1 | |
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2 | #include "nc4_data_output.hpp" |
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3 | |
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4 | #include <boost/lexical_cast.hpp> |
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5 | #include "attribute_template.hpp" |
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6 | #include "group_template.hpp" |
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7 | |
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8 | #include "file.hpp" |
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9 | #include "calendar.hpp" |
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10 | #include "context.hpp" |
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11 | #include "context_server.hpp" |
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12 | |
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13 | namespace xios |
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14 | { |
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15 | /// ////////////////////// Définitions ////////////////////// /// |
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16 | CNc4DataOutput::CNc4DataOutput |
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17 | (const StdString & filename, bool exist) |
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18 | : SuperClass() |
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19 | , SuperClassWriter(filename, exist) |
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20 | , filename(filename) |
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21 | { |
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22 | StdString timeid = StdString("time_counter"); |
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23 | SuperClass::type = MULTI_FILE; |
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24 | // if (!exist) |
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25 | // SuperClassWriter::addDimension(timeid); |
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26 | } |
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27 | |
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28 | CNc4DataOutput::CNc4DataOutput |
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29 | (const StdString & filename, bool exist, MPI_Comm comm_file,bool multifile, bool isCollective) |
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30 | : SuperClass() |
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31 | , SuperClassWriter(filename, exist, &comm_file,multifile) |
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32 | , comm_file(comm_file) |
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33 | , filename(filename) |
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34 | , isCollective(isCollective) |
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35 | { |
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36 | StdString timeid = StdString("time_counter"); |
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37 | |
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38 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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39 | |
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40 | // if (!exist) |
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41 | // SuperClassWriter::addDimension(timeid); |
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42 | } |
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43 | |
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44 | |
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45 | CNc4DataOutput::~CNc4DataOutput(void) |
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46 | { /* Ne rien faire de plus */ } |
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47 | |
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48 | ///-------------------------------------------------------------- |
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49 | |
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50 | const StdString & CNc4DataOutput::getFileName(void) const |
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51 | { |
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52 | return (this->filename); |
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53 | } |
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54 | |
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55 | //--------------------------------------------------------------- |
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56 | |
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57 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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58 | { |
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59 | if (domain->type == CDomain::type_attr::unstructured) |
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60 | { |
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61 | writeUnstructuredDomain(domain) ; |
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62 | return ; |
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63 | } |
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64 | |
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65 | CContext* context = CContext::getCurrent() ; |
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66 | CContextServer* server=context->server ; |
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67 | |
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68 | if (domain->IsWritten(this->filename)) return; |
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69 | domain->checkAttributes(); |
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70 | |
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71 | if (domain->isEmpty()) |
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72 | if (SuperClass::type==MULTI_FILE) return ; |
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73 | |
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74 | std::vector<StdString> dim0, dim1; |
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75 | StdString domid = (!domain->name.isEmpty()) |
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76 | ? domain->name.getValue() : domain->getId(); |
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77 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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78 | |
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79 | |
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80 | StdString dimXid, dimYid ; |
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81 | |
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82 | switch (domain->type) |
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83 | { |
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84 | case CDomain::type_attr::curvilinear : |
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85 | dimXid = StdString("x").append(appendDomid); |
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86 | dimYid = StdString("y").append(appendDomid); |
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87 | break ; |
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88 | case CDomain::type_attr::regular : |
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89 | dimXid = StdString("lon").append(appendDomid); |
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90 | dimYid = StdString("lat").append(appendDomid); |
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91 | break; |
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92 | case CDomain::type_attr::unstructured : |
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93 | dimXid = StdString("cell").append(appendDomid); |
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94 | break; |
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95 | } |
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96 | |
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97 | string lonid,latid,bounds_lonid,bounds_latid ; |
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98 | /* |
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99 | StdString lonid_loc = (server->intraCommSize > 1) |
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100 | ? StdString("lon").append(appendDomid).append("_local") |
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101 | : lonid; |
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102 | StdString latid_loc = (server->intraCommSize > 1) |
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103 | ? StdString("lat").append(appendDomid).append("_local") |
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104 | : latid; |
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105 | */ |
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106 | |
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107 | switch (SuperClass::type) |
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108 | { |
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109 | case (MULTI_FILE) : |
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110 | { |
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111 | // if (domain->isEmpty()) return; |
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112 | |
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113 | if (server->intraCommSize > 1) |
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114 | { |
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115 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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116 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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117 | } |
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118 | |
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119 | switch (domain->type) |
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120 | { |
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121 | case CDomain::type_attr::curvilinear : |
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122 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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123 | lonid = StdString("nav_lon").append(appendDomid); |
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124 | latid = StdString("nav_lat").append(appendDomid); |
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125 | break ; |
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126 | case CDomain::type_attr::regular : |
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127 | lonid = StdString("lon").append(appendDomid); |
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128 | latid = StdString("lat").append(appendDomid); |
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129 | dim0.push_back(dimYid); |
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130 | dim1.push_back(dimXid); |
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131 | break; |
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132 | case CDomain::type_attr::unstructured : |
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133 | lonid = StdString("lon").append(appendDomid); |
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134 | latid = StdString("lat").append(appendDomid); |
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135 | bounds_lonid=string("bounds_lon").append(appendDomid); |
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136 | bounds_latid=string("bounds_lat").append(appendDomid); |
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137 | dim0.push_back(dimXid); |
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138 | break; |
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139 | } |
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140 | |
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141 | if (domain->type == CDomain::type_attr::unstructured) |
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142 | { |
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143 | SuperClassWriter::addDimension(dimXid, domain->nj_glo); |
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144 | } |
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145 | else |
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146 | { |
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147 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
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148 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv); |
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149 | } |
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150 | |
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151 | if (server->intraCommSize > 1) |
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152 | { |
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153 | if (domain->type != CDomain::type_attr::unstructured) |
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154 | { |
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155 | this->writeLocalAttributes(domain->zoom_ibegin_srv, |
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156 | domain->zoom_ni_srv, |
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157 | domain->zoom_jbegin_srv, |
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158 | domain->zoom_nj_srv, |
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159 | appendDomid); |
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160 | |
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161 | if (singleDomain) this->writeLocalAttributes_IOIPSL(domain->zoom_ibegin_srv, |
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162 | domain->zoom_ni_srv, |
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163 | domain->zoom_jbegin_srv, |
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164 | domain->zoom_nj_srv, |
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165 | domain->ni_glo,domain->nj_glo, |
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166 | server->intraCommRank,server->intraCommSize); |
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167 | } |
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168 | } |
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169 | |
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170 | switch (domain->type) |
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171 | { |
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172 | case CDomain::type_attr::curvilinear : |
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173 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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174 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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175 | break ; |
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176 | case CDomain::type_attr::regular : |
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177 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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178 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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179 | break ; |
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180 | case CDomain::type_attr::unstructured : |
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181 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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182 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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183 | } |
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184 | |
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185 | this->writeAxisAttributes(lonid, "X", "longitude", "Longitude", "degrees_east", domid); |
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186 | this->writeAxisAttributes(latid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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187 | |
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188 | dim0.clear(); |
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189 | if (domain->type != CDomain::type_attr::unstructured) dim0.push_back(dimYid); |
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190 | dim0.push_back(dimXid); |
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191 | |
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192 | |
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193 | // supress mask if (server->intraCommSize > 1) |
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194 | // supress mask { |
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195 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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196 | // supress mask |
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197 | // supress mask this->writeMaskAttributes(maskid, |
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198 | // supress mask domain->data_dim.getValue()/*, |
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199 | // supress mask domain->data_ni.getValue(), |
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200 | // supress mask domain->data_nj.getValue(), |
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201 | // supress mask domain->data_ibegin.getValue(), |
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202 | // supress mask domain->data_jbegin.getValue()*/); |
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203 | // supress mask } |
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204 | |
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205 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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206 | |
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207 | SuperClassWriter::definition_end(); |
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208 | |
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209 | switch (domain->type) |
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210 | { |
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211 | case CDomain::type_attr::curvilinear : |
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212 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
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213 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
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214 | break; |
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215 | case CDomain::type_attr::regular : |
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216 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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217 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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218 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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219 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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220 | break; |
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221 | } |
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222 | SuperClassWriter::definition_start(); |
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223 | |
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224 | break; |
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225 | } |
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226 | case (ONE_FILE) : |
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227 | { |
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228 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni.getValue()); |
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229 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj.getValue()); |
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230 | |
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231 | |
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232 | switch (domain->type) |
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233 | { |
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234 | case CDomain::type_attr::curvilinear : |
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235 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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236 | lonid = StdString("nav_lon").append(appendDomid); |
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237 | latid = StdString("nav_lat").append(appendDomid); |
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238 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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239 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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240 | break; |
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241 | |
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242 | case CDomain::type_attr::regular : |
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243 | dim0.push_back(dimYid); |
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244 | dim1.push_back(dimXid); |
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245 | lonid = StdString("lon").append(appendDomid); |
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246 | latid = StdString("lat").append(appendDomid); |
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247 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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248 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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249 | break; |
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250 | } |
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251 | this->writeAxisAttributes |
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252 | (lonid, "X", "longitude", "Longitude", "degrees_east", domid); |
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253 | this->writeAxisAttributes |
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254 | (latid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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255 | |
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256 | |
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257 | SuperClassWriter::definition_end(); |
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258 | switch (domain->type) |
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259 | { |
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260 | case CDomain::type_attr::curvilinear : |
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261 | { |
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262 | std::vector<StdSize> start(2) ; |
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263 | std::vector<StdSize> count(2) ; |
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264 | if (domain->isEmpty()) |
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265 | { |
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266 | start[0]=0 ; start [1]=0 ; |
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267 | count[0]=0 ; count[1]=0 ; |
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268 | } |
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269 | else |
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270 | { |
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271 | start[1]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start [0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
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272 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
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273 | } |
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274 | |
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275 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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276 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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277 | break; |
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278 | } |
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279 | case CDomain::type_attr::regular : |
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280 | { |
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281 | std::vector<StdSize> start(1) ; |
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282 | std::vector<StdSize> count(1) ; |
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283 | if (domain->isEmpty()) |
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284 | { |
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285 | start[0]=0 ; |
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286 | count[0]=0 ; |
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287 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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288 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); } |
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289 | else |
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290 | { |
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291 | start[0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
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292 | count[0]=domain->zoom_nj_srv ; |
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293 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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294 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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295 | |
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296 | start[0]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; |
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297 | count[0]=domain->zoom_ni_srv ; |
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298 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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299 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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300 | } |
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301 | break; |
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302 | } |
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303 | } |
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304 | SuperClassWriter::definition_start(); |
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305 | break; |
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306 | } |
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307 | default : |
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308 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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309 | << "[ type = " << SuperClass::type << "]" |
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310 | << " not implemented yet !"); |
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311 | } |
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312 | domain->addRelFile(this->filename); |
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313 | } |
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314 | |
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315 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
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316 | { |
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317 | CContext* context = CContext::getCurrent() ; |
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318 | CContextServer* server=context->server ; |
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319 | |
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320 | if (domain->IsWritten(this->filename)) return; |
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321 | domain->checkAttributes(); |
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322 | |
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323 | if (domain->isEmpty()) |
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324 | if (SuperClass::type==MULTI_FILE) return ; |
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325 | |
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326 | std::vector<StdString> dim0, dim1; |
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327 | StdString domid = (!domain->name.isEmpty()) |
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328 | ? domain->name.getValue() : domain->getId(); |
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329 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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330 | |
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331 | |
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332 | StdString dimXid = StdString("cell").append(appendDomid); |
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333 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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334 | |
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335 | string lonid,latid,bounds_lonid,bounds_latid ; |
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336 | |
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337 | switch (SuperClass::type) |
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338 | { |
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339 | case (MULTI_FILE) : |
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340 | { |
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341 | lonid = StdString("lon").append(appendDomid); |
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342 | latid = StdString("lat").append(appendDomid); |
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343 | dim0.push_back(dimXid); |
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344 | |
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345 | SuperClassWriter::addDimension(dimXid, domain->zoom_nj_srv); |
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346 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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347 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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348 | |
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349 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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350 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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351 | |
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352 | |
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353 | this->writeAxisAttributes(lonid, "X", "longitude", "Longitude", "degrees_east", domid); |
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354 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
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355 | this->writeAxisAttributes(latid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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356 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
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357 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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358 | dim0.clear(); |
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359 | if (domain->hasBounds) |
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360 | { |
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361 | dim0.push_back(dimXid); |
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362 | dim0.push_back(dimVertId); |
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363 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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364 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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365 | } |
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366 | |
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367 | dim0.clear(); |
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368 | dim0.push_back(dimXid); |
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369 | |
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370 | SuperClassWriter::definition_end(); |
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371 | |
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372 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
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373 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
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374 | |
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375 | if (domain->hasBounds) |
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376 | { |
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377 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0); |
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378 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0); |
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379 | } |
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380 | SuperClassWriter::definition_start(); |
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381 | break ; |
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382 | } |
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383 | |
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384 | case (ONE_FILE) : |
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385 | { |
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386 | lonid = StdString("lon").append(appendDomid); |
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387 | latid = StdString("lat").append(appendDomid); |
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388 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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389 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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390 | dim0.push_back(dimXid); |
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391 | SuperClassWriter::addDimension(dimXid, domain->nj_glo); |
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392 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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393 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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394 | this->writeAxisAttributes(lonid, "X", "longitude", "Longitude", "degrees_east", domid); |
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395 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
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396 | this->writeAxisAttributes(latid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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397 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
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398 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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399 | dim0.clear(); |
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400 | |
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401 | if (domain->hasBounds) |
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402 | { |
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403 | dim0.push_back(dimXid); |
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404 | dim0.push_back(dimVertId); |
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405 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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406 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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407 | } |
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408 | |
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409 | SuperClassWriter::definition_end(); |
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410 | |
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411 | std::vector<StdSize> start(1), startBounds(2) ; |
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412 | std::vector<StdSize> count(1), countBounds(2) ; |
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413 | if (domain->isEmpty()) |
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414 | { |
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415 | start[0]=0 ; |
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416 | count[0]=0 ; |
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417 | startBounds[1]=0 ; |
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418 | countBounds[1]=domain->nvertex ; |
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419 | startBounds[0]=0 ; |
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420 | countBounds[0]=0 ; |
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421 | } |
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422 | else |
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423 | { |
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424 | start[0]=domain->zoom_jbegin_srv-domain->zoom_jbegin ; |
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425 | count[0]=domain->zoom_nj_srv ; |
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426 | startBounds[0]=domain->zoom_jbegin_srv-domain->zoom_jbegin ; |
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427 | startBounds[1]=0 ; |
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428 | countBounds[0]=domain->zoom_nj_srv ; |
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429 | countBounds[1]=domain->nvertex ; |
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430 | } |
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431 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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432 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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433 | if (domain->hasBounds) |
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434 | { |
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435 | SuperClassWriter::writeData(domain->bounds_lon_srv, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
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436 | SuperClassWriter::writeData(domain->bounds_lat_srv, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
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437 | } |
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438 | |
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439 | |
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440 | SuperClassWriter::definition_start(); |
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441 | |
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442 | break; |
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443 | } |
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444 | default : |
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445 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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446 | << "[ type = " << SuperClass::type << "]" |
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447 | << " not implemented yet !"); |
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448 | } |
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449 | domain->addRelFile(this->filename); |
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450 | } |
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451 | //-------------------------------------------------------------- |
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452 | |
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453 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
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454 | { |
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455 | if (axis->IsWritten(this->filename)) return; |
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456 | axis->checkAttributes(); |
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457 | StdSize zoom_size=axis->zoom_size.getValue() ; |
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458 | StdSize zoom_begin=axis->zoom_begin.getValue()-1 ; |
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459 | |
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460 | std::vector<StdString> dims; |
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461 | StdString axisid = (!axis->name.isEmpty()) |
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462 | ? axis->name.getValue() : axis->getId(); |
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463 | SuperClassWriter::addDimension(axisid, zoom_size); |
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464 | dims.push_back(axisid); |
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465 | |
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466 | switch (SuperClass::type) |
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467 | { |
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468 | case (MULTI_FILE ) : |
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469 | {} |
---|
470 | case (ONE_FILE) : |
---|
471 | { |
---|
472 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
---|
473 | |
---|
474 | SuperClassWriter::addAttribute("axis", StdString("Z"), &axisid); |
---|
475 | |
---|
476 | if (!axis->standard_name.isEmpty()) |
---|
477 | SuperClassWriter::addAttribute |
---|
478 | ("standard_name", axis->standard_name.getValue(), &axisid); |
---|
479 | |
---|
480 | if (!axis->long_name.isEmpty()) |
---|
481 | SuperClassWriter::addAttribute |
---|
482 | ("long_name", axis->long_name.getValue(), &axisid); |
---|
483 | |
---|
484 | if (!axis->unit.isEmpty()) |
---|
485 | SuperClassWriter::addAttribute |
---|
486 | ("units", axis->unit.getValue(), &axisid); |
---|
487 | |
---|
488 | if (!axis->positive.isEmpty()) |
---|
489 | if (axis->positive==CAxis::positive_attr::up) SuperClassWriter::addAttribute("positive", string("up"), &axisid); |
---|
490 | else SuperClassWriter::addAttribute("positive", string("down"), &axisid); |
---|
491 | |
---|
492 | SuperClassWriter::definition_end(); |
---|
493 | |
---|
494 | CArray<double,1> axis_value(zoom_size) ; |
---|
495 | for(StdSize i = 0 ; i < zoom_size ; i++) axis_value(i)=axis->value(i+zoom_begin) ; |
---|
496 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
497 | |
---|
498 | SuperClassWriter::definition_start(); |
---|
499 | |
---|
500 | break; |
---|
501 | } |
---|
502 | default : |
---|
503 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
504 | << "[ type = " << SuperClass::type << "]" |
---|
505 | << " not implemented yet !"); |
---|
506 | } |
---|
507 | axis->addRelFile(this->filename); |
---|
508 | } |
---|
509 | |
---|
510 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
511 | { |
---|
512 | SuperClassWriter::addDimension("time_counter"); |
---|
513 | } |
---|
514 | //-------------------------------------------------------------- |
---|
515 | |
---|
516 | void CNc4DataOutput::writeField_(CField* field) |
---|
517 | { |
---|
518 | CContext* context = CContext::getCurrent() ; |
---|
519 | CContextServer* server=context->server ; |
---|
520 | |
---|
521 | std::vector<StdString> dims, coodinates; |
---|
522 | CGrid* grid = field->grid; |
---|
523 | CDomain* domain = grid->domain; |
---|
524 | |
---|
525 | if (domain->isEmpty()) |
---|
526 | if (SuperClass::type==MULTI_FILE) return ; |
---|
527 | |
---|
528 | StdString timeid = StdString("time_counter"); |
---|
529 | StdString domid = (!domain->name.isEmpty()) |
---|
530 | ? domain->name.getValue() : domain->getId(); |
---|
531 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
532 | |
---|
533 | // bool isCurvilinear = domain->isCurvilinear ; |
---|
534 | // bool isCurvilinear = (domain->type == CDomain::type_attr::curvilinear) ; |
---|
535 | |
---|
536 | StdString dimXid,dimYid ; |
---|
537 | |
---|
538 | switch (domain->type) |
---|
539 | { |
---|
540 | case CDomain::type_attr::curvilinear : |
---|
541 | dimXid = StdString("x").append(appendDomid); |
---|
542 | dimYid = StdString("y").append(appendDomid); |
---|
543 | break ; |
---|
544 | case CDomain::type_attr::regular : |
---|
545 | dimXid = StdString("lon").append(appendDomid); |
---|
546 | dimYid = StdString("lat").append(appendDomid); |
---|
547 | break ; |
---|
548 | case CDomain::type_attr::unstructured : |
---|
549 | dimXid = StdString("cell").append(appendDomid); |
---|
550 | break ; |
---|
551 | } |
---|
552 | |
---|
553 | /* |
---|
554 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
555 | ? StdString("lon").append(appendDomid).append("_local") |
---|
556 | : lonid; |
---|
557 | StdString latid_loc = (server->intraCommSize > 1) |
---|
558 | ? StdString("lat").append(appendDomid).append("_local") |
---|
559 | : latid; |
---|
560 | */ |
---|
561 | StdString fieldid = (!field->name.isEmpty()) |
---|
562 | ? field->name.getValue() : field->getBaseFieldReference()->getId(); |
---|
563 | |
---|
564 | // unsigned int ssize = domain->zoom_ni_loc.getValue() * domain->zoom_nj_loc.getValue(); |
---|
565 | // bool isCurvilinear = (domain->lonvalue.getValue()->size() == ssize); |
---|
566 | // bool isCurvilinear = domain->isCurvilinear ; |
---|
567 | |
---|
568 | nc_type type ; |
---|
569 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
570 | else |
---|
571 | { |
---|
572 | if (field->prec==2) type = NC_SHORT ; |
---|
573 | else if (field->prec==4) type = NC_FLOAT ; |
---|
574 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
575 | } |
---|
576 | |
---|
577 | bool wtime = !(!field->operation.isEmpty() && field->foperation->timeType() == func::CFunctor::once); |
---|
578 | |
---|
579 | if (wtime) |
---|
580 | { |
---|
581 | |
---|
582 | //StdOStringStream oss; |
---|
583 | // oss << "time_" << field->operation.getValue() |
---|
584 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
585 | //oss |
---|
586 | if (field->foperation->timeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant")); |
---|
587 | else if (field->foperation->timeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered")); |
---|
588 | dims.push_back(timeid); |
---|
589 | } |
---|
590 | |
---|
591 | if (!grid->axis_ref.isEmpty()) |
---|
592 | { |
---|
593 | CAxis* axis = grid->axis ; |
---|
594 | StdString axisid = (!axis->name.isEmpty()) ? axis->name.getValue() : axis->getId(); |
---|
595 | dims.push_back(axisid); |
---|
596 | coodinates.push_back(axisid); |
---|
597 | } |
---|
598 | |
---|
599 | switch (domain->type) |
---|
600 | { |
---|
601 | case CDomain::type_attr::curvilinear : |
---|
602 | coodinates.push_back(StdString("nav_lon").append(appendDomid)); |
---|
603 | coodinates.push_back(StdString("nav_lat").append(appendDomid)); |
---|
604 | break; |
---|
605 | case CDomain::type_attr::regular : |
---|
606 | case CDomain::type_attr::unstructured : |
---|
607 | coodinates.push_back(StdString("lon").append(appendDomid)); |
---|
608 | coodinates.push_back(StdString("lat").append(appendDomid)); |
---|
609 | break; |
---|
610 | } |
---|
611 | |
---|
612 | if ( domain->type == CDomain::type_attr::curvilinear || domain->type == CDomain::type_attr::regular)dims.push_back(dimYid); |
---|
613 | dims.push_back(dimXid); |
---|
614 | |
---|
615 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
616 | |
---|
617 | if (!field->standard_name.isEmpty()) |
---|
618 | SuperClassWriter::addAttribute |
---|
619 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
620 | |
---|
621 | if (!field->long_name.isEmpty()) |
---|
622 | SuperClassWriter::addAttribute |
---|
623 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
624 | |
---|
625 | if (!field->unit.isEmpty()) |
---|
626 | SuperClassWriter::addAttribute |
---|
627 | ("units", field->unit.getValue(), &fieldid); |
---|
628 | |
---|
629 | if (!field->valid_min.isEmpty()) |
---|
630 | SuperClassWriter::addAttribute |
---|
631 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
632 | |
---|
633 | if (!field->valid_max.isEmpty()) |
---|
634 | SuperClassWriter::addAttribute |
---|
635 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
636 | |
---|
637 | if (!field->scale_factor.isEmpty()) |
---|
638 | SuperClassWriter::addAttribute |
---|
639 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
640 | |
---|
641 | if (!field->add_offset.isEmpty()) |
---|
642 | SuperClassWriter::addAttribute |
---|
643 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
644 | |
---|
645 | SuperClassWriter::addAttribute |
---|
646 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
647 | |
---|
648 | // write child variables as attributes |
---|
649 | |
---|
650 | |
---|
651 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
652 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
653 | |
---|
654 | |
---|
655 | if (wtime) |
---|
656 | { |
---|
657 | CDuration duration ; |
---|
658 | |
---|
659 | duration=CDuration::FromString(field->freq_op) ; |
---|
660 | duration.solveTimeStep(*(context->calendar)); |
---|
661 | SuperClassWriter::addAttribute("interval_operation", duration.toString(), &fieldid); |
---|
662 | |
---|
663 | duration=CDuration::FromString(field->getRelFile()->output_freq) ; |
---|
664 | duration.solveTimeStep(*(context->calendar)); |
---|
665 | SuperClassWriter::addAttribute("interval_write", duration.toString(), &fieldid); |
---|
666 | } |
---|
667 | |
---|
668 | if (!field->default_value.isEmpty()) |
---|
669 | { |
---|
670 | double default_value = field->default_value.getValue(); |
---|
671 | float fdefault_value = (float)default_value; |
---|
672 | if (type == NC_DOUBLE) |
---|
673 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
674 | else |
---|
675 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
676 | } |
---|
677 | else |
---|
678 | { |
---|
679 | double * default_value = NULL; |
---|
680 | SuperClassWriter::setDefaultValue(fieldid, default_value); |
---|
681 | } |
---|
682 | |
---|
683 | { // Ecriture des coordonnées |
---|
684 | |
---|
685 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
686 | std::vector<StdString>::iterator |
---|
687 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
688 | |
---|
689 | for (; itc!= endc; itc++) |
---|
690 | { |
---|
691 | StdString & coord = *itc; |
---|
692 | if (itc+1 != endc) |
---|
693 | coordstr.append(coord).append(" "); |
---|
694 | else coordstr.append(coord); |
---|
695 | } |
---|
696 | |
---|
697 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
698 | |
---|
699 | } |
---|
700 | |
---|
701 | } |
---|
702 | |
---|
703 | //-------------------------------------------------------------- |
---|
704 | |
---|
705 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
706 | { |
---|
707 | StdString filename = (!file->name.isEmpty()) |
---|
708 | ? file->name.getValue() : file->getId(); |
---|
709 | StdString description = (!file->description.isEmpty()) |
---|
710 | ? file->description.getValue() |
---|
711 | : StdString("Created by xios"); |
---|
712 | this->writeFileAttributes(filename, description, |
---|
713 | StdString ("CF-1.1"), |
---|
714 | StdString("An IPSL model"), |
---|
715 | this->getTimeStamp()); |
---|
716 | if (file->nbDomain==1) singleDomain=true ; |
---|
717 | else singleDomain=false ; |
---|
718 | } |
---|
719 | |
---|
720 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
721 | { |
---|
722 | string name ; |
---|
723 | if (!var->name.isEmpty()) name=var->name ; |
---|
724 | else if (var->hasId()) name=var->getId() ; |
---|
725 | else return ; |
---|
726 | |
---|
727 | if (var->getVarType()==CVariable::t_int) addAttribute(name,var->getData<int>(),&fieldId) ; |
---|
728 | else if (var->getVarType()==CVariable::t_short_int) addAttribute(name,var->getData<short int>(),&fieldId) ; |
---|
729 | else if (var->getVarType()==CVariable::t_long_int) addAttribute(name,var->getData<long int>(),&fieldId) ; |
---|
730 | else if (var->getVarType()==CVariable::t_float) addAttribute(name,var->getData<float>(),&fieldId) ; |
---|
731 | else if (var->getVarType()==CVariable::t_double) addAttribute(name,var->getData<double>(),&fieldId) ; |
---|
732 | else addAttribute(name,var->getData<string>(),&fieldId) ; |
---|
733 | } |
---|
734 | |
---|
735 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
736 | { |
---|
737 | string name ; |
---|
738 | if (!var->name.isEmpty()) name=var->name ; |
---|
739 | else if (var->hasId()) name=var->getId() ; |
---|
740 | else return ; |
---|
741 | |
---|
742 | if (var->getVarType()==CVariable::t_int) addAttribute(name,var->getData<int>()) ; |
---|
743 | else if (var->getVarType()==CVariable::t_short_int) addAttribute(name,var->getData<short int>()) ; |
---|
744 | else if (var->getVarType()==CVariable::t_long_int) addAttribute(name,var->getData<long int>()) ; |
---|
745 | else if (var->getVarType()==CVariable::t_float) addAttribute(name,var->getData<float>()) ; |
---|
746 | else if (var->getVarType()==CVariable::t_double) addAttribute(name,var->getData<double>()) ; |
---|
747 | else addAttribute(name,var->getData<string>()) ; |
---|
748 | } |
---|
749 | |
---|
750 | void CNc4DataOutput::syncFile_ (void) |
---|
751 | { |
---|
752 | SuperClassWriter::sync() ; |
---|
753 | } |
---|
754 | |
---|
755 | void CNc4DataOutput::closeFile_ (void) |
---|
756 | { |
---|
757 | SuperClassWriter::close() ; |
---|
758 | } |
---|
759 | |
---|
760 | //--------------------------------------------------------------- |
---|
761 | |
---|
762 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
763 | { |
---|
764 | const int buffer_size = 100; |
---|
765 | time_t rawtime; |
---|
766 | struct tm * timeinfo = NULL; |
---|
767 | char buffer [buffer_size]; |
---|
768 | |
---|
769 | time ( &rawtime ); |
---|
770 | timeinfo = localtime ( &rawtime ); |
---|
771 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
772 | |
---|
773 | return (StdString(buffer)); |
---|
774 | } |
---|
775 | |
---|
776 | //--------------------------------------------------------------- |
---|
777 | |
---|
778 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
779 | { |
---|
780 | CContext* context = CContext::getCurrent() ; |
---|
781 | // if (field->getRelFile()->isSyncTime()) SuperClassWriter::sync() ; |
---|
782 | CContextServer* server=context->server ; |
---|
783 | |
---|
784 | CGrid* grid = field->grid ; |
---|
785 | CDomain* domain = grid->domain ; |
---|
786 | |
---|
787 | if(SuperClass::type==MULTI_FILE || !isCollective) if (domain->isEmpty()) return; |
---|
788 | |
---|
789 | |
---|
790 | StdString fieldid = (!field->name.isEmpty()) |
---|
791 | ? field->name.getValue() |
---|
792 | : field->getBaseFieldReference()->getId(); |
---|
793 | |
---|
794 | StdOStringStream oss; |
---|
795 | string timeAxisId ; |
---|
796 | if (field->foperation->timeType() == func::CFunctor::instant) timeAxisId="time_instant" ; |
---|
797 | else if (field->foperation->timeType() == func::CFunctor::centered) timeAxisId="time_centered" ; |
---|
798 | |
---|
799 | |
---|
800 | CArray<double,1> time_data(1) ; |
---|
801 | CArray<double,1> time_counter(1) ; |
---|
802 | |
---|
803 | bool wtime = !(!field->operation.isEmpty() && (field->foperation->timeType() == func::CFunctor::once)); |
---|
804 | |
---|
805 | if (wtime) |
---|
806 | { |
---|
807 | time_counter(0)= (Time(*field->last_Write_srv)+Time(*field->lastlast_Write_srv))/2 -Time(context->calendar->getTimeOrigin()); |
---|
808 | if (field->foperation->timeType() == func::CFunctor::instant) |
---|
809 | time_data(0) = Time(*field->last_Write_srv)-Time(context->calendar->getTimeOrigin()); |
---|
810 | else if (field->foperation->timeType() == func::CFunctor::centered) time_data(0) = time_counter(0); |
---|
811 | |
---|
812 | } |
---|
813 | |
---|
814 | |
---|
815 | bool isRoot ; |
---|
816 | if (server->intraCommRank==0) isRoot=true ; |
---|
817 | else isRoot=false ; |
---|
818 | |
---|
819 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
820 | { |
---|
821 | double scaleFactor=1. ; |
---|
822 | double addOffset=0. ; |
---|
823 | if (!field->scale_factor.isEmpty()) scaleFactor=field->scale_factor ; |
---|
824 | if (!field->add_offset.isEmpty()) addOffset=field->add_offset ; |
---|
825 | field->scaleFactorAddOffset(scaleFactor,addOffset) ; |
---|
826 | } |
---|
827 | |
---|
828 | if (grid->hasAxis()) // 3D |
---|
829 | { |
---|
830 | CAxis* axis = grid->axis ; |
---|
831 | CArray<double,3> field_data3D(domain->zoom_ni_srv,domain->zoom_nj_srv,axis->zoom_size) ; |
---|
832 | if (!field->default_value.isEmpty()) field_data3D = field->default_value ; |
---|
833 | |
---|
834 | field->outputField(field_data3D); |
---|
835 | |
---|
836 | if (!field->prec.isEmpty() && field->prec==2) field_data3D=round(field_data3D) ; |
---|
837 | |
---|
838 | switch (SuperClass::type) |
---|
839 | { |
---|
840 | case (MULTI_FILE) : |
---|
841 | { |
---|
842 | SuperClassWriter::writeData(field_data3D, fieldid, isCollective, field->getNStep()-1); |
---|
843 | if (wtime) |
---|
844 | { |
---|
845 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep()-1); |
---|
846 | SuperClassWriter::writeData(time_counter, string("time_counter"), isCollective, field->getNStep()-1); |
---|
847 | } |
---|
848 | break ; |
---|
849 | } |
---|
850 | case (ONE_FILE) : |
---|
851 | { |
---|
852 | std::vector<StdSize> start(3) ; |
---|
853 | std::vector<StdSize> count(3) ; |
---|
854 | if (domain->isEmpty()) |
---|
855 | { |
---|
856 | start[0]=0 ; start[1]=0 ; start[2]=0 ; |
---|
857 | count[0]=0 ; count[1]=0 ; start[2]=0 ; |
---|
858 | } |
---|
859 | else |
---|
860 | { |
---|
861 | // start[2]=domain->zoom_ibegin_loc.getValue()-domain->zoom_ibegin.getValue() ; start [1]=domain->zoom_jbegin_loc.getValue()-domain->zoom_jbegin.getValue() ; start[0]=0 ; |
---|
862 | start[2]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start [1]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; start[0]=0 ; |
---|
863 | count[2]=domain->zoom_ni_srv ; count[1]=domain->zoom_nj_srv ; count[0] = axis->zoom_size.getValue(); |
---|
864 | } |
---|
865 | SuperClassWriter::writeData(field_data3D, fieldid, isCollective, field->getNStep()-1,&start,&count ); |
---|
866 | if (wtime) |
---|
867 | { |
---|
868 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep()-1,isRoot ); |
---|
869 | SuperClassWriter::writeTimeAxisData(time_counter, string("time_counter"), isCollective, field->getNStep()-1,isRoot ); |
---|
870 | } |
---|
871 | break; |
---|
872 | } |
---|
873 | } |
---|
874 | |
---|
875 | } |
---|
876 | else // 2D |
---|
877 | { |
---|
878 | CArray<double,2> field_data2D(domain->zoom_ni_srv,domain->zoom_nj_srv) ; |
---|
879 | if (!field->default_value.isEmpty()) field_data2D = field->default_value ; |
---|
880 | field->outputField(field_data2D); |
---|
881 | if (!field->prec.isEmpty() && field->prec==2) field_data2D=round(field_data2D) ; |
---|
882 | switch (SuperClass::type) |
---|
883 | { |
---|
884 | case (MULTI_FILE) : |
---|
885 | { |
---|
886 | SuperClassWriter::writeData(field_data2D, fieldid, isCollective, field->getNStep()-1); |
---|
887 | if (wtime) |
---|
888 | { |
---|
889 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep()-1); |
---|
890 | SuperClassWriter::writeData(time_counter, string("time_counter"), isCollective, field->getNStep()-1); |
---|
891 | } |
---|
892 | break; |
---|
893 | } |
---|
894 | case (ONE_FILE) : |
---|
895 | { |
---|
896 | std::vector<StdSize> start(2) ; |
---|
897 | std::vector<StdSize> count(2) ; |
---|
898 | if (domain->isEmpty()) |
---|
899 | { |
---|
900 | start[0]=0 ; start[1]=0 ; |
---|
901 | count[0]=0 ; count[1]=0 ; |
---|
902 | } |
---|
903 | else |
---|
904 | { |
---|
905 | start[1]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start[0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
---|
906 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
---|
907 | } |
---|
908 | |
---|
909 | SuperClassWriter::writeData(field_data2D, fieldid, isCollective, field->getNStep()-1,&start,&count); |
---|
910 | if (wtime) |
---|
911 | { |
---|
912 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep()-1,isRoot); |
---|
913 | SuperClassWriter::writeTimeAxisData(time_counter, string("time_counter"), isCollective, field->getNStep()-1,isRoot); |
---|
914 | } |
---|
915 | break; |
---|
916 | |
---|
917 | } |
---|
918 | } |
---|
919 | } |
---|
920 | } |
---|
921 | |
---|
922 | //--------------------------------------------------------------- |
---|
923 | |
---|
924 | void CNc4DataOutput::writeTimeAxis_ |
---|
925 | (CField* field, |
---|
926 | const boost::shared_ptr<CCalendar> cal) |
---|
927 | { |
---|
928 | StdOStringStream oss; |
---|
929 | |
---|
930 | // if (field->operation.getValue().compare("once") == 0) return ; |
---|
931 | if (field->foperation->timeType() == func::CFunctor::once) return ; |
---|
932 | |
---|
933 | // oss << "time_" << field->operation.getValue() |
---|
934 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
935 | |
---|
936 | string axisid ; |
---|
937 | if (field->foperation->timeType() == func::CFunctor::centered) axisid="time_centered" ; |
---|
938 | else if (field->foperation->timeType() == func::CFunctor::instant) axisid="time_instant" ; |
---|
939 | |
---|
940 | std::vector<StdString> dims; |
---|
941 | // StdString axisid = oss.str(); |
---|
942 | StdString timeid = StdString("time_counter"); |
---|
943 | |
---|
944 | dims.push_back(timeid); |
---|
945 | if (!SuperClassWriter::varExist(axisid)) |
---|
946 | { |
---|
947 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
948 | |
---|
949 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
950 | // StdOStringStream oss2; |
---|
951 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
952 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
953 | // StdString strInitdate=oss2.str() ; |
---|
954 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
955 | this->writeTimeAxisAttributes |
---|
956 | (axisid, cal->getType(), |
---|
957 | StdString("seconds since ").append(strTimeOrigin), |
---|
958 | strTimeOrigin); |
---|
959 | } |
---|
960 | |
---|
961 | dims.clear() ; |
---|
962 | axisid = "time_counter" ; |
---|
963 | timeid = "time_counter" ; |
---|
964 | |
---|
965 | dims.push_back(timeid); |
---|
966 | if (!SuperClassWriter::varExist(axisid)) |
---|
967 | { |
---|
968 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
969 | SuperClassWriter::addAttribute("axis", string("T"), &axisid); |
---|
970 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
971 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
972 | this->writeTimeAxisAttributes |
---|
973 | (axisid, cal->getType(), |
---|
974 | StdString("seconds since ").append(strTimeOrigin), |
---|
975 | strTimeOrigin); |
---|
976 | } |
---|
977 | |
---|
978 | |
---|
979 | } |
---|
980 | |
---|
981 | //--------------------------------------------------------------- |
---|
982 | |
---|
983 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
984 | const StdString & calendar, |
---|
985 | const StdString & units, |
---|
986 | const StdString & time_origin, |
---|
987 | const StdString & standard_name, |
---|
988 | const StdString & long_name, |
---|
989 | const StdString & title) |
---|
990 | { |
---|
991 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
992 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
993 | SuperClassWriter::addAttribute("title", title , &axis_name); |
---|
994 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
995 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
996 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
997 | } |
---|
998 | |
---|
999 | //--------------------------------------------------------------- |
---|
1000 | |
---|
1001 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
1002 | const StdString & axis, |
---|
1003 | const StdString & standard_name, |
---|
1004 | const StdString & long_name, |
---|
1005 | const StdString & units, |
---|
1006 | const StdString & nav_model) |
---|
1007 | { |
---|
1008 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
1009 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
1010 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
1011 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
1012 | SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
1013 | } |
---|
1014 | |
---|
1015 | //--------------------------------------------------------------- |
---|
1016 | |
---|
1017 | void CNc4DataOutput::writeLocalAttributes |
---|
1018 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
1019 | { |
---|
1020 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
1021 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
1022 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
1023 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
1024 | } |
---|
1025 | |
---|
1026 | void CNc4DataOutput::writeLocalAttributes_IOIPSL |
---|
1027 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
1028 | { |
---|
1029 | CArray<int,1> array(2) ; |
---|
1030 | |
---|
1031 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
1032 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
1033 | array=1,2 ; |
---|
1034 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
1035 | array=ni_glo,nj_glo ; |
---|
1036 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
1037 | array=ni,nj ; |
---|
1038 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
1039 | array=ibegin,jbegin ; |
---|
1040 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
1041 | array=ibegin+ni-1,jbegin+nj-1 ; |
---|
1042 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
1043 | array=0,0 ; |
---|
1044 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
1045 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
1046 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
1047 | /* |
---|
1048 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
1049 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
1050 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
1051 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
1052 | */ |
---|
1053 | |
---|
1054 | } |
---|
1055 | //--------------------------------------------------------------- |
---|
1056 | |
---|
1057 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
1058 | const StdString & description, |
---|
1059 | const StdString & conventions, |
---|
1060 | const StdString & production, |
---|
1061 | const StdString & timeStamp) |
---|
1062 | { |
---|
1063 | SuperClassWriter::addAttribute("name" , name); |
---|
1064 | SuperClassWriter::addAttribute("description", description); |
---|
1065 | SuperClassWriter::addAttribute("conventions", conventions); |
---|
1066 | SuperClassWriter::addAttribute("production" , production); |
---|
1067 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
1068 | } |
---|
1069 | |
---|
1070 | //--------------------------------------------------------------- |
---|
1071 | |
---|
1072 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
1073 | int data_dim, |
---|
1074 | int data_ni, |
---|
1075 | int data_nj, |
---|
1076 | int data_ibegin, |
---|
1077 | int data_jbegin) |
---|
1078 | { |
---|
1079 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
1080 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
1081 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
1082 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
1083 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
1084 | } |
---|
1085 | |
---|
1086 | ///-------------------------------------------------------------- |
---|
1087 | |
---|
1088 | } // namespace xios |
---|