY XIOS_MEMTRACK"
304
305    if [[ "$memtrack" == "light" ]]
306    then
307        XIOS_CPPKEY="$XIOS_CPPKEY XIOS_MEMTRACK_LIGHT"
308    elif [[ "$memtrack" == "FULL"  ]]
309    then
310      XIOS_LIB="$ADDR2LINE_LIBDIR $ADDR2LINE_LIB $XIOS_LIB"
311      XIOS_CPPKEY="$XIOS_CPPKEY XIOS_MEMTRACK_FULL"
312    else
313        echo "Bad choice for --memtrack argument : choose between 'light','full'"
314        exit
315    fi
316fi
317
318XIOS_CINCDIR="$NETCDF_INCDIR $HDF5_INCDIR $MPI_INCDIR $BOOST_INCDIR $BLITZ_INCDIR"
319XIOS_FINCDIR="$NETCDF_INCDIR $XIOS_FINCDIR $MPI_INCDIR $BOOST_INCDIR $BLITZ_INCDIR"
320
321XIOS_LIB="$XIOS_LIB $NETCDF_LIBDIR $HDF5_LIBDIR $MPI_LIBDIR $NETCDF_LIB $HDF5_LIB $MPI_LIB"
322
323rm -f ${install_dir}/config.fcm
324echo "%COMPIL_CFLAGS $COMPIL_CFLAGS" >> ${install_dir}/config.fcm
325echo "%COMPIL_FFLAGS $COMPIL_FFLAGS" >> ${install_dir}/config.fcm
326echo "%CPP_KEY       $XIOS_CPPKEY"   >> ${install_dir}/config.fcm
327
328echo "%CBASE_INC     $XIOS_CINCDIR" >> ${install_dir}/config.fcm     
329echo "%FBASE_INC     $XIOS_FINCDIR" >> ${install_dir}/config.fcm
330echo "%ARCH_LD       $XIOS_LIB"     >> ${install_dir}/config.fcm
331
332echo "=> Using "$compil_mode" mode for compiling under architecture \""$arch"\" !"
333
334# Création de la documentation doxygen.
335if [[ !(-z $doc) ]]
336   then
337      echo -e "- Create Doxygen documentation (disabled)..."
338      #doxygen -s
339fi
340
341make_dir=$PWD
342
343export PATH=$PWD/tools/FCM/bin:$PATH
344
345if [[ "$compil_full" == "true" ]]
346   then
347   fcm build --clean --ignore-lock
348   fcm build -f --ignore-lock -j $job
349else
350  fcm build --ignore-lock -j $job
351fi
352
353build_exit_status=$?
354
355if [[ $build_exit_status == 0 ]]
356  then
357  set nothing
358#    cd $WORKDIR/XIOS_NEMO_COUPLE/modeles/NEMO/WORK
359#    cd $WORKDIR/XIOS_NEMO/modeles/NEMO/WORK
360#    make
361fi
362
363exit $build_exit_status
364
365
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