1 | import os |
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2 | import sys |
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3 | import subprocess |
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4 | import socket |
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5 | import os.path |
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6 | from os import path |
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7 | |
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8 | |
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9 | from default_param import * |
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10 | from user_param import * |
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11 | |
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12 | # load default_param first, variables defines in user_param will overwrite the default value |
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13 | |
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14 | |
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15 | |
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16 | def OSinfo(runthis): |
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17 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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18 | osstdout = subprocess.Popen(runthis, shell=True, stdin=subprocess.PIPE, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, close_fds=True) |
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19 | theInfo = osstdout.communicate()[0].strip() |
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20 | if osstdout.returncode!=0: |
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21 | print(red(runthis+" FAILED")) |
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22 | print >> sys.stderr, osstdout.returncode |
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23 | sys.exit() |
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24 | # else: |
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25 | # print(runthis+" OK") |
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26 | |
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27 | |
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28 | def write_jz_job(configName, nbproc=8): |
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29 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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30 | f=open("jz_job_"+configName+".sh", "w") |
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31 | f.write("#!/bin/bash\n") |
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32 | f.write("#SBATCH --ntasks="+repr(nbproc)+" # Nombre total de processus MPI\n") |
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33 | f.write("#SBATCH --ntasks-per-node=16\n") |
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34 | f.write("#SBATCH --hint=nomultithread\n") |
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35 | f.write("#SBATCH -t 00:10:00 # Temps elapsed maximum d'execution\n") |
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36 | f.write("#SBATCH -o single_config.out # Nom du fichier de sortie\n") |
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37 | f.write("#SBATCH -e single_config.err # Nom du fichier d'erreur\n") |
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38 | f.write("#SBATCH --account=psl@cpu\n") |
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39 | f.write("cd ${SLURM_SUBMIT_DIR}\n") |
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40 | f.write("module purge\n") |
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41 | f.write("module load intel-all/19.0.4\n") |
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42 | f.write("module load netcdf/4.7.0/intel-19.0.4-mpi\n") |
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43 | f.write("module load netcdf-cxx/4.2/intel-19.0.4-mpi\n") |
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44 | f.write("module load netcdf-fortran/4.4.5/intel-19.0.4-mpi\n") |
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45 | f.write("module load gcc/6.5.0/gcc-4.8.5\n") |
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46 | f.write("module load cmake\n") |
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47 | f.write("module load cdo\n") |
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48 | f.write("ulimit -c 0\n") |
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49 | xios_root=os.getenv('xios_dir') |
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50 | build_folder=os.getenv('build_dir') |
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51 | f.write("export xios_dir="+xios_root+"\n") |
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52 | f.write("export build_dir="+build_folder+"\n") |
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53 | f.write("export machine_name=jeanzay\n") |
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54 | f.write("cp ../setup.py ./\n") |
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55 | f.write("cp ../run_sub_test.sh ./\n") |
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56 | f.write("mv user_params.def user_params.def_bkp\n") |
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57 | f.write("cp "+configName+"/setup/user_param.py user_params.def\n") |
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58 | f.write("python setup.py\n") |
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59 | f.write("cmake .\n") |
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60 | f.write("ctest -V #enable all output\n") |
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61 | f.write("rm -f setup.py\n") |
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62 | f.write("rm -f run_sub_test.sh\n") |
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63 | f.write("rm -f run_test_*.py\n") |
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64 | f.write("rm -f CMakeLists.txt\n") |
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65 | f.write("rm -f context_grid_dynamico.xml\n") |
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66 | f.write("rm -f dynamico_grid.nc\n") |
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67 | f.write("rm -f default_param.*\n") |
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68 | f.write("rm -f user_param.*\n") |
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69 | f.write("mv user_params.def_bkp user_params.def\n") |
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70 | f.write("\n") |
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71 | f.close |
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72 | |
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73 | def write_irene_job(configName, nbproc=8): |
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74 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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75 | f=open("irene_job_"+configName+".sh", "w") |
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76 | f.write("#!/bin/bash\n") |
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77 | f.write("#MSUB -r XIOS\n") |
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78 | f.write("#MSUB -o client_output.out # standard output\n") |
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79 | f.write("#MSUB -e client_error.err #error output\n") |
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80 | f.write("#MSUB -eo\n") |
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81 | f.write("#MSUB -c 1\n") |
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82 | f.write("#MSUB -n "+ repr(nbproc) + " # Number of MPI tasks (SPMD case) or cores (MPMD case)\n") |
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83 | f.write("#MSUB -X \n") |
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84 | f.write("#MSUB -x \n") |
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85 | f.write("#MSUB -T 600 # Wall clock limit (seconds)\n") |
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86 | f.write("#MSUB -q skylake # thin nodes\n") |
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87 | f.write("#MSUB -A devcmip6\n") |
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88 | f.write("#MSUB -Q test\n") |
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89 | f.write("#MSUB -m work\n") |
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90 | f.write("cd $BRIDGE_MSUB_PWD\n") |
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91 | f.write("module unload netcdf-c netcdf-fortran hdf5 flavor perl hdf5 boost blitz mpi gnu\n") |
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92 | f.write("module load gnu\n") |
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93 | f.write("module load mpi/intelmpi/2017.0.6.256\n") |
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94 | f.write("module load flavor/buildcompiler/intel/17\n") |
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95 | f.write("module load flavor/hdf5/parallel\n") |
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96 | f.write("module load netcdf-fortran/4.4.4\n") |
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97 | f.write("module load hdf5/1.8.20\n") |
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98 | f.write("module load boost\n") |
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99 | f.write("module load blitz\n") |
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100 | f.write("module load feature/bridge/heterogenous_mpmd\n") |
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101 | f.write("module load nco\n") |
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102 | f.write("module load cdo\n") |
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103 | f.write("export KMP_STACKSIZE=3g\n") |
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104 | f.write("export KMP_LIBRARY=turnaround\n") |
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105 | f.write("export MKL_SERIAL=YES\n") |
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106 | f.write("export OMP_NUM_THREADS=${BRIDGE_MSUB_NCORE}\n") |
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107 | f.write("set -x \n") |
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108 | xios_root=os.getenv('xios_dir') |
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109 | build_folder=os.getenv('build_dir') |
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110 | f.write("export xios_dir="+xios_root+"\n") |
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111 | f.write("export build_dir="+build_folder+"\n") |
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112 | f.write("export machine_name=irene\n") |
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113 | f.write("cp ../setup.py ./\n") |
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114 | f.write("cp ../run_sub_test.sh ./\n") |
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115 | f.write("mv user_params.def user_params.def_bkp\n") |
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116 | f.write("cp "+configName+"/setup/user_param.py user_params.def\n") |
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117 | f.write("python setup.py\n") |
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118 | f.write("cmake .\n") |
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119 | f.write("ctest -V #enable all output\n") |
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120 | f.write("rm -f setup.py\n") |
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121 | f.write("rm -f run_sub_test.sh\n") |
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122 | f.write("rm -f run_test_*.py\n") |
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123 | f.write("rm -f CMakeLists.txt\n") |
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124 | f.write("rm -f context_grid_dynamico.xml\n") |
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125 | f.write("rm -f dynamico_grid.nc\n") |
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126 | f.write("rm -f default_param.*\n") |
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127 | f.write("rm -f user_param.*\n") |
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128 | f.write("mv user_params.def_bkp user_params.def\n") |
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129 | f.write("\n") |
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130 | f.close |
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131 | |
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132 | |
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133 | |
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134 | def main(): |
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135 | |
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136 | black = lambda text: '\033[0;30m' + text + '\033[0m' |
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137 | red = lambda text: '\033[0;31m' + text + '\033[0m' |
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138 | green = lambda text: '\033[0;32m' + text + '\033[0m' |
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139 | yellow = lambda text: '\033[0;33m' + text + '\033[0m' |
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140 | blue = lambda text: '\033[0;34m' + text + '\033[0m' |
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141 | magenta = lambda text: '\033[0;35m' + text + '\033[0m' |
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142 | cyan = lambda text: '\033[0;36m' + text + '\033[0m' |
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143 | lgray = lambda text: '\033[0;37m' + text + '\033[0m' |
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144 | dgray = lambda text: '\033[1;30m' + text + '\033[0m' |
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145 | lred = lambda text: '\033[1;32m' + text + '\033[0m' |
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146 | lgreen = lambda text: '\033[1;32m' + text + '\033[0m' |
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147 | lyellow = lambda text: '\033[1;33m' + text + '\033[0m' |
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148 | lblue = lambda text: '\033[1;34m' + text + '\033[0m' |
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149 | lpurple = lambda text: '\033[1;35m' + text + '\033[0m' |
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150 | lcyan = lambda text: '\033[1;36m' + text + '\033[0m' |
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151 | white = lambda text: '\033[1;37m' + text + '\033[0m' |
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152 | |
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153 | configNamePattern=[0]*7 |
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154 | |
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155 | f=open("user_param.py", "r") |
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156 | for line in f: |
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157 | line = line.strip() |
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158 | if line.startswith("UsingServer2"): |
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159 | configNamePattern[0] = '_UsingSrv2=' + UsingServer2 |
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160 | elif line.startswith("RatioServer2"): |
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161 | configNamePattern[1] = '_RatioSrv2=' + repr(RatioServer2) |
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162 | elif line.startswith("NumberPoolsServer2"): |
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163 | configNamePattern[2] = '_NbPoolsSrv2=' + repr(NumberPoolsServer2) |
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164 | elif line.startswith("NumberClients"): |
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165 | configNamePattern[3] = '_NbClients=' + repr(NumberClients) |
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166 | elif line.startswith("NumberServers"): |
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167 | configNamePattern[4] = '_NbServers=' + repr(NumberServers) |
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168 | elif line.startswith("Duration"): |
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169 | configNamePattern[5] = '_Duration=' + Duration |
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170 | elif line.startswith("ATMdomain"): |
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171 | configNamePattern[5] = '_ATMdomain=' + ATMdomain |
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172 | f.close() |
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173 | |
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174 | |
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175 | |
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176 | configName = "config" |
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177 | defaultConfig = True |
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178 | |
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179 | for i in range(len(configNamePattern)): |
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180 | if configNamePattern[i] != 0: |
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181 | configName = configName + configNamePattern[i] |
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182 | defaultConfig = False |
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183 | |
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184 | if defaultConfig: |
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185 | configName = "config_default" |
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186 | |
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187 | |
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188 | |
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189 | |
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190 | if not os.path.exists(configName): |
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191 | |
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192 | |
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193 | |
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194 | |
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195 | os.mkdir(configName) |
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196 | print blue("\n ****************************************************************") |
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197 | print blue(" * Directory " + repr(configName) + " Created ") |
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198 | print blue(" * Copy results to \'not_validated_reference\' folder") |
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199 | print blue(" ****************************************************************\n") |
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200 | |
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201 | OSinfo("mkdir "+configName+'/setup') |
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202 | OSinfo('mkdir '+configName+'/tmp_reference') |
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203 | OSinfo('mkdir '+configName+'/xios_output') |
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204 | |
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205 | OSinfo('mv param.def '+configName+'/setup/') |
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206 | OSinfo('mv all_param.def '+configName+'/setup/') |
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207 | OSinfo('mv user_param.py '+configName+'/setup/') |
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208 | OSinfo('cp '+configName+'/setup/user_param.py '+configName+'/setup/user_param.def ') |
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209 | OSinfo('mv iodef.xml '+configName+'/setup/') |
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210 | OSinfo('cp context_atm.xml '+configName+'/setup/') |
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211 | OSinfo('cp context_grid_dynamico.xml '+configName+'/setup/') |
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212 | OSinfo('cp dynamico_grid.nc '+configName+'/setup/') |
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213 | OSinfo('mv xios_*.out '+configName+'/xios_output/') |
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214 | OSinfo('mv xios_*.err '+configName+'/xios_output/') |
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215 | |
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216 | |
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217 | f=open("checkfile.def", "r") |
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218 | h=open("report.txt", "a+") |
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219 | l=open("report.html", "a+") |
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220 | preport=open("../plein_report.txt", "a+") |
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221 | h.write("Config : "+configName+"\n") |
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222 | l.write("<p>Config : "+configName+"</p>") |
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223 | for line in f: |
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224 | line=line.strip() |
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225 | line=line.rstrip() |
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226 | |
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227 | if line.startswith("all"): |
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228 | allfiles = os.listdir(os.getcwd()) |
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229 | for thisfile in allfiles: |
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230 | if thisfile.endswith(".nc") and thisfile!="dynamico_grid.nc": |
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231 | cmd = 'mv '+thisfile + ' '+configName+'/tmp_reference/' |
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232 | OSinfo(cmd) |
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233 | |
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234 | h.write("test for "+lpurple("all NC files")+" \t"+yellow('INITIALIZED')+"\n") |
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235 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"_all_nc_files"+" "+repr(0)+" \n") |
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236 | l.write("<p>test for <font color=\"purple\">"+"all NC files"+"</font> <font color=\"darkorange\">INITIALIZED</font></p>") |
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237 | print yellow("\n ****************************************") |
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238 | print yellow(" ** "+"all NC files"+" is stored as temporal reference !!! **") |
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239 | print yellow("\n ****************************************") |
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240 | |
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241 | break |
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242 | |
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243 | if not line.startswith("#") and len(line) != 0: |
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244 | cmd = 'mv '+line + ' '+configName+'/tmp_reference/' |
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245 | OSinfo(cmd) |
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246 | |
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247 | h.write("test for "+lpurple(line)+" \t"+yellow('INITIALIZED')+"\n") |
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248 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"@"+line+" "+repr(0)+" \n") |
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249 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"darkorange\">INITIALIZED</font></p>") |
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250 | print yellow("\n ****************************************") |
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251 | print yellow(" ** "+line+" is stored as temporal reference !!! **") |
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252 | print yellow("\n ****************************************") |
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253 | |
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254 | f.close() |
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255 | h.write("\n") |
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256 | l.write("<br>") |
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257 | h.close() |
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258 | l.close() |
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259 | preport.close() |
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260 | #generate job scripts |
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261 | hostname=os.getenv('machine_name') |
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262 | if hostname.startswith("jeanzay"): |
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263 | write_jz_job(configName, NumberClients+NumberServers) |
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264 | |
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265 | elif hostname.startswith("irene"): |
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266 | write_irene_job(configName, NumberClients+NumberServers) |
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267 | |
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268 | else : |
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269 | print("machine unknown") |
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270 | print >> sys.stderr, 1 |
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271 | sys.exit() |
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272 | |
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273 | |
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274 | else: |
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275 | |
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276 | |
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277 | |
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278 | print blue("\n ********************************************************") |
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279 | print blue(" * Directory " + repr(configName) + " already exists") |
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280 | print blue(" * Start comparing results with references") |
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281 | print blue(" ********************************************************\n") |
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282 | |
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283 | tmp_ref = os.path.isdir(configName+'/tmp_reference') |
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284 | ref = os.path.isdir(configName+'/reference') and not tmp_ref |
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285 | |
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286 | |
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287 | if ref: |
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288 | print blue("\n =====================================") |
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289 | print blue(" | Comparing results with references |") |
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290 | print blue(" =====================================\n") |
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291 | path = configName+'/reference/' |
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292 | OSinfo('cp '+configName+'/setup/user_param.py '+configName+'/setup/user_param.def ') |
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293 | elif tmp_ref: |
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294 | print blue("\n ===================================================") |
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295 | print blue(" | Comparing results with NON-Validated references |") |
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296 | print blue(" ===================================================\n") |
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297 | path = configName+'/tmp_reference/' |
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298 | OSinfo('cp '+configName+'/setup/user_param.py '+configName+'/setup/user_param.def ') |
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299 | |
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300 | f=open("checkfile.def", "r") |
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301 | h=open("report.txt", "a+") |
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302 | l=open("report.html", "a+") |
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303 | preport=open("../plein_report.txt", "a+") |
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304 | |
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305 | |
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306 | h.write("Config : "+configName+"\n") |
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307 | l.write("<p>Config : "+configName+"</p>") |
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308 | for line in f: |
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309 | |
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310 | line=line.strip() |
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311 | line=line.rstrip() |
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312 | |
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313 | if line.startswith("all") : |
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314 | for thisfile in os.listdir(path): |
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315 | if thisfile.endswith(".nc"): |
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316 | cmd = 'cdo -W diffn '+ thisfile +' '+ path + thisfile + ' | tail -1 > diff.txt' |
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317 | |
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318 | OSinfo(cmd) |
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319 | |
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320 | if os.stat("diff.txt").st_size==0: |
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321 | h.write("test for "+lpurple(thisfile)+" \t"+green('PASSED')+"\n") |
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322 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"@"+thisfile+" "+repr(1)+" \n") |
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323 | l.write("<p>test for <font color=\"purple\">"+thisfile+"</font> <font color=\"green\">PASSED</font></p>") |
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324 | print green("\n ****************************************") |
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325 | print green(" ** "+thisfile+" is valid !!! **") |
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326 | print green("\n ****************************************") |
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327 | |
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328 | else: |
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329 | g=open("diff.txt", "r") |
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330 | for gline in g: |
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331 | if gline.strip().startswith("0") or ":" in gline : |
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332 | h.write("test for "+lpurple(thisfile)+" \t"+green('PASSED')+"\n") |
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333 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"@"+thisfile+" "+repr(1)+" \n") |
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334 | l.write("<p>test for <font color=\"purple\">"+thisfile+"</font> <font color=\"green\">PASSED</font></p>") |
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335 | print green("\n ****************************************") |
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336 | print green(" ** "+thisfile+" is valid !!! **") |
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337 | print green("\n ****************************************") |
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338 | else: |
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339 | h.write("test for "+lpurple(thisfile)+" \t"+red('FAILED')+"\n") |
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340 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"@"+thisfile+" "+repr(-1)+" \n") |
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341 | l.write("<p>test for <font color=\"purple\">"+thisfile+"</font> <font color=\"red\">FAILED</font></p>") |
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342 | print red("\n **************************************************") |
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343 | print red(" ** "+thisfile+" is NOT valid. Please debugging.. **") |
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344 | print red("\n **************************************************") |
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345 | g.close() |
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346 | |
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347 | # generate job submission script |
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348 | hostname=os.getenv('machine_name') |
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349 | |
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350 | if hostname.startswith("jeanzay"): |
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351 | write_jz_job(configName, NumberClients+NumberServers) |
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352 | |
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353 | elif hostname.startswith("irene"): |
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354 | write_irene_job(configName, NumberClients+NumberServers) |
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355 | |
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356 | else : |
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357 | print("machine unknown") |
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358 | print >> sys.stderr, 1 |
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359 | sys.exit() |
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360 | break |
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361 | |
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362 | |
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363 | elif not line.startswith("#") and len(line) != 0: |
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364 | cmd = 'cdo -W diffn '+ line +' '+ path + line + ' | tail -1 > diff.txt' |
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365 | |
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366 | OSinfo(cmd) |
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367 | |
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368 | if os.stat("diff.txt").st_size==0: |
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369 | h.write("test for "+lpurple(line)+" \t"+green('PASSED')+"\n") |
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370 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"@"+line+" "+repr(1)+" \n") |
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371 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"green\">PASSED</font></p>") |
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372 | print green("\n ****************************************") |
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373 | print green(" ** "+line+" is valid !!! **") |
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374 | print green("\n ****************************************") |
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375 | |
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376 | else: |
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377 | g=open("diff.txt", "r") |
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378 | for gline in g: |
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379 | if gline.strip().startswith("0") or ":" in gline : |
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380 | h.write("test for "+lpurple(line)+" \t"+green('PASSED')+"\n") |
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381 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"@"+line+" "+repr(1)+" \n") |
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382 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"green\">PASSED</font></p>") |
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383 | print green("\n ****************************************") |
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384 | print green(" ** "+line+" is valid !!! **") |
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385 | print green("\n ****************************************") |
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386 | else: |
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387 | h.write("test for "+lpurple(line)+" \t"+red('FAILED')+"\n") |
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388 | preport.write(os.path.basename(os.getcwd())+" "+os.path.basename(os.getcwd())[5:]+"@"+configName+" "+os.path.basename(os.getcwd())[5:]+"@"+configName[7:]+"@"+line+" "+repr(-1)+" \n") |
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389 | l.write("<p>test for <font color=\"purple\">"+line+"</font> <font color=\"red\">FAILED</font></p>") |
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390 | print red("\n **************************************************") |
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391 | print red(" ** "+line+" is NOT valid. Please debugging.. **") |
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392 | print red("\n **************************************************") |
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393 | g.close() |
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394 | |
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395 | # generate job submission script |
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396 | hostname=os.getenv('machine_name') |
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397 | |
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398 | if hostname.startswith("jeanzay"): |
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399 | write_jz_job(configName, NumberClients+NumberServers) |
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400 | |
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401 | elif hostname.startswith("irene"): |
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402 | write_irene_job(configName, NumberClients+NumberServers) |
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403 | |
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404 | else : |
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405 | print("machine unknown") |
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406 | print >> sys.stderr, 1 |
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407 | sys.exit() |
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408 | |
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409 | |
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410 | f.close() |
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411 | h.write("\n") |
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412 | l.write("<br>") |
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413 | h.close() |
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414 | l.close() |
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415 | preport.close() |
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416 | |
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417 | if not os.path.exists('current_run'): |
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418 | OSinfo('mkdir current_run') |
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419 | |
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420 | if not os.path.exists('current_run/'+configName): |
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421 | OSinfo('mkdir current_run/'+configName) |
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422 | |
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423 | OSinfo('mv -f param.def current_run/'+configName) |
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424 | OSinfo('mv -f all_param.def current_run/'+configName) |
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425 | OSinfo('mv -f user_param.py current_run/'+configName) |
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426 | OSinfo('mv -f iodef.xml current_run/'+configName) |
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427 | OSinfo('rm -f current_run/'+configName+'/context_atm.xml') |
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428 | OSinfo('cp -n context_atm.xml current_run/'+configName) |
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429 | OSinfo('cp -f context_grid_dynamico.xml current_run/'+configName) |
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430 | OSinfo('cp -f dynamico_grid.nc current_run/'+configName) |
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431 | OSinfo('mv -f xios_*.out current_run/'+configName) |
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432 | OSinfo('mv -f xios_*.err current_run/'+configName) |
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433 | |
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434 | |
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435 | |
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436 | |
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437 | if __name__== "__main__": |
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438 | main() |
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