1 | |
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2 | #include "nc4_data_output.hpp" |
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3 | |
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4 | #include <boost/lexical_cast.hpp> |
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5 | #include "attribute_template.hpp" |
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6 | #include "group_template.hpp" |
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7 | |
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8 | #include "file.hpp" |
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9 | #include "calendar.hpp" |
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10 | #include "context.hpp" |
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11 | #include "context_server.hpp" |
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12 | |
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13 | namespace xios |
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14 | { |
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15 | /// ////////////////////// Définitions ////////////////////// /// |
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16 | CNc4DataOutput::CNc4DataOutput |
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17 | (const StdString & filename, bool exist) |
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18 | : SuperClass() |
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19 | , SuperClassWriter(filename, exist) |
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20 | , filename(filename) |
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21 | { |
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22 | StdString timeid = StdString("time_counter"); |
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23 | SuperClass::type = MULTI_FILE; |
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24 | // if (!exist) |
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25 | // SuperClassWriter::addDimension(timeid); |
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26 | } |
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27 | |
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28 | CNc4DataOutput::CNc4DataOutput |
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29 | (const StdString & filename, bool exist, MPI_Comm comm_file,bool multifile, bool isCollective) |
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30 | : SuperClass() |
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31 | , SuperClassWriter(filename, exist, &comm_file,multifile) |
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32 | , comm_file(comm_file) |
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33 | , filename(filename) |
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34 | , isCollective(isCollective) |
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35 | { |
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36 | StdString timeid = StdString("time_counter"); |
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37 | |
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38 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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39 | |
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40 | // if (!exist) |
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41 | // SuperClassWriter::addDimension(timeid); |
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42 | } |
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43 | |
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44 | |
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45 | CNc4DataOutput::~CNc4DataOutput(void) |
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46 | { /* Ne rien faire de plus */ } |
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47 | |
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48 | ///-------------------------------------------------------------- |
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49 | |
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50 | const StdString & CNc4DataOutput::getFileName(void) const |
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51 | { |
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52 | return (this->filename); |
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53 | } |
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54 | |
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55 | //--------------------------------------------------------------- |
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56 | |
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57 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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58 | { |
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59 | CContext* context = CContext::getCurrent() ; |
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60 | CContextServer* server=context->server ; |
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61 | |
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62 | if (domain->IsWritten(this->filename)) return; |
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63 | domain->checkAttributes(); |
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64 | |
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65 | if (domain->isEmpty()) |
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66 | if (SuperClass::type==MULTI_FILE) return ; |
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67 | |
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68 | std::vector<StdString> dim0, dim1; |
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69 | StdString domid = (!domain->name.isEmpty()) |
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70 | ? domain->name.getValue() : domain->getId(); |
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71 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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72 | |
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73 | StdString dimXid = StdString("x").append(appendDomid); |
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74 | StdString dimYid = StdString("y").append(appendDomid); |
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75 | |
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76 | string lonid,latid ; |
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77 | /* |
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78 | StdString lonid_loc = (server->intraCommSize > 1) |
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79 | ? StdString("lon").append(appendDomid).append("_local") |
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80 | : lonid; |
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81 | StdString latid_loc = (server->intraCommSize > 1) |
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82 | ? StdString("lat").append(appendDomid).append("_local") |
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83 | : latid; |
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84 | */ |
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85 | bool isCurvilinear = domain->isCurvilinear ; |
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86 | |
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87 | switch (SuperClass::type) |
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88 | { |
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89 | case (MULTI_FILE) : |
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90 | { |
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91 | // if (domain->isEmpty()) return; |
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92 | |
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93 | if (server->intraCommSize > 1) |
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94 | { |
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95 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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96 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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97 | } |
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98 | |
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99 | if (isCurvilinear) |
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100 | { |
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101 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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102 | lonid = StdString("nav_lon").append(appendDomid); |
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103 | latid = StdString("nav_lat").append(appendDomid); |
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104 | } |
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105 | else |
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106 | { |
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107 | lonid = StdString("lon").append(appendDomid); |
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108 | latid = StdString("lat").append(appendDomid); |
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109 | dim0.push_back(dimYid); |
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110 | dim1.push_back(dimXid); |
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111 | } |
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112 | |
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113 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni_srv); |
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114 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj_srv); |
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115 | if (server->intraCommSize > 1) |
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116 | { |
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117 | this->writeLocalAttributes(domain->zoom_ibegin_srv, |
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118 | domain->zoom_ni_srv, |
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119 | domain->zoom_jbegin_srv, |
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120 | domain->zoom_nj_srv, |
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121 | appendDomid); |
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122 | |
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123 | if (singleDomain) this->writeLocalAttributes_IOIPSL(domain->zoom_ibegin_srv, |
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124 | domain->zoom_ni_srv, |
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125 | domain->zoom_jbegin_srv, |
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126 | domain->zoom_nj_srv, |
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127 | domain->ni_glo,domain->nj_glo, |
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128 | server->intraCommRank,server->intraCommSize); |
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129 | } |
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130 | |
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131 | if (isCurvilinear) |
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132 | { |
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133 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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134 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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135 | } |
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136 | else |
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137 | { |
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138 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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139 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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140 | } |
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141 | this->writeAxisAttributes |
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142 | (lonid, "X", "longitude", "Longitude", "degrees_east", domid); |
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143 | this->writeAxisAttributes |
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144 | (latid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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145 | |
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146 | dim0.clear(); |
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147 | dim0.push_back(dimYid); |
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148 | dim0.push_back(dimXid); |
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149 | |
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150 | |
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151 | // supress mask if (server->intraCommSize > 1) |
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152 | // supress mask { |
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153 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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154 | // supress mask |
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155 | // supress mask this->writeMaskAttributes(maskid, |
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156 | // supress mask domain->data_dim.getValue()/*, |
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157 | // supress mask domain->data_ni.getValue(), |
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158 | // supress mask domain->data_nj.getValue(), |
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159 | // supress mask domain->data_ibegin.getValue(), |
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160 | // supress mask domain->data_jbegin.getValue()*/); |
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161 | // supress mask } |
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162 | |
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163 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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164 | |
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165 | SuperClassWriter::definition_end(); |
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166 | if (isCurvilinear) |
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167 | { |
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168 | |
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169 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0); |
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170 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0); |
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171 | // supress mask if (server->intraCommSize > 1) SuperClassWriter::writeData(mask, maskid); |
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172 | } |
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173 | else |
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174 | { |
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175 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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176 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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177 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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178 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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179 | } |
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180 | SuperClassWriter::definition_start(); |
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181 | |
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182 | break; |
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183 | } |
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184 | case (ONE_FILE) : |
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185 | { |
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186 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni.getValue()); |
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187 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj.getValue()); |
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188 | |
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189 | |
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190 | if (isCurvilinear) |
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191 | { |
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192 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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193 | lonid = StdString("nav_lon").append(appendDomid); |
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194 | latid = StdString("nav_lat").append(appendDomid); |
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195 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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196 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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197 | } |
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198 | else |
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199 | { |
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200 | dim0.push_back(dimYid); |
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201 | dim1.push_back(dimXid); |
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202 | lonid = StdString("lon").append(appendDomid); |
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203 | latid = StdString("lat").append(appendDomid); |
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204 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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205 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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206 | } |
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207 | this->writeAxisAttributes |
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208 | (latid, "X", "longitude", "Longitude", "degrees_east", domid); |
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209 | this->writeAxisAttributes |
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210 | (lonid, "Y", "latitude", "Latitude", "degrees_north", domid); |
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211 | |
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212 | |
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213 | SuperClassWriter::definition_end(); |
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214 | if (isCurvilinear) |
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215 | { |
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216 | std::vector<StdSize> start(2) ; |
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217 | std::vector<StdSize> count(2) ; |
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218 | if (domain->isEmpty()) |
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219 | { |
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220 | start[0]=0 ; start [1]=0 ; |
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221 | count[0]=0 ; count[1]=0 ; |
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222 | } |
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223 | else |
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224 | { |
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225 | start[1]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start [0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
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226 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
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227 | } |
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228 | |
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229 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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230 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); |
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231 | } |
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232 | else |
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233 | { |
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234 | std::vector<StdSize> start(1) ; |
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235 | std::vector<StdSize> count(1) ; |
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236 | if (domain->isEmpty()) |
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237 | { |
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238 | start[0]=0 ; |
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239 | count[0]=0 ; |
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240 | SuperClassWriter::writeData(domain->latvalue_srv, latid, isCollective, 0,&start,&count); |
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241 | SuperClassWriter::writeData(domain->lonvalue_srv, lonid, isCollective, 0,&start,&count); } |
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242 | else |
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243 | { |
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244 | start[0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
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245 | count[0]=domain->zoom_nj_srv ; |
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246 | CArray<double,1> lat = domain->latvalue_srv(Range(fromStart,toEnd,domain->zoom_ni_srv)) ; |
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247 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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248 | |
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249 | start[0]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; |
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250 | count[0]=domain->zoom_ni_srv ; |
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251 | CArray<double,1> lon=domain->lonvalue_srv(Range(0,domain->zoom_ni_srv-1)) ; |
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252 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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253 | } |
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254 | } |
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255 | SuperClassWriter::definition_start(); |
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256 | break; |
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257 | } |
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258 | default : |
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259 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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260 | << "[ type = " << SuperClass::type << "]" |
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261 | << " not implemented yet !"); |
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262 | } |
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263 | domain->addRelFile(this->filename); |
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264 | } |
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265 | |
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266 | //-------------------------------------------------------------- |
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267 | |
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268 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
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269 | { |
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270 | if (axis->IsWritten(this->filename)) return; |
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271 | axis->checkAttributes(); |
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272 | StdSize zoom_size=axis->zoom_size.getValue() ; |
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273 | StdSize zoom_begin=axis->zoom_begin.getValue()-1 ; |
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274 | |
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275 | std::vector<StdString> dims; |
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276 | StdString axisid = (!axis->name.isEmpty()) |
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277 | ? axis->name.getValue() : axis->getId(); |
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278 | SuperClassWriter::addDimension(axisid, zoom_size); |
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279 | dims.push_back(axisid); |
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280 | |
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281 | switch (SuperClass::type) |
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282 | { |
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283 | case (MULTI_FILE ) : |
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284 | {} |
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285 | case (ONE_FILE) : |
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286 | { |
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287 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
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288 | |
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289 | SuperClassWriter::addAttribute("axis", StdString("Z"), &axisid); |
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290 | |
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291 | if (!axis->standard_name.isEmpty()) |
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292 | SuperClassWriter::addAttribute |
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293 | ("standard_name", axis->standard_name.getValue(), &axisid); |
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294 | |
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295 | if (!axis->long_name.isEmpty()) |
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296 | SuperClassWriter::addAttribute |
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297 | ("long_name", axis->long_name.getValue(), &axisid); |
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298 | |
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299 | if (!axis->unit.isEmpty()) |
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300 | SuperClassWriter::addAttribute |
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301 | ("units", axis->unit.getValue(), &axisid); |
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302 | |
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303 | if (!axis->positive.isEmpty()) |
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304 | if (axis->positive==CAxis::positive_attr::up) SuperClassWriter::addAttribute("positive", string("up"), &axisid); |
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305 | else SuperClassWriter::addAttribute("positive", string("down"), &axisid); |
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306 | |
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307 | SuperClassWriter::definition_end(); |
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308 | |
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309 | CArray<double,1> axis_value(zoom_size) ; |
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310 | for(StdSize i = 0 ; i < zoom_size ; i++) axis_value(i)=axis->value(i+zoom_begin) ; |
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311 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
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312 | |
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313 | SuperClassWriter::definition_start(); |
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314 | |
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315 | break; |
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316 | } |
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317 | default : |
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318 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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319 | << "[ type = " << SuperClass::type << "]" |
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320 | << " not implemented yet !"); |
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321 | } |
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322 | axis->addRelFile(this->filename); |
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323 | } |
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324 | |
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325 | void CNc4DataOutput::writeTimeDimension_(void) |
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326 | { |
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327 | SuperClassWriter::addDimension(string("time_counter")); |
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328 | } |
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329 | //-------------------------------------------------------------- |
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330 | |
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331 | void CNc4DataOutput::writeField_(CField* field) |
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332 | { |
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333 | CContext* context = CContext::getCurrent() ; |
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334 | CContextServer* server=context->server ; |
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335 | |
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336 | std::vector<StdString> dims, coodinates; |
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337 | CGrid* grid = field->grid; |
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338 | CDomain* domain = grid->domain; |
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339 | |
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340 | if (domain->isEmpty()) |
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341 | if (SuperClass::type==MULTI_FILE) return ; |
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342 | |
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343 | StdString timeid = StdString("time_counter"); |
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344 | StdString domid = (!domain->name.isEmpty()) |
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345 | ? domain->name.getValue() : domain->getId(); |
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346 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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347 | |
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348 | StdString dimXid = StdString("x").append(appendDomid); |
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349 | StdString dimYid = StdString("y").append(appendDomid); |
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350 | /* |
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351 | StdString lonid_loc = (server->intraCommSize > 1) |
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352 | ? StdString("lon").append(appendDomid).append("_local") |
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353 | : lonid; |
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354 | StdString latid_loc = (server->intraCommSize > 1) |
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355 | ? StdString("lat").append(appendDomid).append("_local") |
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356 | : latid; |
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357 | */ |
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358 | StdString fieldid = (!field->name.isEmpty()) |
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359 | ? field->name.getValue() : field->getBaseFieldReference()->getId(); |
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360 | |
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361 | // unsigned int ssize = domain->zoom_ni_loc.getValue() * domain->zoom_nj_loc.getValue(); |
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362 | // bool isCurvilinear = (domain->lonvalue.getValue()->size() == ssize); |
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363 | bool isCurvilinear = domain->isCurvilinear ; |
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364 | |
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365 | nc_type type = (!field->prec.isEmpty() && |
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366 | ( field->prec.getValue() == 4)) |
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367 | ? NC_FLOAT : NC_DOUBLE; |
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368 | bool wtime = !(!field->operation.isEmpty() && |
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369 | ( field->operation.getValue().compare("once") == 0)); |
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370 | |
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371 | if (wtime) |
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372 | { |
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373 | StdOStringStream oss; |
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374 | oss << "time_" << field->operation.getValue() |
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375 | << "_" << field->getRelFile()->output_freq.getValue(); |
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376 | |
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377 | coodinates.push_back(oss.str()); |
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378 | dims.push_back(timeid); |
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379 | } |
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380 | |
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381 | if (!grid->axis_ref.isEmpty()) |
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382 | { |
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383 | CAxis* axis = grid->axis ; |
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384 | StdString axisid = (!axis->name.isEmpty()) ? axis->name.getValue() : axis->getId(); |
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385 | dims.push_back(axisid); |
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386 | coodinates.push_back(axisid); |
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387 | } |
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388 | |
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389 | if (isCurvilinear) |
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390 | { |
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391 | coodinates.push_back(StdString("nav_lat").append(appendDomid)); |
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392 | coodinates.push_back(StdString("nav_lon").append(appendDomid)); |
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393 | } |
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394 | else |
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395 | { |
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396 | coodinates.push_back(StdString("lat").append(appendDomid)); |
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397 | coodinates.push_back(StdString("lon").append(appendDomid)); |
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398 | } |
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399 | |
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400 | switch (SuperClass::type) |
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401 | { |
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402 | case (MULTI_FILE) : |
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403 | { |
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404 | dims.push_back(dimYid); |
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405 | dims.push_back(dimXid); |
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406 | break ; |
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407 | } |
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408 | case (ONE_FILE) : |
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409 | { |
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410 | dims.push_back(dimYid); |
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411 | dims.push_back(dimXid); |
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412 | break; |
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413 | } |
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414 | default : |
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415 | ERROR("CNc4DataOutput::writeDomain(domain)", |
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416 | << "[ type = " << SuperClass::type << "]" |
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417 | << " not implemented yet !"); |
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418 | } |
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419 | |
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420 | SuperClassWriter::addVariable(fieldid, type, dims); |
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421 | |
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422 | if (!field->standard_name.isEmpty()) |
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423 | SuperClassWriter::addAttribute |
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424 | ("standard_name", field->standard_name.getValue(), &fieldid); |
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425 | |
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426 | if (!field->long_name.isEmpty()) |
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427 | SuperClassWriter::addAttribute |
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428 | ("long_name", field->long_name.getValue(), &fieldid); |
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429 | |
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430 | if (!field->unit.isEmpty()) |
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431 | SuperClassWriter::addAttribute |
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432 | ("units", field->unit.getValue(), &fieldid); |
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433 | |
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434 | SuperClassWriter::addAttribute |
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435 | ("online_operation", field->operation.getValue(), &fieldid); |
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436 | |
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437 | if (wtime) |
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438 | { |
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439 | SuperClassWriter::addAttribute |
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440 | ("interval_operation", field->freq_op.getValue(), &fieldid); |
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441 | SuperClassWriter::addAttribute |
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442 | ("interval_write", field->getRelFile()->output_freq.getValue(), &fieldid); |
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443 | } |
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444 | |
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445 | if (!field->default_value.isEmpty()) |
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446 | { |
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447 | double default_value = field->default_value.getValue(); |
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448 | float fdefault_value = (float)default_value; |
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449 | if (type == NC_DOUBLE) |
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450 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
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451 | else |
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452 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
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453 | } |
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454 | else |
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455 | { |
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456 | double * default_value = NULL; |
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457 | SuperClassWriter::setDefaultValue(fieldid, default_value); |
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458 | } |
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459 | |
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460 | { // Ecriture des coordonnées |
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461 | |
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462 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
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463 | std::vector<StdString>::iterator |
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464 | itc = coodinates.begin(), endc = coodinates.end(); |
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465 | |
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466 | for (; itc!= endc; itc++) |
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467 | { |
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468 | StdString & coord = *itc; |
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469 | if (itc+1 != endc) |
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470 | coordstr.append(coord).append(" "); |
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471 | else coordstr.append(coord); |
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472 | } |
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473 | |
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474 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
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475 | |
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476 | } |
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477 | |
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478 | } |
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479 | |
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480 | //-------------------------------------------------------------- |
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481 | |
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482 | void CNc4DataOutput::writeFile_ (CFile* file) |
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483 | { |
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484 | StdString filename = (!file->name.isEmpty()) |
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485 | ? file->name.getValue() : file->getId(); |
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486 | StdString description = (!file->description.isEmpty()) |
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487 | ? file->description.getValue() |
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488 | : StdString("Created by xios"); |
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489 | this->writeFileAttributes(filename, description, |
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490 | StdString ("CF-1.1"), |
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491 | StdString("An IPSL model"), |
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492 | this->getTimeStamp()); |
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493 | if (file->nbDomain==1) singleDomain=true ; |
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494 | else singleDomain=false ; |
---|
495 | } |
---|
496 | |
---|
497 | void CNc4DataOutput::syncFile_ (void) |
---|
498 | { |
---|
499 | SuperClassWriter::sync() ; |
---|
500 | } |
---|
501 | |
---|
502 | void CNc4DataOutput::closeFile_ (void) |
---|
503 | { |
---|
504 | SuperClassWriter::close() ; |
---|
505 | } |
---|
506 | |
---|
507 | //--------------------------------------------------------------- |
---|
508 | |
---|
509 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
510 | { |
---|
511 | const int buffer_size = 100; |
---|
512 | time_t rawtime; |
---|
513 | struct tm * timeinfo = NULL; |
---|
514 | char buffer [buffer_size]; |
---|
515 | |
---|
516 | time ( &rawtime ); |
---|
517 | timeinfo = localtime ( &rawtime ); |
---|
518 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
519 | |
---|
520 | return (StdString(buffer)); |
---|
521 | } |
---|
522 | |
---|
523 | //--------------------------------------------------------------- |
---|
524 | |
---|
525 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
526 | { |
---|
527 | CContext* context = CContext::getCurrent() ; |
---|
528 | // if (field->getRelFile()->isSyncTime()) SuperClassWriter::sync() ; |
---|
529 | CContextServer* server=context->server ; |
---|
530 | |
---|
531 | CGrid* grid = field->grid ; |
---|
532 | CDomain* domain = grid->domain ; |
---|
533 | |
---|
534 | if(SuperClass::type==MULTI_FILE || !isCollective) if (domain->isEmpty()) return; |
---|
535 | |
---|
536 | |
---|
537 | StdString fieldid = (!field->name.isEmpty()) |
---|
538 | ? field->name.getValue() |
---|
539 | : field->getBaseFieldReference()->getId(); |
---|
540 | |
---|
541 | StdOStringStream oss; |
---|
542 | oss << "time_" << field->operation.getValue() |
---|
543 | << "_" << field->getRelFile()->output_freq.getValue(); |
---|
544 | |
---|
545 | CArray<double,1> time_data(1) ; |
---|
546 | |
---|
547 | if (field->operation.getValue()=="instant") time_data(0) = Time(*field->last_Write_srv) |
---|
548 | -Time(context->calendar->getTimeOrigin()); |
---|
549 | else time_data(0) = (Time(*field->last_Write_srv)+Time(*field->lastlast_Write_srv))/2 |
---|
550 | -Time(context->calendar->getTimeOrigin()); |
---|
551 | |
---|
552 | |
---|
553 | bool isRoot ; |
---|
554 | if (server->intraCommRank==0) isRoot=true ; |
---|
555 | else isRoot=false ; |
---|
556 | |
---|
557 | if (grid->hasAxis()) // 3D |
---|
558 | { |
---|
559 | CAxis* axis = grid->axis ; |
---|
560 | CArray<double,3> field_data3D(domain->zoom_ni_srv,domain->zoom_nj_srv,axis->zoom_size) ; |
---|
561 | if (!field->default_value.isEmpty()) field_data3D = field->default_value ; |
---|
562 | field->outputField(field_data3D); |
---|
563 | switch (SuperClass::type) |
---|
564 | { |
---|
565 | case (MULTI_FILE) : |
---|
566 | { |
---|
567 | SuperClassWriter::writeData(field_data3D, fieldid, isCollective, field->getNStep()-1); |
---|
568 | SuperClassWriter::writeData(time_data, oss.str(), isCollective, field->getNStep()-1); |
---|
569 | break ; |
---|
570 | } |
---|
571 | case (ONE_FILE) : |
---|
572 | { |
---|
573 | std::vector<StdSize> start(3) ; |
---|
574 | std::vector<StdSize> count(3) ; |
---|
575 | if (domain->isEmpty()) |
---|
576 | { |
---|
577 | start[0]=0 ; start[1]=0 ; start[2]=0 ; |
---|
578 | count[0]=0 ; count[1]=0 ; start[2]=0 ; |
---|
579 | } |
---|
580 | else |
---|
581 | { |
---|
582 | // start[2]=domain->zoom_ibegin_loc.getValue()-domain->zoom_ibegin.getValue() ; start [1]=domain->zoom_jbegin_loc.getValue()-domain->zoom_jbegin.getValue() ; start[0]=0 ; |
---|
583 | start[2]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start [1]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; start[0]=0 ; |
---|
584 | count[2]=domain->zoom_ni_srv ; count[1]=domain->zoom_nj_srv ; count[0] = axis->zoom_size.getValue(); |
---|
585 | } |
---|
586 | SuperClassWriter::writeData(field_data3D, fieldid, isCollective, field->getNStep()-1,&start,&count ); |
---|
587 | SuperClassWriter::writeTimeAxisData(time_data, oss.str(), isCollective, field->getNStep()-1,isRoot ); |
---|
588 | break; |
---|
589 | } |
---|
590 | } |
---|
591 | |
---|
592 | } |
---|
593 | else // 2D |
---|
594 | { |
---|
595 | CArray<double,2> field_data2D(domain->zoom_ni_srv,domain->zoom_nj_srv) ; |
---|
596 | if (!field->default_value.isEmpty()) field_data2D = field->default_value ; |
---|
597 | field->outputField(field_data2D); |
---|
598 | switch (SuperClass::type) |
---|
599 | { |
---|
600 | case (MULTI_FILE) : |
---|
601 | { |
---|
602 | SuperClassWriter::writeData(field_data2D, fieldid, isCollective, field->getNStep()-1); |
---|
603 | SuperClassWriter::writeData(time_data, oss.str(), isCollective, field->getNStep()-1); |
---|
604 | break; |
---|
605 | } |
---|
606 | case (ONE_FILE) : |
---|
607 | { |
---|
608 | std::vector<StdSize> start(2) ; |
---|
609 | std::vector<StdSize> count(2) ; |
---|
610 | if (domain->isEmpty()) |
---|
611 | { |
---|
612 | start[0]=0 ; start[1]=0 ; |
---|
613 | count[0]=0 ; count[1]=0 ; |
---|
614 | } |
---|
615 | else |
---|
616 | { |
---|
617 | start[1]=domain->zoom_ibegin_srv-domain->zoom_ibegin.getValue() ; start[0]=domain->zoom_jbegin_srv-domain->zoom_jbegin.getValue() ; |
---|
618 | count[1]=domain->zoom_ni_srv ; count[0]=domain->zoom_nj_srv ; |
---|
619 | } |
---|
620 | |
---|
621 | SuperClassWriter::writeData(field_data2D, fieldid, isCollective, field->getNStep()-1,&start,&count); |
---|
622 | SuperClassWriter::writeTimeAxisData(time_data, oss.str(), isCollective, field->getNStep()-1,isRoot); |
---|
623 | break; |
---|
624 | |
---|
625 | } |
---|
626 | } |
---|
627 | } |
---|
628 | } |
---|
629 | |
---|
630 | //--------------------------------------------------------------- |
---|
631 | |
---|
632 | void CNc4DataOutput::writeTimeAxis_ |
---|
633 | (CField* field, |
---|
634 | const boost::shared_ptr<CCalendar> cal) |
---|
635 | { |
---|
636 | StdOStringStream oss; |
---|
637 | oss << "time_" << field->operation.getValue() |
---|
638 | << "_" << field->getRelFile()->output_freq.getValue(); |
---|
639 | |
---|
640 | std::vector<StdString> dims; |
---|
641 | StdString axisid = oss.str(); |
---|
642 | StdString timeid = StdString("time_counter"); |
---|
643 | |
---|
644 | dims.push_back(timeid); |
---|
645 | if (!SuperClassWriter::varExist(axisid)) |
---|
646 | { |
---|
647 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
648 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
649 | // StdOStringStream oss2; |
---|
650 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
651 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
652 | // StdString strInitdate=oss2.str() ; |
---|
653 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
654 | this->writeTimeAxisAttributes |
---|
655 | (axisid, cal->getType(), |
---|
656 | StdString("seconds since ").append(strTimeOrigin), |
---|
657 | strTimeOrigin); |
---|
658 | } |
---|
659 | |
---|
660 | } |
---|
661 | |
---|
662 | //--------------------------------------------------------------- |
---|
663 | |
---|
664 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
665 | const StdString & calendar, |
---|
666 | const StdString & units, |
---|
667 | const StdString & time_origin, |
---|
668 | const StdString & standard_name, |
---|
669 | const StdString & long_name, |
---|
670 | const StdString & title) |
---|
671 | { |
---|
672 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
673 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
674 | SuperClassWriter::addAttribute("title", title , &axis_name); |
---|
675 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
676 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
677 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
678 | } |
---|
679 | |
---|
680 | //--------------------------------------------------------------- |
---|
681 | |
---|
682 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
683 | const StdString & axis, |
---|
684 | const StdString & standard_name, |
---|
685 | const StdString & long_name, |
---|
686 | const StdString & units, |
---|
687 | const StdString & nav_model) |
---|
688 | { |
---|
689 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
690 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
691 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
692 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
693 | SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
694 | } |
---|
695 | |
---|
696 | //--------------------------------------------------------------- |
---|
697 | |
---|
698 | void CNc4DataOutput::writeLocalAttributes |
---|
699 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
700 | { |
---|
701 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
702 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
703 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
704 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
705 | } |
---|
706 | |
---|
707 | void CNc4DataOutput::writeLocalAttributes_IOIPSL |
---|
708 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
709 | { |
---|
710 | CArray<int,1> array(2) ; |
---|
711 | |
---|
712 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
713 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
714 | array=1,2 ; |
---|
715 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
716 | array=ni_glo,nj_glo ; |
---|
717 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
718 | array=ni,nj ; |
---|
719 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
720 | array=ibegin,jbegin ; |
---|
721 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
722 | array=ibegin+ni-1,jbegin+nj-1 ; |
---|
723 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
724 | array=0,0 ; |
---|
725 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
726 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
727 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
728 | /* |
---|
729 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
730 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
731 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
732 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
733 | */ |
---|
734 | |
---|
735 | } |
---|
736 | //--------------------------------------------------------------- |
---|
737 | |
---|
738 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
739 | const StdString & description, |
---|
740 | const StdString & conventions, |
---|
741 | const StdString & production, |
---|
742 | const StdString & timeStamp) |
---|
743 | { |
---|
744 | SuperClassWriter::addAttribute("name" , name); |
---|
745 | SuperClassWriter::addAttribute("description", description); |
---|
746 | SuperClassWriter::addAttribute("conventions", conventions); |
---|
747 | SuperClassWriter::addAttribute("production" , production); |
---|
748 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
749 | } |
---|
750 | |
---|
751 | //--------------------------------------------------------------- |
---|
752 | |
---|
753 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
754 | int data_dim, |
---|
755 | int data_ni, |
---|
756 | int data_nj, |
---|
757 | int data_ibegin, |
---|
758 | int data_jbegin) |
---|
759 | { |
---|
760 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
761 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
762 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
763 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
764 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
765 | } |
---|
766 | |
---|
767 | ///-------------------------------------------------------------- |
---|
768 | |
---|
769 | } // namespace xios |
---|