[219] | 1 | #ifndef __XMLIO_INETCDF4__ |
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| 2 | #define __XMLIO_INETCDF4__ |
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| 3 | |
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[335] | 4 | /// xios headers /// |
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[219] | 5 | #include "xmlioserver_spl.hpp" |
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| 6 | #include "exception.hpp" |
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| 7 | #include "data_output.hpp" |
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[369] | 8 | #include "array_new.hpp" |
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[382] | 9 | #include "mpi.hpp" |
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[379] | 10 | #include "netcdf.hpp" |
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[219] | 11 | |
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| 12 | #ifndef UNLIMITED_DIM |
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| 13 | #define UNLIMITED_DIM (size_t)(-1) |
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| 14 | #endif //UNLIMITED_DIM |
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| 15 | |
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[335] | 16 | namespace xios |
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[219] | 17 | { |
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| 18 | /// ////////////////////// Déclarations ////////////////////// /// |
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| 19 | class CONetCDF4 |
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| 20 | : public virtual CDataOutput |
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| 21 | { |
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| 22 | public : |
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| 23 | |
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| 24 | /// Définition de type /// |
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| 25 | typedef std::vector<StdString> CONetCDF4Path; |
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| 26 | |
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| 27 | /// Constructeurs /// |
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[286] | 28 | CONetCDF4(const StdString & filename, bool exist, const MPI_Comm * comm = NULL, bool multifile=true); |
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[219] | 29 | |
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| 30 | CONetCDF4(const CONetCDF4 & onetcdf4); // Not implemented. |
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| 31 | CONetCDF4(const CONetCDF4 * const onetcdf4); // Not implemented. |
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| 32 | |
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| 33 | |
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| 34 | /// Initialisation /// |
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[286] | 35 | void initialize(const StdString & filename, bool exist, const MPI_Comm * comm, bool multifile); |
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| 36 | void close(void) ; |
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| 37 | void sync(void) ; |
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[219] | 38 | void definition_start(void); |
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| 39 | void definition_end(void); |
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| 40 | |
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| 41 | /// Mutateurs /// |
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| 42 | void setCurrentPath(const CONetCDF4Path & path); |
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| 43 | |
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| 44 | int addGroup(const StdString & name); |
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| 45 | int addDimension(const StdString& name, const StdSize size = UNLIMITED_DIM); |
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| 46 | int addVariable(const StdString & name, nc_type type, |
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| 47 | const std::vector<StdString> & dim); |
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| 48 | |
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| 49 | //---------------------------------------------------------------- |
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| 50 | public : |
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| 51 | |
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| 52 | template <class T> |
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| 53 | void setDefaultValue(const StdString & varname, const T * value = NULL); |
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| 54 | |
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[472] | 55 | template <class T> void addAttribute (const StdString & name, const T & value, const StdString * varname = NULL); |
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[219] | 56 | |
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| 57 | /// Ecriture des données /// |
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[369] | 58 | template <class T, int ndim> |
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| 59 | void writeData(const CArray<T,ndim>& data, const StdString & name, |
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[219] | 60 | bool collective, StdSize record, |
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| 61 | const std::vector<StdSize> * start = NULL, |
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| 62 | const std::vector<StdSize> * count = NULL); |
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| 63 | |
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[413] | 64 | void writeData(const CArray<int, 2>& data, const StdString & name); |
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| 65 | void writeTimeAxisData(const CArray<double,1>& data, const StdString & name, |
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| 66 | bool collective, StdSize record, bool Isroot) ; |
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[219] | 67 | /// Accesseur /// |
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| 68 | const CONetCDF4Path & getCurrentPath(void) const; |
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| 69 | |
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| 70 | /// Destructeur /// |
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| 71 | virtual ~CONetCDF4(void); |
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| 72 | |
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| 73 | //---------------------------------------------------------------- |
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| 74 | |
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| 75 | protected : |
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| 76 | |
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| 77 | /// Ecriture /// |
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[347] | 78 | virtual void writeField_ (CField* field) = 0; |
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| 79 | virtual void writeDomain_(CDomain* domain) = 0; |
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| 80 | virtual void writeAxis_ (CAxis* axis) = 0; |
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[219] | 81 | |
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| 82 | /// Accesseurs /// |
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| 83 | int getCurrentGroup(void); |
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| 84 | int getGroup(const CONetCDF4Path & path); |
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| 85 | int getVariable(const StdString & varname); |
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| 86 | int getDimension(const StdString & dimname); |
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[266] | 87 | std::vector<StdSize> getDimensions (const StdString & varname); |
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| 88 | std::vector<StdString> getDimensionsIdList (const StdString * varname); |
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| 89 | int getUnlimitedDimension(void); |
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| 90 | StdString getUnlimitedDimensionName(void); |
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[219] | 91 | |
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| 92 | bool varExist(const StdString & varname); |
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| 93 | |
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| 94 | //---------------------------------------------------------------- |
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| 95 | |
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| 96 | private : |
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| 97 | |
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| 98 | template <class T> |
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| 99 | void writeData_(int grpid, int varid, |
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| 100 | const std::vector<StdSize> & sstart, |
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| 101 | const std::vector<StdSize> & scount, T * data); |
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| 102 | |
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| 103 | void getWriteDataInfos(const StdString & name, StdSize record, StdSize & array_size, |
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| 104 | std::vector<StdSize> & sstart, |
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| 105 | std::vector<StdSize> & scount, |
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| 106 | const std::vector<StdSize> * start, |
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| 107 | const std::vector<StdSize> * count); |
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| 108 | |
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| 109 | /// Vérification des erreurs NetCDF /// |
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| 110 | void CheckError(int status); |
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| 111 | |
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| 112 | /// Propriétés privées /// |
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| 113 | CONetCDF4Path path; |
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| 114 | int ncidp; |
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| 115 | bool wmpi; |
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[413] | 116 | map<int,size_t> timeAxis ; |
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[219] | 117 | }; // class CONetCDF4 |
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| 118 | |
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| 119 | ///--------------------------------------------------------------- |
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| 120 | |
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| 121 | |
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| 122 | |
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[335] | 123 | } // namespace xios |
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[219] | 124 | |
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| 125 | #endif //__XMLIO_INETCDF4__ |
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